17-03-18 04:19:24.764 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:19:24.764 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:19:24.764 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 04:19:24.764 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:19:24.764 -07 000000608 INF: FPGA: Recv YRDPOS 153257
17-03-18 04:19:24.774 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:19:24.774 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:19:24.774 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:19:24.774 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:19:24.774 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:19:24.894 -07 000000444 INF: FPGA: Recv YMVTO 154377 872
17-03-18 04:19:24.894 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 116 ms overall
17-03-18 04:19:24.894 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 04:19:24.894 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 04:19:24.894 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 04:19:25.744 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.02213,
17-03-18 04:19:26.654 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:19:26.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1734, R2=1802, Total=3536. Warn if over 250 bubbles per interval.
17-03-18 04:19:27.894 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:19:27.894 -07 000000618 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:19:27.904 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:19:27.904 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:19:27.924 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:19:27.924 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-18 04:19:27.924 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3159 ms
17-03-18 04:19:27.934 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 60° ===================
17-03-18 04:19:27.934 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:19:27.934 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:19:27.934 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:19:27.944 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:19:27.944 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:19:27.944 -07 000000474 INF: FPGA: Recv TEC2EN 
17-03-18 04:19:27.954 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:19:27.954 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 60° ===================
17-03-18 04:19:27.954 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:19:27.954 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:19:27.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:19:27.984 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:19:27.984 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:19:27.984 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:19:28.284 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:19:28.304 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:19:28.304 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:19:28.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:19:28.374 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:19:28.374 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:19:28.474 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:19:28.474 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:19:28.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:28.504 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:19:28.504 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:19:28.504 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:19:28.634 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:19:28.674 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:31.104 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.981281,
17-03-18 04:19:31.654 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:19:31.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1734, R2=1802, Total=3536. Warn if over 250 bubbles per interval.
17-03-18 04:19:31.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:31.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:32.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:32.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:32.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:32.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:32.734 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-18 04:19:32.734 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:19:32.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:32.894 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:19:32.894 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:19:33.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:33.054 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:19:33.054 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:19:33.054 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:19:33.184 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:19:33.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:33.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:33.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:33.674 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:19:33.674 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:19:34.894 -07 000000610 INF: AsyncDelayTimer waited 1207ms
17-03-18 04:19:34.894 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:19:34.894 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:19:34.914 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:19:34.914 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:19:34.914 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:19:35.044 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:19:35.064 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:19:35.064 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:19:35.114 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:19:35.134 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:19:35.134 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:19:35.234 -07 000000610 INF: =================== Cycle #124, Pumping Reagent CMS (4) ===================
17-03-18 04:19:35.234 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:19:35.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:35.264 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:19:35.264 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:19:35.264 -07 000000610 INF: =================== Cycle #124, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:19:35.394 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:19:35.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:36.464 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.0344,
17-03-18 04:19:36.654 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:19:36.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1734, R2=1802, Total=3536. Warn if over 250 bubbles per interval.
17-03-18 04:19:36.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:36.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:37.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:37.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:37.354 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:19:37.354 -07 000000610 INF: =================== Cycle #124, Pumping Reagent CMS (4) ===================
17-03-18 04:19:37.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:37.514 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:19:37.514 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:19:37.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:37.674 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:19:37.674 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:19:37.674 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:19:37.804 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:19:37.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:38.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:38.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:38.294 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:19:38.294 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:19:39.514 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:19:39.514 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:19:39.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:19:39.534 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:19:39.534 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:19:39.534 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:19:39.684 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:19:39.704 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:19:39.704 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:19:39.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:19:39.774 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:19:39.774 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:19:39.874 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:19:39.874 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:19:39.874 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:39.904 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:19:39.904 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:19:39.904 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:19:40.034 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:19:40.074 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:40.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:40.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:40.974 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:19:40.974 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:19:41.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:41.134 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:19:41.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:19:41.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:41.294 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:19:41.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:19:41.294 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:19:41.424 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:19:41.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:41.654 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:19:41.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1734, R2=1802, Total=3536. Warn if over 250 bubbles per interval.
17-03-18 04:19:41.824 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.026244,
17-03-18 04:19:41.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:41.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:41.914 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:19:41.914 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:19:41.914 -07 000000455 INF: WaitCommand(10000) start
17-03-18 04:19:41.914 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:19:41.914 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:19:43.134 -07 000000626 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:19:43.134 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 04:19:43.164 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:19:43.164 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:19:43.294 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:19:43.334 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:44.864 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:44.894 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:45.314 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:45.344 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:19:45.344 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:19:45.344 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:19:45.344 -07 000000626 INF: ===================  ===================
17-03-18 04:19:46.654 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:19:46.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1734, R2=1802, Total=3536. Warn if over 250 bubbles per interval.
17-03-18 04:19:47.184 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.009895,
17-03-18 04:19:51.654 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:19:51.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1734, R2=1802, Total=3536. Warn if over 250 bubbles per interval.
17-03-18 04:19:51.924 -07 000000455 INF: WaitCommand(10000) end
17-03-18 04:19:51.924 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:19:51.924 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:19:51.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:19:51.954 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:19:51.954 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:19:51.954 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:19:52.084 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:19:52.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:52.544 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.028963,
17-03-18 04:19:56.664 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:19:56.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:19:57.904 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.99219,
17-03-18 04:19:58.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:58.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:58.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:58.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:59.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:59.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:19:59.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:19:59.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:00.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:00.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:00.084 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:20:00.084 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:20:00.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:00.244 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:20:00.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:20:00.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:00.404 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:20:00.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:20:00.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:20:00.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:20:00.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:00.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:01.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:01.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:20:01.024 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:20:01.664 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:01.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:02.244 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:20:02.244 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:20:02.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:20:02.264 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:20:02.264 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:20:02.264 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:20:02.474 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:20:02.494 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:20:02.494 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:20:02.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:20:02.564 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:20:02.564 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:20:02.664 -07 000000610 INF: =================== Cycle #124, Pumping Reagent IMT (1) ===================
17-03-18 04:20:02.664 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:20:02.664 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:02.694 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:20:02.694 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:20:02.694 -07 000000610 INF: =================== Cycle #124, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:20:02.824 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:20:02.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:03.264 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.981281,
17-03-18 04:20:04.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:04.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:04.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:04.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:04.784 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:20:04.784 -07 000000610 INF: =================== Cycle #124, Pumping Reagent IMT (1) ===================
17-03-18 04:20:04.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:04.944 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:20:04.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:20:05.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:05.104 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:20:05.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:20:05.104 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:20:05.234 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:20:05.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:05.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:05.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:05.724 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:20:05.724 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:20:06.664 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:06.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:06.944 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:20:06.944 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:20:06.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:20:06.964 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:20:06.964 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:20:06.964 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:20:07.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:20:07.214 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:20:07.214 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:20:07.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:20:07.284 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:20:07.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:20:07.384 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:20:07.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:20:07.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:07.414 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:20:07.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:20:07.414 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:20:07.544 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:20:07.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:08.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:08.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:08.484 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:20:08.484 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:20:08.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:08.624 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.99219,
17-03-18 04:20:08.644 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:20:08.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:20:08.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:08.804 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:20:08.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:20:08.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:20:08.934 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:20:08.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:09.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:09.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:09.424 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:20:09.424 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:20:09.424 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 65° ===================
17-03-18 04:20:09.424 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:20:09.424 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:20:09.424 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:20:09.434 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:20:09.434 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:20:09.434 -07 000000447 INF: FPGA: Recv TEC2EN 
17-03-18 04:20:09.444 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:20:09.444 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 65° ===================
17-03-18 04:20:09.444 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:20:09.444 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:20:11.654 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:11.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:13.984 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.02213,
17-03-18 04:20:16.654 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:19.344 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.015368,
17-03-18 04:20:21.654 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:24.704 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.019446,
17-03-18 04:20:26.664 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:26.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:30.064 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.02213,
17-03-18 04:20:31.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:31.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:35.424 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.003063,
17-03-18 04:20:36.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:36.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:39.454 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:20:39.454 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:20:39.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:20:39.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:39.584 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:20:39.584 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:20:39.584 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:20:39.714 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:20:39.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:40.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:40.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:40.324 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 04:20:40.324 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:20:40.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:40.484 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:20:40.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:20:40.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:20:40.644 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:20:40.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:20:40.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:20:40.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:20:40.784 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.981281,
17-03-18 04:20:40.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:41.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:41.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:41.264 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:20:41.264 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:20:41.264 -07 000000479 INF: WaitCommand(30000) start
17-03-18 04:20:41.264 -07 000000625 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:20:41.264 -07 000000625 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:20:41.664 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:41.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:42.484 -07 000000625 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:20:42.484 -07 000000625 INF: LanePump: Xmit /1?\r
17-03-18 04:20:42.514 -07 000000625 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:20:42.514 -07 000000625 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:20:42.644 -07 000000625 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:20:42.684 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:45.024 -07 000000625 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:45.054 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:20:45.474 -07 000000625 INF: LanePump: Xmit /1Q\r
17-03-18 04:20:45.504 -07 000000625 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:20:45.504 -07 000000625 INF: LanePump: Waited 2818 ms for pump motion to complete
17-03-18 04:20:45.504 -07 000000625 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:20:45.504 -07 000000625 INF: ===================  ===================
17-03-18 04:20:46.144 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.964938,
17-03-18 04:20:46.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:46.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:51.504 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.000345,
17-03-18 04:20:51.664 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:51.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:56.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:20:56.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:20:56.864 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.988112,
17-03-18 04:21:01.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:01.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:21:02.224 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.973092,
17-03-18 04:21:06.664 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:06.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:21:07.584 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.993549,
17-03-18 04:21:11.274 -07 000000479 INF: WaitCommand(30000) end
17-03-18 04:21:11.274 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 22° ===================
17-03-18 04:21:11.274 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:21:11.274 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:21:11.284 -07 000000474 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:21:11.284 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 2 ms to get response, and 7 ms overall
17-03-18 04:21:11.284 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:21:11.284 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 04:21:11.294 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:21:11.294 -07 000000610 INF: =================== Cycle #124, Flow Cell Temp 22° ===================
17-03-18 04:21:11.294 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:21:11.294 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:21:11.294 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:21:11.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:11.324 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:21:11.324 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:21:11.324 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:21:11.454 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:21:11.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:11.664 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:11.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1735, R2=1803, Total=3538. Warn if over 250 bubbles per interval.
17-03-18 04:21:12.944 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.994908,
17-03-18 04:21:14.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:14.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:15.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:15.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:15.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:15.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:15.554 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:21:15.554 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:21:15.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:15.714 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:21:15.714 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:21:15.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:15.874 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:21:15.874 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:21:15.874 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:21:16.004 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:21:16.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:16.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:16.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:16.494 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:21:16.494 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:21:16.664 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 5
17-03-18 04:21:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=5, R2=5, Total=10. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:17.714 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:21:17.714 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:21:17.714 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:21:17.734 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:21:17.734 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:21:17.734 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:21:17.884 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:21:17.904 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:21:17.904 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:21:17.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:21:17.974 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:21:17.974 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:21:18.074 -07 000000610 INF: =================== Cycle #124, Pumping Reagent USM (2) ===================
17-03-18 04:21:18.074 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:21:18.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:18.104 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:21:18.104 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:21:18.104 -07 000000610 INF: =================== Cycle #124, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:21:18.234 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:21:18.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:18.304 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.012614,
17-03-18 04:21:19.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:19.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:20.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:20.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:20.194 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:21:20.194 -07 000000610 INF: =================== Cycle #124, Pumping Reagent USM (2) ===================
17-03-18 04:21:20.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:20.354 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:21:20.354 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:21:20.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:20.514 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:21:20.514 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:21:20.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:21:20.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:21:20.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:21.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:21.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:21.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:21:21.134 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:21:21.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:22.354 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:21:22.354 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:21:22.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:21:22.374 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:21:22.374 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:21:22.374 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:21:22.524 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:21:22.544 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:21:22.544 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:21:22.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:21:22.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:21:22.614 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:21:22.714 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:21:22.714 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:21:22.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:22.744 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:21:22.744 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:21:22.744 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:21:22.874 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:21:22.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:23.664 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.007176,
17-03-18 04:21:23.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:23.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:23.814 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:21:23.814 -07 000000610 INF: =================== Cycle #124, Pumping Reagent PR2 (3) ===================
17-03-18 04:21:23.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:23.974 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:21:23.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:21:24.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:21:24.134 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:21:24.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:21:24.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:21:24.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:21:24.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:24.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:24.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:24.754 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:21:24.754 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:21:24.754 -07 000000561 INF: WaitCommand(10000) start
17-03-18 04:21:24.754 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:21:24.754 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:21:25.974 -07 000000479 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:21:25.974 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 04:21:26.004 -07 000000479 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:21:26.004 -07 000000479 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:21:26.134 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:21:26.174 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:26.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:26.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:27.704 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:27.734 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:21:28.154 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 04:21:28.184 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:21:28.184 -07 000000479 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:21:28.184 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:21:28.184 -07 000000479 INF: ===================  ===================
17-03-18 04:21:29.024 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.004458,
17-03-18 04:21:31.664 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:31.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:34.384 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.974486,
17-03-18 04:21:34.764 -07 000000561 INF: WaitCommand(10000) end
17-03-18 04:21:34.764 -07 000000610 INF: =================== Cycle #124, Imaging ===================
17-03-18 04:21:34.764 -07 000000610 INF: Imaging Cycle 124: ScanTilesCommand Cycle 124 time start.
17-03-18 04:21:34.764 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:21:34.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:21:34.794 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:21:34.794 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:21:34.794 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:21:35.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:21:35.114 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:21:35.114 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:21:35.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:21:35.184 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:21:35.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:35.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:35.184 -07 000000444 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:21:35.184 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:35.184 -07 000000444 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:21:35.194 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-18 04:21:35.194 -07 000000444 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:21:35.194 -07 000000444 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:21:35.194 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23137
17-03-18 04:21:35.204 -07 000000444 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:35.204 -07 000000444 INF: RedLED: Using Red data: Photodiode ADC 23137 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.7 mW
17-03-18 04:21:35.204 -07 000000444 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:21:35.204 -07 000000608 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:21:35.214 -07 000000444 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:35.214 -07 000000444 INF: RedLED: LED was on for 19 ms
17-03-18 04:21:35.214 -07 000000444 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 04:21:35.214 -07 000000444 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:21:35.214 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:35.214 -07 000000444 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:21:35.214 -07 000000012 INF: FPGA: Recv EXLED2ON 
17-03-18 04:21:35.224 -07 000000444 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:21:35.224 -07 000000444 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:21:35.224 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2104
17-03-18 04:21:35.234 -07 000000444 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:35.234 -07 000000444 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-18 04:21:35.234 -07 000000444 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:21:35.234 -07 000000608 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:21:35.244 -07 000000444 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:35.244 -07 000000444 INF: GreenLED: LED was on for 20 ms
17-03-18 04:21:35.244 -07 000000444 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:21:35.244 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:21:35.244 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 04:21:35.254 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:21:35.254 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:21:35.754 -07 000000444 INF: FPGA: Recv EMOUT
17-03-18 04:21:35.754 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:21:35.754 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:21:35.754 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 04:21:35.764 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:21:35.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:21:35.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126683322031479. ------
17-03-18 04:21:35.764 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:35.764 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17843 mm
17-03-18 04:21:35.764 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:21:35.764 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:21:35.764 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-18 04:21:35.764 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38978, sync = True, waitForSettling = False)
17-03-18 04:21:35.764 -07 000000424 INF: Z Motor: Moving to -0.178430 mm, started at -0.126683 mm, distance = -51.75 um
17-03-18 04:21:35.764 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:35.774 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:21:35.774 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:35.774 -07 000000444 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:21:35.784 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:35.784 -07 000000608 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:35.784 -07 000000608 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:21:35.784 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:21:35.784 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:21:35.794 -07 000000424 INF: FPGA: Xmit ZDACW 38978\n [Z Motor]
17-03-18 04:21:35.794 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:21:35.804 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:21:35.804 -07 000000424 INF: FPGA: 'ZDACW 38978' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:21:35.814 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:35.814 -07 000000444 INF: FPGA: Recv ZDACR 38978
17-03-18 04:21:35.824 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:21:35.824 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:21:35.984 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:21:35.984 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:21:36.664 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:36.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:37.484 -07 000000444 INF: FPGA: Recv YMVTO 122703 24777
17-03-18 04:21:37.484 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 04:21:37.484 -07 000000608 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:21:37.484 -07 000000608 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-18 04:21:37.484 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.469 mm, average velocity = 9.067 mm/sec
17-03-18 04:21:39.744 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.989471,
17-03-18 04:21:40.334 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:40.334 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:21:40.344 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:40.344 -07 000000608 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:40.374 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:21:40.374 -07 000000608 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:21:40.374 -07 000000608 INF: Y Motor: Moved to 59.9102 after 4602 ms
17-03-18 04:21:40.374 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178430 mm (DAC = 38978)
17-03-18 04:21:40.374 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.374 -07 000000424 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:21:40.384 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:21:40.384 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.384 -07 000000479 INF: FPGA: Recv ZSGSRD 37062
17-03-18 04:21:40.394 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:40.394 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.394 -07 000000424 INF: FPGA: Recv ZSGSRD 37060
17-03-18 04:21:40.404 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:40.414 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.414 -07 000000467 INF: FPGA: Recv ZSGSRD 37076
17-03-18 04:21:40.424 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:21:40.424 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.424 -07 000000424 INF: FPGA: Recv ZSGSRD 37067
17-03-18 04:21:40.434 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:40.444 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.444 -07 000000561 INF: FPGA: Recv ZSGSRD 37065
17-03-18 04:21:40.454 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:21:40.454 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.454 -07 000000444 INF: FPGA: Recv ZSGSRD 37069
17-03-18 04:21:40.464 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:40.484 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.484 -07 000000479 INF: FPGA: Recv ZSGSRD 37066
17-03-18 04:21:40.494 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:21:40.494 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.494 -07 000000608 INF: FPGA: Recv ZSGSRD 37069
17-03-18 04:21:40.504 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:40.514 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:40.514 -07 000000591 INF: FPGA: Recv ZSGSRD 37064
17-03-18 04:21:40.524 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:21:40.524 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:40.524 -07 000000444 INF: FPGA: Recv ZPIEZORD 33215
17-03-18 04:21:40.534 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:40.534 -07 000000012 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.5 V.
17-03-18 04:21:40.534 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37067 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37066 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37060 (-177.5 uncal um), Max = 37076 (-177.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:21:40.534 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37067, posNoise = 9, negNoise = 7
17-03-18 04:21:40.534 -07 000000012 INF: Z Motor: After move to -0.178430, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:40.534 -07 000000012 INF: Z Motor: Settle wait time = 4605 ms, measure time = 156 ms (allowed 150 ms), total time = 4761 ms
17-03-18 04:21:40.534 -07 000000012 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms
17-03-18 04:21:40.534 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 04:21:40.534 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:21:40.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:40.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:40.534 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:40.534 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:40.534 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:21:40.534 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:40.544 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:40.544 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:21:40.564 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:21:40.564 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:21:40.564 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:21:40.564 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:21:40.584 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:21:40.584 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:21:40.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:21:40.634 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:21:40.924 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:21:40.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:21:40.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:21:40.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595368952, 0x0, 559484976) start.
17-03-18 04:21:40.964 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:21:40.964 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:21:40.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:21:41.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595368952, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:21:41.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:41.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:21:41.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:21:41.164 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:41.164 -07 000000479 INF: Image SNR check: start
17-03-18 04:21:41.164 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:41.174 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:21:41.174 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:21:41.174 -07 000000479 INF: Image SNR check: pass  [peak (Max-Min)=143.99]
17-03-18 04:21:41.174 -07 000000479 INF: Autofocus start
17-03-18 04:21:41.174 -07 000000479 INF: MeasureProfile start
17-03-18 04:21:41.184 -07 000000479 INF: MeasureProfile done
17-03-18 04:21:41.184 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:21:41.184 -07 000000479 INF: Autofocus finished
17-03-18 04:21:41.374 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:21:41.374 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 04:21:41.374 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178449623469788. ----------
17-03-18 04:21:41.384 -07 000000610 INF: Cycle	124	Tile	1	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:21:41.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37510, sync = True, waitForSettling = True)
17-03-18 04:21:41.384 -07 000000610 INF: Z Motor: Moving to -0.171710 mm, started at -0.178450 mm, distance = 6.74 um
17-03-18 04:21:41.384 -07 000000610 INF: FPGA: Xmit ZDACW 37510\n [Z Motor]
17-03-18 04:21:41.384 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:21:41.394 -07 000000610 INF: FPGA: 'ZDACW 37510' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:21:41.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:41.394 -07 000000561 INF: FPGA: Recv ZDACR 37510
17-03-18 04:21:41.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:21:41.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.554 -07 000000444 INF: FPGA: Recv ZSGSRD 36019
17-03-18 04:21:41.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:41.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.564 -07 000000561 INF: FPGA: Recv ZSGSRD 36022
17-03-18 04:21:41.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36022
17-03-18 04:21:41.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.584 -07 000000561 INF: FPGA: Recv ZSGSRD 36018
17-03-18 04:21:41.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.594 -07 000000444 INF: FPGA: Recv ZSGSRD 36017
17-03-18 04:21:41.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.604 -07 000000444 INF: FPGA: Recv ZSGSRD 36017
17-03-18 04:21:41.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.614 -07 000000012 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:21:41.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.624 -07 000000012 INF: FPGA: Recv ZSGSRD 36028
17-03-18 04:21:41.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.634 -07 000000444 INF: FPGA: Recv ZSGSRD 36015
17-03-18 04:21:41.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:41.644 -07 000000012 INF: FPGA: Recv ZSGSRD 36021
17-03-18 04:21:41.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:41.654 -07 000000444 INF: FPGA: Recv ZPIEZORD 31906
17-03-18 04:21:41.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:41.664 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.1 V.
17-03-18 04:21:41.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36020 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36020 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36015 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:21:41.664 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36020, posNoise = 8, negNoise = 5
17-03-18 04:21:41.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:41.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:41.664 -07 000000610 INF: Z Motor: After move to -0.171710, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:41.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:21:41.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:41.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:41.664 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:41.664 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:41.664 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:21:41.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:41.664 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:21:41.664 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:21:41.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:41.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:21:41.664 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:21:41.664 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:21:41.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:21:41.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:21:41.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:21:41.684 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:21:41.694 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 04:21:41.694 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:21:41.694 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:21:41.694 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:21:41.704 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:21:41.704 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 04:21:41.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37687 150\n [Camera]
17-03-18 04:21:41.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:21:42.334 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:21:42.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:21:42.334 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:42.334 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:42.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 04:21:42.334 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:21:42.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:21:42.334 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:42.334 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:42.334 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:21:42.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37687 804
17-03-18 04:21:42.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:21:42.734 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:21:42.734 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:21:42.734 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:42.734 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:21:42.734 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:21:42.734 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:42.744 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:21:42.744 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:21:42.744 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:21:42.754 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 04:21:42.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:21:42.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:21:42.874 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:42.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:21:42.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:21:42.994 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:42.994 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:42.994 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:21:43.004 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:43.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:21:43.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:21:43.064 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:21:43.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37687 150' command took 4 ms to send, 1345 ms to get response, and 1356 ms overall
17-03-18 04:21:43.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:21:43.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171723473357365. ------
17-03-18 04:21:43.074 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:43.074 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17797 mm
17-03-18 04:21:43.074 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:21:43.074 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:21:43.074 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:43.074 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38877, sync = True, waitForSettling = False)
17-03-18 04:21:43.074 -07 000000479 INF: Z Motor: Moving to -0.177967 mm, started at -0.171723 mm, distance = -6.24 um
17-03-18 04:21:43.074 -07 000000444 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:21:43.084 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:43.084 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:43.084 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:21:43.094 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:21:43.094 -07 000000479 INF: FPGA: Xmit ZDACW 38877\n [Z Motor]
17-03-18 04:21:43.094 -07 000000444 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:43.094 -07 000000444 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:21:43.094 -07 000000444 INF: Y Motor: Moving 1332 steps2
17-03-18 04:21:43.094 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:21:43.104 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:21:43.104 -07 000000479 INF: FPGA: 'ZDACW 38877' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:21:43.114 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:21:43.124 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:43.124 -07 000000467 INF: FPGA: Recv ZDACR 38877
17-03-18 04:21:43.134 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:21:43.134 -07 000000479 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 04:21:43.304 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:21:43.304 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:21:43.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:21:43.394 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:21:43.394 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:43.394 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:21:43.394 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:21:43.394 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:43.404 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:21:43.404 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 04:21:43.404 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:21:43.414 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:21:43.494 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:21:43.494 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 04:21:43.534 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:43.534 -07 000000012 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:21:43.544 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:43.544 -07 000000444 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:43.544 -07 000000444 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:21:43.544 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.832 mm, average velocity = 2.081 mm/sec
17-03-18 04:21:44.494 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:44.494 -07 000000479 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:21:44.504 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:44.504 -07 000000444 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:44.534 -07 000000444 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:21:44.534 -07 000000444 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:21:44.534 -07 000000444 INF: Y Motor: Moved to 60.7324 after 1456 ms (table move)
17-03-18 04:21:44.534 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177967 mm (DAC = 38877)
17-03-18 04:21:44.534 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.534 -07 000000012 INF: FPGA: Recv ZSGSRD 36997
17-03-18 04:21:44.544 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:21:44.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.544 -07 000000479 INF: FPGA: Recv ZSGSRD 36998
17-03-18 04:21:44.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.554 -07 000000611 INF: FPGA: Recv ZSGSRD 36997
17-03-18 04:21:44.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.564 -07 000000444 INF: FPGA: Recv ZSGSRD 36994
17-03-18 04:21:44.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.574 -07 000000479 INF: FPGA: Recv ZSGSRD 36995
17-03-18 04:21:44.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.584 -07 000000611 INF: FPGA: Recv ZSGSRD 36990
17-03-18 04:21:44.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.594 -07 000000591 INF: FPGA: Recv ZSGSRD 36989
17-03-18 04:21:44.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.604 -07 000000608 INF: FPGA: Recv ZSGSRD 36993
17-03-18 04:21:44.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.614 -07 000000591 INF: FPGA: Recv ZSGSRD 36990
17-03-18 04:21:44.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:44.624 -07 000000444 INF: FPGA: Recv ZSGSRD 36997
17-03-18 04:21:44.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.634 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:44.634 -07 000000424 INF: FPGA: Recv ZPIEZORD 33172
17-03-18 04:21:44.644 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:44.644 -07 000000561 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.5 V.
17-03-18 04:21:44.644 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36994 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36994 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36989 (-177.1 uncal um), Max = 36998 (-177.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:21:44.644 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36994, posNoise = 4, negNoise = 5
17-03-18 04:21:44.644 -07 000000561 INF: Z Motor: After move to -0.177967, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:44.644 -07 000000561 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:21:44.644 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:21:44.694 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:21:44.694 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:21:44.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:44.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:44.694 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:44.694 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:21:44.694 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:44.694 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:44.694 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:44.694 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:21:44.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:21:44.704 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:21:44.714 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:21:44.714 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:21:44.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:21:44.764 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:21:45.064 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:21:45.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:21:45.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:21:45.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 04:21:45.104 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.012614,
17-03-18 04:21:45.104 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:21:45.104 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:21:45.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:21:45.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:21:45.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:45.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:21:45.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-18 04:21:45.204 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:45.204 -07 000000591 INF: Autofocus start
17-03-18 04:21:45.204 -07 000000591 INF: MeasureProfile start
17-03-18 04:21:45.204 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:45.214 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:21:45.214 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:21:45.214 -07 000000591 INF: MeasureProfile done
17-03-18 04:21:45.214 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:21:45.214 -07 000000591 INF: Autofocus finished
17-03-18 04:21:45.414 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:21:45.414 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:21:45.414 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.17798065598344. ----------
17-03-18 04:21:45.414 -07 000000610 INF: Cycle	124	Tile	2	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:21:45.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-18 04:21:45.424 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.177981 mm, distance = 6.89 um
17-03-18 04:21:45.424 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-18 04:21:45.424 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:21:45.434 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:45.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:45.434 -07 000000608 INF: FPGA: Recv ZDACR 37374
17-03-18 04:21:45.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:21:45.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.594 -07 000000591 INF: FPGA: Recv ZSGSRD 35927
17-03-18 04:21:45.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:45.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35924
17-03-18 04:21:45.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.614 -07 000000608 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:21:45.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35928
17-03-18 04:21:45.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.634 -07 000000608 INF: FPGA: Recv ZSGSRD 35922
17-03-18 04:21:45.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.644 -07 000000591 INF: FPGA: Recv ZSGSRD 35920
17-03-18 04:21:45.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.654 -07 000000467 INF: FPGA: Recv ZSGSRD 35922
17-03-18 04:21:45.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.664 -07 000000467 INF: FPGA: Recv ZSGSRD 35927
17-03-18 04:21:45.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35924
17-03-18 04:21:45.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:45.684 -07 000000591 INF: FPGA: Recv ZSGSRD 35918
17-03-18 04:21:45.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:45.694 -07 000000608 INF: FPGA: Recv ZPIEZORD 31738
17-03-18 04:21:45.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:45.704 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 04:21:45.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35924 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35924 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35918 (-170.2 uncal um), Max = 35928 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:21:45.704 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35924, posNoise = 4, negNoise = 6
17-03-18 04:21:45.704 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:45.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:21:45.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:45.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:45.704 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:45.704 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:45.704 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:21:45.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:45.704 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:21:45.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:21:45.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:45.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:21:45.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:21:45.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:21:45.714 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:21:45.714 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:21:45.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:21:45.714 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:21:45.724 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:21:45.724 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:21:45.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:21:45.724 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:21:45.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37551 150\n [Camera]
17-03-18 04:21:45.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:21:46.344 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:21:46.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:21:46.354 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:46.354 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:21:46.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:21:46.354 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:46.354 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:46.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:21:46.354 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:46.354 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:21:46.544 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 804
17-03-18 04:21:46.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:46.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:46.694 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:21:46.754 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:21:46.754 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:21:46.754 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:46.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:21:46.754 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:21:46.754 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:46.754 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:21:46.764 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:21:46.764 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:21:46.764 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:21:46.894 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:21:46.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:21:46.894 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:47.004 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:21:47.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:21:47.004 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:47.014 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:47.014 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:47.014 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:21:47.014 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:21:47.084 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:21:47.084 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:21:47.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37551 150' command took 2 ms to send, 1344 ms to get response, and 1355 ms overall
17-03-18 04:21:47.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:21:47.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171106748991756. ------
17-03-18 04:21:47.084 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:47.084 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17785 mm
17-03-18 04:21:47.084 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:21:47.094 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:21:47.094 -07 000000611 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:21:47.094 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:47.094 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:47.094 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 04:21:47.094 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38852, sync = True, waitForSettling = False)
17-03-18 04:21:47.094 -07 000000012 INF: Z Motor: Moving to -0.177853 mm, started at -0.171107 mm, distance = -6.75 um
17-03-18 04:21:47.094 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:21:47.104 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:21:47.104 -07 000000611 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:47.104 -07 000000611 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:21:47.104 -07 000000611 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:21:47.104 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:21:47.114 -07 000000012 INF: FPGA: Xmit ZDACW 38852\n [Z Motor]
17-03-18 04:21:47.114 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:21:47.124 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:21:47.124 -07 000000012 INF: FPGA: 'ZDACW 38852' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:21:47.134 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:47.134 -07 000000591 INF: FPGA: Recv ZDACR 38852
17-03-18 04:21:47.144 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:21:47.144 -07 000000012 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:21:47.304 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:21:47.304 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:21:47.394 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:21:47.394 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:21:47.394 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:47.404 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:47.404 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:21:47.404 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:21:47.404 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:47.404 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:21:47.414 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:47.414 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 04:21:47.504 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:21:47.504 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 04:21:47.544 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:47.554 -07 000000467 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:21:47.554 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:21:47.554 -07 000000611 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:47.554 -07 000000611 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:21:47.554 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.100 mm/sec
17-03-18 04:21:48.504 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:48.504 -07 000000591 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:21:48.514 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:48.514 -07 000000611 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:48.544 -07 000000611 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:21:48.544 -07 000000611 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:21:48.544 -07 000000611 INF: Y Motor: Moved to 61.5630 after 1448 ms (table move)
17-03-18 04:21:48.544 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177853 mm (DAC = 38852)
17-03-18 04:21:48.544 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.544 -07 000000467 INF: FPGA: Recv ZSGSRD 36980
17-03-18 04:21:48.554 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:21:48.554 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.554 -07 000000012 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:21:48.564 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.564 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.564 -07 000000608 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:21:48.574 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.574 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.574 -07 000000611 INF: FPGA: Recv ZSGSRD 36968
17-03-18 04:21:48.584 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.584 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.584 -07 000000467 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:21:48.594 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.594 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.594 -07 000000424 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:21:48.604 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.604 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.604 -07 000000424 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:21:48.614 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.614 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.614 -07 000000467 INF: FPGA: Recv ZSGSRD 36984
17-03-18 04:21:48.624 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.624 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.624 -07 000000467 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:21:48.634 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.634 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:48.634 -07 000000479 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:21:48.644 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:48.644 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:48.644 -07 000000424 INF: FPGA: Recv ZPIEZORD 33161
17-03-18 04:21:48.654 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:48.654 -07 000000444 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.4 V.
17-03-18 04:21:48.654 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36974 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36968 (-176.9 uncal um), Max = 36984 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:21:48.654 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 8, negNoise = 8
17-03-18 04:21:48.654 -07 000000444 INF: Z Motor: After move to -0.177853, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:48.654 -07 000000444 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:21:48.654 -07 000000444 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:21:48.704 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:21:48.704 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:21:48.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:48.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:48.704 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:48.704 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:48.704 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:21:48.704 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:48.704 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:48.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:21:48.714 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:21:48.714 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:21:48.714 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:21:48.714 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:21:48.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:21:48.764 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:21:49.064 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:21:49.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:21:49.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:21:49.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 04:21:49.104 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:21:49.104 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:21:49.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:21:49.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:21:49.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:49.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:21:49.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:21:49.204 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:49.204 -07 000000479 INF: Autofocus start
17-03-18 04:21:49.204 -07 000000479 INF: MeasureProfile start
17-03-18 04:21:49.204 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:49.214 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:21:49.214 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:21:49.214 -07 000000479 INF: MeasureProfile done
17-03-18 04:21:49.214 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:21:49.214 -07 000000479 INF: Autofocus finished
17-03-18 04:21:49.414 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:21:49.414 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:21:49.414 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177865020164888. ----------
17-03-18 04:21:49.414 -07 000000610 INF: Cycle	124	Tile	3	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:21:49.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37385, sync = True, waitForSettling = True)
17-03-18 04:21:49.424 -07 000000610 INF: Z Motor: Moving to -0.171138 mm, started at -0.177865 mm, distance = 6.73 um
17-03-18 04:21:49.424 -07 000000610 INF: FPGA: Xmit ZDACW 37385\n [Z Motor]
17-03-18 04:21:49.424 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:21:49.434 -07 000000610 INF: FPGA: 'ZDACW 37385' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:21:49.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:49.434 -07 000000479 INF: FPGA: Recv ZDACR 37385
17-03-18 04:21:49.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:21:49.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.594 -07 000000424 INF: FPGA: Recv ZSGSRD 35931
17-03-18 04:21:49.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.604 -07 000000424 INF: FPGA: Recv ZSGSRD 35936
17-03-18 04:21:49.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:49.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.614 -07 000000479 INF: FPGA: Recv ZSGSRD 35929
17-03-18 04:21:49.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35926
17-03-18 04:21:49.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.634 -07 000000479 INF: FPGA: Recv ZSGSRD 35934
17-03-18 04:21:49.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.644 -07 000000479 INF: FPGA: Recv ZSGSRD 35938
17-03-18 04:21:49.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.654 -07 000000424 INF: FPGA: Recv ZSGSRD 35928
17-03-18 04:21:49.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35932
17-03-18 04:21:49.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.674 -07 000000424 INF: FPGA: Recv ZSGSRD 35934
17-03-18 04:21:49.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:49.684 -07 000000479 INF: FPGA: Recv ZSGSRD 35931
17-03-18 04:21:49.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:49.694 -07 000000012 INF: FPGA: Recv ZPIEZORD 31740
17-03-18 04:21:49.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:49.704 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.2 V.
17-03-18 04:21:49.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35932 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35926 (-170.2 uncal um), Max = 35938 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:21:49.704 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35932, posNoise = 6, negNoise = 6
17-03-18 04:21:49.704 -07 000000610 INF: Z Motor: After move to -0.171138, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:49.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:21:49.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:49.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:49.704 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:49.704 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:21:49.704 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:49.704 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:49.704 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:21:49.704 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:21:49.704 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:49.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:21:49.704 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:21:49.704 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:21:49.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:21:49.714 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:21:49.714 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:21:49.714 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:21:49.714 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:21:49.724 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:21:49.724 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:21:49.724 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:21:49.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37561 150\n [Camera]
17-03-18 04:21:49.924 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:21:50.344 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:21:50.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:21:50.344 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:50.344 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:21:50.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:21:50.344 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:50.344 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:50.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:21:50.344 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:50.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) start.
17-03-18 04:21:50.464 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.018051,
17-03-18 04:21:50.534 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37561 804
17-03-18 04:21:50.684 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:21:50.744 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:21:50.744 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:21:50.744 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:50.744 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:21:50.744 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:21:50.744 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:50.744 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:50.744 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:21:50.754 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:50.754 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:21:50.884 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:21:50.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:21:50.884 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:50.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:21:50.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:21:51.004 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:51.004 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:51.004 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:21:51.004 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:51.004 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:21:51.074 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:21:51.074 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:21:51.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37561 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-18 04:21:51.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:21:51.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.17115814268889. ------
17-03-18 04:21:51.084 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:51.084 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17740 mm
17-03-18 04:21:51.084 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:21:51.084 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:21:51.084 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 04:21:51.084 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38754, sync = True, waitForSettling = False)
17-03-18 04:21:51.084 -07 000000424 INF: Z Motor: Moving to -0.177404 mm, started at -0.171158 mm, distance = -6.25 um
17-03-18 04:21:51.084 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:51.094 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:21:51.094 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:51.094 -07 000000608 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:21:51.104 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:21:51.104 -07 000000561 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:51.104 -07 000000424 INF: FPGA: Xmit ZDACW 38754\n [Z Motor]
17-03-18 04:21:51.104 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:21:51.104 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:21:51.104 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:21:51.114 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:21:51.114 -07 000000424 INF: FPGA: 'ZDACW 38754' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:21:51.124 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:21:51.134 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:51.134 -07 000000608 INF: FPGA: Recv ZDACR 38754
17-03-18 04:21:51.144 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:21:51.144 -07 000000424 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:21:51.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:21:51.384 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:21:51.384 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:51.394 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:51.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:21:51.394 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:21:51.394 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:51.394 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:21:51.394 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:51.394 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 04:21:52.324 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:21:52.324 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:21:52.324 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:52.324 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1190 ms to get response, and 1213 ms overall
17-03-18 04:21:52.324 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1200 ms to get response, and 1230 ms overall
17-03-18 04:21:52.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:52.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:52.374 -07 000000611 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:21:52.384 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:52.384 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:52.384 -07 000000561 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:21:52.384 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1213 ms, distance = 0.840 mm, average velocity = 0.692 mm/sec
17-03-18 04:21:53.334 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:53.334 -07 000000467 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:21:53.344 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:53.344 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:53.374 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:21:53.374 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:21:53.374 -07 000000561 INF: Y Motor: Moved to 62.3950 after 2284 ms (table move)
17-03-18 04:21:53.374 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177404 mm (DAC = 38754)
17-03-18 04:21:53.374 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.374 -07 000000444 INF: FPGA: Recv ZSGSRD 36906
17-03-18 04:21:53.384 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:21:53.384 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.384 -07 000000444 INF: FPGA: Recv ZSGSRD 36903
17-03-18 04:21:53.394 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.394 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.394 -07 000000561 INF: FPGA: Recv ZSGSRD 36902
17-03-18 04:21:53.404 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.404 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.404 -07 000000611 INF: FPGA: Recv ZSGSRD 36902
17-03-18 04:21:53.414 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.414 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.414 -07 000000561 INF: FPGA: Recv ZSGSRD 36907
17-03-18 04:21:53.424 -07 000000479 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.424 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.424 -07 000000561 INF: FPGA: Recv ZSGSRD 36909
17-03-18 04:21:53.434 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.434 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.434 -07 000000611 INF: FPGA: Recv ZSGSRD 36903
17-03-18 04:21:53.444 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.444 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.444 -07 000000444 INF: FPGA: Recv ZSGSRD 36899
17-03-18 04:21:53.454 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.454 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.454 -07 000000444 INF: FPGA: Recv ZSGSRD 36906
17-03-18 04:21:53.464 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.464 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:53.464 -07 000000561 INF: FPGA: Recv ZSGSRD 36894
17-03-18 04:21:53.474 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.474 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:53.474 -07 000000561 INF: FPGA: Recv ZPIEZORD 33067
17-03-18 04:21:53.484 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:53.484 -07 000000479 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.5 V.
17-03-18 04:21:53.484 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36903 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36903 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36894 (-176.4 uncal um), Max = 36909 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:21:53.484 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36903, posNoise = 6, negNoise = 9
17-03-18 04:21:53.484 -07 000000479 INF: Z Motor: After move to -0.177404, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:53.484 -07 000000479 INF: Z Motor: Settle wait time = 2287 ms, measure time = 106 ms (allowed 150 ms), total time = 2393 ms
17-03-18 04:21:53.484 -07 000000479 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:21:53.534 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2445 ms
17-03-18 04:21:53.534 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:21:53.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:53.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:53.534 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:21:53.534 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:53.534 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:53.534 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:53.534 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:53.534 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:21:53.544 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:21:53.544 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:21:53.544 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:21:53.544 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:21:53.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:21:53.594 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:21:53.894 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:21:53.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:21:53.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:21:53.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 04:21:53.934 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:21:53.934 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:21:53.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:21:54.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:21:54.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:54.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:21:54.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:21:54.034 -07 000000444 INF: Autofocus start
17-03-18 04:21:54.034 -07 000000444 INF: MeasureProfile start
17-03-18 04:21:54.034 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:54.034 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:54.044 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:21:54.044 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:21:54.054 -07 000000444 INF: MeasureProfile done
17-03-18 04:21:54.054 -07 000000444 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:21:54.054 -07 000000444 INF: Autofocus finished
17-03-18 04:21:54.244 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:21:54.244 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:21:54.244 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17739605267854. ----------
17-03-18 04:21:54.244 -07 000000610 INF: Cycle	124	Tile	4	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:21:54.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37234, sync = True, waitForSettling = True)
17-03-18 04:21:54.254 -07 000000610 INF: Z Motor: Moving to -0.170446 mm, started at -0.177396 mm, distance = 6.95 um
17-03-18 04:21:54.254 -07 000000610 INF: FPGA: Xmit ZDACW 37234\n [Z Motor]
17-03-18 04:21:54.254 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:21:54.264 -07 000000610 INF: FPGA: 'ZDACW 37234' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:54.264 -07 000000438 INF: FPGA: Recv ZDACR 37234
17-03-18 04:21:54.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:21:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.424 -07 000000591 INF: FPGA: Recv ZSGSRD 35828
17-03-18 04:21:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.434 -07 000000591 INF: FPGA: Recv ZSGSRD 35819
17-03-18 04:21:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.444 -07 000000591 INF: FPGA: Recv ZSGSRD 35818
17-03-18 04:21:54.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.454 -07 000000608 INF: FPGA: Recv ZSGSRD 35819
17-03-18 04:21:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.464 -07 000000608 INF: FPGA: Recv ZSGSRD 35826
17-03-18 04:21:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.474 -07 000000591 INF: FPGA: Recv ZSGSRD 35824
17-03-18 04:21:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.484 -07 000000591 INF: FPGA: Recv ZSGSRD 35828
17-03-18 04:21:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.494 -07 000000424 INF: FPGA: Recv ZSGSRD 35817
17-03-18 04:21:54.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.504 -07 000000591 INF: FPGA: Recv ZSGSRD 35820
17-03-18 04:21:54.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:54.514 -07 000000424 INF: FPGA: Recv ZSGSRD 35829
17-03-18 04:21:54.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:54.524 -07 000000591 INF: FPGA: Recv ZPIEZORD 31620
17-03-18 04:21:54.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:54.534 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.3 V.
17-03-18 04:21:54.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35823 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35817 (-169.5 uncal um), Max = 35829 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:21:54.534 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35823, posNoise = 6, negNoise = 6
17-03-18 04:21:54.534 -07 000000610 INF: Z Motor: After move to -0.170446, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:54.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:21:54.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:54.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:54.534 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:54.534 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:54.534 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:21:54.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:21:54.534 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:21:54.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:21:54.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:21:54.534 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:54.534 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:54.534 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:21:54.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:21:54.544 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:21:54.544 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:21:54.544 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:21:54.544 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:21:54.544 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:21:54.554 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:21:54.554 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:21:54.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37411 150\n [Camera]
17-03-18 04:21:54.754 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:21:55.174 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:21:55.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:21:55.174 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:55.174 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:21:55.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:21:55.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:55.174 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:55.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:21:55.174 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:55.174 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) start.
17-03-18 04:21:55.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37411 804
17-03-18 04:21:55.514 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:21:55.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:21:55.574 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:21:55.574 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:55.574 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:55.574 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:21:55.574 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:21:55.574 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:21:55.574 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:55.584 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:21:55.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:21:55.714 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:21:55.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:21:55.824 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:21:55.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:21:55.824 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:55.824 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:55.834 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.999021,
17-03-18 04:21:55.834 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:55.834 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:21:55.834 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:55.834 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:21:55.904 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:21:55.904 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:21:55.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37411 150' command took 2 ms to send, 1346 ms to get response, and 1354 ms overall
17-03-18 04:21:55.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:21:55.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170457903565438. ------
17-03-18 04:21:55.914 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17705 mm
17-03-18 04:21:55.914 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:21:55.914 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:56.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:21:56.234 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:21:56.234 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:56.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:21:56.234 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:21:56.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:56.234 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:21:56.234 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:21:56.234 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:21:56.244 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:21:56.254 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:21:56.254 -07 000000591 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:21:56.254 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:56.254 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:56.254 -07 000000561 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:21:56.254 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 334 ms to get response, and 341 ms overall
17-03-18 04:21:56.254 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38676, sync = True, waitForSettling = False)
17-03-18 04:21:56.254 -07 000000561 INF: Z Motor: Moving to -0.177047 mm, started at -0.170458 mm, distance = -6.59 um
17-03-18 04:21:56.264 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:56.264 -07 000000591 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:56.264 -07 000000591 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:21:56.264 -07 000000591 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:21:56.264 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:21:56.274 -07 000000561 INF: FPGA: Xmit ZDACW 38676\n [Z Motor]
17-03-18 04:21:56.284 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:21:57.034 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:21:57.034 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:21:57.034 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:21:57.034 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:21:57.034 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 761 ms to get response, and 776 ms overall
17-03-18 04:21:57.034 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 741 ms to get response, and 770 ms overall
17-03-18 04:21:57.034 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:21:57.034 -07 000000561 INF: FPGA: 'ZDACW 38676' command took 0 ms to send, 750 ms to get response, and 775 ms overall
17-03-18 04:21:57.034 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:57.034 -07 000000608 INF: FPGA: Recv ZDACR 38676
17-03-18 04:21:57.044 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:21:57.044 -07 000000561 INF: Z Motor: MoveAbsStepped took 784 ms (did NOT wait for settling yet))
17-03-18 04:21:57.084 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:57.084 -07 000000608 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:21:57.094 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:21:57.094 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:57.094 -07 000000591 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:21:57.094 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 771 ms, distance = 0.838 mm, average velocity = 1.086 mm/sec
17-03-18 04:21:58.044 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:21:58.044 -07 000000608 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:21:58.054 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:58.054 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:21:58.084 -07 000000591 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:21:58.084 -07 000000591 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:21:58.084 -07 000000591 INF: Y Motor: Moved to 63.2236 after 1830 ms (table move)
17-03-18 04:21:58.084 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177047 mm (DAC = 38676)
17-03-18 04:21:58.084 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.084 -07 000000591 INF: FPGA: Recv ZSGSRD 36850
17-03-18 04:21:58.094 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:21:58.094 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.094 -07 000000591 INF: FPGA: Recv ZSGSRD 36849
17-03-18 04:21:58.104 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.104 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.104 -07 000000467 INF: FPGA: Recv ZSGSRD 36849
17-03-18 04:21:58.114 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.114 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.114 -07 000000608 INF: FPGA: Recv ZSGSRD 36851
17-03-18 04:21:58.124 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.124 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.124 -07 000000561 INF: FPGA: Recv ZSGSRD 36850
17-03-18 04:21:58.134 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.134 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.134 -07 000000608 INF: FPGA: Recv ZSGSRD 36851
17-03-18 04:21:58.144 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.144 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.144 -07 000000591 INF: FPGA: Recv ZSGSRD 36857
17-03-18 04:21:58.154 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.154 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.154 -07 000000561 INF: FPGA: Recv ZSGSRD 36850
17-03-18 04:21:58.164 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.164 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.164 -07 000000608 INF: FPGA: Recv ZSGSRD 36845
17-03-18 04:21:58.174 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.174 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:58.174 -07 000000591 INF: FPGA: Recv ZSGSRD 36847
17-03-18 04:21:58.184 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.184 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:58.184 -07 000000561 INF: FPGA: Recv ZPIEZORD 33014
17-03-18 04:21:58.194 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:58.194 -07 000000444 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.5 V.
17-03-18 04:21:58.194 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36850 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36850 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36845 (-176.1 uncal um), Max = 36857 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:21:58.194 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36850, posNoise = 7, negNoise = 5
17-03-18 04:21:58.194 -07 000000444 INF: Z Motor: After move to -0.177047, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:58.194 -07 000000444 INF: Z Motor: Settle wait time = 1829 ms, measure time = 106 ms (allowed 150 ms), total time = 1935 ms
17-03-18 04:21:58.194 -07 000000444 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:21:58.244 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2327 ms
17-03-18 04:21:58.244 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:21:58.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:58.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:58.244 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:21:58.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:58.244 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:58.244 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:58.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:21:58.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:21:58.254 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:21:58.254 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:21:58.254 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:21:58.254 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:21:58.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:21:58.304 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:21:58.604 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:21:58.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:21:58.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:21:58.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 04:21:58.644 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:21:58.644 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 04:21:58.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:21:58.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:21:58.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:21:58.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:21:58.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:21:58.844 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:21:58.844 -07 000000467 INF: Autofocus start
17-03-18 04:21:58.844 -07 000000467 INF: MeasureProfile start
17-03-18 04:21:58.844 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:21:58.854 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:21:58.854 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:21:58.854 -07 000000467 INF: MeasureProfile done
17-03-18 04:21:58.854 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:21:58.854 -07 000000467 INF: Autofocus finished
17-03-18 04:21:59.054 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:21:59.054 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:21:59.054 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177055569435026. ----------
17-03-18 04:21:59.054 -07 000000610 INF: Cycle	124	Tile	5	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:21:59.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37208, sync = True, waitForSettling = True)
17-03-18 04:21:59.064 -07 000000610 INF: Z Motor: Moving to -0.170327 mm, started at -0.177056 mm, distance = 6.73 um
17-03-18 04:21:59.064 -07 000000610 INF: FPGA: Xmit ZDACW 37208\n [Z Motor]
17-03-18 04:21:59.064 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:21:59.074 -07 000000610 INF: FPGA: 'ZDACW 37208' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:21:59.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:21:59.074 -07 000000438 INF: FPGA: Recv ZDACR 37208
17-03-18 04:21:59.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:21:59.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.234 -07 000000561 INF: FPGA: Recv ZSGSRD 35806
17-03-18 04:21:59.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:21:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.244 -07 000000438 INF: FPGA: Recv ZSGSRD 35812
17-03-18 04:21:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.254 -07 000000444 INF: FPGA: Recv ZSGSRD 35803
17-03-18 04:21:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.264 -07 000000608 INF: FPGA: Recv ZSGSRD 35802
17-03-18 04:21:59.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.274 -07 000000438 INF: FPGA: Recv ZSGSRD 35802
17-03-18 04:21:59.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.284 -07 000000591 INF: FPGA: Recv ZSGSRD 35806
17-03-18 04:21:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.294 -07 000000438 INF: FPGA: Recv ZSGSRD 35801
17-03-18 04:21:59.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.304 -07 000000608 INF: FPGA: Recv ZSGSRD 35797
17-03-18 04:21:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.314 -07 000000561 INF: FPGA: Recv ZSGSRD 35809
17-03-18 04:21:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:21:59.324 -07 000000591 INF: FPGA: Recv ZSGSRD 35808
17-03-18 04:21:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:21:59.334 -07 000000444 INF: FPGA: Recv ZPIEZORD 31606
17-03-18 04:21:59.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:21:59.344 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.3 V.
17-03-18 04:21:59.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35805 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35797 (-169.4 uncal um), Max = 35812 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:21:59.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35805, posNoise = 7, negNoise = 8
17-03-18 04:21:59.344 -07 000000610 INF: Z Motor: After move to -0.170327, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:21:59.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:21:59.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:21:59.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:21:59.344 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:21:59.344 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:21:59.344 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:21:59.344 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:21:59.344 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:21:59.344 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:21:59.344 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:21:59.344 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:21:59.344 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:21:59.344 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:21:59.354 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:21:59.354 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:21:59.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:21:59.354 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:21:59.364 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:21:59.364 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:21:59.364 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:21:59.364 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:21:59.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37385 150\n [Camera]
17-03-18 04:21:59.574 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:21:59.984 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:21:59.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:21:59.994 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:21:59.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:21:59.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:21:59.994 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:21:59.994 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:21:59.994 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:21:59.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) start.
17-03-18 04:21:59.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:22:00.184 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37385 804
17-03-18 04:22:00.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:00.394 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:22:00.394 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:22:00.394 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:00.394 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:00.394 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:22:00.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:22:00.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:22:00.504 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:00.504 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 112 ms.
17-03-18 04:22:00.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 04:22:00.534 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:00.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:00.534 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:00.534 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:00.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:00.534 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:00.534 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:00.534 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:22:00.544 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:00.544 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:22:00.724 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:22:00.724 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:00.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37385 150' command took 2 ms to send, 1345 ms to get response, and 1355 ms overall
17-03-18 04:22:00.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:00.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170342267746886. ------
17-03-18 04:22:00.734 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:00.734 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17641 mm
17-03-18 04:22:00.734 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:00.734 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:22:00.734 -07 000000444 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:22:00.744 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:00.934 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:22:00.934 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:22:00.934 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:00.944 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:22:00.944 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:22:00.944 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:00.944 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:00.944 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:22:00.944 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:00.954 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:22:00.954 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-18 04:22:00.954 -07 000000611 INF: Z Motor: Moving to -0.176411 mm, started at -0.170342 mm, distance = -6.07 um
17-03-18 04:22:00.954 -07 000000611 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-18 04:22:00.964 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:00.964 -07 000000479 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:22:00.964 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 228 ms overall
17-03-18 04:22:00.964 -07 000000444 INF: FPGA: 'YRDPOS' command took 1 ms to send, 210 ms to get response, and 225 ms overall
17-03-18 04:22:00.964 -07 000000444 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:00.964 -07 000000444 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:00.964 -07 000000444 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:22:00.964 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:22:00.964 -07 000000611 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:22:00.964 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:00.974 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:00.984 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:00.984 -07 000000479 INF: FPGA: Recv ZDACR 38537
17-03-18 04:22:00.994 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:22:00.994 -07 000000611 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 04:22:01.164 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:01.164 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:22:01.274 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.974486,
17-03-18 04:22:01.344 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:22:01.344 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 386 ms overall
17-03-18 04:22:01.394 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:01.394 -07 000000611 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:22:01.404 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:01.404 -07 000000444 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:01.404 -07 000000444 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 04:22:01.404 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-18 04:22:01.664 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:01.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:02.354 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:02.354 -07 000000467 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:22:02.364 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:02.364 -07 000000444 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:02.384 -07 000000444 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:02.384 -07 000000444 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:02.384 -07 000000444 INF: Y Motor: Moved to 64.0566 after 1653 ms (table move)
17-03-18 04:22:02.394 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-18 04:22:02.394 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.394 -07 000000467 INF: FPGA: Recv ZSGSRD 36750
17-03-18 04:22:02.404 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:02.404 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.404 -07 000000444 INF: FPGA: Recv ZSGSRD 36752
17-03-18 04:22:02.414 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.414 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.414 -07 000000444 INF: FPGA: Recv ZSGSRD 36752
17-03-18 04:22:02.424 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.424 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.424 -07 000000444 INF: FPGA: Recv ZSGSRD 36753
17-03-18 04:22:02.434 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.434 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.434 -07 000000467 INF: FPGA: Recv ZSGSRD 36753
17-03-18 04:22:02.444 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.444 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.444 -07 000000444 INF: FPGA: Recv ZSGSRD 36749
17-03-18 04:22:02.454 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.454 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.454 -07 000000479 INF: FPGA: Recv ZSGSRD 36745
17-03-18 04:22:02.464 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.464 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.464 -07 000000611 INF: FPGA: Recv ZSGSRD 36747
17-03-18 04:22:02.474 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.474 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.474 -07 000000479 INF: FPGA: Recv ZSGSRD 36753
17-03-18 04:22:02.484 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.484 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:02.484 -07 000000611 INF: FPGA: Recv ZSGSRD 36752
17-03-18 04:22:02.494 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.494 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:02.494 -07 000000444 INF: FPGA: Recv ZPIEZORD 32907
17-03-18 04:22:02.504 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:02.504 -07 000000438 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.5 V.
17-03-18 04:22:02.504 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36751 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36745 (-175.5 uncal um), Max = 36753 (-175.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:22:02.504 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36751, posNoise = 2, negNoise = 6
17-03-18 04:22:02.504 -07 000000438 INF: Z Motor: After move to -0.176411, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:02.504 -07 000000438 INF: Z Motor: Settle wait time = 1432 ms, measure time = 109 ms (allowed 150 ms), total time = 1541 ms
17-03-18 04:22:02.504 -07 000000438 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:02.554 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1817 ms
17-03-18 04:22:02.554 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:02.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:02.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:02.554 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:02.554 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:02.554 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:02.554 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:02.554 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:02.554 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:02.564 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:02.564 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:02.564 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:02.564 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:22:02.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:02.614 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:02.914 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:02.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:02.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:02.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 04:22:02.954 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:02.954 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:02.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:22:03.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:22:03.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:03.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:03.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:22:03.054 -07 000000424 INF: Autofocus start
17-03-18 04:22:03.054 -07 000000424 INF: MeasureProfile start
17-03-18 04:22:03.064 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:03.064 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:03.064 -07 000000424 INF: MeasureProfile done
17-03-18 04:22:03.064 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:22:03.064 -07 000000424 INF: Autofocus finished
17-03-18 04:22:03.074 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:22:03.074 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:03.274 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:03.274 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:03.274 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176419572432992. ----------
17-03-18 04:22:03.274 -07 000000610 INF: Cycle	124	Tile	6	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:03.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37087, sync = True, waitForSettling = True)
17-03-18 04:22:03.284 -07 000000610 INF: Z Motor: Moving to -0.169773 mm, started at -0.176420 mm, distance = 6.65 um
17-03-18 04:22:03.284 -07 000000610 INF: FPGA: Xmit ZDACW 37087\n [Z Motor]
17-03-18 04:22:03.284 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:22:03.294 -07 000000610 INF: FPGA: 'ZDACW 37087' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:03.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:03.294 -07 000000467 INF: FPGA: Recv ZDACR 37087
17-03-18 04:22:03.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:03.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.454 -07 000000438 INF: FPGA: Recv ZSGSRD 35715
17-03-18 04:22:03.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.464 -07 000000467 INF: FPGA: Recv ZSGSRD 35719
17-03-18 04:22:03.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35719
17-03-18 04:22:03.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.484 -07 000000444 INF: FPGA: Recv ZSGSRD 35716
17-03-18 04:22:03.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.494 -07 000000591 INF: FPGA: Recv ZSGSRD 35715
17-03-18 04:22:03.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35715
17-03-18 04:22:03.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35719
17-03-18 04:22:03.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.524 -07 000000479 INF: FPGA: Recv ZSGSRD 35715
17-03-18 04:22:03.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.534 -07 000000424 INF: FPGA: Recv ZSGSRD 35717
17-03-18 04:22:03.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:03.544 -07 000000444 INF: FPGA: Recv ZSGSRD 35715
17-03-18 04:22:03.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:03.554 -07 000000591 INF: FPGA: Recv ZPIEZORD 31474
17-03-18 04:22:03.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:03.564 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.4 V.
17-03-18 04:22:03.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35716 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35716 (-168.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35715 (-168.9 uncal um), Max = 35719 (-168.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 04:22:03.564 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35716, posNoise = 3, negNoise = 1
17-03-18 04:22:03.564 -07 000000610 INF: Z Motor: After move to -0.169773, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:03.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:03.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:03.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:03.564 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:03.564 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:03.564 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:03.564 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:03.564 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:03.564 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:03.564 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:03.564 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:03.574 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:03.574 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:03.574 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:22:03.574 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:03.574 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:22:03.574 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:03.584 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:22:03.584 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:22:03.594 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:22:03.594 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:22:03.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37264 150\n [Camera]
17-03-18 04:22:03.794 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:04.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:04.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:04.214 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:04.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:04.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:04.214 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:04.214 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:04.214 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:22:04.214 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:04.214 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) start.
17-03-18 04:22:04.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37264 804
17-03-18 04:22:04.554 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:04.594 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:22:04.594 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:22:04.594 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:04.604 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:04.604 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1397981344, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:22:04.604 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:22:04.604 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:04.604 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:04.604 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:22:04.604 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:22:04.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:04.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:04.754 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:04.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:04.754 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:04.754 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:22:04.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:04.754 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:04.754 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:04.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:22:04.944 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:04.944 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:04.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37264 150' command took 2 ms to send, 1347 ms to get response, and 1355 ms overall
17-03-18 04:22:04.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:04.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169770512866269. ------
17-03-18 04:22:04.954 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:04.954 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17618 mm
17-03-18 04:22:04.954 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:05.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:22:05.164 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:22:05.164 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:05.164 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:22:05.164 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:22:05.164 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:05.164 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:05.164 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:05.164 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:22:05.174 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:22:05.184 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:22:05.184 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:22:05.184 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:05.184 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:05.184 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 224 ms to get response, and 231 ms overall
17-03-18 04:22:05.184 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38487, sync = True, waitForSettling = False)
17-03-18 04:22:05.184 -07 000000479 INF: Z Motor: Moving to -0.176182 mm, started at -0.169771 mm, distance = -6.41 um
17-03-18 04:22:05.194 -07 000000479 INF: FPGA: Xmit ZDACW 38487\n [Z Motor]
17-03-18 04:22:05.204 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:05.824 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:22:05.824 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:22:05.824 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:05.824 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 630 ms to get response, and 637 ms overall
17-03-18 04:22:05.824 -07 000000611 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:05.824 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:05.824 -07 000000611 INF: Y Motor: Moving 1338 steps-12
17-03-18 04:22:05.824 -07 000000479 INF: FPGA: 'ZDACW 38487' command took 0 ms to send, 620 ms to get response, and 634 ms overall
17-03-18 04:22:05.824 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:05.824 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 610 ms to get response, and 635 ms overall
17-03-18 04:22:05.834 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:05.834 -07 000000424 INF: FPGA: Recv ZDACR 38487
17-03-18 04:22:05.844 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:22:05.844 -07 000000479 INF: Z Motor: MoveAbsStepped took 653 ms (did NOT wait for settling yet))
17-03-18 04:22:06.194 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:22:06.194 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 04:22:06.244 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:06.254 -07 000000424 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:22:06.254 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:22:06.254 -07 000000611 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:06.254 -07 000000611 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:22:06.254 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.836 mm, average velocity = 2.212 mm/sec
17-03-18 04:22:06.634 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.975845,
17-03-18 04:22:06.664 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:06.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:07.204 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:07.204 -07 000000591 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:22:07.214 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:07.214 -07 000000611 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:07.244 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:07.244 -07 000000611 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:07.244 -07 000000611 INF: Y Motor: Moved to 64.8784 after 2058 ms (table move)
17-03-18 04:22:07.244 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176182 mm (DAC = 38487)
17-03-18 04:22:07.244 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.254 -07 000000608 INF: FPGA: Recv ZSGSRD 36712
17-03-18 04:22:07.254 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:22:07.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.254 -07 000000611 INF: FPGA: Recv ZSGSRD 36718
17-03-18 04:22:07.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.264 -07 000000444 INF: FPGA: Recv ZSGSRD 36715
17-03-18 04:22:07.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.274 -07 000000611 INF: FPGA: Recv ZSGSRD 36713
17-03-18 04:22:07.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.284 -07 000000479 INF: FPGA: Recv ZSGSRD 36711
17-03-18 04:22:07.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.294 -07 000000424 INF: FPGA: Recv ZSGSRD 36718
17-03-18 04:22:07.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.304 -07 000000444 INF: FPGA: Recv ZSGSRD 36712
17-03-18 04:22:07.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.314 -07 000000608 INF: FPGA: Recv ZSGSRD 36718
17-03-18 04:22:07.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.324 -07 000000591 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:22:07.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:07.334 -07 000000424 INF: FPGA: Recv ZSGSRD 36713
17-03-18 04:22:07.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.344 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:07.344 -07 000000012 INF: FPGA: Recv ZPIEZORD 32850
17-03-18 04:22:07.354 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:07.354 -07 000000467 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.6 V.
17-03-18 04:22:07.354 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36716 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36714 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36711 (-175.3 uncal um), Max = 36725 (-175.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:22:07.354 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36716, posNoise = 9, negNoise = 5
17-03-18 04:22:07.354 -07 000000467 INF: Z Motor: After move to -0.176182, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:07.354 -07 000000467 INF: Z Motor: Settle wait time = 2061 ms, measure time = 103 ms (allowed 150 ms), total time = 2164 ms
17-03-18 04:22:07.354 -07 000000467 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:07.404 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2446 ms
17-03-18 04:22:07.404 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:07.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:07.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:07.404 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:07.404 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:07.404 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:07.404 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:07.414 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:22:07.414 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:07.414 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:07.414 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:07.424 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:07.424 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:22:07.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:07.464 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:07.764 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:07.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:07.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:07.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:22:07.804 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:07.804 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:07.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:22:07.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 04:22:07.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:07.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:07.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:22:07.904 -07 000000479 INF: Autofocus start
17-03-18 04:22:07.904 -07 000000479 INF: MeasureProfile start
17-03-18 04:22:07.904 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:07.904 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:07.914 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:07.914 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:07.914 -07 000000479 INF: MeasureProfile done
17-03-18 04:22:07.914 -07 000000479 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:22:07.914 -07 000000479 INF: Autofocus finished
17-03-18 04:22:08.114 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:08.114 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:08.114 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.17619472500803. ----------
17-03-18 04:22:08.114 -07 000000610 INF: Cycle	124	Tile	7	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:08.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37037, sync = True, waitForSettling = True)
17-03-18 04:22:08.124 -07 000000610 INF: Z Motor: Moving to -0.169545 mm, started at -0.176195 mm, distance = 6.65 um
17-03-18 04:22:08.124 -07 000000610 INF: FPGA: Xmit ZDACW 37037\n [Z Motor]
17-03-18 04:22:08.124 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:22:08.134 -07 000000610 INF: FPGA: 'ZDACW 37037' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:08.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:08.134 -07 000000611 INF: FPGA: Recv ZDACR 37037
17-03-18 04:22:08.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.294 -07 000000479 INF: FPGA: Recv ZSGSRD 35687
17-03-18 04:22:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.304 -07 000000012 INF: FPGA: Recv ZSGSRD 35682
17-03-18 04:22:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.314 -07 000000444 INF: FPGA: Recv ZSGSRD 35680
17-03-18 04:22:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.324 -07 000000444 INF: FPGA: Recv ZSGSRD 35683
17-03-18 04:22:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:08.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.334 -07 000000444 INF: FPGA: Recv ZSGSRD 35690
17-03-18 04:22:08.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.344 -07 000000479 INF: FPGA: Recv ZSGSRD 35686
17-03-18 04:22:08.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.354 -07 000000444 INF: FPGA: Recv ZSGSRD 35674
17-03-18 04:22:08.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.364 -07 000000012 INF: FPGA: Recv ZSGSRD 35680
17-03-18 04:22:08.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.394 -07 000000608 INF: FPGA: Recv ZSGSRD 35679
17-03-18 04:22:08.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:22:08.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:08.404 -07 000000444 INF: FPGA: Recv ZSGSRD 35682
17-03-18 04:22:08.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:08.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:08.434 -07 000000444 INF: FPGA: Recv ZPIEZORD 31473
17-03-18 04:22:08.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:22:08.444 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.3 V.
17-03-18 04:22:08.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35682 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35690 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:22:08.444 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35682, posNoise = 8, negNoise = 8
17-03-18 04:22:08.444 -07 000000610 INF: Z Motor: After move to -0.169545, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:08.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-18 04:22:08.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:08.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:08.444 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:08.444 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:08.444 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:08.444 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:08.444 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:08.444 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:08.444 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:22:08.444 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:08.444 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:08.454 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:08.454 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:08.454 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:08.454 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:08.454 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:08.464 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:22:08.464 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:22:08.464 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:22:08.464 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:22:08.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37214 150\n [Camera]
17-03-18 04:22:08.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:09.084 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:09.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:09.094 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:09.094 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:09.094 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:22:09.094 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:09.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:09.094 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:09.214 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:09.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) start.
17-03-18 04:22:09.284 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37214 804
17-03-18 04:22:09.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:09.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:22:09.484 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:22:09.484 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:09.484 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:09.484 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:22:09.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:22:09.604 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:22:09.604 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:09.614 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:09.614 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 04:22:09.634 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:09.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:09.634 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:09.634 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:09.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:09.634 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:09.644 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:09.644 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:22:09.644 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:09.644 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:22:09.824 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:09.824 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:09.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37214 150' command took 2 ms to send, 1345 ms to get response, and 1355 ms overall
17-03-18 04:22:09.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:09.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169552089653449. ------
17-03-18 04:22:09.834 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:09.834 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17610 mm
17-03-18 04:22:09.834 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:09.834 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:09.834 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:22:09.834 -07 000000467 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:22:09.844 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:09.844 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:09.854 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:10.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:22:10.034 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:22:10.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:10.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:10.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:22:10.034 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:22:10.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:10.044 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:10.044 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:22:10.044 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:22:10.054 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38469, sync = True, waitForSettling = False)
17-03-18 04:22:10.054 -07 000000444 INF: Z Motor: Moving to -0.176100 mm, started at -0.169552 mm, distance = -6.55 um
17-03-18 04:22:10.054 -07 000000444 INF: FPGA: Xmit ZDACW 38469\n [Z Motor]
17-03-18 04:22:10.054 -07 000000591 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:22:10.054 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:10.054 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 205 ms to get response, and 219 ms overall
17-03-18 04:22:10.054 -07 000000467 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:10.054 -07 000000467 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:10.054 -07 000000467 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:22:10.054 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:22:10.054 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 215 ms overall
17-03-18 04:22:10.064 -07 000000444 INF: FPGA: 'ZDACW 38469' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:10.064 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:10.074 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:10.074 -07 000000591 INF: FPGA: Recv ZDACR 38469
17-03-18 04:22:10.084 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:22:10.084 -07 000000444 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 04:22:10.434 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:22:10.434 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-18 04:22:10.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:10.484 -07 000000444 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:22:10.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:10.494 -07 000000467 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:10.494 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:22:10.494 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-18 04:22:11.444 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:11.444 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:22:11.454 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:11.454 -07 000000467 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:11.484 -07 000000467 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:11.484 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:11.484 -07 000000467 INF: Y Motor: Moved to 65.7134 after 1652 ms (table move)
17-03-18 04:22:11.494 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176100 mm (DAC = 38469)
17-03-18 04:22:11.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.494 -07 000000012 INF: FPGA: Recv ZSGSRD 36693
17-03-18 04:22:11.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:11.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.504 -07 000000444 INF: FPGA: Recv ZSGSRD 36701
17-03-18 04:22:11.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.514 -07 000000424 INF: FPGA: Recv ZSGSRD 36710
17-03-18 04:22:11.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.524 -07 000000467 INF: FPGA: Recv ZSGSRD 36699
17-03-18 04:22:11.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.534 -07 000000424 INF: FPGA: Recv ZSGSRD 36700
17-03-18 04:22:11.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.544 -07 000000591 INF: FPGA: Recv ZSGSRD 36700
17-03-18 04:22:11.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.554 -07 000000467 INF: FPGA: Recv ZSGSRD 36700
17-03-18 04:22:11.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.564 -07 000000444 INF: FPGA: Recv ZSGSRD 36705
17-03-18 04:22:11.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36702
17-03-18 04:22:11.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:11.584 -07 000000467 INF: FPGA: Recv ZSGSRD 36711
17-03-18 04:22:11.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.594 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:11.594 -07 000000424 INF: FPGA: Recv ZPIEZORD 32833
17-03-18 04:22:11.604 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:11.604 -07 000000608 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.6 V.
17-03-18 04:22:11.604 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36702 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36700 (-175.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36693 (-175.2 uncal um), Max = 36711 (-175.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:22:11.604 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36702, posNoise = 9, negNoise = 9
17-03-18 04:22:11.604 -07 000000608 INF: Z Motor: After move to -0.176100, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:11.604 -07 000000608 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-18 04:22:11.604 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:11.654 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1817 ms
17-03-18 04:22:11.654 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:11.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:11.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:11.654 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:11.654 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:11.654 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:11.654 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:11.654 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:11.654 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:11.654 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:11.664 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:11.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:11.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:11.664 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:22:11.664 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:22:11.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:11.724 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:11.994 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.981281,
17-03-18 04:22:12.024 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:12.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:12.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:12.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:22:12.064 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:12.064 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:12.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 394 ms overall
17-03-18 04:22:12.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:22:12.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:12.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:12.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:22:12.164 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:12.164 -07 000000424 INF: Autofocus start
17-03-18 04:22:12.164 -07 000000424 INF: MeasureProfile start
17-03-18 04:22:12.164 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:12.174 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:12.174 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:12.174 -07 000000424 INF: MeasureProfile done
17-03-18 04:22:12.174 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:22:12.174 -07 000000424 INF: Autofocus finished
17-03-18 04:22:12.374 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:12.374 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:12.374 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176104786038046. ----------
17-03-18 04:22:12.374 -07 000000610 INF: Cycle	124	Tile	8	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:12.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36966, sync = True, waitForSettling = True)
17-03-18 04:22:12.384 -07 000000610 INF: Z Motor: Moving to -0.169220 mm, started at -0.176105 mm, distance = 6.89 um
17-03-18 04:22:12.384 -07 000000610 INF: FPGA: Xmit ZDACW 36966\n [Z Motor]
17-03-18 04:22:12.384 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:22:12.394 -07 000000610 INF: FPGA: 'ZDACW 36966' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:12.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:12.394 -07 000000591 INF: FPGA: Recv ZDACR 36966
17-03-18 04:22:12.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:12.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.554 -07 000000591 INF: FPGA: Recv ZSGSRD 35632
17-03-18 04:22:12.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:12.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.564 -07 000000591 INF: FPGA: Recv ZSGSRD 35631
17-03-18 04:22:12.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.574 -07 000000591 INF: FPGA: Recv ZSGSRD 35633
17-03-18 04:22:12.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.584 -07 000000591 INF: FPGA: Recv ZSGSRD 35631
17-03-18 04:22:12.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.594 -07 000000591 INF: FPGA: Recv ZSGSRD 35631
17-03-18 04:22:12.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.604 -07 000000479 INF: FPGA: Recv ZSGSRD 35630
17-03-18 04:22:12.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35635
17-03-18 04:22:12.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.624 -07 000000611 INF: FPGA: Recv ZSGSRD 35628
17-03-18 04:22:12.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.634 -07 000000611 INF: FPGA: Recv ZSGSRD 35629
17-03-18 04:22:12.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:12.644 -07 000000444 INF: FPGA: Recv ZSGSRD 35631
17-03-18 04:22:12.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:12.654 -07 000000444 INF: FPGA: Recv ZPIEZORD 31387
17-03-18 04:22:12.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:12.664 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.4 V.
17-03-18 04:22:12.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35631 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35631 (-168.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35628 (-168.3 uncal um), Max = 35635 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:22:12.664 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35631, posNoise = 4, negNoise = 3
17-03-18 04:22:12.664 -07 000000610 INF: Z Motor: After move to -0.169220, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:12.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:12.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:12.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:12.664 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:12.664 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:12.664 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:12.664 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:12.664 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:12.664 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:12.664 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:12.664 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:12.664 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:12.664 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:12.664 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:12.674 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:12.674 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:12.674 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:12.684 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:22:12.684 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:22:12.684 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:22:12.684 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:22:12.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37143 150\n [Camera]
17-03-18 04:22:12.884 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:13.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:13.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:13.314 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:13.314 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:13.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:13.314 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:13.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:13.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:22:13.434 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:13.434 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) start.
17-03-18 04:22:13.504 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37143 804
17-03-18 04:22:13.654 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:13.814 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:22:13.814 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:22:13.814 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:13.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:22:13.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:22:13.814 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:13.814 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:13.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:13.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 04:22:13.824 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 04:22:13.854 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:13.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:13.854 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:13.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:13.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:13.854 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:13.864 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:13.864 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:22:13.864 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:13.864 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:22:14.044 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:22:14.044 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:14.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37143 150' command took 2 ms to send, 1344 ms to get response, and 1354 ms overall
17-03-18 04:22:14.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:14.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.16922445483422. ------
17-03-18 04:22:14.054 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:14.054 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17574 mm
17-03-18 04:22:14.054 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:14.054 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:14.054 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:22:14.054 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:22:14.064 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:14.064 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:14.074 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:14.264 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:22:14.264 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:22:14.264 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:14.264 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:22:14.264 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:22:14.264 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:14.264 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:14.264 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:22:14.264 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:14.274 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:22:14.274 -07 000000591 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:22:14.274 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:14.274 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 207 ms to get response, and 222 ms overall
17-03-18 04:22:14.274 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 216 ms overall
17-03-18 04:22:14.274 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:14.274 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:14.274 -07 000000424 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:22:14.274 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38389, sync = True, waitForSettling = False)
17-03-18 04:22:14.274 -07 000000444 INF: Z Motor: Moving to -0.175734 mm, started at -0.169224 mm, distance = -6.51 um
17-03-18 04:22:14.274 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:14.284 -07 000000444 INF: FPGA: Xmit ZDACW 38389\n [Z Motor]
17-03-18 04:22:14.284 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:22:14.294 -07 000000444 INF: FPGA: 'ZDACW 38389' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:22:14.294 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:14.294 -07 000000479 INF: FPGA: Recv ZDACR 38389
17-03-18 04:22:14.304 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:14.304 -07 000000444 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 04:22:14.654 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 04:22:14.654 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-18 04:22:14.704 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:14.704 -07 000000611 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:22:14.714 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:14.714 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:14.714 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:22:14.714 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 04:22:15.664 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:15.664 -07 000000611 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:22:15.674 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:15.674 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:15.704 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:15.704 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:15.704 -07 000000424 INF: Y Motor: Moved to 66.5386 after 1647 ms (table move)
17-03-18 04:22:15.704 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175734 mm (DAC = 38389)
17-03-18 04:22:15.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.704 -07 000000012 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:22:15.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:15.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.714 -07 000000608 INF: FPGA: Recv ZSGSRD 36631
17-03-18 04:22:15.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.724 -07 000000467 INF: FPGA: Recv ZSGSRD 36650
17-03-18 04:22:15.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.734 -07 000000424 INF: FPGA: Recv ZSGSRD 36650
17-03-18 04:22:15.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.744 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.744 -07 000000012 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:22:15.754 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.754 -07 000000424 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:22:15.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.764 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.764 -07 000000467 INF: FPGA: Recv ZSGSRD 36649
17-03-18 04:22:15.774 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.774 -07 000000608 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:22:15.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.784 -07 000000012 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:22:15.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:15.794 -07 000000424 INF: FPGA: Recv ZSGSRD 36639
17-03-18 04:22:15.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.804 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:15.804 -07 000000467 INF: FPGA: Recv ZPIEZORD 32737
17-03-18 04:22:15.814 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:15.814 -07 000000561 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.6 V.
17-03-18 04:22:15.814 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36645 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36645 (-174.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36631 (-174.8 uncal um), Max = 36651 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 04:22:15.814 -07 000000561 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36645, posNoise = 6, negNoise = 14
17-03-18 04:22:15.814 -07 000000561 INF: Z Motor: After move to -0.175734, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:15.814 -07 000000561 INF: Z Motor: Settle wait time = 1427 ms, measure time = 104 ms (allowed 150 ms), total time = 1531 ms
17-03-18 04:22:15.814 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:15.864 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1809 ms
17-03-18 04:22:15.864 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:15.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:15.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:15.864 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:15.864 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:15.864 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:15.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:15.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:22:15.864 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:15.874 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:15.874 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:15.874 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:15.874 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:22:15.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:15.924 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:16.224 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:16.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:16.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:16.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-18 04:22:16.264 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:16.264 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:16.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:22:16.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:22:16.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:16.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:16.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:22:16.364 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:16.364 -07 000000444 INF: Autofocus start
17-03-18 04:22:16.364 -07 000000444 INF: MeasureProfile start
17-03-18 04:22:16.364 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:16.374 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:16.374 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:16.374 -07 000000444 INF: MeasureProfile done
17-03-18 04:22:16.374 -07 000000444 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:22:16.374 -07 000000444 INF: Autofocus finished
17-03-18 04:22:16.574 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:16.574 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:22:16.574 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175738605945965. ----------
17-03-18 04:22:16.574 -07 000000610 INF: Cycle	124	Tile	9	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:16.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36869, sync = True, waitForSettling = True)
17-03-18 04:22:16.584 -07 000000610 INF: Z Motor: Moving to -0.168775 mm, started at -0.175739 mm, distance = 6.96 um
17-03-18 04:22:16.584 -07 000000610 INF: FPGA: Xmit ZDACW 36869\n [Z Motor]
17-03-18 04:22:16.584 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:22:16.594 -07 000000610 INF: FPGA: 'ZDACW 36869' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:16.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:16.594 -07 000000479 INF: FPGA: Recv ZDACR 36869
17-03-18 04:22:16.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:16.664 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:16.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.754 -07 000000424 INF: FPGA: Recv ZSGSRD 35558
17-03-18 04:22:16.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.764 -07 000000626 INF: FPGA: Recv ZSGSRD 35561
17-03-18 04:22:16.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.774 -07 000000424 INF: FPGA: Recv ZSGSRD 35563
17-03-18 04:22:16.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.784 -07 000000012 INF: FPGA: Recv ZSGSRD 35562
17-03-18 04:22:16.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.794 -07 000000626 INF: FPGA: Recv ZSGSRD 35561
17-03-18 04:22:16.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.804 -07 000000012 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:22:16.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35562
17-03-18 04:22:16.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.824 -07 000000585 INF: FPGA: Recv ZSGSRD 35561
17-03-18 04:22:16.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.834 -07 000000626 INF: FPGA: Recv ZSGSRD 35559
17-03-18 04:22:16.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:16.844 -07 000000424 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:22:16.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:16.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:16.854 -07 000000438 INF: FPGA: Recv ZPIEZORD 31262
17-03-18 04:22:16.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:16.864 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.5 V.
17-03-18 04:22:16.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35562 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35562 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35558 (-167.9 uncal um), Max = 35565 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:22:16.864 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35562, posNoise = 3, negNoise = 4
17-03-18 04:22:16.864 -07 000000610 INF: Z Motor: After move to -0.168775, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:16.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:16.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:16.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:16.864 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:16.864 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:16.864 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:16.864 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:16.864 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:16.864 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:16.864 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:22:16.864 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:16.864 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:22:16.864 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:16.864 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:16.864 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:16.874 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:22:16.874 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:16.884 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:22:16.884 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:22:16.884 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:22:16.884 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:22:16.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37046 150\n [Camera]
17-03-18 04:22:17.084 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:17.354 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.014009,
17-03-18 04:22:17.504 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:17.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:17.504 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:17.504 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:17.504 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:22:17.504 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:17.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:17.514 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:17.514 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:17.514 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:22:17.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37046 804
17-03-18 04:22:17.844 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:17.894 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:22:17.894 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:22:17.894 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:17.894 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:22:17.894 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:22:17.894 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:17.894 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:22:17.894 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:22:17.894 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:22:17.904 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:22:18.054 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:18.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:18.054 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:18.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:18.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:18.164 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:18.164 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:22:18.164 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:18.174 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:18.174 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) start.
17-03-18 04:22:18.244 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1349
17-03-18 04:22:18.244 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:18.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37046 150' command took 4 ms to send, 1343 ms to get response, and 1356 ms overall
17-03-18 04:22:18.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:18.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168781184196438. ------
17-03-18 04:22:18.244 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:18.244 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17564 mm
17-03-18 04:22:18.244 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:18.254 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:22:18.254 -07 000000479 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 04:22:18.254 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:18.564 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:22:18.574 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:22:18.574 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:18.574 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:22:18.574 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:22:18.574 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:18.574 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:18.574 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 04:22:18.574 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:18.584 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:22:18.584 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38369, sync = True, waitForSettling = False)
17-03-18 04:22:18.584 -07 000000561 INF: Z Motor: Moving to -0.175642 mm, started at -0.168781 mm, distance = -6.86 um
17-03-18 04:22:18.584 -07 000000561 INF: FPGA: Xmit ZDACW 38369\n [Z Motor]
17-03-18 04:22:18.594 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:18.594 -07 000000012 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:22:18.594 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:22:18.594 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 336 ms to get response, and 345 ms overall
17-03-18 04:22:18.594 -07 000000561 INF: FPGA: 'ZDACW 38369' command took 0 ms to send, 6 ms to get response, and 7 ms overall
17-03-18 04:22:18.594 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:18.594 -07 000000479 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:18.594 -07 000000479 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:18.594 -07 000000479 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:22:18.594 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 346 ms to get response, and 348 ms overall
17-03-18 04:22:18.604 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:18.604 -07 000000012 INF: FPGA: Recv ZDACR 38369
17-03-18 04:22:18.604 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 04:22:18.604 -07 000000561 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 04:22:18.614 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:18.814 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:18.814 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 221 ms overall
17-03-18 04:22:18.974 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:22:18.974 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 04:22:19.024 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:19.024 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:22:19.034 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:19.034 -07 000000479 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:19.034 -07 000000479 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:22:19.034 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.215 mm/sec
17-03-18 04:22:19.984 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:19.984 -07 000000561 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:22:19.994 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:19.994 -07 000000479 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:20.024 -07 000000479 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:20.024 -07 000000479 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:20.024 -07 000000479 INF: Y Motor: Moved to 67.3716 after 1769 ms (table move)
17-03-18 04:22:20.024 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175642 mm (DAC = 38369)
17-03-18 04:22:20.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.024 -07 000000591 INF: FPGA: Recv ZSGSRD 36628
17-03-18 04:22:20.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:20.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.034 -07 000000012 INF: FPGA: Recv ZSGSRD 36630
17-03-18 04:22:20.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.044 -07 000000444 INF: FPGA: Recv ZSGSRD 36638
17-03-18 04:22:20.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.054 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.054 -07 000000561 INF: FPGA: Recv ZSGSRD 36634
17-03-18 04:22:20.064 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.064 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.064 -07 000000585 INF: FPGA: Recv ZSGSRD 36627
17-03-18 04:22:20.074 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.074 -07 000000561 INF: FPGA: Recv ZSGSRD 36635
17-03-18 04:22:20.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.084 -07 000000585 INF: FPGA: Recv ZSGSRD 36625
17-03-18 04:22:20.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.094 -07 000000585 INF: FPGA: Recv ZSGSRD 36633
17-03-18 04:22:20.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.104 -07 000000585 INF: FPGA: Recv ZSGSRD 36633
17-03-18 04:22:20.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:20.114 -07 000000591 INF: FPGA: Recv ZSGSRD 36630
17-03-18 04:22:20.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.124 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:20.124 -07 000000591 INF: FPGA: Recv ZPIEZORD 32719
17-03-18 04:22:20.134 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.134 -07 000000424 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.7 V.
17-03-18 04:22:20.134 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36631 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36632 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36625 (-174.7 uncal um), Max = 36638 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:22:20.134 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36631, posNoise = 7, negNoise = 6
17-03-18 04:22:20.134 -07 000000424 INF: Z Motor: After move to -0.175642, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:20.134 -07 000000424 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-18 04:22:20.134 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:20.184 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1931 ms
17-03-18 04:22:20.184 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:20.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:20.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:20.184 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:20.184 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:20.184 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:20.184 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:20.184 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:20.194 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:20.194 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:20.194 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:20.204 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:20.204 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:22:20.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:20.244 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:20.544 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:20.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:20.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:20.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:22:20.584 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:20.584 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:20.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:22:20.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 04:22:20.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:20.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:20.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 04:22:20.684 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:20.684 -07 000000479 INF: Autofocus start
17-03-18 04:22:20.684 -07 000000479 INF: MeasureProfile start
17-03-18 04:22:20.684 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:20.694 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:20.694 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:20.694 -07 000000479 INF: MeasureProfile done
17-03-18 04:22:20.694 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:22:20.694 -07 000000479 INF: Autofocus finished
17-03-18 04:22:20.894 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:20.894 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:20.894 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175648666975981. ----------
17-03-18 04:22:20.894 -07 000000610 INF: Cycle	124	Tile	10	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:20.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36883, sync = True, waitForSettling = True)
17-03-18 04:22:20.904 -07 000000610 INF: Z Motor: Moving to -0.168840 mm, started at -0.175649 mm, distance = 6.81 um
17-03-18 04:22:20.904 -07 000000610 INF: FPGA: Xmit ZDACW 36883\n [Z Motor]
17-03-18 04:22:20.904 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:22:20.914 -07 000000610 INF: FPGA: 'ZDACW 36883' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:20.914 -07 000000585 INF: FPGA: Recv ZDACR 36883
17-03-18 04:22:20.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:20.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:21.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.074 -07 000000585 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:22:21.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.084 -07 000000585 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:22:21.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.094 -07 000000585 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:22:21.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.104 -07 000000585 INF: FPGA: Recv ZSGSRD 35570
17-03-18 04:22:21.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.114 -07 000000611 INF: FPGA: Recv ZSGSRD 35572
17-03-18 04:22:21.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:22:21.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.134 -07 000000012 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:22:21.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.144 -07 000000012 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:22:21.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.154 -07 000000012 INF: FPGA: Recv ZSGSRD 35570
17-03-18 04:22:21.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:21.164 -07 000000012 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:22:21.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:21.174 -07 000000012 INF: FPGA: Recv ZPIEZORD 31308
17-03-18 04:22:21.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:21.184 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.4 V.
17-03-18 04:22:21.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35574 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35570 (-168.0 uncal um), Max = 35577 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:22:21.184 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35574, posNoise = 3, negNoise = 4
17-03-18 04:22:21.184 -07 000000610 INF: Z Motor: After move to -0.168840, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:21.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:22:21.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:21.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:21.184 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:21.184 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:21.184 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:21.184 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:21.184 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:21.184 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:21.184 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:21.184 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:21.184 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:21.184 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:21.194 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:21.194 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:21.194 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:22:21.194 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:21.204 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:22:21.204 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:22:21.204 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:22:21.204 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:22:21.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37060 150\n [Camera]
17-03-18 04:22:21.404 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:22:21.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:21.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:21.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:21.824 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:21.824 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:21.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:21.824 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:21.824 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:21.824 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:22:21.824 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:21.824 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:22:22.014 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37060 804
17-03-18 04:22:22.164 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:22.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:22:22.224 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:22:22.224 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:22.224 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:22.224 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:22:22.224 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:22:22.224 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:22:22.224 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:22.234 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:22.234 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:22:22.364 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:22.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:22.364 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:22.474 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:22.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:22.474 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:22.484 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:22.484 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 04:22:22.484 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:22.484 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) start.
17-03-18 04:22:22.554 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:22:22.554 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:22.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37060 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-18 04:22:22.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:22.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168858274742139. ------
17-03-18 04:22:22.564 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:22.564 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17509 mm
17-03-18 04:22:22.564 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:22.564 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:22:22.564 -07 000000438 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 04:22:22.564 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38249, sync = True, waitForSettling = False)
17-03-18 04:22:22.564 -07 000000585 INF: Z Motor: Moving to -0.175093 mm, started at -0.168858 mm, distance = -6.23 um
17-03-18 04:22:22.574 -07 000000585 INF: FPGA: Xmit ZDACW 38249\n [Z Motor]
17-03-18 04:22:22.584 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:22.884 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:22:22.884 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:22:22.884 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:22.884 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:22:22.884 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:22:22.884 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:22.884 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:22.884 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:22.884 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 04:22:22.894 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:22:22.894 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:22.894 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:22:22.894 -07 000000479 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:22:22.894 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 309 ms to get response, and 331 ms overall
17-03-18 04:22:22.894 -07 000000438 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:22.894 -07 000000438 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:22.904 -07 000000438 INF: Y Motor: Moving 1346 steps-23
17-03-18 04:22:22.904 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 329 ms to get response, and 334 ms overall
17-03-18 04:22:22.904 -07 000000585 INF: FPGA: 'ZDACW 38249' command took 0 ms to send, 319 ms to get response, and 331 ms overall
17-03-18 04:22:22.904 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:22.904 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.030322,
17-03-18 04:22:22.924 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:22.934 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:22.934 -07 000000611 INF: FPGA: Recv ZDACR 38249
17-03-18 04:22:22.944 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:22:22.944 -07 000000585 INF: Z Motor: MoveAbsStepped took 372 ms (did NOT wait for settling yet))
17-03-18 04:22:23.124 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:23.124 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:22:23.274 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 04:22:23.274 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 04:22:23.324 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:23.334 -07 000000611 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:22:23.334 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:23.334 -07 000000438 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:23.334 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:22:23.334 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.225 mm/sec
17-03-18 04:22:24.284 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:24.284 -07 000000611 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:22:24.294 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:24.294 -07 000000438 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:24.314 -07 000000438 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:24.324 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:24.324 -07 000000438 INF: Y Motor: Moved to 68.2046 after 1753 ms (table move)
17-03-18 04:22:24.324 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175093 mm (DAC = 38249)
17-03-18 04:22:24.334 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.334 -07 000000585 INF: FPGA: Recv ZSGSRD 36545
17-03-18 04:22:24.344 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:24.344 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.344 -07 000000438 INF: FPGA: Recv ZSGSRD 36553
17-03-18 04:22:24.354 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.354 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.354 -07 000000561 INF: FPGA: Recv ZSGSRD 36541
17-03-18 04:22:24.364 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.364 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.364 -07 000000438 INF: FPGA: Recv ZSGSRD 36545
17-03-18 04:22:24.374 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.374 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.374 -07 000000608 INF: FPGA: Recv ZSGSRD 36541
17-03-18 04:22:24.384 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.384 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.384 -07 000000585 INF: FPGA: Recv ZSGSRD 36543
17-03-18 04:22:24.394 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.394 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.394 -07 000000561 INF: FPGA: Recv ZSGSRD 36547
17-03-18 04:22:24.404 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.404 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.404 -07 000000474 INF: FPGA: Recv ZSGSRD 36550
17-03-18 04:22:24.414 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.414 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.414 -07 000000561 INF: FPGA: Recv ZSGSRD 36554
17-03-18 04:22:24.424 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.424 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:24.424 -07 000000474 INF: FPGA: Recv ZSGSRD 36547
17-03-18 04:22:24.434 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.434 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:24.434 -07 000000467 INF: FPGA: Recv ZPIEZORD 32609
17-03-18 04:22:24.444 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:24.444 -07 000000444 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.7 V.
17-03-18 04:22:24.444 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36547 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36546 (-174.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36541 (-174.2 uncal um), Max = 36554 (-174.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:22:24.444 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36547, posNoise = 7, negNoise = 6
17-03-18 04:22:24.444 -07 000000444 INF: Z Motor: After move to -0.175093, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:24.444 -07 000000444 INF: Z Motor: Settle wait time = 1765 ms, measure time = 107 ms (allowed 150 ms), total time = 1872 ms
17-03-18 04:22:24.444 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:24.494 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1925 ms
17-03-18 04:22:24.494 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:24.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:24.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:24.494 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:24.494 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:24.494 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:24.494 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:24.494 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:24.494 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:24.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:24.504 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:24.504 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:22:24.504 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:22:24.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:24.574 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:24.874 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:24.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:24.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:24.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:22:24.914 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:24.914 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:24.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 403 ms overall
17-03-18 04:22:24.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:22:24.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:24.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:22:24.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:22:25.014 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:25.014 -07 000000444 INF: Autofocus start
17-03-18 04:22:25.014 -07 000000444 INF: MeasureProfile start
17-03-18 04:22:25.024 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:25.024 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:25.024 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:25.034 -07 000000444 INF: MeasureProfile done
17-03-18 04:22:25.034 -07 000000444 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:22:25.034 -07 000000444 INF: Autofocus finished
17-03-18 04:22:25.224 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:25.224 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:22:25.224 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175109033156073. ----------
17-03-18 04:22:25.224 -07 000000610 INF: Cycle	124	Tile	11	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:25.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36782, sync = True, waitForSettling = True)
17-03-18 04:22:25.234 -07 000000610 INF: Z Motor: Moving to -0.168377 mm, started at -0.175109 mm, distance = 6.73 um
17-03-18 04:22:25.234 -07 000000610 INF: FPGA: Xmit ZDACW 36782\n [Z Motor]
17-03-18 04:22:25.234 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:22:25.244 -07 000000610 INF: FPGA: 'ZDACW 36782' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:25.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:25.244 -07 000000444 INF: FPGA: Recv ZDACR 36782
17-03-18 04:22:25.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:25.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.404 -07 000000585 INF: FPGA: Recv ZSGSRD 35503
17-03-18 04:22:25.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:25.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.414 -07 000000608 INF: FPGA: Recv ZSGSRD 35507
17-03-18 04:22:25.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.424 -07 000000585 INF: FPGA: Recv ZSGSRD 35500
17-03-18 04:22:25.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35501
17-03-18 04:22:25.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35498
17-03-18 04:22:25.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.454 -07 000000611 INF: FPGA: Recv ZSGSRD 35507
17-03-18 04:22:25.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.464 -07 000000467 INF: FPGA: Recv ZSGSRD 35506
17-03-18 04:22:25.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.474 -07 000000608 INF: FPGA: Recv ZSGSRD 35497
17-03-18 04:22:25.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.484 -07 000000608 INF: FPGA: Recv ZSGSRD 35502
17-03-18 04:22:25.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:25.494 -07 000000611 INF: FPGA: Recv ZSGSRD 35501
17-03-18 04:22:25.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:25.504 -07 000000611 INF: FPGA: Recv ZPIEZORD 31208
17-03-18 04:22:25.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:25.514 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.5 V.
17-03-18 04:22:25.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35502 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35502 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35497 (-167.5 uncal um), Max = 35507 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:22:25.514 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35502, posNoise = 5, negNoise = 5
17-03-18 04:22:25.514 -07 000000610 INF: Z Motor: After move to -0.168377, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:25.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:22:25.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:25.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:25.514 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:25.514 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:25.514 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:25.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:25.514 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:25.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:25.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:25.524 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:25.524 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:25.524 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:25.524 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:22:25.524 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:25.524 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:22:25.524 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:25.534 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:22:25.534 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:22:25.534 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:22:25.534 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:22:25.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36958 150\n [Camera]
17-03-18 04:22:25.734 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:26.154 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:26.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:26.154 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:26.164 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:26.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:26.164 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:26.164 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:26.164 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:22:26.164 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:26.164 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:22:26.354 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36958 804
17-03-18 04:22:26.504 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:26.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:22:26.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:22:26.554 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:26.554 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:26.554 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:22:26.554 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:22:26.554 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:22:26.554 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:26.564 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:26.564 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:22:26.664 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:26.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:26.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:26.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:26.704 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:26.704 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:26.704 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:22:26.704 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:26.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:26.704 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:26.704 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:26.704 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:22:26.894 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:22:26.894 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:26.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36958 150' command took 2 ms to send, 1353 ms to get response, and 1357 ms overall
17-03-18 04:22:26.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:26.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168395731467932. ------
17-03-18 04:22:26.894 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:26.894 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17497 mm
17-03-18 04:22:26.894 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:26.904 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:22:26.904 -07 000000591 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 04:22:26.904 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38223, sync = True, waitForSettling = False)
17-03-18 04:22:26.904 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:26.904 -07 000000467 INF: Z Motor: Moving to -0.174974 mm, started at -0.168396 mm, distance = -6.58 um
17-03-18 04:22:26.904 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:26.904 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 04:22:27.014 -07 000000467 INF: FPGA: Xmit ZDACW 38223\n [Z Motor]
17-03-18 04:22:27.014 -07 000000444 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:22:27.014 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 04:22:27.014 -07 000000591 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:27.024 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:27.024 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:22:27.024 -07 000000467 INF: FPGA: 'ZDACW 38223' command took 0 ms to send, 1 ms to get response, and 120 ms overall
17-03-18 04:22:27.024 -07 000000591 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:27.024 -07 000000591 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:22:27.034 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:27.034 -07 000000561 INF: FPGA: Recv ZDACR 38223
17-03-18 04:22:27.044 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:22:27.044 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:27.044 -07 000000467 INF: Z Motor: MoveAbsStepped took 138 ms (did NOT wait for settling yet))
17-03-18 04:22:27.104 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:22:27.104 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:22:27.104 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:27.104 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:22:27.104 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:22:27.104 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:27.104 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:27.104 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:27.104 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:22:27.114 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:22:27.224 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:27.224 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 319 ms overall
17-03-18 04:22:27.414 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:22:27.414 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-18 04:22:27.464 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:27.474 -07 000000611 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:22:27.474 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:22:27.474 -07 000000591 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:27.474 -07 000000591 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:22:27.474 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-18 04:22:28.284 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.037119,
17-03-18 04:22:28.424 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:28.424 -07 000000479 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:22:28.434 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:28.434 -07 000000591 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:28.464 -07 000000591 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:28.464 -07 000000591 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:22:28.464 -07 000000591 INF: Y Motor: Moved to 69.0269 after 1559 ms (table move)
17-03-18 04:22:28.464 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174974 mm (DAC = 38223)
17-03-18 04:22:28.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.464 -07 000000467 INF: FPGA: Recv ZSGSRD 36530
17-03-18 04:22:28.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:28.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.474 -07 000000444 INF: FPGA: Recv ZSGSRD 36524
17-03-18 04:22:28.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.484 -07 000000591 INF: FPGA: Recv ZSGSRD 36528
17-03-18 04:22:28.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.494 -07 000000611 INF: FPGA: Recv ZSGSRD 36526
17-03-18 04:22:28.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.504 -07 000000585 INF: FPGA: Recv ZSGSRD 36521
17-03-18 04:22:28.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.514 -07 000000479 INF: FPGA: Recv ZSGSRD 36528
17-03-18 04:22:28.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.524 -07 000000591 INF: FPGA: Recv ZSGSRD 36522
17-03-18 04:22:28.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.534 -07 000000611 INF: FPGA: Recv ZSGSRD 36535
17-03-18 04:22:28.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.544 -07 000000591 INF: FPGA: Recv ZSGSRD 36524
17-03-18 04:22:28.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:28.554 -07 000000561 INF: FPGA: Recv ZSGSRD 36529
17-03-18 04:22:28.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.564 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:28.564 -07 000000591 INF: FPGA: Recv ZPIEZORD 32589
17-03-18 04:22:28.574 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:28.574 -07 000000608 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.7 V.
17-03-18 04:22:28.574 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36527 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36527 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36521 (-174.1 uncal um), Max = 36535 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:22:28.574 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36527, posNoise = 8, negNoise = 6
17-03-18 04:22:28.574 -07 000000608 INF: Z Motor: After move to -0.174974, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:28.574 -07 000000608 INF: Z Motor: Settle wait time = 1563 ms, measure time = 106 ms (allowed 150 ms), total time = 1669 ms
17-03-18 04:22:28.574 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:28.624 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-18 04:22:28.624 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:28.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:28.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:28.624 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:28.624 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:28.624 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:28.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:28.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:28.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:28.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:28.634 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:28.634 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:28.634 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:22:28.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:28.684 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:28.984 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:28.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:28.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:28.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:22:29.024 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:29.024 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:29.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:22:29.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:22:29.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:29.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:29.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:22:29.124 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:29.124 -07 000000561 INF: Autofocus start
17-03-18 04:22:29.124 -07 000000561 INF: MeasureProfile start
17-03-18 04:22:29.124 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:29.134 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:29.134 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:29.144 -07 000000561 INF: MeasureProfile done
17-03-18 04:22:29.144 -07 000000561 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:22:29.144 -07 000000561 INF: Autofocus finished
17-03-18 04:22:29.334 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:29.334 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:29.334 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.174980548913237. ----------
17-03-18 04:22:29.334 -07 000000610 INF: Cycle	124	Tile	12	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:29.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36773, sync = True, waitForSettling = True)
17-03-18 04:22:29.344 -07 000000610 INF: Z Motor: Moving to -0.168336 mm, started at -0.174981 mm, distance = 6.64 um
17-03-18 04:22:29.344 -07 000000610 INF: FPGA: Xmit ZDACW 36773\n [Z Motor]
17-03-18 04:22:29.344 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:22:29.354 -07 000000610 INF: FPGA: 'ZDACW 36773' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:29.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:29.354 -07 000000444 INF: FPGA: Recv ZDACR 36773
17-03-18 04:22:29.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:29.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35495
17-03-18 04:22:29.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:29.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.524 -07 000000608 INF: FPGA: Recv ZSGSRD 35493
17-03-18 04:22:29.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.544 -07 000000467 INF: FPGA: Recv ZSGSRD 35494
17-03-18 04:22:29.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:22:29.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.554 -07 000000424 INF: FPGA: Recv ZSGSRD 35493
17-03-18 04:22:29.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35496
17-03-18 04:22:29.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.574 -07 000000479 INF: FPGA: Recv ZSGSRD 35497
17-03-18 04:22:29.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.584 -07 000000467 INF: FPGA: Recv ZSGSRD 35496
17-03-18 04:22:29.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.594 -07 000000479 INF: FPGA: Recv ZSGSRD 35496
17-03-18 04:22:29.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35490
17-03-18 04:22:29.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:29.614 -07 000000608 INF: FPGA: Recv ZSGSRD 35495
17-03-18 04:22:29.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:29.624 -07 000000585 INF: FPGA: Recv ZPIEZORD 31200
17-03-18 04:22:29.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:29.634 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.5 V.
17-03-18 04:22:29.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35494 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35495 (-167.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35490 (-167.4 uncal um), Max = 35497 (-167.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:22:29.634 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35494, posNoise = 3, negNoise = 4
17-03-18 04:22:29.634 -07 000000610 INF: Z Motor: After move to -0.168336, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:29.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:22:29.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:29.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:29.634 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:29.634 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:29.634 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:29.634 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:29.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:29.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:29.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:29.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:29.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:29.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:29.644 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:29.644 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:29.644 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:22:29.644 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:29.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:22:29.654 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:22:29.654 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:22:29.654 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:22:29.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36950 150\n [Camera]
17-03-18 04:22:29.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:30.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:30.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:30.274 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:30.274 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:30.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:30.274 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:30.274 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:30.284 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:22:30.284 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:30.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:22:30.464 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36950 804
17-03-18 04:22:30.614 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:30.664 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:22:30.664 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:22:30.664 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:30.664 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:22:30.664 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:22:30.664 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:30.674 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:30.674 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:22:30.674 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:30.674 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:22:30.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:30.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:30.814 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:30.824 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:30.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:30.824 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:30.824 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:30.824 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:22:30.824 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:30.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:22:31.004 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:31.004 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:31.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36950 150' command took 2 ms to send, 1349 ms to get response, and 1354 ms overall
17-03-18 04:22:31.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:31.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168344337770798. ------
17-03-18 04:22:31.014 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:31.014 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17478 mm
17-03-18 04:22:31.014 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:31.014 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:31.014 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38180, sync = True, waitForSettling = False)
17-03-18 04:22:31.014 -07 000000591 INF: Z Motor: Moving to -0.174777 mm, started at -0.168344 mm, distance = -6.43 um
17-03-18 04:22:31.014 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:22:31.014 -07 000000444 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 04:22:31.024 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:31.024 -07 000000591 INF: FPGA: Xmit ZDACW 38180\n [Z Motor]
17-03-18 04:22:31.024 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:22:31.034 -07 000000591 INF: FPGA: 'ZDACW 38180' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:22:31.034 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:31.044 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:31.044 -07 000000474 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:22:31.054 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:22:31.054 -07 000000444 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:31.054 -07 000000444 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:31.054 -07 000000444 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:22:31.054 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:31.054 -07 000000438 INF: FPGA: Recv ZDACR 38180
17-03-18 04:22:31.064 -07 000000591 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:22:31.064 -07 000000591 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:22:31.064 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:31.204 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:22:31.204 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:22:31.204 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:31.214 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:31.214 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:22:31.214 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:22:31.214 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:31.214 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:22:31.214 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:22:31.214 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:22:31.234 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:31.234 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:22:31.434 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:22:31.434 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:22:31.484 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:31.494 -07 000000424 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:22:31.494 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:22:31.494 -07 000000444 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:31.494 -07 000000444 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:22:31.494 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec
17-03-18 04:22:31.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:31.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:32.444 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:32.444 -07 000000591 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:22:32.454 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:32.454 -07 000000444 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:32.484 -07 000000444 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:32.484 -07 000000444 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:22:32.484 -07 000000444 INF: Y Motor: Moved to 69.8628 after 1461 ms (table move)
17-03-18 04:22:32.484 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174777 mm (DAC = 38180)
17-03-18 04:22:32.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.484 -07 000000012 INF: FPGA: Recv ZSGSRD 36499
17-03-18 04:22:32.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:32.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.494 -07 000000474 INF: FPGA: Recv ZSGSRD 36502
17-03-18 04:22:32.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.504 -07 000000479 INF: FPGA: Recv ZSGSRD 36488
17-03-18 04:22:32.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.514 -07 000000438 INF: FPGA: Recv ZSGSRD 36496
17-03-18 04:22:32.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.524 -07 000000012 INF: FPGA: Recv ZSGSRD 36501
17-03-18 04:22:32.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.534 -07 000000474 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:22:32.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.544 -07 000000012 INF: FPGA: Recv ZSGSRD 36494
17-03-18 04:22:32.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.554 -07 000000438 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:22:32.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.564 -07 000000444 INF: FPGA: Recv ZSGSRD 36498
17-03-18 04:22:32.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:32.574 -07 000000591 INF: FPGA: Recv ZSGSRD 36506
17-03-18 04:22:32.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.584 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:32.584 -07 000000479 INF: FPGA: Recv ZPIEZORD 32560
17-03-18 04:22:32.594 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:32.594 -07 000000467 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.826 V. Piezo Error = -8.7 V.
17-03-18 04:22:32.594 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36497 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36497 (-173.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36488 (-173.8 uncal um), Max = 36506 (-174.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:22:32.594 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36497, posNoise = 9, negNoise = 9
17-03-18 04:22:32.594 -07 000000467 INF: Z Motor: After move to -0.174777, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:32.594 -07 000000467 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:22:32.594 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:32.644 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:22:32.644 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:32.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:32.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:32.644 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:32.644 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:32.644 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:32.644 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:32.644 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:32.644 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:32.654 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:32.654 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:32.664 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:22:32.664 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:22:32.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:32.714 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:33.014 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:33.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:33.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:33.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) start.
17-03-18 04:22:33.054 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:33.054 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:33.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:22:33.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:22:33.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:33.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:22:33.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:22:33.154 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:33.154 -07 000000438 INF: Autofocus start
17-03-18 04:22:33.154 -07 000000438 INF: MeasureProfile start
17-03-18 04:22:33.154 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:33.164 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:33.164 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:33.164 -07 000000438 INF: MeasureProfile done
17-03-18 04:22:33.164 -07 000000438 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 04:22:33.164 -07 000000438 INF: Autofocus finished
17-03-18 04:22:33.364 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:33.364 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:33.364 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174787822548985. ----------
17-03-18 04:22:33.364 -07 000000610 INF: Cycle	124	Tile	13	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:33.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36567, sync = True, waitForSettling = True)
17-03-18 04:22:33.374 -07 000000610 INF: Z Motor: Moving to -0.167393 mm, started at -0.174788 mm, distance = 7.39 um
17-03-18 04:22:33.374 -07 000000610 INF: FPGA: Xmit ZDACW 36567\n [Z Motor]
17-03-18 04:22:33.374 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:22:33.384 -07 000000610 INF: FPGA: 'ZDACW 36567' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:33.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:33.384 -07 000000467 INF: FPGA: Recv ZDACR 36567
17-03-18 04:22:33.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:33.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.544 -07 000000438 INF: FPGA: Recv ZSGSRD 35344
17-03-18 04:22:33.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.554 -07 000000479 INF: FPGA: Recv ZSGSRD 35348
17-03-18 04:22:33.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.564 -07 000000444 INF: FPGA: Recv ZSGSRD 35346
17-03-18 04:22:33.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.574 -07 000000467 INF: FPGA: Recv ZSGSRD 35347
17-03-18 04:22:33.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.584 -07 000000012 INF: FPGA: Recv ZSGSRD 35347
17-03-18 04:22:33.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.594 -07 000000467 INF: FPGA: Recv ZSGSRD 35348
17-03-18 04:22:33.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.604 -07 000000012 INF: FPGA: Recv ZSGSRD 35341
17-03-18 04:22:33.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.614 -07 000000467 INF: FPGA: Recv ZSGSRD 35346
17-03-18 04:22:33.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.624 -07 000000012 INF: FPGA: Recv ZSGSRD 35351
17-03-18 04:22:33.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:33.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:33.644 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.009895,
17-03-18 04:22:33.644 -07 000000438 INF: FPGA: Recv ZSGSRD 35343
17-03-18 04:22:33.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:22:33.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:33.664 -07 000000438 INF: FPGA: Recv ZPIEZORD 31045
17-03-18 04:22:33.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:22:33.674 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.5 V.
17-03-18 04:22:33.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35346 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35346 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35341 (-166.5 uncal um), Max = 35351 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:22:33.674 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35346, posNoise = 5, negNoise = 5
17-03-18 04:22:33.674 -07 000000610 INF: Z Motor: After move to -0.167393, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:33.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 04:22:33.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:33.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:33.674 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:33.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:33.674 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:33.674 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:33.674 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:33.674 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:33.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:33.674 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:33.674 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:33.674 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:33.684 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:22:33.684 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:33.684 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:33.684 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:33.694 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:22:33.694 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:22:33.694 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:22:33.694 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:22:33.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36744 150\n [Camera]
17-03-18 04:22:33.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:34.314 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:34.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:34.324 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:34.324 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:34.324 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:22:34.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:34.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:34.324 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:34.324 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:34.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:22:34.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36744 804
17-03-18 04:22:34.664 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:34.694 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:22:34.694 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:22:34.694 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:34.694 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:34.694 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:22:34.694 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:22:34.694 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:34.704 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:34.704 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:22:34.704 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:22:34.864 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:34.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:34.864 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:34.864 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:34.864 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:22:34.864 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:34.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:34.864 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:34.864 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:34.864 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:22:35.054 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:35.054 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:35.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36744 150' command took 2 ms to send, 1345 ms to get response, and 1360 ms overall
17-03-18 04:22:35.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:35.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167393554373818. ------
17-03-18 04:22:35.054 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:35.174 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:35.174 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17386 mm
17-03-18 04:22:35.174 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:35.184 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 118 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 04:22:35.184 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:35.184 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:22:35.184 -07 000000438 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:22:35.184 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37980, sync = True, waitForSettling = False)
17-03-18 04:22:35.184 -07 000000461 INF: Z Motor: Moving to -0.173861 mm, started at -0.167394 mm, distance = -6.47 um
17-03-18 04:22:35.194 -07 000000461 INF: FPGA: Xmit ZDACW 37980\n [Z Motor]
17-03-18 04:22:35.194 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:22:35.204 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:35.204 -07 000000461 INF: FPGA: 'ZDACW 37980' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:22:35.204 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:22:35.214 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:22:35.214 -07 000000438 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:35.214 -07 000000438 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:35.214 -07 000000438 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:22:35.224 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:35.224 -07 000000611 INF: FPGA: Recv ZDACR 37980
17-03-18 04:22:35.234 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:22:35.234 -07 000000461 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:22:35.234 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:35.254 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:22:35.254 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:22:35.254 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:35.254 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:22:35.254 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:22:35.254 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:35.264 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:35.264 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:22:35.264 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:22:35.274 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:22:35.384 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:35.384 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:22:35.604 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 04:22:35.604 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:22:35.654 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:35.654 -07 000000444 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:22:35.664 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:35.664 -07 000000438 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:35.664 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:22:35.664 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:22:36.614 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:36.614 -07 000000444 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:22:36.624 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:36.624 -07 000000438 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:36.654 -07 000000438 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:36.654 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:22:36.654 -07 000000438 INF: Y Motor: Moved to 70.6880 after 1469 ms (table move)
17-03-18 04:22:36.654 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173861 mm (DAC = 37980)
17-03-18 04:22:36.654 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.654 -07 000000608 INF: FPGA: Recv ZSGSRD 36362
17-03-18 04:22:36.664 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:36.664 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.664 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:36.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:36.664 -07 000000561 INF: FPGA: Recv ZSGSRD 36351
17-03-18 04:22:36.674 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.674 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.674 -07 000000447 INF: FPGA: Recv ZSGSRD 36358
17-03-18 04:22:36.684 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.684 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.684 -07 000000438 INF: FPGA: Recv ZSGSRD 36354
17-03-18 04:22:36.694 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.694 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.694 -07 000000474 INF: FPGA: Recv ZSGSRD 36351
17-03-18 04:22:36.704 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.704 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.704 -07 000000585 INF: FPGA: Recv ZSGSRD 36348
17-03-18 04:22:36.714 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.714 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.714 -07 000000501 INF: FPGA: Recv ZSGSRD 36347
17-03-18 04:22:36.724 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.724 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.724 -07 000000608 INF: FPGA: Recv ZSGSRD 36355
17-03-18 04:22:36.734 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.734 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.734 -07 000000438 INF: FPGA: Recv ZSGSRD 36357
17-03-18 04:22:36.744 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.744 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:36.744 -07 000000467 INF: FPGA: Recv ZSGSRD 36354
17-03-18 04:22:36.754 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.754 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:36.754 -07 000000585 INF: FPGA: Recv ZPIEZORD 32411
17-03-18 04:22:36.764 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:36.764 -07 000000012 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.7 V.
17-03-18 04:22:36.764 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36354 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36354 (-173.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36347 (-172.9 uncal um), Max = 36362 (-173.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:22:36.764 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36354, posNoise = 8, negNoise = 7
17-03-18 04:22:36.764 -07 000000012 INF: Z Motor: After move to -0.173861, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:36.764 -07 000000012 INF: Z Motor: Settle wait time = 1471 ms, measure time = 106 ms (allowed 150 ms), total time = 1577 ms
17-03-18 04:22:36.764 -07 000000012 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:36.814 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 04:22:36.814 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:36.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:36.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:36.814 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:36.814 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:36.814 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:36.814 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:36.824 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:36.824 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:36.824 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:36.824 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:36.824 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:36.824 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:22:36.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:36.874 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:37.174 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:37.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:37.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:37.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:22:37.214 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:37.214 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:37.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:22:37.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:22:37.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:37.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:37.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:22:37.314 -07 000000625 INF: Autofocus start
17-03-18 04:22:37.314 -07 000000625 INF: MeasureProfile start
17-03-18 04:22:37.314 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:37.314 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:37.324 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:37.324 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:37.324 -07 000000625 INF: MeasureProfile done
17-03-18 04:22:37.324 -07 000000625 INF: X=-32  Z correction [um]=-0.2344
17-03-18 04:22:37.324 -07 000000625 INF: Autofocus finished
17-03-18 04:22:37.524 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:37.524 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:37.524 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173869160212713. ----------
17-03-18 04:22:37.524 -07 000000610 INF: Cycle	124	Tile	14	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:37.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36441, sync = True, waitForSettling = True)
17-03-18 04:22:37.534 -07 000000610 INF: Z Motor: Moving to -0.166816 mm, started at -0.173869 mm, distance = 7.05 um
17-03-18 04:22:37.534 -07 000000610 INF: FPGA: Xmit ZDACW 36441\n [Z Motor]
17-03-18 04:22:37.534 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:22:37.544 -07 000000610 INF: FPGA: 'ZDACW 36441' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:37.544 -07 000000479 INF: FPGA: Recv ZDACR 36441
17-03-18 04:22:37.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:37.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.704 -07 000000561 INF: FPGA: Recv ZSGSRD 35248
17-03-18 04:22:37.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:37.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.714 -07 000000501 INF: FPGA: Recv ZSGSRD 35256
17-03-18 04:22:37.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.724 -07 000000479 INF: FPGA: Recv ZSGSRD 35255
17-03-18 04:22:37.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.734 -07 000000561 INF: FPGA: Recv ZSGSRD 35255
17-03-18 04:22:37.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.744 -07 000000479 INF: FPGA: Recv ZSGSRD 35258
17-03-18 04:22:37.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.754 -07 000000501 INF: FPGA: Recv ZSGSRD 35262
17-03-18 04:22:37.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.764 -07 000000561 INF: FPGA: Recv ZSGSRD 35258
17-03-18 04:22:37.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.774 -07 000000501 INF: FPGA: Recv ZSGSRD 35258
17-03-18 04:22:37.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.784 -07 000000625 INF: FPGA: Recv ZSGSRD 35256
17-03-18 04:22:37.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:37.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35263
17-03-18 04:22:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:37.804 -07 000000479 INF: FPGA: Recv ZPIEZORD 30915
17-03-18 04:22:37.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:37.814 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.6 V.
17-03-18 04:22:37.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35257 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35257 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35248 (-165.9 uncal um), Max = 35263 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:22:37.814 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35257, posNoise = 6, negNoise = 9
17-03-18 04:22:37.814 -07 000000610 INF: Z Motor: After move to -0.166816, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:37.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:22:37.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:37.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:37.814 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:37.814 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:37.814 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:37.814 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:37.814 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:37.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:37.814 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:37.814 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:37.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:37.814 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:37.814 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:37.824 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:37.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:37.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:37.834 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:22:37.834 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:22:37.834 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:22:37.834 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:22:37.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36618 150\n [Camera]
17-03-18 04:22:38.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:38.464 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:38.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:38.464 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:38.464 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:38.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:38.464 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:38.464 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:38.464 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:22:38.464 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:38.464 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:22:38.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36618 804
17-03-18 04:22:38.804 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:38.854 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:22:38.854 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:22:38.854 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:38.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:22:38.854 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:22:38.854 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:38.854 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:38.854 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:22:38.864 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:38.864 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:22:39.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:39.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:39.004 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:39.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:39.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:39.014 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:39.014 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:39.014 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:22:39.014 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:39.014 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:22:39.024 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.974486,
17-03-18 04:22:39.194 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:39.194 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:39.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36618 150' command took 2 ms to send, 1346 ms to get response, and 1357 ms overall
17-03-18 04:22:39.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:39.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166821799493201. ------
17-03-18 04:22:39.324 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17350 mm
17-03-18 04:22:39.324 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:39.324 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:39.324 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:22:39.324 -07 000000479 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:22:39.324 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37900, sync = True, waitForSettling = False)
17-03-18 04:22:39.324 -07 000000626 INF: Z Motor: Moving to -0.173495 mm, started at -0.166822 mm, distance = -6.67 um
17-03-18 04:22:39.324 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:39.334 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:39.334 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:39.334 -07 000000561 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:22:39.344 -07 000000626 INF: FPGA: Xmit ZDACW 37900\n [Z Motor]
17-03-18 04:22:39.344 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:22:39.344 -07 000000479 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:39.344 -07 000000479 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:39.344 -07 000000479 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:22:39.344 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:22:39.354 -07 000000626 INF: FPGA: 'ZDACW 37900' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:22:39.354 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:39.364 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:39.374 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:39.374 -07 000000467 INF: FPGA: Recv ZDACR 37900
17-03-18 04:22:39.384 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:22:39.384 -07 000000626 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:22:39.404 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:22:39.404 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:22:39.404 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:39.404 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:22:39.404 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:22:39.404 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:39.414 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:39.414 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:39.414 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:22:39.414 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:22:39.554 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:39.554 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:22:39.734 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:22:39.734 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:22:39.784 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:39.784 -07 000000501 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:22:39.794 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:39.794 -07 000000479 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:39.794 -07 000000479 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:22:39.794 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:22:40.744 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:40.744 -07 000000461 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:22:40.754 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:40.754 -07 000000479 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:40.784 -07 000000479 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:40.784 -07 000000479 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:40.784 -07 000000479 INF: Y Motor: Moved to 71.5181 after 1454 ms (table move)
17-03-18 04:22:40.784 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173495 mm (DAC = 37900)
17-03-18 04:22:40.784 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.784 -07 000000479 INF: FPGA: Recv ZSGSRD 36304
17-03-18 04:22:40.794 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:40.794 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.794 -07 000000625 INF: FPGA: Recv ZSGSRD 36292
17-03-18 04:22:40.804 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.804 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.804 -07 000000591 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:22:40.814 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.814 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.814 -07 000000625 INF: FPGA: Recv ZSGSRD 36307
17-03-18 04:22:40.824 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.824 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.824 -07 000000474 INF: FPGA: Recv ZSGSRD 36298
17-03-18 04:22:40.834 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.834 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.834 -07 000000625 INF: FPGA: Recv ZSGSRD 36295
17-03-18 04:22:40.844 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.844 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.844 -07 000000625 INF: FPGA: Recv ZSGSRD 36297
17-03-18 04:22:40.854 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.854 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.854 -07 000000438 INF: FPGA: Recv ZSGSRD 36292
17-03-18 04:22:40.864 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.864 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.864 -07 000000438 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:22:40.874 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.874 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:40.874 -07 000000438 INF: FPGA: Recv ZSGSRD 36290
17-03-18 04:22:40.884 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.884 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:40.884 -07 000000561 INF: FPGA: Recv ZPIEZORD 32354
17-03-18 04:22:40.894 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:40.894 -07 000000487 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.7 V.
17-03-18 04:22:40.894 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36298 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36298 (-172.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36290 (-172.6 uncal um), Max = 36307 (-172.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:22:40.894 -07 000000487 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36298, posNoise = 9, negNoise = 8
17-03-18 04:22:40.894 -07 000000487 INF: Z Motor: After move to -0.173495, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:40.894 -07 000000487 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:22:40.894 -07 000000487 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:40.944 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:22:40.944 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:40.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:40.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:40.944 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:40.944 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:40.944 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:40.944 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:40.944 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:40.944 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:40.944 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:40.944 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:40.964 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:22:40.964 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:22:40.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:41.014 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:41.314 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:41.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:41.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:41.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:22:41.354 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:41.354 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:41.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:22:41.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 04:22:41.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:41.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:41.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:22:41.454 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:41.454 -07 000000467 INF: Autofocus start
17-03-18 04:22:41.454 -07 000000467 INF: MeasureProfile start
17-03-18 04:22:41.454 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:41.464 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:41.464 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:41.464 -07 000000467 INF: MeasureProfile done
17-03-18 04:22:41.474 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:22:41.474 -07 000000467 INF: Autofocus finished
17-03-18 04:22:41.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:41.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:41.664 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:41.664 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:22:41.664 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173509404332774. ----------
17-03-18 04:22:41.664 -07 000000610 INF: Cycle	124	Tile	15	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:41.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36433, sync = True, waitForSettling = True)
17-03-18 04:22:41.674 -07 000000610 INF: Z Motor: Moving to -0.166780 mm, started at -0.173509 mm, distance = 6.73 um
17-03-18 04:22:41.674 -07 000000610 INF: FPGA: Xmit ZDACW 36433\n [Z Motor]
17-03-18 04:22:41.674 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:22:41.684 -07 000000610 INF: FPGA: 'ZDACW 36433' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:41.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:41.684 -07 000000501 INF: FPGA: Recv ZDACR 36433
17-03-18 04:22:41.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:41.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.844 -07 000000474 INF: FPGA: Recv ZSGSRD 35255
17-03-18 04:22:41.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.854 -07 000000626 INF: FPGA: Recv ZSGSRD 35252
17-03-18 04:22:41.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35251
17-03-18 04:22:41.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35247
17-03-18 04:22:41.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.884 -07 000000479 INF: FPGA: Recv ZSGSRD 35256
17-03-18 04:22:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.894 -07 000000625 INF: FPGA: Recv ZSGSRD 35252
17-03-18 04:22:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.904 -07 000000479 INF: FPGA: Recv ZSGSRD 35252
17-03-18 04:22:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.914 -07 000000461 INF: FPGA: Recv ZSGSRD 35251
17-03-18 04:22:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.924 -07 000000626 INF: FPGA: Recv ZSGSRD 35251
17-03-18 04:22:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:41.934 -07 000000625 INF: FPGA: Recv ZSGSRD 35252
17-03-18 04:22:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:41.944 -07 000000479 INF: FPGA: Recv ZPIEZORD 30943
17-03-18 04:22:41.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:41.954 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.5 V.
17-03-18 04:22:41.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35252 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35252 (-165.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35247 (-165.9 uncal um), Max = 35256 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:22:41.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35252, posNoise = 4, negNoise = 5
17-03-18 04:22:41.954 -07 000000610 INF: Z Motor: After move to -0.166780, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:41.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:41.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:41.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:41.954 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:41.954 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:41.954 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:41.954 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:41.954 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:41.954 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:41.954 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:41.954 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:41.954 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:41.954 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:41.964 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:41.964 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:41.964 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:41.964 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:41.974 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:22:41.974 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:22:41.974 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:22:41.974 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:22:41.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36610 150\n [Camera]
17-03-18 04:22:42.174 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:42.594 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:42.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:42.594 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:42.594 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:42.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:42.594 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:42.604 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:42.604 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:22:42.604 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:42.604 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:22:42.784 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36610 804
17-03-18 04:22:42.934 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:42.974 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:22:42.974 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:22:42.974 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:42.974 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:22:42.984 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:22:42.984 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:42.984 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:42.984 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:22:42.984 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:42.994 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:22:43.134 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:43.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:43.144 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:43.144 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:43.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:22:43.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:43.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:43.144 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:43.144 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:43.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:22:43.324 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:43.334 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:43.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36610 150' command took 2 ms to send, 1350 ms to get response, and 1354 ms overall
17-03-18 04:22:43.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:43.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.166789678432492. ------
17-03-18 04:22:43.334 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:43.334 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17321 mm
17-03-18 04:22:43.334 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:43.334 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:22:43.334 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37837, sync = True, waitForSettling = False)
17-03-18 04:22:43.334 -07 000000626 INF: Z Motor: Moving to -0.173207 mm, started at -0.166790 mm, distance = -6.42 um
17-03-18 04:22:43.334 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 04:22:43.344 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:43.344 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:43.344 -07 000000626 INF: FPGA: Xmit ZDACW 37837\n [Z Motor]
17-03-18 04:22:43.344 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:22:43.354 -07 000000626 INF: FPGA: 'ZDACW 37837' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:43.354 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:43.354 -07 000000474 INF: FPGA: Recv ZDACR 37837
17-03-18 04:22:43.364 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:43.364 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:43.364 -07 000000626 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 04:22:43.364 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:22:43.374 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:22:43.374 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:43.374 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:43.374 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:43.374 -07 000000561 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:22:43.384 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:43.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:22:43.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:22:43.544 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:43.544 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:22:43.544 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:22:43.544 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:43.554 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:43.554 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:22:43.554 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:22:43.554 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:22:43.574 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:43.574 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 04:22:43.754 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:22:43.754 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 04:22:43.804 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:43.814 -07 000000626 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:22:43.814 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:43.814 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:43.814 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:22:43.814 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.845 mm, average velocity = 2.217 mm/sec
17-03-18 04:22:44.384 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.989471,
17-03-18 04:22:44.764 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:44.764 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:22:44.774 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:44.774 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:44.804 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:44.804 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:44.804 -07 000000561 INF: Y Motor: Moved to 72.3491 after 1462 ms (table move)
17-03-18 04:22:44.804 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173207 mm (DAC = 37837)
17-03-18 04:22:44.804 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.804 -07 000000561 INF: FPGA: Recv ZSGSRD 36255
17-03-18 04:22:44.814 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:44.814 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.814 -07 000000487 INF: FPGA: Recv ZSGSRD 36256
17-03-18 04:22:44.824 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.824 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.824 -07 000000561 INF: FPGA: Recv ZSGSRD 36255
17-03-18 04:22:44.834 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.834 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.834 -07 000000591 INF: FPGA: Recv ZSGSRD 36253
17-03-18 04:22:44.844 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:44.844 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.844 -07 000000591 INF: FPGA: Recv ZSGSRD 36252
17-03-18 04:22:44.854 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.854 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.854 -07 000000591 INF: FPGA: Recv ZSGSRD 36250
17-03-18 04:22:44.864 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.864 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.864 -07 000000591 INF: FPGA: Recv ZSGSRD 36253
17-03-18 04:22:44.874 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.874 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.874 -07 000000591 INF: FPGA: Recv ZSGSRD 36244
17-03-18 04:22:44.884 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.884 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.884 -07 000000591 INF: FPGA: Recv ZSGSRD 36253
17-03-18 04:22:44.894 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.894 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:44.894 -07 000000591 INF: FPGA: Recv ZSGSRD 36255
17-03-18 04:22:44.904 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.904 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:44.904 -07 000000591 INF: FPGA: Recv ZPIEZORD 32276
17-03-18 04:22:44.914 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:44.914 -07 000000479 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.8 V.
17-03-18 04:22:44.914 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36253 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36253 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36244 (-172.3 uncal um), Max = 36256 (-172.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:22:44.914 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36253, posNoise = 3, negNoise = 9
17-03-18 04:22:44.914 -07 000000479 INF: Z Motor: After move to -0.173207, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:44.914 -07 000000479 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:22:44.914 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:44.964 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:22:44.964 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:44.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:44.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:44.964 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:44.964 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:44.964 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:44.964 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:44.964 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:22:44.964 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:44.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:44.974 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:44.974 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:44.974 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:22:44.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:45.024 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:45.324 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:45.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:45.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:45.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 04:22:45.364 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:45.364 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:45.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:22:45.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:22:45.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:45.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:22:45.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:22:45.464 -07 000000625 INF: Autofocus start
17-03-18 04:22:45.464 -07 000000625 INF: MeasureProfile start
17-03-18 04:22:45.464 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:45.464 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:45.474 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:45.474 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:45.474 -07 000000625 INF: MeasureProfile done
17-03-18 04:22:45.474 -07 000000625 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:22:45.474 -07 000000625 INF: Autofocus finished
17-03-18 04:22:45.674 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:45.674 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:45.674 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173220314786395. ----------
17-03-18 04:22:45.684 -07 000000610 INF: Cycle	124	Tile	16	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:45.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36370, sync = True, waitForSettling = True)
17-03-18 04:22:45.684 -07 000000610 INF: Z Motor: Moving to -0.166491 mm, started at -0.173220 mm, distance = 6.73 um
17-03-18 04:22:45.684 -07 000000610 INF: FPGA: Xmit ZDACW 36370\n [Z Motor]
17-03-18 04:22:45.684 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:22:45.694 -07 000000610 INF: FPGA: 'ZDACW 36370' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:45.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:45.694 -07 000000561 INF: FPGA: Recv ZDACR 36370
17-03-18 04:22:45.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:45.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.854 -07 000000444 INF: FPGA: Recv ZSGSRD 35206
17-03-18 04:22:45.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:45.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.864 -07 000000591 INF: FPGA: Recv ZSGSRD 35213
17-03-18 04:22:45.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.874 -07 000000444 INF: FPGA: Recv ZSGSRD 35199
17-03-18 04:22:45.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.884 -07 000000591 INF: FPGA: Recv ZSGSRD 35208
17-03-18 04:22:45.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.894 -07 000000444 INF: FPGA: Recv ZSGSRD 35207
17-03-18 04:22:45.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.904 -07 000000626 INF: FPGA: Recv ZSGSRD 35207
17-03-18 04:22:45.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.914 -07 000000444 INF: FPGA: Recv ZSGSRD 35209
17-03-18 04:22:45.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.924 -07 000000591 INF: FPGA: Recv ZSGSRD 35199
17-03-18 04:22:45.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.934 -07 000000467 INF: FPGA: Recv ZSGSRD 35211
17-03-18 04:22:45.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:45.944 -07 000000438 INF: FPGA: Recv ZSGSRD 35210
17-03-18 04:22:45.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:45.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:45.964 -07 000000467 INF: FPGA: Recv ZPIEZORD 30919
17-03-18 04:22:45.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:22:45.974 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.4 V.
17-03-18 04:22:45.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35207 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35199 (-165.6 uncal um), Max = 35213 (-165.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:22:45.974 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35207, posNoise = 6, negNoise = 8
17-03-18 04:22:45.974 -07 000000610 INF: Z Motor: After move to -0.166491, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:45.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 04:22:45.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:45.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:45.974 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:45.974 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:45.974 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:45.974 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:45.974 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:45.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:45.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:22:45.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:45.974 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:45.974 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:45.984 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:45.984 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:45.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:45.984 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:45.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:22:45.994 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:22:45.994 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:22:45.994 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:22:46.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36547 150\n [Camera]
17-03-18 04:22:46.204 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:46.624 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:46.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:46.634 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:46.634 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:46.634 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:22:46.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:46.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:46.634 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:46.634 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:46.634 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:22:46.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:46.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:46.824 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36547 804
17-03-18 04:22:46.974 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:47.014 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:22:47.014 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:22:47.014 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:47.014 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:47.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:22:47.024 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:22:47.024 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:47.024 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:47.024 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:22:47.024 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:22:47.174 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:47.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:47.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:47.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:47.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:22:47.174 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:47.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:47.174 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:47.174 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:47.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:22:47.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:22:47.364 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:47.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36547 150' command took 2 ms to send, 1345 ms to get response, and 1366 ms overall
17-03-18 04:22:47.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:47.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166500588886113. ------
17-03-18 04:22:47.374 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:47.374 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17294 mm
17-03-18 04:22:47.374 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:47.374 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:47.374 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:22:47.374 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:22:47.374 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37778, sync = True, waitForSettling = False)
17-03-18 04:22:47.374 -07 000000487 INF: Z Motor: Moving to -0.172937 mm, started at -0.166501 mm, distance = -6.44 um
17-03-18 04:22:47.494 -07 000000487 INF: FPGA: Xmit ZDACW 37778\n [Z Motor]
17-03-18 04:22:47.494 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 04:22:47.494 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:22:47.504 -07 000000487 INF: FPGA: 'ZDACW 37778' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 04:22:47.504 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:47.504 -07 000000461 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:22:47.514 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 04:22:47.514 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:47.514 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:47.514 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:22:47.514 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:47.524 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:47.524 -07 000000561 INF: FPGA: Recv ZDACR 37778
17-03-18 04:22:47.534 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:47.534 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:22:47.534 -07 000000487 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-18 04:22:47.574 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:22:47.574 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:22:47.574 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:47.574 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:22:47.574 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:22:47.574 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:47.584 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:47.584 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:22:47.584 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:22:47.584 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:22:47.714 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:47.714 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 216 ms overall
17-03-18 04:22:47.904 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:22:47.904 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:22:47.954 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:47.964 -07 000000479 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:22:47.964 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:22:47.964 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:47.964 -07 000000424 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:22:47.964 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-18 04:22:48.914 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:48.914 -07 000000474 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:22:48.924 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:48.924 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:48.944 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:48.954 -07 000000424 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:48.954 -07 000000424 INF: Y Motor: Moved to 73.1753 after 1576 ms (table move)
17-03-18 04:22:48.954 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172937 mm (DAC = 37778)
17-03-18 04:22:48.954 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:48.954 -07 000000444 INF: FPGA: Recv ZSGSRD 36212
17-03-18 04:22:48.964 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:22:48.964 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:48.964 -07 000000424 INF: FPGA: Recv ZSGSRD 36207
17-03-18 04:22:48.974 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:48.974 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:48.974 -07 000000479 INF: FPGA: Recv ZSGSRD 36211
17-03-18 04:22:48.984 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:48.984 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:48.984 -07 000000467 INF: FPGA: Recv ZSGSRD 36215
17-03-18 04:22:48.994 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:48.994 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:48.994 -07 000000012 INF: FPGA: Recv ZSGSRD 36209
17-03-18 04:22:49.004 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.004 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:49.004 -07 000000625 INF: FPGA: Recv ZSGSRD 36213
17-03-18 04:22:49.014 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.014 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:49.014 -07 000000479 INF: FPGA: Recv ZSGSRD 36213
17-03-18 04:22:49.024 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.024 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:49.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36207
17-03-18 04:22:49.034 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.034 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:49.034 -07 000000012 INF: FPGA: Recv ZSGSRD 36208
17-03-18 04:22:49.044 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.044 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:49.044 -07 000000625 INF: FPGA: Recv ZSGSRD 36210
17-03-18 04:22:49.054 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.054 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:49.054 -07 000000591 INF: FPGA: Recv ZPIEZORD 32218
17-03-18 04:22:49.064 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.064 -07 000000438 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.765 V. Piezo Error = -8.8 V.
17-03-18 04:22:49.064 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36210 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36210 (-172.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36207 (-172.0 uncal um), Max = 36215 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:22:49.064 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36210, posNoise = 5, negNoise = 3
17-03-18 04:22:49.064 -07 000000438 INF: Z Motor: After move to -0.172937, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:49.064 -07 000000438 INF: Z Motor: Settle wait time = 1579 ms, measure time = 107 ms (allowed 150 ms), total time = 1686 ms
17-03-18 04:22:49.064 -07 000000438 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:49.114 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 04:22:49.114 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:49.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:49.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:49.114 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:49.114 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:49.114 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:49.114 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:49.114 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:22:49.114 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:49.124 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:49.124 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:49.124 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:49.124 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:22:49.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:49.174 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:49.474 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:49.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:49.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:49.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:22:49.514 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:49.514 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:49.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:22:49.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:22:49.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:49.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:49.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:22:49.614 -07 000000479 INF: Autofocus start
17-03-18 04:22:49.614 -07 000000479 INF: MeasureProfile start
17-03-18 04:22:49.614 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:49.614 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:49.624 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:49.624 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:49.624 -07 000000479 INF: MeasureProfile done
17-03-18 04:22:49.624 -07 000000479 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:22:49.624 -07 000000479 INF: Autofocus finished
17-03-18 04:22:49.744 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.973092,
17-03-18 04:22:49.824 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:49.824 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:49.824 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172944073664299. ----------
17-03-18 04:22:49.824 -07 000000610 INF: Cycle	124	Tile	17	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:49.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36275, sync = True, waitForSettling = True)
17-03-18 04:22:49.834 -07 000000610 INF: Z Motor: Moving to -0.166056 mm, started at -0.172944 mm, distance = 6.89 um
17-03-18 04:22:49.834 -07 000000610 INF: FPGA: Xmit ZDACW 36275\n [Z Motor]
17-03-18 04:22:49.834 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:22:49.844 -07 000000610 INF: FPGA: 'ZDACW 36275' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:49.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:49.844 -07 000000461 INF: FPGA: Recv ZDACR 36275
17-03-18 04:22:49.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:49.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:50.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.004 -07 000000591 INF: FPGA: Recv ZSGSRD 35142
17-03-18 04:22:50.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:50.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.014 -07 000000467 INF: FPGA: Recv ZSGSRD 35142
17-03-18 04:22:50.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.024 -07 000000424 INF: FPGA: Recv ZSGSRD 35140
17-03-18 04:22:50.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.034 -07 000000461 INF: FPGA: Recv ZSGSRD 35142
17-03-18 04:22:50.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.044 -07 000000626 INF: FPGA: Recv ZSGSRD 35138
17-03-18 04:22:50.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.054 -07 000000479 INF: FPGA: Recv ZSGSRD 35142
17-03-18 04:22:50.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.064 -07 000000625 INF: FPGA: Recv ZSGSRD 35134
17-03-18 04:22:50.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.074 -07 000000461 INF: FPGA: Recv ZSGSRD 35140
17-03-18 04:22:50.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.084 -07 000000438 INF: FPGA: Recv ZSGSRD 35140
17-03-18 04:22:50.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:50.094 -07 000000479 INF: FPGA: Recv ZSGSRD 35141
17-03-18 04:22:50.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:50.104 -07 000000424 INF: FPGA: Recv ZPIEZORD 30804
17-03-18 04:22:50.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:50.114 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.5 V.
17-03-18 04:22:50.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35140 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35140 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35134 (-165.2 uncal um), Max = 35142 (-165.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:22:50.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35140, posNoise = 2, negNoise = 6
17-03-18 04:22:50.114 -07 000000610 INF: Z Motor: After move to -0.166056, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:50.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:50.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:50.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:50.114 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:50.114 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:50.114 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:50.114 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:50.114 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:50.114 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:50.114 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:50.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:50.114 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:50.114 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:50.124 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:50.124 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:50.124 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:50.124 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:50.134 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:22:50.134 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:22:50.134 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:22:50.134 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:22:50.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36452 150\n [Camera]
17-03-18 04:22:50.334 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:50.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:50.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:50.754 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:50.754 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 612
17-03-18 04:22:50.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 612
17-03-18 04:22:50.754 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:50.754 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:50.754 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:22:50.764 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:50.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:22:50.944 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36452 804
17-03-18 04:22:51.094 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:51.144 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:22:51.144 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:22:51.144 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:51.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:22:51.144 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:22:51.144 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:51.144 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:22:51.144 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:22:51.144 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:51.154 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:22:51.294 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:51.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:51.294 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:51.294 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:51.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:51.304 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:51.304 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:51.304 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:22:51.304 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:51.304 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:22:51.484 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:51.484 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:51.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36452 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-18 04:22:51.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:51.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166070166672615. ------
17-03-18 04:22:51.494 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:51.494 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17202 mm
17-03-18 04:22:51.494 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:51.614 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:51.614 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 04:22:51.614 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:51.614 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:22:51.614 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 04:22:51.614 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37577, sync = True, waitForSettling = False)
17-03-18 04:22:51.614 -07 000000012 INF: Z Motor: Moving to -0.172016 mm, started at -0.166070 mm, distance = -5.95 um
17-03-18 04:22:51.624 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:51.624 -07 000000591 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:22:51.634 -07 000000012 INF: FPGA: Xmit ZDACW 37577\n [Z Motor]
17-03-18 04:22:51.634 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:22:51.634 -07 000000461 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:51.634 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:22:51.634 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:51.634 -07 000000461 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:22:51.644 -07 000000012 INF: FPGA: 'ZDACW 37577' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:22:51.644 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:51.654 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:51.654 -07 000000591 INF: FPGA: Recv ZDACR 37577
17-03-18 04:22:51.664 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:22:51.664 -07 000000012 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:22:51.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:51.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:51.704 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:22:51.704 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:22:51.704 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:51.704 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:22:51.704 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:22:51.704 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:51.704 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:51.704 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:22:51.704 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:51.714 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:22:51.814 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:51.814 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 04:22:52.014 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:22:52.014 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 04:22:52.054 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:52.054 -07 000000591 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:22:52.064 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:52.064 -07 000000461 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:52.064 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:22:52.064 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.847 mm, average velocity = 2.212 mm/sec
17-03-18 04:22:53.014 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:53.014 -07 000000444 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:22:53.024 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:53.024 -07 000000461 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:53.044 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:53.044 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:22:53.044 -07 000000461 INF: Y Motor: Moved to 74.0078 after 1426 ms (table move)
17-03-18 04:22:53.044 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172016 mm (DAC = 37577)
17-03-18 04:22:53.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.054 -07 000000591 INF: FPGA: Recv ZSGSRD 36071
17-03-18 04:22:53.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:22:53.054 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.054 -07 000000461 INF: FPGA: Recv ZSGSRD 36064
17-03-18 04:22:53.064 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:22:53.064 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.064 -07 000000591 INF: FPGA: Recv ZSGSRD 36065
17-03-18 04:22:53.074 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.074 -07 000000461 INF: FPGA: Recv ZSGSRD 36071
17-03-18 04:22:53.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.084 -07 000000591 INF: FPGA: Recv ZSGSRD 36068
17-03-18 04:22:53.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36074
17-03-18 04:22:53.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.104 -07 000000467 INF: FPGA: Recv ZSGSRD 36070
17-03-18 04:22:53.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.114 -07 000000585 INF: FPGA: Recv ZSGSRD 36062
17-03-18 04:22:53.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.124 -07 000000012 INF: FPGA: Recv ZSGSRD 36063
17-03-18 04:22:53.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:53.134 -07 000000561 INF: FPGA: Recv ZSGSRD 36067
17-03-18 04:22:53.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.144 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:53.144 -07 000000012 INF: FPGA: Recv ZPIEZORD 32081
17-03-18 04:22:53.154 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.154 -07 000000424 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.8 V.
17-03-18 04:22:53.154 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36068 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36062 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:22:53.154 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36068, posNoise = 6, negNoise = 6
17-03-18 04:22:53.154 -07 000000424 INF: Z Motor: After move to -0.172016, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:53.154 -07 000000424 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-18 04:22:53.154 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:53.204 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-18 04:22:53.204 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:53.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:53.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:53.204 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:53.204 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:53.204 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:53.204 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:53.204 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:22:53.204 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:53.214 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:53.214 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:53.214 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:22:53.214 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:22:53.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:53.264 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:53.564 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:53.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:53.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:53.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:22:53.604 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:53.604 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:53.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:22:53.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:22:53.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:53.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:22:53.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:22:53.704 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:53.704 -07 000000467 INF: Autofocus start
17-03-18 04:22:53.704 -07 000000467 INF: MeasureProfile start
17-03-18 04:22:53.714 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:53.714 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:53.714 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:53.714 -07 000000467 INF: MeasureProfile done
17-03-18 04:22:53.714 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:22:53.714 -07 000000467 INF: Autofocus finished
17-03-18 04:22:53.914 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:53.914 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:53.914 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172031835540169. ----------
17-03-18 04:22:53.914 -07 000000610 INF: Cycle	124	Tile	18	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:53.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36074, sync = True, waitForSettling = True)
17-03-18 04:22:53.924 -07 000000610 INF: Z Motor: Moving to -0.165136 mm, started at -0.172032 mm, distance = 6.90 um
17-03-18 04:22:53.924 -07 000000610 INF: FPGA: Xmit ZDACW 36074\n [Z Motor]
17-03-18 04:22:53.924 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:22:53.934 -07 000000610 INF: FPGA: 'ZDACW 36074' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:53.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:53.934 -07 000000438 INF: FPGA: Recv ZDACR 36074
17-03-18 04:22:53.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:53.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:54.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.094 -07 000000487 INF: FPGA: Recv ZSGSRD 35000
17-03-18 04:22:54.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:54.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.104 -07 000000474 INF: FPGA: Recv ZSGSRD 34998
17-03-18 04:22:54.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35001
17-03-18 04:22:54.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.124 -07 000000438 INF: FPGA: Recv ZSGSRD 34995
17-03-18 04:22:54.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.134 -07 000000461 INF: FPGA: Recv ZSGSRD 34997
17-03-18 04:22:54.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.144 -07 000000474 INF: FPGA: Recv ZSGSRD 35002
17-03-18 04:22:54.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.154 -07 000000626 INF: FPGA: Recv ZSGSRD 34990
17-03-18 04:22:54.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.164 -07 000000438 INF: FPGA: Recv ZSGSRD 34995
17-03-18 04:22:54.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.174 -07 000000012 INF: FPGA: Recv ZSGSRD 34995
17-03-18 04:22:54.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:54.184 -07 000000625 INF: FPGA: Recv ZSGSRD 34995
17-03-18 04:22:54.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:54.194 -07 000000585 INF: FPGA: Recv ZPIEZORD 30634
17-03-18 04:22:54.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:54.204 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.505 V. Piezo Error = -9.6 V.
17-03-18 04:22:54.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34997 (-164.3 uncal um), Error = 0.8 uncal um, Median = 34996 (-164.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34990 (-164.2 uncal um), Max = 35002 (-164.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:22:54.204 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34997, posNoise = 5, negNoise = 7
17-03-18 04:22:54.204 -07 000000610 INF: Z Motor: After move to -0.165136, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:54.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:54.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:54.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:54.204 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:54.204 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:54.204 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:54.204 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:54.204 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:54.204 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:54.204 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:54.204 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:54.204 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:54.204 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:54.214 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:22:54.214 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:54.214 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:54.214 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:54.224 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:22:54.224 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:22:54.224 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:22:54.224 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:22:54.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36251 150\n [Camera]
17-03-18 04:22:54.424 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:54.844 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:54.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:54.844 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:54.844 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:54.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:54.844 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:54.844 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:54.844 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:22:54.854 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:54.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:22:55.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36251 804
17-03-18 04:22:55.104 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.005817,
17-03-18 04:22:55.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:55.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:22:55.244 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:22:55.244 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:55.244 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:55.244 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:22:55.244 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:22:55.244 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:22:55.244 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:55.254 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:55.254 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:22:55.384 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:55.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:55.384 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:55.384 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:55.384 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:22:55.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:55.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:55.394 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:55.394 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:55.394 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:22:55.574 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:55.574 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:55.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36251 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-18 04:22:55.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:22:55.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165151504336343. ------
17-03-18 04:22:55.584 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:55.584 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17141 mm
17-03-18 04:22:55.584 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:22:55.584 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:55.584 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:22:55.594 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:22:55.594 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:55.594 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:22:55.594 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37444, sync = True, waitForSettling = False)
17-03-18 04:22:55.594 -07 000000467 INF: Z Motor: Moving to -0.171408 mm, started at -0.165152 mm, distance = -6.26 um
17-03-18 04:22:55.594 -07 000000585 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:22:55.604 -07 000000467 INF: FPGA: Xmit ZDACW 37444\n [Z Motor]
17-03-18 04:22:55.604 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:55.604 -07 000000591 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:55.604 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:22:55.604 -07 000000591 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:22:55.604 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:22:55.614 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:22:55.614 -07 000000467 INF: FPGA: 'ZDACW 37444' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:22:55.624 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:22:55.634 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:55.634 -07 000000424 INF: FPGA: Recv ZDACR 37444
17-03-18 04:22:55.644 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:22:55.644 -07 000000467 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:22:55.794 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:22:55.794 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:22:55.794 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:55.794 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:22:55.794 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:22:55.794 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:55.794 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:55.804 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:22:55.804 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:22:55.804 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:22:55.814 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:22:55.814 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:22:55.994 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:22:55.994 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:22:56.024 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:56.034 -07 000000467 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:22:56.034 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:22:56.034 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:56.034 -07 000000591 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:22:56.034 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:22:56.664 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:22:56.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:22:56.984 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:22:56.984 -07 000000438 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:22:56.994 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:56.994 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:22:57.004 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:22:57.004 -07 000000591 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:22:57.004 -07 000000591 INF: Y Motor: Moved to 74.8311 after 1419 ms (table move)
17-03-18 04:22:57.014 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171408 mm (DAC = 37444)
17-03-18 04:22:57.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.014 -07 000000444 INF: FPGA: Recv ZSGSRD 35975
17-03-18 04:22:57.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:57.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.024 -07 000000461 INF: FPGA: Recv ZSGSRD 35970
17-03-18 04:22:57.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.034 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.034 -07 000000461 INF: FPGA: Recv ZSGSRD 35966
17-03-18 04:22:57.044 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.044 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.044 -07 000000585 INF: FPGA: Recv ZSGSRD 35965
17-03-18 04:22:57.054 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.054 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.054 -07 000000461 INF: FPGA: Recv ZSGSRD 35973
17-03-18 04:22:57.064 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.064 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.064 -07 000000585 INF: FPGA: Recv ZSGSRD 35973
17-03-18 04:22:57.074 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.074 -07 000000444 INF: FPGA: Recv ZSGSRD 35978
17-03-18 04:22:57.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.084 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.084 -07 000000424 INF: FPGA: Recv ZSGSRD 35975
17-03-18 04:22:57.094 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.094 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.094 -07 000000461 INF: FPGA: Recv ZSGSRD 35972
17-03-18 04:22:57.104 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.104 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:57.104 -07 000000444 INF: FPGA: Recv ZSGSRD 35975
17-03-18 04:22:57.114 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.114 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:57.114 -07 000000487 INF: FPGA: Recv ZPIEZORD 31924
17-03-18 04:22:57.124 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.124 -07 000000479 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.9 V.
17-03-18 04:22:57.124 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35972 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35973 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35965 (-170.5 uncal um), Max = 35978 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:22:57.124 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35972, posNoise = 6, negNoise = 7
17-03-18 04:22:57.124 -07 000000479 INF: Z Motor: After move to -0.171408, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:57.124 -07 000000479 INF: Z Motor: Settle wait time = 1421 ms, measure time = 108 ms (allowed 150 ms), total time = 1529 ms
17-03-18 04:22:57.124 -07 000000479 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:22:57.174 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 04:22:57.174 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:22:57.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:57.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:57.174 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:57.174 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:57.174 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:22:57.174 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:57.174 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:22:57.174 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:22:57.184 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:22:57.184 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:22:57.184 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:22:57.184 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:22:57.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:22:57.234 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:22:57.534 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:22:57.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:22:57.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:22:57.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 04:22:57.574 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:22:57.574 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:22:57.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:22:57.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:22:57.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:57.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:22:57.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:22:57.674 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:22:57.674 -07 000000479 INF: Autofocus start
17-03-18 04:22:57.674 -07 000000479 INF: MeasureProfile start
17-03-18 04:22:57.674 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:22:57.684 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:22:57.684 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:22:57.684 -07 000000479 INF: MeasureProfile done
17-03-18 04:22:57.684 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:22:57.684 -07 000000479 INF: Autofocus finished
17-03-18 04:22:57.884 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:22:57.884 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:22:57.884 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.17141511117456. ----------
17-03-18 04:22:57.884 -07 000000610 INF: Cycle	124	Tile	19	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:22:57.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35977, sync = True, waitForSettling = True)
17-03-18 04:22:57.894 -07 000000610 INF: Z Motor: Moving to -0.164692 mm, started at -0.171415 mm, distance = 6.72 um
17-03-18 04:22:57.894 -07 000000610 INF: FPGA: Xmit ZDACW 35977\n [Z Motor]
17-03-18 04:22:57.894 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:22:57.904 -07 000000610 INF: FPGA: 'ZDACW 35977' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:22:57.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:22:57.904 -07 000000487 INF: FPGA: Recv ZDACR 35977
17-03-18 04:22:57.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:57.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:22:58.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.064 -07 000000474 INF: FPGA: Recv ZSGSRD 34927
17-03-18 04:22:58.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:22:58.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.074 -07 000000461 INF: FPGA: Recv ZSGSRD 34927
17-03-18 04:22:58.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.084 -07 000000561 INF: FPGA: Recv ZSGSRD 34929
17-03-18 04:22:58.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.094 -07 000000424 INF: FPGA: Recv ZSGSRD 34921
17-03-18 04:22:58.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.104 -07 000000474 INF: FPGA: Recv ZSGSRD 34931
17-03-18 04:22:58.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.114 -07 000000461 INF: FPGA: Recv ZSGSRD 34930
17-03-18 04:22:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.124 -07 000000561 INF: FPGA: Recv ZSGSRD 34919
17-03-18 04:22:58.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.134 -07 000000424 INF: FPGA: Recv ZSGSRD 34928
17-03-18 04:22:58.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.144 -07 000000487 INF: FPGA: Recv ZSGSRD 34924
17-03-18 04:22:58.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:22:58.154 -07 000000626 INF: FPGA: Recv ZSGSRD 34933
17-03-18 04:22:58.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:22:58.164 -07 000000467 INF: FPGA: Recv ZPIEZORD 30529
17-03-18 04:22:58.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:58.174 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.490 V. Piezo Error = -9.7 V.
17-03-18 04:22:58.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34927 (-163.8 uncal um), Error = 0.9 uncal um, Median = 34928 (-163.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34919 (-163.8 uncal um), Max = 34933 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:22:58.174 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34927, posNoise = 6, negNoise = 8
17-03-18 04:22:58.174 -07 000000610 INF: Z Motor: After move to -0.164692, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:22:58.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:22:58.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:22:58.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:22:58.174 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:22:58.174 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:22:58.174 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:22:58.174 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:22:58.174 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:22:58.174 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:22:58.174 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:22:58.174 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:22:58.174 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:22:58.174 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:22:58.184 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:22:58.184 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:22:58.184 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:22:58.184 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:22:58.194 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:22:58.194 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:22:58.194 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:22:58.194 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:22:58.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36154 150\n [Camera]
17-03-18 04:22:58.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:22:58.814 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:22:58.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:22:58.824 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:58.824 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:58.824 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:22:58.824 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:22:58.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:22:58.824 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:58.824 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:58.824 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:22:59.014 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36154 806
17-03-18 04:22:59.164 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:22:59.204 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:22:59.204 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:22:59.204 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:59.204 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:22:59.204 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:22:59.204 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:59.214 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:59.214 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:22:59.214 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:22:59.214 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:22:59.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:22:59.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:22:59.364 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:22:59.364 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:22:59.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:22:59.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:22:59.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:22:59.364 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:22:59.364 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:22:59.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:22:59.554 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:22:59.554 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:22:59.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36154 150' command took 2 ms to send, 1344 ms to get response, and 1355 ms overall
17-03-18 04:22:59.764 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:22:59.764 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:22:59.764 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:59.764 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:22:59.764 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:22:59.764 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:22:59.764 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:22:59.774 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:22:59.774 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:22:59.774 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:22:59.774 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:22:59.814 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:22:59.814 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:22:59.854 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:22:59.854 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:22:59.864 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:22:59.864 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 04:22:59.874 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:22:59.874 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:23:00.374 -07 000000467 INF: FPGA: Recv EMIN
17-03-18 04:23:00.374 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:23:00.374 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:23:00.374 -07 000000585 INF: FPGA: Recv EMCUR 
17-03-18 04:23:00.384 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:00.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:00.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.16470180948642. ------
17-03-18 04:23:00.504 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.0344,
17-03-18 04:23:00.504 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13927 mm
17-03-18 04:23:00.504 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:00.504 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:23:00.504 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 04:23:00.504 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30424, sync = True, waitForSettling = False)
17-03-18 04:23:00.504 -07 000000479 INF: Z Motor: Moving to -0.139272 mm, started at -0.164702 mm, distance = 25.43 um
17-03-18 04:23:00.514 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:00.514 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:00.524 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:23:00.524 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:00.524 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:23:00.534 -07 000000479 INF: FPGA: Xmit ZDACW 30424\n [Z Motor]
17-03-18 04:23:00.534 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:23:00.534 -07 000000012 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:00.534 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:23:00.544 -07 000000479 INF: FPGA: 'ZDACW 30424' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:23:00.544 -07 000000012 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:23:00.544 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:23:00.554 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:00.564 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:00.564 -07 000000561 INF: FPGA: Recv ZDACR 30424
17-03-18 04:23:00.574 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:23:00.574 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:00.574 -07 000000479 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 04:23:00.754 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:00.754 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 04:23:01.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:01.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:02.194 -07 000000479 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 04:23:02.204 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1659 ms overall
17-03-18 04:23:02.204 -07 000000012 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:23:02.204 -07 000000012 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:23:02.204 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1659 ms, distance = 14.918 mm, average velocity = 8.992 mm/sec
17-03-18 04:23:05.054 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:05.054 -07 000000487 INF: FPGA: Recv YRDPOS 122697
17-03-18 04:23:05.064 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:05.064 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:05.094 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:05.094 -07 000000012 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:23:05.094 -07 000000012 INF: Y Motor: Moved to 59.9106 after 4592 ms
17-03-18 04:23:05.104 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139272 mm (DAC = 30424)
17-03-18 04:23:05.104 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.104 -07 000000467 INF: FPGA: Recv ZSGSRD 30972
17-03-18 04:23:05.114 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:05.114 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.114 -07 000000487 INF: FPGA: Recv ZSGSRD 30968
17-03-18 04:23:05.124 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.124 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.124 -07 000000585 INF: FPGA: Recv ZSGSRD 30964
17-03-18 04:23:05.134 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.134 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30973
17-03-18 04:23:05.144 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.144 -07 000000626 INF: FPGA: Recv ZSGSRD 30969
17-03-18 04:23:05.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.154 -07 000000474 INF: FPGA: Recv ZSGSRD 30967
17-03-18 04:23:05.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.164 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.164 -07 000000585 INF: FPGA: Recv ZSGSRD 30971
17-03-18 04:23:05.174 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.174 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.174 -07 000000424 INF: FPGA: Recv ZSGSRD 30967
17-03-18 04:23:05.184 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.184 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.184 -07 000000474 INF: FPGA: Recv ZSGSRD 30971
17-03-18 04:23:05.194 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.194 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:05.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30970
17-03-18 04:23:05.204 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.204 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:05.204 -07 000000474 INF: FPGA: Recv ZPIEZORD 26418
17-03-18 04:23:05.214 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:05.214 -07 000000461 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -10.0 V.
17-03-18 04:23:05.214 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30969 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30964 (-138.4 uncal um), Max = 30973 (-138.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:23:05.214 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30969, posNoise = 4, negNoise = 5
17-03-18 04:23:05.214 -07 000000461 INF: Z Motor: After move to -0.139272, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:05.214 -07 000000461 INF: Z Motor: Settle wait time = 4595 ms, measure time = 108 ms (allowed 150 ms), total time = 4703 ms
17-03-18 04:23:05.214 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:05.264 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4755 ms
17-03-18 04:23:05.264 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:05.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:05.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:05.264 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:05.264 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:05.264 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:05.264 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:05.264 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:05.264 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:23:05.284 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 04:23:05.284 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:05.294 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:05.294 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:05.294 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:05.294 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 04:23:05.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:05.344 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:05.644 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:05.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:05.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:05.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:23:05.684 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:05.684 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:05.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:23:05.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:05.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:05.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:05.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:23:05.784 -07 000000561 INF: Image SNR check: start
17-03-18 04:23:05.784 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:05.784 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:05.794 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:05.794 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:05.794 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=127.16]
17-03-18 04:23:05.794 -07 000000561 INF: Autofocus start
17-03-18 04:23:05.794 -07 000000561 INF: MeasureProfile start
17-03-18 04:23:05.804 -07 000000561 INF: MeasureProfile done
17-03-18 04:23:05.814 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:05.814 -07 000000561 INF: Autofocus finished
17-03-18 04:23:05.924 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.994908,
17-03-18 04:23:05.994 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:05.994 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:05.994 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.13927477782933. ----------
17-03-18 04:23:05.994 -07 000000610 INF: Cycle	124	Tile	1	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:06.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28948, sync = True, waitForSettling = True)
17-03-18 04:23:06.004 -07 000000610 INF: Z Motor: Moving to -0.132515 mm, started at -0.139275 mm, distance = 6.76 um
17-03-18 04:23:06.004 -07 000000610 INF: FPGA: Xmit ZDACW 28948\n [Z Motor]
17-03-18 04:23:06.004 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:23:06.014 -07 000000610 INF: FPGA: 'ZDACW 28948' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:06.014 -07 000000461 INF: FPGA: Recv ZDACR 28948
17-03-18 04:23:06.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.174 -07 000000474 INF: FPGA: Recv ZSGSRD 29919
17-03-18 04:23:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.184 -07 000000625 INF: FPGA: Recv ZSGSRD 29915
17-03-18 04:23:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.194 -07 000000479 INF: FPGA: Recv ZSGSRD 29916
17-03-18 04:23:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.204 -07 000000487 INF: FPGA: Recv ZSGSRD 29914
17-03-18 04:23:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.214 -07 000000444 INF: FPGA: Recv ZSGSRD 29916
17-03-18 04:23:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29920
17-03-18 04:23:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.234 -07 000000444 INF: FPGA: Recv ZSGSRD 29917
17-03-18 04:23:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.244 -07 000000424 INF: FPGA: Recv ZSGSRD 29914
17-03-18 04:23:06.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.254 -07 000000591 INF: FPGA: Recv ZSGSRD 29912
17-03-18 04:23:06.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:06.264 -07 000000461 INF: FPGA: Recv ZSGSRD 29920
17-03-18 04:23:06.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:06.274 -07 000000625 INF: FPGA: Recv ZPIEZORD 25315
17-03-18 04:23:06.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:06.284 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.1 V.
17-03-18 04:23:06.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29916 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29916 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29912 (-131.7 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:06.284 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29916, posNoise = 4, negNoise = 4
17-03-18 04:23:06.284 -07 000000610 INF: Z Motor: After move to -0.132515, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:06.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:23:06.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:06.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:06.284 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:06.284 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:06.284 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:06.284 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:06.284 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:06.284 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:06.284 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:06.284 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:06.284 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:06.284 -07 000000585 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:23:06.284 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:06.284 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:06.304 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:23:06.304 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:23:06.304 -07 000000585 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 04:23:06.304 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:06.304 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:06.314 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:06.324 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:23:06.324 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 04:23:06.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29125 150\n [Camera]
17-03-18 04:23:06.524 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:06.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:06.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:06.944 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:06.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:06.944 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:06.944 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:06.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:06.944 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:06.954 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:06.954 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:23:06.954 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:06.954 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:23:07.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29125 804
17-03-18 04:23:07.284 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:07.324 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 04:23:07.324 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:23:07.324 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:07.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:23:07.324 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:23:07.324 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:07.324 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:07.334 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:07.334 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:23:07.334 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:23:07.484 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:07.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:07.484 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:07.494 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:07.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:07.494 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:07.604 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:07.604 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:23:07.614 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:07.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:23:07.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:23:07.684 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:07.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29125 150' command took 2 ms to send, 1350 ms to get response, and 1354 ms overall
17-03-18 04:23:07.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:07.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132510082444056. ------
17-03-18 04:23:07.684 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:07.684 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13892 mm
17-03-18 04:23:07.684 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:07.684 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:07.684 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:23:07.684 -07 000000467 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 04:23:07.684 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30347, sync = True, waitForSettling = False)
17-03-18 04:23:07.684 -07 000000012 INF: Z Motor: Moving to -0.138920 mm, started at -0.132510 mm, distance = -6.41 um
17-03-18 04:23:07.694 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:07.694 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:07.694 -07 000000561 INF: FPGA: Recv YRDPOS 122697
17-03-18 04:23:07.704 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:07.704 -07 000000467 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:07.704 -07 000000467 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:07.704 -07 000000467 INF: Y Motor: Moving 1331 steps2
17-03-18 04:23:07.704 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:07.714 -07 000000012 INF: FPGA: Xmit ZDACW 30347\n [Z Motor]
17-03-18 04:23:07.714 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:23:07.724 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:07.724 -07 000000012 INF: FPGA: 'ZDACW 30347' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:23:07.734 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:07.734 -07 000000461 INF: FPGA: Recv ZDACR 30347
17-03-18 04:23:07.744 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:23:07.744 -07 000000012 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:23:07.904 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:07.904 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 04:23:08.004 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:23:08.004 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:23:08.004 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:08.004 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:23:08.004 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:23:08.004 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:08.014 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:08.014 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:08.014 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 04:23:08.024 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 04:23:08.094 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:23:08.094 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:08.134 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:08.144 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:23:08.144 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:08.144 -07 000000467 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:08.144 -07 000000467 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:23:08.144 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 04:23:09.094 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:09.094 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:23:09.104 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.104 -07 000000467 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:09.134 -07 000000467 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:09.134 -07 000000467 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:09.134 -07 000000467 INF: Y Motor: Moved to 60.7324 after 1443 ms (table move)
17-03-18 04:23:09.134 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138920 mm (DAC = 30347)
17-03-18 04:23:09.134 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.144 -07 000000487 INF: FPGA: Recv ZSGSRD 30916
17-03-18 04:23:09.144 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:23:09.144 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.144 -07 000000591 INF: FPGA: Recv ZSGSRD 30924
17-03-18 04:23:09.154 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.154 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.154 -07 000000461 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:23:09.164 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.164 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.164 -07 000000012 INF: FPGA: Recv ZSGSRD 30917
17-03-18 04:23:09.174 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.174 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.174 -07 000000625 INF: FPGA: Recv ZSGSRD 30918
17-03-18 04:23:09.184 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.184 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.184 -07 000000461 INF: FPGA: Recv ZSGSRD 30912
17-03-18 04:23:09.194 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.194 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.194 -07 000000012 INF: FPGA: Recv ZSGSRD 30915
17-03-18 04:23:09.204 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.204 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.204 -07 000000625 INF: FPGA: Recv ZSGSRD 30912
17-03-18 04:23:09.214 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.214 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.214 -07 000000461 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:23:09.224 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.224 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:09.224 -07 000000626 INF: FPGA: Recv ZSGSRD 30916
17-03-18 04:23:09.234 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.234 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:09.234 -07 000000467 INF: FPGA: Recv ZPIEZORD 26620
17-03-18 04:23:09.244 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:09.244 -07 000000479 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 04:23:09.244 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30914 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30916 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30905 (-138.1 uncal um), Max = 30924 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:23:09.244 -07 000000479 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30914, posNoise = 10, negNoise = 9
17-03-18 04:23:09.244 -07 000000479 INF: Z Motor: After move to -0.138920, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:09.244 -07 000000479 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-18 04:23:09.244 -07 000000479 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:09.294 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 04:23:09.294 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:09.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:09.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:09.294 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:09.294 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:09.294 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:09.294 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:09.294 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:09.294 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:09.304 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:09.304 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:09.314 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:23:09.314 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:23:09.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:09.364 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:09.664 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:09.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:09.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:09.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611694720, 0x0, 559484976) start.
17-03-18 04:23:09.704 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:09.704 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:09.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:23:09.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611694720, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:23:09.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:09.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:09.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:23:09.804 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:09.804 -07 000000012 INF: Autofocus start
17-03-18 04:23:09.804 -07 000000012 INF: MeasureProfile start
17-03-18 04:23:09.804 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:09.814 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:09.814 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:09.814 -07 000000012 INF: MeasureProfile done
17-03-18 04:23:09.814 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:09.814 -07 000000012 INF: Autofocus finished
17-03-18 04:23:10.014 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:10.014 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:23:10.014 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138921446161533. ----------
17-03-18 04:23:10.024 -07 000000610 INF: Cycle	124	Tile	2	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:10.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28871, sync = True, waitForSettling = True)
17-03-18 04:23:10.024 -07 000000610 INF: Z Motor: Moving to -0.132163 mm, started at -0.138921 mm, distance = 6.76 um
17-03-18 04:23:10.024 -07 000000610 INF: FPGA: Xmit ZDACW 28871\n [Z Motor]
17-03-18 04:23:10.024 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:23:10.034 -07 000000610 INF: FPGA: 'ZDACW 28871' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:23:10.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:10.034 -07 000000591 INF: FPGA: Recv ZDACR 28871
17-03-18 04:23:10.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:10.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.194 -07 000000479 INF: FPGA: Recv ZSGSRD 29865
17-03-18 04:23:10.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:10.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.204 -07 000000461 INF: FPGA: Recv ZSGSRD 29858
17-03-18 04:23:10.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.214 -07 000000487 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:23:10.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.224 -07 000000591 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:23:10.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.234 -07 000000474 INF: FPGA: Recv ZSGSRD 29863
17-03-18 04:23:10.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.244 -07 000000487 INF: FPGA: Recv ZSGSRD 29864
17-03-18 04:23:10.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.254 -07 000000444 INF: FPGA: Recv ZSGSRD 29863
17-03-18 04:23:10.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.264 -07 000000591 INF: FPGA: Recv ZSGSRD 29867
17-03-18 04:23:10.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.274 -07 000000561 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:23:10.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:10.284 -07 000000626 INF: FPGA: Recv ZSGSRD 29859
17-03-18 04:23:10.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:10.294 -07 000000438 INF: FPGA: Recv ZPIEZORD 25245
17-03-18 04:23:10.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:10.304 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -10.1 V.
17-03-18 04:23:10.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29862 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29862 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29858 (-131.4 uncal um), Max = 29867 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:10.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29862, posNoise = 5, negNoise = 4
17-03-18 04:23:10.304 -07 000000610 INF: Z Motor: After move to -0.132163, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:10.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:23:10.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:10.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:10.304 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:10.304 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:10.304 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:10.304 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:10.304 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:10.304 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:10.304 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:10.304 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:10.304 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:10.304 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:10.314 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:23:10.314 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:10.314 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:23:10.314 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:10.324 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:23:10.324 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:23:10.324 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:23:10.324 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:23:10.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29048 150\n [Camera]
17-03-18 04:23:10.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:10.944 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:10.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:10.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:10.954 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:10.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:10.954 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:10.954 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:10.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:23:10.954 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:10.954 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:23:11.144 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29048 804
17-03-18 04:23:11.284 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.005817,
17-03-18 04:23:11.294 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:11.354 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:23:11.354 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:23:11.354 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:11.354 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:11.354 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:23:11.354 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:23:11.354 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:23:11.354 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:11.354 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:11.364 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:23:11.494 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:11.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:11.494 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:11.494 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:11.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:11.494 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:11.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 04:23:11.494 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:11.494 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:11.494 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:23:11.664 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:11.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:11.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:11.684 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:11.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29048 150' command took 2 ms to send, 1344 ms to get response, and 1354 ms overall
17-03-18 04:23:11.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:11.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132163174988401. ------
17-03-18 04:23:11.694 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:11.694 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13891 mm
17-03-18 04:23:11.694 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:11.694 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:23:11.694 -07 000000625 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:23:11.694 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30345, sync = True, waitForSettling = False)
17-03-18 04:23:11.694 -07 000000474 INF: Z Motor: Moving to -0.138911 mm, started at -0.132163 mm, distance = -6.75 um
17-03-18 04:23:11.694 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:11.704 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:11.704 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:11.704 -07 000000444 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:23:11.714 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:23:11.714 -07 000000474 INF: FPGA: Xmit ZDACW 30345\n [Z Motor]
17-03-18 04:23:11.714 -07 000000625 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:11.714 -07 000000625 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:11.714 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:23:11.714 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:23:11.724 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:11.724 -07 000000474 INF: FPGA: 'ZDACW 30345' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:23:11.734 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:11.744 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:11.744 -07 000000479 INF: FPGA: Recv ZDACR 30345
17-03-18 04:23:11.754 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:11.754 -07 000000474 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 04:23:11.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:23:11.894 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:23:11.894 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:11.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:23:11.894 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:23:11.894 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:11.894 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:11.894 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:11.894 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:23:11.904 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:23:11.924 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:11.924 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:23:12.104 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:23:12.104 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:12.154 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:12.154 -07 000000444 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:23:12.164 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:12.164 -07 000000625 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:12.164 -07 000000625 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:23:12.164 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 04:23:13.114 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:13.114 -07 000000467 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:23:13.124 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.124 -07 000000625 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:13.154 -07 000000625 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:13.154 -07 000000625 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:23:13.154 -07 000000625 INF: Y Motor: Moved to 61.5635 after 1455 ms (table move)
17-03-18 04:23:13.154 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138911 mm (DAC = 30345)
17-03-18 04:23:13.154 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.154 -07 000000591 INF: FPGA: Recv ZSGSRD 30910
17-03-18 04:23:13.164 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:23:13.164 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.164 -07 000000467 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:23:13.174 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.174 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.174 -07 000000591 INF: FPGA: Recv ZSGSRD 30918
17-03-18 04:23:13.184 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.184 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.184 -07 000000012 INF: FPGA: Recv ZSGSRD 30919
17-03-18 04:23:13.194 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.194 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.194 -07 000000561 INF: FPGA: Recv ZSGSRD 30914
17-03-18 04:23:13.204 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.204 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.204 -07 000000461 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:23:13.214 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.214 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.214 -07 000000591 INF: FPGA: Recv ZSGSRD 30920
17-03-18 04:23:13.224 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.224 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.224 -07 000000461 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:23:13.234 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.234 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.234 -07 000000585 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:23:13.244 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.244 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:13.244 -07 000000461 INF: FPGA: Recv ZSGSRD 30919
17-03-18 04:23:13.254 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.254 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:13.254 -07 000000424 INF: FPGA: Recv ZPIEZORD 26657
17-03-18 04:23:13.264 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:13.264 -07 000000487 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.4 V.
17-03-18 04:23:13.264 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30913 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30912 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30907 (-138.1 uncal um), Max = 30920 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:23:13.264 -07 000000487 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30913, posNoise = 7, negNoise = 6
17-03-18 04:23:13.264 -07 000000487 INF: Z Motor: After move to -0.138911, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:13.264 -07 000000487 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:23:13.264 -07 000000487 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:13.314 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:23:13.314 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:13.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:13.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:13.314 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:13.314 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:13.314 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:13.314 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:13.314 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:13.314 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:13.324 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:13.324 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:13.324 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:23:13.324 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:23:13.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:13.374 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:13.674 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:13.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:13.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:13.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:23:13.714 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:13.714 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:13.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:23:13.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:13.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:13.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:13.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:23:13.814 -07 000000561 INF: Autofocus start
17-03-18 04:23:13.814 -07 000000561 INF: MeasureProfile start
17-03-18 04:23:13.814 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:13.814 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:13.824 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:13.824 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:13.824 -07 000000561 INF: MeasureProfile done
17-03-18 04:23:13.824 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:13.824 -07 000000561 INF: Autofocus finished
17-03-18 04:23:14.024 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:14.024 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:14.024 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.138915021949391. ----------
17-03-18 04:23:14.024 -07 000000610 INF: Cycle	124	Tile	3	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:14.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28869, sync = True, waitForSettling = True)
17-03-18 04:23:14.034 -07 000000610 INF: Z Motor: Moving to -0.132154 mm, started at -0.138915 mm, distance = 6.76 um
17-03-18 04:23:14.034 -07 000000610 INF: FPGA: Xmit ZDACW 28869\n [Z Motor]
17-03-18 04:23:14.034 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:23:14.044 -07 000000610 INF: FPGA: 'ZDACW 28869' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:14.044 -07 000000561 INF: FPGA: Recv ZDACR 28869
17-03-18 04:23:14.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:14.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.204 -07 000000438 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:23:14.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.214 -07 000000424 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:23:14.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.224 -07 000000444 INF: FPGA: Recv ZSGSRD 29856
17-03-18 04:23:14.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.234 -07 000000467 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:23:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.244 -07 000000561 INF: FPGA: Recv ZSGSRD 29858
17-03-18 04:23:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.254 -07 000000444 INF: FPGA: Recv ZSGSRD 29865
17-03-18 04:23:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.264 -07 000000585 INF: FPGA: Recv ZSGSRD 29867
17-03-18 04:23:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.274 -07 000000012 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:23:14.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29858
17-03-18 04:23:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:14.294 -07 000000561 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:23:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:14.304 -07 000000585 INF: FPGA: Recv ZPIEZORD 25315
17-03-18 04:23:14.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:14.314 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -10.0 V.
17-03-18 04:23:14.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29860 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29856 (-131.3 uncal um), Max = 29867 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:14.314 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29860, posNoise = 7, negNoise = 4
17-03-18 04:23:14.314 -07 000000610 INF: Z Motor: After move to -0.132154, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:14.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:23:14.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:14.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:14.314 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:14.314 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:14.314 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:14.314 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:14.314 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:14.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:14.314 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:14.314 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:14.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:14.314 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:14.324 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:14.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:23:14.324 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:14.324 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:14.334 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:23:14.334 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:23:14.334 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:23:14.334 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:23:14.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29046 150\n [Camera]
17-03-18 04:23:14.534 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:14.954 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:14.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:14.954 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:14.954 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:14.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:23:14.954 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:14.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:14.964 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:14.964 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:14.964 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:23:15.144 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29046 804
17-03-18 04:23:15.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:15.354 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:23:15.354 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:23:15.354 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:15.354 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:23:15.354 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:23:15.354 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:15.354 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:15.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:23:15.364 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:15.364 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:23:15.494 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:15.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:15.494 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:15.494 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:15.494 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:23:15.504 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:15.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:15.504 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:15.504 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:15.504 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:23:15.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:15.694 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:15.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29046 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-18 04:23:15.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:15.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132150326564117. ------
17-03-18 04:23:15.694 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13851 mm
17-03-18 04:23:15.694 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:15.694 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:15.704 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:23:15.704 -07 000000487 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 04:23:15.704 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:15.704 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30257, sync = True, waitForSettling = False)
17-03-18 04:23:15.704 -07 000000625 INF: Z Motor: Moving to -0.138508 mm, started at -0.132150 mm, distance = -6.36 um
17-03-18 04:23:15.704 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:15.704 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:23:15.704 -07 000000012 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:23:15.714 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:15.714 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:15.714 -07 000000487 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:15.714 -07 000000487 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:15.714 -07 000000487 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:23:15.724 -07 000000625 INF: FPGA: Xmit ZDACW 30257\n [Z Motor]
17-03-18 04:23:15.724 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:23:15.734 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:15.734 -07 000000625 INF: FPGA: 'ZDACW 30257' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:15.744 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:15.744 -07 000000444 INF: FPGA: Recv ZDACR 30257
17-03-18 04:23:15.754 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:23:15.754 -07 000000625 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:23:15.904 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:23:15.904 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:23:15.904 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:15.904 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:23:15.904 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:23:15.904 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:15.904 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:15.914 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:23:15.914 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:23:15.914 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:23:15.914 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:15.914 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 214 ms overall
17-03-18 04:23:16.104 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:23:16.104 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:16.154 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:16.154 -07 000000012 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:23:16.164 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:16.164 -07 000000487 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:16.164 -07 000000487 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:23:16.164 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 04:23:16.644 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.981281,
17-03-18 04:23:16.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:17.114 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:17.114 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:23:17.124 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:17.124 -07 000000487 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:17.154 -07 000000487 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:17.154 -07 000000487 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:17.154 -07 000000487 INF: Y Motor: Moved to 62.3950 after 1450 ms (table move)
17-03-18 04:23:17.154 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138508 mm (DAC = 30257)
17-03-18 04:23:17.154 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.154 -07 000000585 INF: FPGA: Recv ZSGSRD 30849
17-03-18 04:23:17.164 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:17.164 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.164 -07 000000474 INF: FPGA: Recv ZSGSRD 30856
17-03-18 04:23:17.174 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.174 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.174 -07 000000467 INF: FPGA: Recv ZSGSRD 30848
17-03-18 04:23:17.184 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.184 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.184 -07 000000438 INF: FPGA: Recv ZSGSRD 30854
17-03-18 04:23:17.194 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.194 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.194 -07 000000012 INF: FPGA: Recv ZSGSRD 30841
17-03-18 04:23:17.204 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.204 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.204 -07 000000479 INF: FPGA: Recv ZSGSRD 30846
17-03-18 04:23:17.214 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.214 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.214 -07 000000444 INF: FPGA: Recv ZSGSRD 30850
17-03-18 04:23:17.224 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.224 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.224 -07 000000487 INF: FPGA: Recv ZSGSRD 30851
17-03-18 04:23:17.234 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.234 -07 000000444 INF: FPGA: Recv ZSGSRD 30855
17-03-18 04:23:17.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.244 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:17.244 -07 000000626 INF: FPGA: Recv ZSGSRD 30855
17-03-18 04:23:17.254 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.254 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:17.254 -07 000000479 INF: FPGA: Recv ZPIEZORD 26591
17-03-18 04:23:17.264 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:17.264 -07 000000561 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.4 V.
17-03-18 04:23:17.264 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30850 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30850 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30841 (-137.7 uncal um), Max = 30856 (-137.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:23:17.264 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30850, posNoise = 6, negNoise = 9
17-03-18 04:23:17.264 -07 000000561 INF: Z Motor: After move to -0.138508, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:17.264 -07 000000561 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:23:17.264 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:17.314 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:23:17.314 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:17.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:17.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:17.314 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:17.314 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:17.314 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:17.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:17.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:17.314 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:17.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:17.324 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:17.334 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:23:17.334 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:23:17.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:17.384 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:17.674 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:17.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:17.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:17.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 04:23:17.714 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:17.724 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:17.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:23:17.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:23:17.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:17.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:23:17.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:23:17.824 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:17.824 -07 000000487 INF: Autofocus start
17-03-18 04:23:17.824 -07 000000487 INF: MeasureProfile start
17-03-18 04:23:17.824 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:17.834 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:17.834 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:17.834 -07 000000487 INF: MeasureProfile done
17-03-18 04:23:17.834 -07 000000487 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:23:17.834 -07 000000487 INF: Autofocus finished
17-03-18 04:23:18.034 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:18.034 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:23:18.034 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138510296584461. ----------
17-03-18 04:23:18.044 -07 000000610 INF: Cycle	124	Tile	4	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:18.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-18 04:23:18.044 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138510 mm, distance = 6.84 um
17-03-18 04:23:18.044 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-18 04:23:18.044 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:23:18.054 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:23:18.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:18.054 -07 000000444 INF: FPGA: Recv ZDACR 28764
17-03-18 04:23:18.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:18.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.214 -07 000000438 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:23:18.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:18.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.224 -07 000000467 INF: FPGA: Recv ZSGSRD 29786
17-03-18 04:23:18.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.234 -07 000000487 INF: FPGA: Recv ZSGSRD 29790
17-03-18 04:23:18.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.244 -07 000000474 INF: FPGA: Recv ZSGSRD 29789
17-03-18 04:23:18.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.254 -07 000000444 INF: FPGA: Recv ZSGSRD 29785
17-03-18 04:23:18.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.264 -07 000000467 INF: FPGA: Recv ZSGSRD 29788
17-03-18 04:23:18.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.274 -07 000000487 INF: FPGA: Recv ZSGSRD 29789
17-03-18 04:23:18.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.284 -07 000000585 INF: FPGA: Recv ZSGSRD 29787
17-03-18 04:23:18.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.294 -07 000000479 INF: FPGA: Recv ZSGSRD 29786
17-03-18 04:23:18.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:18.304 -07 000000591 INF: FPGA: Recv ZSGSRD 29785
17-03-18 04:23:18.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:18.314 -07 000000625 INF: FPGA: Recv ZPIEZORD 25243
17-03-18 04:23:18.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:18.324 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -10.0 V.
17-03-18 04:23:18.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29782 (-130.9 uncal um), Max = 29790 (-130.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:23:18.324 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 3, negNoise = 5
17-03-18 04:23:18.324 -07 000000610 INF: Z Motor: After move to -0.131673, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:18.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 04:23:18.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:18.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:18.334 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:18.334 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:18.334 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:18.334 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:18.334 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:18.334 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:18.334 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:18.334 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:18.334 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:18.334 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:18.334 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:18.334 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:18.334 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:23:18.334 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:18.344 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:23:18.344 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:23:18.344 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:23:18.344 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:23:18.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28941 150\n [Camera]
17-03-18 04:23:18.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:18.964 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:18.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:18.964 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:18.964 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:18.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 04:23:18.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:18.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:18.974 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:18.974 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:18.974 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 04:23:19.164 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 804
17-03-18 04:23:19.304 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:19.344 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:23:19.344 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:23:19.344 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:19.354 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:23:19.354 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:23:19.354 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:19.354 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:19.354 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:19.354 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:23:19.354 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:23:19.514 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:19.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:19.514 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:19.514 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:19.514 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:23:19.514 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:19.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:19.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:19.514 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:19.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:23:19.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:19.704 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:19.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28941 150' command took 2 ms to send, 1343 ms to get response, and 1354 ms overall
17-03-18 04:23:19.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:19.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131681359077769. ------
17-03-18 04:23:19.704 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:19.704 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13846 mm
17-03-18 04:23:19.704 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:19.714 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:19.714 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:23:19.714 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:23:19.714 -07 000000479 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:23:19.714 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:19.714 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30247, sync = True, waitForSettling = False)
17-03-18 04:23:19.714 -07 000000012 INF: Z Motor: Moving to -0.138462 mm, started at -0.131681 mm, distance = -6.78 um
17-03-18 04:23:19.714 -07 000000487 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:23:19.724 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:19.724 -07 000000479 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:19.724 -07 000000479 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:19.724 -07 000000479 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:23:19.724 -07 000000012 INF: FPGA: Xmit ZDACW 30247\n [Z Motor]
17-03-18 04:23:19.724 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:23:19.734 -07 000000012 INF: FPGA: 'ZDACW 30247' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:23:19.734 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:19.744 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:19.754 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:19.754 -07 000000444 INF: FPGA: Recv ZDACR 30247
17-03-18 04:23:19.764 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:19.764 -07 000000012 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:23:19.914 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:23:19.914 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:23:19.914 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:19.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:23:19.914 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:23:19.914 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:19.924 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:19.924 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:23:19.924 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:23:19.934 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:23:19.934 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:19.934 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 223 ms overall
17-03-18 04:23:20.114 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:23:20.114 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 04:23:20.164 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:20.174 -07 000000487 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:23:20.174 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:23:20.174 -07 000000479 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:20.174 -07 000000479 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:23:20.174 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.099 mm/sec
17-03-18 04:23:21.124 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:21.124 -07 000000444 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:23:21.134 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:21.134 -07 000000479 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:21.164 -07 000000479 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:21.164 -07 000000479 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:23:21.164 -07 000000479 INF: Y Motor: Moved to 63.2236 after 1450 ms (table move)
17-03-18 04:23:21.164 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138462 mm (DAC = 30247)
17-03-18 04:23:21.164 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.164 -07 000000585 INF: FPGA: Recv ZSGSRD 30842
17-03-18 04:23:21.174 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:21.174 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.174 -07 000000487 INF: FPGA: Recv ZSGSRD 30843
17-03-18 04:23:21.184 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.184 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.184 -07 000000444 INF: FPGA: Recv ZSGSRD 30847
17-03-18 04:23:21.194 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.194 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.194 -07 000000487 INF: FPGA: Recv ZSGSRD 30846
17-03-18 04:23:21.204 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.204 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.204 -07 000000461 INF: FPGA: Recv ZSGSRD 30845
17-03-18 04:23:21.214 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.214 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.214 -07 000000591 INF: FPGA: Recv ZSGSRD 30845
17-03-18 04:23:21.224 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.224 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.224 -07 000000487 INF: FPGA: Recv ZSGSRD 30840
17-03-18 04:23:21.234 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.234 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.234 -07 000000012 INF: FPGA: Recv ZSGSRD 30844
17-03-18 04:23:21.244 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:21.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.244 -07 000000561 INF: FPGA: Recv ZSGSRD 30840
17-03-18 04:23:21.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.254 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:21.254 -07 000000012 INF: FPGA: Recv ZSGSRD 30848
17-03-18 04:23:21.264 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.264 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:21.264 -07 000000625 INF: FPGA: Recv ZPIEZORD 26632
17-03-18 04:23:21.274 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:21.274 -07 000000474 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -9.3 V.
17-03-18 04:23:21.274 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30844 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30844 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30840 (-137.6 uncal um), Max = 30848 (-137.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:21.274 -07 000000474 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30844, posNoise = 4, negNoise = 4
17-03-18 04:23:21.274 -07 000000474 INF: Z Motor: After move to -0.138462, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:21.274 -07 000000474 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:23:21.274 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:21.324 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:23:21.324 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:21.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:21.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:21.324 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:21.324 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:21.324 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:21.324 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:21.324 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:21.324 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:21.334 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:21.334 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:21.334 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:21.334 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:23:21.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:21.384 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:21.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:21.684 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:21.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:21.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:21.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 04:23:21.724 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:21.724 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:21.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:23:21.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:21.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:21.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:23:21.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:23:21.824 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:21.824 -07 000000474 INF: Autofocus start
17-03-18 04:23:21.824 -07 000000474 INF: MeasureProfile start
17-03-18 04:23:21.824 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:21.834 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:21.834 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:21.844 -07 000000474 INF: MeasureProfile done
17-03-18 04:23:21.844 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:23:21.844 -07 000000474 INF: Autofocus finished
17-03-18 04:23:22.004 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.011254,
17-03-18 04:23:22.034 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:22.034 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:23:22.034 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.13847175131161. ----------
17-03-18 04:23:22.034 -07 000000610 INF: Cycle	124	Tile	5	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:22.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28754, sync = True, waitForSettling = True)
17-03-18 04:23:22.044 -07 000000610 INF: Z Motor: Moving to -0.131627 mm, started at -0.138472 mm, distance = 6.84 um
17-03-18 04:23:22.044 -07 000000610 INF: FPGA: Xmit ZDACW 28754\n [Z Motor]
17-03-18 04:23:22.044 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:23:22.054 -07 000000610 INF: FPGA: 'ZDACW 28754' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:22.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:22.054 -07 000000625 INF: FPGA: Recv ZDACR 28754
17-03-18 04:23:22.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:22.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.214 -07 000000438 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:23:22.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:22.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.224 -07 000000444 INF: FPGA: Recv ZSGSRD 29789
17-03-18 04:23:22.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:23:22.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.244 -07 000000424 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:23:22.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.254 -07 000000626 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:23:22.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.264 -07 000000625 INF: FPGA: Recv ZSGSRD 29783
17-03-18 04:23:22.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.274 -07 000000474 INF: FPGA: Recv ZSGSRD 29787
17-03-18 04:23:22.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.284 -07 000000487 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:23:22.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.294 -07 000000438 INF: FPGA: Recv ZSGSRD 29785
17-03-18 04:23:22.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:22.304 -07 000000625 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:23:22.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:22.314 -07 000000474 INF: FPGA: Recv ZPIEZORD 25170
17-03-18 04:23:22.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:22.324 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.1 V.
17-03-18 04:23:22.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29781 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29774 (-130.8 uncal um), Max = 29789 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:23:22.324 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29781, posNoise = 8, negNoise = 7
17-03-18 04:23:22.324 -07 000000610 INF: Z Motor: After move to -0.131627, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:22.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:23:22.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:22.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:22.324 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:22.324 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:22.324 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:22.324 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:22.324 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:22.324 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:23:22.324 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:22.324 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:22.324 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:22.324 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:22.334 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:22.334 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:22.334 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:23:22.334 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:22.344 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:23:22.344 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:23:22.344 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:23:22.344 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:23:22.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28931 150\n [Camera]
17-03-18 04:23:22.554 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:22.974 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:22.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:22.974 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:22.974 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:22.974 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:23:22.974 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:22.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:22.974 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:22.974 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:22.974 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:23:23.164 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28931 804
17-03-18 04:23:23.314 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:23.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:23:23.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:23:23.364 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:23.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:23:23.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:23:23.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:23.374 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:23.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:23.374 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:23:23.384 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:23:23.524 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:23.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:23.524 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:23.524 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:23.524 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:23:23.524 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:23.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:23.524 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:23.524 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:23.524 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:23:23.704 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:23.704 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:23.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28931 150' command took 2 ms to send, 1348 ms to get response, and 1358 ms overall
17-03-18 04:23:23.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:23.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.131642813804918. ------
17-03-18 04:23:23.714 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:23.714 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13769 mm
17-03-18 04:23:23.714 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:23.714 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30079, sync = True, waitForSettling = False)
17-03-18 04:23:23.714 -07 000000461 INF: Z Motor: Moving to -0.137693 mm, started at -0.131643 mm, distance = -6.05 um
17-03-18 04:23:23.714 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:23:23.714 -07 000000438 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:23:23.724 -07 000000461 INF: FPGA: Xmit ZDACW 30079\n [Z Motor]
17-03-18 04:23:23.724 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:23.724 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:23.724 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:23:23.734 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:23.734 -07 000000461 INF: FPGA: 'ZDACW 30079' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:23:23.734 -07 000000467 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:23:23.744 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:23:23.744 -07 000000438 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:23.744 -07 000000438 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:23.744 -07 000000438 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:23:23.744 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:23.754 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:23.754 -07 000000591 INF: FPGA: Recv ZDACR 30079
17-03-18 04:23:23.764 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:23.764 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:23.764 -07 000000461 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:23:23.914 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:23:23.914 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:23:23.914 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:23.914 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:23:23.914 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:23:23.914 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:23.914 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:23.924 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:23:23.924 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:23:23.924 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:23:23.944 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:23.944 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:23:24.134 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:23:24.134 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:24.184 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:24.194 -07 000000625 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:23:24.194 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:24.194 -07 000000438 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:24.194 -07 000000438 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:23:24.194 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 04:23:25.144 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:25.144 -07 000000467 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:23:25.154 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:25.154 -07 000000438 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:25.174 -07 000000438 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:25.174 -07 000000438 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:23:25.174 -07 000000438 INF: Y Motor: Moved to 64.0566 after 1460 ms (table move)
17-03-18 04:23:25.184 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137693 mm (DAC = 30079)
17-03-18 04:23:25.184 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.184 -07 000000479 INF: FPGA: Recv ZSGSRD 30722
17-03-18 04:23:25.194 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:25.194 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.194 -07 000000012 INF: FPGA: Recv ZSGSRD 30725
17-03-18 04:23:25.204 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.204 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.204 -07 000000424 INF: FPGA: Recv ZSGSRD 30731
17-03-18 04:23:25.214 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.214 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.214 -07 000000591 INF: FPGA: Recv ZSGSRD 30723
17-03-18 04:23:25.224 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.224 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.224 -07 000000474 INF: FPGA: Recv ZSGSRD 30723
17-03-18 04:23:25.234 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.234 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.234 -07 000000461 INF: FPGA: Recv ZSGSRD 30721
17-03-18 04:23:25.244 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.244 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30717
17-03-18 04:23:25.254 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.254 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.254 -07 000000585 INF: FPGA: Recv ZSGSRD 30727
17-03-18 04:23:25.264 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.264 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.264 -07 000000474 INF: FPGA: Recv ZSGSRD 30723
17-03-18 04:23:25.274 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.274 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:25.274 -07 000000424 INF: FPGA: Recv ZSGSRD 30725
17-03-18 04:23:25.284 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.284 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:25.284 -07 000000479 INF: FPGA: Recv ZPIEZORD 26472
17-03-18 04:23:25.294 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:25.294 -07 000000444 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.3 V.
17-03-18 04:23:25.294 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30724 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30723 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30717 (-136.9 uncal um), Max = 30731 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:23:25.294 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30724, posNoise = 7, negNoise = 7
17-03-18 04:23:25.294 -07 000000444 INF: Z Motor: After move to -0.137693, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:25.294 -07 000000444 INF: Z Motor: Settle wait time = 1464 ms, measure time = 111 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:23:25.294 -07 000000444 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:25.334 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:23:25.334 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:25.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:25.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:25.334 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:25.334 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:25.334 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:25.334 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:25.334 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:25.334 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:25.344 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:25.344 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:25.354 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:23:25.354 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:23:25.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:25.404 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:25.704 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:25.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:25.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:25.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-18 04:23:25.744 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:25.744 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:25.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:23:25.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:23:25.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:25.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:23:25.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:23:25.844 -07 000000467 INF: Autofocus start
17-03-18 04:23:25.844 -07 000000467 INF: MeasureProfile start
17-03-18 04:23:25.844 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:25.844 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:25.854 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:25.854 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:25.854 -07 000000467 INF: MeasureProfile done
17-03-18 04:23:25.854 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:25.854 -07 000000467 INF: Autofocus finished
17-03-18 04:23:26.054 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:26.054 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:26.054 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.137700845854599. ----------
17-03-18 04:23:26.054 -07 000000610 INF: Cycle	124	Tile	6	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:26.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28603, sync = True, waitForSettling = True)
17-03-18 04:23:26.064 -07 000000610 INF: Z Motor: Moving to -0.130936 mm, started at -0.137701 mm, distance = 6.76 um
17-03-18 04:23:26.064 -07 000000610 INF: FPGA: Xmit ZDACW 28603\n [Z Motor]
17-03-18 04:23:26.064 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:23:26.074 -07 000000610 INF: FPGA: 'ZDACW 28603' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:26.074 -07 000000438 INF: FPGA: Recv ZDACR 28603
17-03-18 04:23:26.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:26.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.234 -07 000000585 INF: FPGA: Recv ZSGSRD 29669
17-03-18 04:23:26.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:26.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.244 -07 000000626 INF: FPGA: Recv ZSGSRD 29672
17-03-18 04:23:26.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.254 -07 000000625 INF: FPGA: Recv ZSGSRD 29675
17-03-18 04:23:26.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.264 -07 000000474 INF: FPGA: Recv ZSGSRD 29676
17-03-18 04:23:26.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.274 -07 000000561 INF: FPGA: Recv ZSGSRD 29672
17-03-18 04:23:26.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.284 -07 000000438 INF: FPGA: Recv ZSGSRD 29673
17-03-18 04:23:26.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.294 -07 000000467 INF: FPGA: Recv ZSGSRD 29674
17-03-18 04:23:26.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.304 -07 000000444 INF: FPGA: Recv ZSGSRD 29674
17-03-18 04:23:26.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.314 -07 000000561 INF: FPGA: Recv ZSGSRD 29668
17-03-18 04:23:26.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:26.324 -07 000000626 INF: FPGA: Recv ZSGSRD 29675
17-03-18 04:23:26.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:26.334 -07 000000625 INF: FPGA: Recv ZPIEZORD 25118
17-03-18 04:23:26.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:26.344 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -10.0 V.
17-03-18 04:23:26.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29673 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29668 (-130.1 uncal um), Max = 29676 (-130.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:23:26.344 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29673, posNoise = 3, negNoise = 5
17-03-18 04:23:26.344 -07 000000610 INF: Z Motor: After move to -0.130936, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:26.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:23:26.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:26.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:26.344 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:26.344 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:26.344 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:26.344 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:26.344 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:26.344 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:26.344 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:23:26.344 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:26.344 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:26.344 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:26.344 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:26.344 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:26.344 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:26.344 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:26.354 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:23:26.354 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:23:26.364 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:23:26.364 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:23:26.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28780 150\n [Camera]
17-03-18 04:23:26.564 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:26.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:26.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:26.984 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:26.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:26.984 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:26.984 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:26.984 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:23:26.984 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:26.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:26.984 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:26.984 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:26.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:23:27.174 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28780 804
17-03-18 04:23:27.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:27.354 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:23:27.354 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:23:27.354 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:27.364 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.004458,
17-03-18 04:23:27.364 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:27.364 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:23:27.364 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:23:27.364 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:27.364 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:27.364 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:23:27.364 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:23:27.524 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:27.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:27.524 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:27.664 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:27.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:27.664 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:27.664 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:27.664 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:23:27.664 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:27.664 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) start.
17-03-18 04:23:27.714 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:27.714 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:27.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28780 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-18 04:23:27.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:27.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.130948998893608. ------
17-03-18 04:23:27.724 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:27.724 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13748 mm
17-03-18 04:23:27.724 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:27.724 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:23:27.724 -07 000000444 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:23:27.724 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:27.724 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30032, sync = True, waitForSettling = False)
17-03-18 04:23:27.724 -07 000000591 INF: Z Motor: Moving to -0.137478 mm, started at -0.130949 mm, distance = -6.53 um
17-03-18 04:23:27.734 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:27.734 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:27.734 -07 000000585 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:23:27.744 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:23:27.744 -07 000000444 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:27.744 -07 000000444 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:27.744 -07 000000444 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:23:27.744 -07 000000591 INF: FPGA: Xmit ZDACW 30032\n [Z Motor]
17-03-18 04:23:27.744 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:23:27.754 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:27.754 -07 000000591 INF: FPGA: 'ZDACW 30032' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:23:27.764 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:27.774 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:27.774 -07 000000487 INF: FPGA: Recv ZDACR 30032
17-03-18 04:23:27.784 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:27.784 -07 000000591 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:23:27.954 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:27.954 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:23:28.064 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:23:28.064 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:23:28.064 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:28.064 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:23:28.064 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:23:28.064 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:28.064 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:28.064 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:28.064 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-18 04:23:28.074 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:23:28.134 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:23:28.134 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:23:28.184 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:28.194 -07 000000424 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:23:28.194 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:28.194 -07 000000444 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:28.194 -07 000000444 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:23:28.194 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-18 04:23:29.144 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:29.144 -07 000000461 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:23:29.154 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:29.154 -07 000000444 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:29.184 -07 000000444 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:29.184 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:29.184 -07 000000444 INF: Y Motor: Moved to 64.8784 after 1454 ms (table move)
17-03-18 04:23:29.184 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137478 mm (DAC = 30032)
17-03-18 04:23:29.184 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30692
17-03-18 04:23:29.194 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:23:29.194 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.194 -07 000000444 INF: FPGA: Recv ZSGSRD 30692
17-03-18 04:23:29.204 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.204 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.204 -07 000000424 INF: FPGA: Recv ZSGSRD 30693
17-03-18 04:23:29.214 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.214 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.214 -07 000000461 INF: FPGA: Recv ZSGSRD 30698
17-03-18 04:23:29.224 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.224 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.224 -07 000000467 INF: FPGA: Recv ZSGSRD 30689
17-03-18 04:23:29.234 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.234 -07 000000487 INF: FPGA: Recv ZSGSRD 30696
17-03-18 04:23:29.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.244 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.244 -07 000000438 INF: FPGA: Recv ZSGSRD 30688
17-03-18 04:23:29.254 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.254 -07 000000474 INF: FPGA: Recv ZSGSRD 30684
17-03-18 04:23:29.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.264 -07 000000424 INF: FPGA: Recv ZSGSRD 30692
17-03-18 04:23:29.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:29.274 -07 000000424 INF: FPGA: Recv ZSGSRD 30691
17-03-18 04:23:29.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.284 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:29.284 -07 000000461 INF: FPGA: Recv ZPIEZORD 26472
17-03-18 04:23:29.294 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:29.294 -07 000000561 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -9.3 V.
17-03-18 04:23:29.294 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30692 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30692 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30684 (-136.6 uncal um), Max = 30698 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:23:29.294 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30692, posNoise = 6, negNoise = 8
17-03-18 04:23:29.294 -07 000000561 INF: Z Motor: After move to -0.137478, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:29.294 -07 000000561 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:23:29.294 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:29.344 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:23:29.344 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:29.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:29.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:29.344 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:29.344 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:29.344 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:29.344 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:29.344 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:29.344 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:29.354 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:29.354 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:29.354 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:29.354 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:23:29.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:29.404 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:29.704 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:29.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:29.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:29.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:23:29.744 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:29.744 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:29.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:23:29.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:29.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:29.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:23:29.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:23:29.844 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:29.844 -07 000000012 INF: Autofocus start
17-03-18 04:23:29.844 -07 000000012 INF: MeasureProfile start
17-03-18 04:23:29.844 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:29.854 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:29.854 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:29.864 -07 000000012 INF: MeasureProfile done
17-03-18 04:23:29.864 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:23:29.864 -07 000000012 INF: Autofocus finished
17-03-18 04:23:30.054 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:30.054 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:30.054 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137495271066062. ----------
17-03-18 04:23:30.054 -07 000000610 INF: Cycle	124	Tile	7	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:30.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28540, sync = True, waitForSettling = True)
17-03-18 04:23:30.064 -07 000000610 INF: Z Motor: Moving to -0.130648 mm, started at -0.137495 mm, distance = 6.85 um
17-03-18 04:23:30.064 -07 000000610 INF: FPGA: Xmit ZDACW 28540\n [Z Motor]
17-03-18 04:23:30.064 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:23:30.074 -07 000000610 INF: FPGA: 'ZDACW 28540' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:30.074 -07 000000561 INF: FPGA: Recv ZDACR 28540
17-03-18 04:23:30.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:30.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.234 -07 000000438 INF: FPGA: Recv ZSGSRD 29626
17-03-18 04:23:30.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:30.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.244 -07 000000585 INF: FPGA: Recv ZSGSRD 29624
17-03-18 04:23:30.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.254 -07 000000424 INF: FPGA: Recv ZSGSRD 29626
17-03-18 04:23:30.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.264 -07 000000444 INF: FPGA: Recv ZSGSRD 29631
17-03-18 04:23:30.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.274 -07 000000012 INF: FPGA: Recv ZSGSRD 29626
17-03-18 04:23:30.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.284 -07 000000424 INF: FPGA: Recv ZSGSRD 29628
17-03-18 04:23:30.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.294 -07 000000625 INF: FPGA: Recv ZSGSRD 29625
17-03-18 04:23:30.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.304 -07 000000424 INF: FPGA: Recv ZSGSRD 29634
17-03-18 04:23:30.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.314 -07 000000438 INF: FPGA: Recv ZSGSRD 29627
17-03-18 04:23:30.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:30.334 -07 000000444 INF: FPGA: Recv ZSGSRD 29626
17-03-18 04:23:30.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:30.344 -07 000000424 INF: FPGA: Recv ZPIEZORD 25079
17-03-18 04:23:30.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:30.354 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -10.0 V.
17-03-18 04:23:30.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29626 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29624 (-129.9 uncal um), Max = 29634 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:23:30.354 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 7, negNoise = 3
17-03-18 04:23:30.354 -07 000000610 INF: Z Motor: After move to -0.130648, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:30.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 04:23:30.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:30.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:30.354 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:30.354 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:30.354 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:30.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:30.354 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:30.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:30.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:23:30.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:30.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:23:30.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:30.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:30.364 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:30.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:30.364 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:30.374 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:23:30.374 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:23:30.374 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:23:30.374 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:23:30.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28717 150\n [Camera]
17-03-18 04:23:30.574 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:30.994 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:30.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:30.994 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:30.994 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:30.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:30.994 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:31.004 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:31.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:23:31.004 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:31.004 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:23:31.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28717 804
17-03-18 04:23:31.334 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:31.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:23:31.394 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:23:31.394 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:31.394 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:23:31.394 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:23:31.394 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:31.394 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:31.394 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:23:31.394 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:31.404 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:23:31.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:31.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:31.544 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:31.544 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:31.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:31.544 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:31.664 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:31.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:31.664 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:31.664 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:23:31.674 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:31.674 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) start.
17-03-18 04:23:31.734 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:31.734 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:31.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28717 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-18 04:23:31.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:31.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130653485135087. ------
17-03-18 04:23:31.734 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:31.734 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13734 mm
17-03-18 04:23:31.734 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:31.734 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30002, sync = True, waitForSettling = False)
17-03-18 04:23:31.734 -07 000000591 INF: Z Motor: Moving to -0.137340 mm, started at -0.130653 mm, distance = -6.69 um
17-03-18 04:23:31.734 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:31.734 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:23:31.734 -07 000000467 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:23:31.744 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:31.744 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:31.744 -07 000000438 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:23:31.754 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:31.754 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:31.754 -07 000000467 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:31.754 -07 000000467 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:31.754 -07 000000467 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:23:31.764 -07 000000591 INF: FPGA: Xmit ZDACW 30002\n [Z Motor]
17-03-18 04:23:31.764 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:23:31.774 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:31.774 -07 000000591 INF: FPGA: 'ZDACW 30002' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:23:31.784 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:31.784 -07 000000474 INF: FPGA: Recv ZDACR 30002
17-03-18 04:23:31.794 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:23:31.794 -07 000000591 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:23:31.954 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:31.954 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:23:32.064 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:23:32.064 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:23:32.064 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:32.064 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 594819656, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:23:32.064 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:23:32.074 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:32.074 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:32.074 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 04:23:32.074 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:32.084 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-18 04:23:32.144 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:23:32.144 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:32.194 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:32.194 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:23:32.204 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:32.204 -07 000000467 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:32.204 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:23:32.204 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:23:32.724 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.996267,
17-03-18 04:23:33.154 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:33.154 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:23:33.164 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:33.164 -07 000000467 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:33.194 -07 000000467 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:33.194 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:33.194 -07 000000467 INF: Y Motor: Moved to 65.7134 after 1458 ms (table move)
17-03-18 04:23:33.204 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137340 mm (DAC = 30002)
17-03-18 04:23:33.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.204 -07 000000444 INF: FPGA: Recv ZSGSRD 30671
17-03-18 04:23:33.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:33.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.214 -07 000000467 INF: FPGA: Recv ZSGSRD 30676
17-03-18 04:23:33.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.224 -07 000000585 INF: FPGA: Recv ZSGSRD 30671
17-03-18 04:23:33.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.234 -07 000000591 INF: FPGA: Recv ZSGSRD 30665
17-03-18 04:23:33.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.244 -07 000000487 INF: FPGA: Recv ZSGSRD 30670
17-03-18 04:23:33.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.254 -07 000000438 INF: FPGA: Recv ZSGSRD 30663
17-03-18 04:23:33.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.264 -07 000000461 INF: FPGA: Recv ZSGSRD 30670
17-03-18 04:23:33.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.274 -07 000000591 INF: FPGA: Recv ZSGSRD 30671
17-03-18 04:23:33.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.284 -07 000000438 INF: FPGA: Recv ZSGSRD 30669
17-03-18 04:23:33.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:33.294 -07 000000591 INF: FPGA: Recv ZSGSRD 30674
17-03-18 04:23:33.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.304 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:33.304 -07 000000438 INF: FPGA: Recv ZPIEZORD 26433
17-03-18 04:23:33.314 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:33.314 -07 000000626 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.3 V.
17-03-18 04:23:33.314 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30670 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30670 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30663 (-136.5 uncal um), Max = 30676 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:23:33.314 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30670, posNoise = 6, negNoise = 7
17-03-18 04:23:33.314 -07 000000626 INF: Z Motor: After move to -0.137340, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:33.314 -07 000000626 INF: Z Motor: Settle wait time = 1461 ms, measure time = 110 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:23:33.314 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:33.354 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:23:33.354 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:33.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:33.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:33.354 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:33.354 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:33.354 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:33.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:33.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:33.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:33.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:33.364 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:33.374 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:23:33.374 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:23:33.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:33.424 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:23:33.724 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:23:33.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:23:33.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:33.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:23:33.764 -07 000000591 INF: FPGA: Recv @CAMSNAP 382
17-03-18 04:23:33.764 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:33.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 04:23:33.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:33.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:33.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:33.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:23:33.864 -07 000000461 INF: Autofocus start
17-03-18 04:23:33.864 -07 000000461 INF: MeasureProfile start
17-03-18 04:23:33.864 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:33.864 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:33.874 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:33.874 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:33.874 -07 000000461 INF: MeasureProfile done
17-03-18 04:23:33.874 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:23:33.874 -07 000000461 INF: Autofocus finished
17-03-18 04:23:34.074 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:34.074 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:34.074 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137353938398944. ----------
17-03-18 04:23:34.084 -07 000000610 INF: Cycle	124	Tile	8	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:34.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28497, sync = True, waitForSettling = True)
17-03-18 04:23:34.084 -07 000000610 INF: Z Motor: Moving to -0.130451 mm, started at -0.137354 mm, distance = 6.90 um
17-03-18 04:23:34.084 -07 000000610 INF: FPGA: Xmit ZDACW 28497\n [Z Motor]
17-03-18 04:23:34.084 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:23:34.094 -07 000000610 INF: FPGA: 'ZDACW 28497' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:34.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:34.094 -07 000000626 INF: FPGA: Recv ZDACR 28497
17-03-18 04:23:34.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:34.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.254 -07 000000626 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:23:34.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:34.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.264 -07 000000424 INF: FPGA: Recv ZSGSRD 29599
17-03-18 04:23:34.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.274 -07 000000626 INF: FPGA: Recv ZSGSRD 29598
17-03-18 04:23:34.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.284 -07 000000487 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:23:34.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.294 -07 000000444 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:23:34.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.304 -07 000000626 INF: FPGA: Recv ZSGSRD 29601
17-03-18 04:23:34.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.314 -07 000000444 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:23:34.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.324 -07 000000626 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:23:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.334 -07 000000444 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:23:34.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:34.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:34.344 -07 000000467 INF: FPGA: Recv ZSGSRD 29605
17-03-18 04:23:34.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 04:23:34.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:34.354 -07 000000012 INF: FPGA: Recv ZPIEZORD 25030
17-03-18 04:23:34.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:34.364 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 04:23:34.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29598 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29597 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29594 (-129.7 uncal um), Max = 29605 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:34.364 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29598, posNoise = 7, negNoise = 4
17-03-18 04:23:34.364 -07 000000610 INF: Z Motor: After move to -0.130451, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:34.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:23:34.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:34.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:34.364 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:34.364 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:34.364 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:34.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:34.364 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:34.364 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:34.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:23:34.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:34.364 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:34.364 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:34.374 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:34.374 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:34.374 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:34.374 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:34.374 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:23:34.384 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:23:34.384 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:23:34.384 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:23:34.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28674 150\n [Camera]
17-03-18 04:23:34.584 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:35.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:35.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:35.004 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:35.004 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:35.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:35.004 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:35.004 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:35.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:23:35.014 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:35.014 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:23:35.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28674 804
17-03-18 04:23:35.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:35.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:23:35.384 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:23:35.384 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:35.384 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:23:35.384 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:23:35.384 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:35.384 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:35.384 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:23:35.384 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:35.394 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:23:35.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:35.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:35.544 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:35.544 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:35.544 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:23:35.544 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:35.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:35.544 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:35.544 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:35.544 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:23:35.734 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:35.734 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:35.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28674 150' command took 2 ms to send, 1346 ms to get response, and 1354 ms overall
17-03-18 04:23:35.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:35.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130467182982976. ------
17-03-18 04:23:35.854 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:35.864 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13687 mm
17-03-18 04:23:35.864 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:35.864 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:35.864 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:23:35.864 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:35.864 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29899, sync = True, waitForSettling = False)
17-03-18 04:23:35.864 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:23:35.864 -07 000000461 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:23:35.864 -07 000000438 INF: Z Motor: Moving to -0.136869 mm, started at -0.130467 mm, distance = -6.40 um
17-03-18 04:23:35.874 -07 000000438 INF: FPGA: Xmit ZDACW 29899\n [Z Motor]
17-03-18 04:23:35.874 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:23:35.884 -07 000000438 INF: FPGA: 'ZDACW 29899' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:23:35.884 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:35.884 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:23:35.894 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:23:35.894 -07 000000461 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:35.894 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:35.894 -07 000000591 INF: FPGA: Recv ZDACR 29899
17-03-18 04:23:35.894 -07 000000461 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:35.894 -07 000000461 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:23:35.904 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:23:35.904 -07 000000438 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:23:35.904 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:35.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:23:35.934 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:23:35.934 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:23:35.934 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:35.944 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:23:35.944 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:35.944 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:35.944 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:23:35.944 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:35.954 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:23:36.064 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:36.064 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:23:36.274 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:23:36.274 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 04:23:36.324 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:36.334 -07 000000625 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:23:36.334 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:23:36.334 -07 000000461 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:36.334 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:23:36.334 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.197 mm/sec
17-03-18 04:23:36.664 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:36.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:37.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:37.284 -07 000000487 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:23:37.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:37.294 -07 000000461 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:37.334 -07 000000461 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:37.334 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:37.334 -07 000000461 INF: Y Motor: Moved to 66.5386 after 1468 ms (table move)
17-03-18 04:23:37.334 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136869 mm (DAC = 29899)
17-03-18 04:23:37.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.334 -07 000000487 INF: FPGA: Recv ZSGSRD 30601
17-03-18 04:23:37.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:37.344 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.344 -07 000000626 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:23:37.354 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.354 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.354 -07 000000467 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:23:37.364 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.364 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.364 -07 000000591 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:23:37.374 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.374 -07 000000585 INF: FPGA: Recv ZSGSRD 30587
17-03-18 04:23:37.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.384 -07 000000467 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:23:37.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.394 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.394 -07 000000591 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:23:37.404 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.404 -07 000000585 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:23:37.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.414 -07 000000424 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:23:37.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:37.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:37.424 -07 000000561 INF: FPGA: Recv ZSGSRD 30595
17-03-18 04:23:37.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.434 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:37.434 -07 000000438 INF: FPGA: Recv ZPIEZORD 26380
17-03-18 04:23:37.444 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:37.444 -07 000000474 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.3 V.
17-03-18 04:23:37.444 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30594 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30596 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30587 (-136.0 uncal um), Max = 30601 (-136.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:23:37.444 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30594, posNoise = 7, negNoise = 7
17-03-18 04:23:37.444 -07 000000474 INF: Z Motor: After move to -0.136869, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:37.444 -07 000000474 INF: Z Motor: Settle wait time = 1472 ms, measure time = 105 ms (allowed 150 ms), total time = 1577 ms
17-03-18 04:23:37.444 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:37.494 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 04:23:37.494 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:37.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:37.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:37.494 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:37.494 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:37.494 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:37.494 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:37.494 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:37.494 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:37.504 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:37.504 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:37.504 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:37.504 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:23:37.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:37.554 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:37.854 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:37.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:37.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:37.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:23:37.894 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:37.894 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:37.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:23:37.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:37.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:37.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:37.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:23:37.994 -07 000000467 INF: Autofocus start
17-03-18 04:23:37.994 -07 000000467 INF: MeasureProfile start
17-03-18 04:23:37.994 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:37.994 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:38.004 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:38.004 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:38.004 -07 000000467 INF: MeasureProfile done
17-03-18 04:23:38.004 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:23:38.004 -07 000000467 INF: Autofocus finished
17-03-18 04:23:38.084 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.960826,
17-03-18 04:23:38.204 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:38.204 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:38.204 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.13686569827617. ----------
17-03-18 04:23:38.204 -07 000000610 INF: Cycle	124	Tile	9	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:38.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28406, sync = True, waitForSettling = True)
17-03-18 04:23:38.214 -07 000000610 INF: Z Motor: Moving to -0.130034 mm, started at -0.136866 mm, distance = 6.83 um
17-03-18 04:23:38.214 -07 000000610 INF: FPGA: Xmit ZDACW 28406\n [Z Motor]
17-03-18 04:23:38.214 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:23:38.224 -07 000000610 INF: FPGA: 'ZDACW 28406' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:23:38.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:38.224 -07 000000012 INF: FPGA: Recv ZDACR 28406
17-03-18 04:23:38.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:38.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.414 -07 000000438 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:23:38.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 36 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:23:38.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.424 -07 000000487 INF: FPGA: Recv ZSGSRD 29530
17-03-18 04:23:38.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.444 -07 000000626 INF: FPGA: Recv ZSGSRD 29532
17-03-18 04:23:38.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 7 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:23:38.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.454 -07 000000487 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:23:38.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.464 -07 000000561 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:23:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.474 -07 000000585 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:23:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.484 -07 000000424 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:23:38.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.494 -07 000000461 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:23:38.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.504 -07 000000591 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:23:38.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:38.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29527
17-03-18 04:23:38.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:38.524 -07 000000591 INF: FPGA: Recv ZPIEZORD 24949
17-03-18 04:23:38.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:38.534 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.0 V.
17-03-18 04:23:38.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29527 (-129.2 uncal um), Max = 29539 (-129.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:38.534 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 8, negNoise = 4
17-03-18 04:23:38.534 -07 000000610 INF: Z Motor: After move to -0.130034, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:38.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms)
17-03-18 04:23:38.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:38.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:38.534 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:38.534 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:38.534 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:38.534 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:38.534 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:38.534 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:38.534 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:23:38.534 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:38.534 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 04:23:38.534 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:38.544 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:38.544 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:38.544 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:23:38.544 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:38.554 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:23:38.554 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:23:38.554 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:23:38.554 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:23:38.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28583 150\n [Camera]
17-03-18 04:23:38.754 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:39.174 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:39.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:39.174 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:39.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:39.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:39.184 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:39.184 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:39.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:23:39.184 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:39.184 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:23:39.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28583 804
17-03-18 04:23:39.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:39.574 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:23:39.574 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:23:39.574 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:39.574 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:23:39.574 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:23:39.574 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:39.584 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:23:39.584 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:23:39.584 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:39.584 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:23:39.724 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:39.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:39.724 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:39.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:39.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:39.724 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:39.734 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:39.734 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:23:39.734 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:39.734 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:23:39.914 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:39.914 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:39.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28583 150' command took 2 ms to send, 1344 ms to get response, and 1354 ms overall
17-03-18 04:23:39.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:39.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130036760769478. ------
17-03-18 04:23:39.914 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:39.914 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13685 mm
17-03-18 04:23:39.914 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:39.924 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:23:39.924 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 04:23:39.924 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:39.924 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:39.924 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-18 04:23:39.924 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29895, sync = True, waitForSettling = False)
17-03-18 04:23:39.924 -07 000000438 INF: Z Motor: Moving to -0.136851 mm, started at -0.130037 mm, distance = -6.81 um
17-03-18 04:23:39.924 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:23:39.934 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:23:39.934 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:39.934 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:39.934 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:23:39.934 -07 000000438 INF: FPGA: Xmit ZDACW 29895\n [Z Motor]
17-03-18 04:23:39.934 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:23:39.944 -07 000000438 INF: FPGA: 'ZDACW 29895' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:23:39.944 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:39.954 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:39.964 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:39.964 -07 000000424 INF: FPGA: Recv ZDACR 29895
17-03-18 04:23:39.974 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:39.974 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:23:40.124 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:23:40.124 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:23:40.124 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:40.134 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:23:40.134 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:23:40.134 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:40.134 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:40.134 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:23:40.134 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:23:40.144 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:40.144 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-18 04:23:40.144 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:23:40.324 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:23:40.324 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 04:23:40.374 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:40.384 -07 000000467 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:23:40.384 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:40.384 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:40.384 -07 000000626 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:23:40.384 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:23:41.334 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:41.334 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:23:41.344 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:41.344 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:41.374 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:41.374 -07 000000626 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:41.374 -07 000000626 INF: Y Motor: Moved to 67.3716 after 1446 ms (table move)
17-03-18 04:23:41.374 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136851 mm (DAC = 29895)
17-03-18 04:23:41.374 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.374 -07 000000561 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:23:41.384 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:41.384 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.384 -07 000000461 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:23:41.394 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.394 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.394 -07 000000487 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:23:41.404 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.404 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30595
17-03-18 04:23:41.414 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.414 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.414 -07 000000438 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:23:41.424 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.424 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.424 -07 000000438 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:23:41.434 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.434 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.434 -07 000000438 INF: FPGA: Recv ZSGSRD 30587
17-03-18 04:23:41.444 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.444 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.444 -07 000000561 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:23:41.454 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.454 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.454 -07 000000438 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:23:41.464 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.464 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:41.464 -07 000000561 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:23:41.474 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.474 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:41.474 -07 000000444 INF: FPGA: Recv ZPIEZORD 26395
17-03-18 04:23:41.484 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:41.484 -07 000000585 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.2 V.
17-03-18 04:23:41.484 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30593 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30593 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30587 (-136.0 uncal um), Max = 30596 (-136.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:23:41.484 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30593, posNoise = 3, negNoise = 6
17-03-18 04:23:41.484 -07 000000585 INF: Z Motor: After move to -0.136851, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:41.484 -07 000000585 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-18 04:23:41.484 -07 000000585 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:41.534 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:23:41.534 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:41.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:41.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:41.534 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:41.534 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:41.534 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:41.534 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:41.534 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:41.534 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:41.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:41.544 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:41.554 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:23:41.554 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:23:41.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:41.604 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:41.664 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:41.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:41.904 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:41.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:41.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:41.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 04:23:41.944 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:41.944 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:41.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:23:42.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:23:42.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:42.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:23:42.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:23:42.044 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:42.044 -07 000000626 INF: Autofocus start
17-03-18 04:23:42.044 -07 000000626 INF: MeasureProfile start
17-03-18 04:23:42.044 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:42.054 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:42.054 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:42.054 -07 000000626 INF: MeasureProfile done
17-03-18 04:23:42.054 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:42.064 -07 000000626 INF: Autofocus finished
17-03-18 04:23:42.254 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:42.254 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:42.254 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.136859274064028. ----------
17-03-18 04:23:42.254 -07 000000610 INF: Cycle	124	Tile	10	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:42.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28420, sync = True, waitForSettling = True)
17-03-18 04:23:42.264 -07 000000610 INF: Z Motor: Moving to -0.130098 mm, started at -0.136859 mm, distance = 6.76 um
17-03-18 04:23:42.264 -07 000000610 INF: FPGA: Xmit ZDACW 28420\n [Z Motor]
17-03-18 04:23:42.264 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:23:42.274 -07 000000610 INF: FPGA: 'ZDACW 28420' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:42.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:42.274 -07 000000467 INF: FPGA: Recv ZDACR 28420
17-03-18 04:23:42.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:42.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.434 -07 000000474 INF: FPGA: Recv ZSGSRD 29550
17-03-18 04:23:42.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:42.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.444 -07 000000424 INF: FPGA: Recv ZSGSRD 29541
17-03-18 04:23:42.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.454 -07 000000474 INF: FPGA: Recv ZSGSRD 29533
17-03-18 04:23:42.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.464 -07 000000561 INF: FPGA: Recv ZSGSRD 29536
17-03-18 04:23:42.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.474 -07 000000474 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:23:42.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.484 -07 000000424 INF: FPGA: Recv ZSGSRD 29541
17-03-18 04:23:42.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.494 -07 000000487 INF: FPGA: Recv ZSGSRD 29538
17-03-18 04:23:42.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.504 -07 000000561 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:23:42.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.514 -07 000000474 INF: FPGA: Recv ZSGSRD 29547
17-03-18 04:23:42.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:42.524 -07 000000424 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:23:42.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:42.534 -07 000000487 INF: FPGA: Recv ZPIEZORD 25000
17-03-18 04:23:42.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:42.544 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -10.0 V.
17-03-18 04:23:42.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29540 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29533 (-129.3 uncal um), Max = 29550 (-129.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:23:42.544 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29540, posNoise = 10, negNoise = 7
17-03-18 04:23:42.544 -07 000000610 INF: Z Motor: After move to -0.130098, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:42.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:23:42.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:42.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:42.544 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:42.544 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:42.544 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:42.544 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:42.544 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:42.544 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:42.544 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:42.544 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:42.544 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:42.544 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:42.554 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:42.554 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:42.554 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:42.554 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:42.564 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:23:42.564 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:23:42.564 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:23:42.564 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:23:42.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28596 150\n [Camera]
17-03-18 04:23:42.764 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:23:43.184 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:43.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:43.184 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:43.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:43.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:23:43.184 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:43.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:43.184 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:43.184 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:43.184 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:23:43.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28596 804
17-03-18 04:23:43.444 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.977204,
17-03-18 04:23:43.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:23:43.564 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:23:43.564 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:23:43.564 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:43.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:23:43.564 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:23:43.564 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:43.564 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:43.564 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:43.564 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:23:43.574 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:23:43.724 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1156
17-03-18 04:23:43.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1156
17-03-18 04:23:43.724 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:43.724 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:43.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:23:43.734 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1156
17-03-18 04:23:43.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1156
17-03-18 04:23:43.734 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:43.734 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:43.734 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:23:43.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:43.914 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:43.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28596 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-18 04:23:43.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:43.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130094578678754. ------
17-03-18 04:23:43.924 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:44.044 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13651 mm
17-03-18 04:23:44.044 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:44.044 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:44.044 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:23:44.044 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 04:23:44.044 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29821, sync = True, waitForSettling = False)
17-03-18 04:23:44.044 -07 000000461 INF: Z Motor: Moving to -0.136512 mm, started at -0.130095 mm, distance = -6.42 um
17-03-18 04:23:44.054 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 120 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 04:23:44.054 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:44.054 -07 000000438 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:23:44.064 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:23:44.064 -07 000000461 INF: FPGA: Xmit ZDACW 29821\n [Z Motor]
17-03-18 04:23:44.064 -07 000000467 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:44.064 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:44.064 -07 000000467 INF: Y Motor: Moving 1346 steps-23
17-03-18 04:23:44.064 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:23:44.074 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:44.074 -07 000000461 INF: FPGA: 'ZDACW 29821' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:23:44.084 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:44.094 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:44.094 -07 000000626 INF: FPGA: Recv ZDACR 29821
17-03-18 04:23:44.104 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:23:44.104 -07 000000461 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:23:44.124 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:23:44.124 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:23:44.124 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:44.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:23:44.124 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:23:44.124 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:44.134 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:44.134 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:23:44.134 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:23:44.134 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:23:44.274 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:44.274 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:23:44.454 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:23:44.454 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:44.504 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:44.504 -07 000000438 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:23:44.514 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:44.514 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:44.514 -07 000000467 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:23:44.514 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 04:23:45.464 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:45.464 -07 000000474 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:23:45.474 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:45.474 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:45.504 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:45.504 -07 000000467 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:45.504 -07 000000467 INF: Y Motor: Moved to 68.2046 after 1453 ms (table move)
17-03-18 04:23:45.504 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136512 mm (DAC = 29821)
17-03-18 04:23:45.504 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.504 -07 000000561 INF: FPGA: Recv ZSGSRD 30550
17-03-18 04:23:45.514 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:45.514 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.514 -07 000000561 INF: FPGA: Recv ZSGSRD 30535
17-03-18 04:23:45.524 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.524 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.524 -07 000000444 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:23:45.534 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.534 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.534 -07 000000461 INF: FPGA: Recv ZSGSRD 30538
17-03-18 04:23:45.544 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.544 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.544 -07 000000461 INF: FPGA: Recv ZSGSRD 30542
17-03-18 04:23:45.554 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.554 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.554 -07 000000474 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:23:45.564 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.564 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.564 -07 000000474 INF: FPGA: Recv ZSGSRD 30543
17-03-18 04:23:45.574 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.574 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.574 -07 000000474 INF: FPGA: Recv ZSGSRD 30540
17-03-18 04:23:45.584 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.584 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.584 -07 000000474 INF: FPGA: Recv ZSGSRD 30538
17-03-18 04:23:45.594 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.594 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:45.594 -07 000000474 INF: FPGA: Recv ZSGSRD 30540
17-03-18 04:23:45.604 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.604 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:45.604 -07 000000474 INF: FPGA: Recv ZPIEZORD 26320
17-03-18 04:23:45.614 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:45.614 -07 000000487 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.3 V.
17-03-18 04:23:45.614 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30538 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30539 (-135.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30528 (-135.6 uncal um), Max = 30550 (-135.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:23:45.614 -07 000000487 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30538, posNoise = 12, negNoise = 10
17-03-18 04:23:45.614 -07 000000487 INF: Z Motor: After move to -0.136512, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:45.614 -07 000000487 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:23:45.614 -07 000000487 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:45.664 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:23:45.664 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:45.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:45.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:45.664 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:45.664 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:45.664 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:45.664 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:45.664 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:45.664 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:45.674 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:45.674 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:45.674 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:23:45.674 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:23:45.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:45.724 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:23:46.024 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:23:46.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:23:46.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:46.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:23:46.064 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:46.064 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:46.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:23:46.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:46.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:46.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:23:46.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:23:46.164 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:46.164 -07 000000438 INF: Autofocus start
17-03-18 04:23:46.164 -07 000000438 INF: MeasureProfile start
17-03-18 04:23:46.164 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:46.174 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:46.174 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:46.174 -07 000000438 INF: MeasureProfile done
17-03-18 04:23:46.174 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:46.174 -07 000000438 INF: Autofocus finished
17-03-18 04:23:46.374 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:46.374 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:46.374 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136505942396231. ----------
17-03-18 04:23:46.374 -07 000000610 INF: Cycle	124	Tile	11	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:46.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28345, sync = True, waitForSettling = True)
17-03-18 04:23:46.384 -07 000000610 INF: Z Motor: Moving to -0.129755 mm, started at -0.136506 mm, distance = 6.75 um
17-03-18 04:23:46.384 -07 000000610 INF: FPGA: Xmit ZDACW 28345\n [Z Motor]
17-03-18 04:23:46.384 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:23:46.394 -07 000000610 INF: FPGA: 'ZDACW 28345' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:23:46.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:46.394 -07 000000626 INF: FPGA: Recv ZDACR 28345
17-03-18 04:23:46.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:46.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.554 -07 000000585 INF: FPGA: Recv ZSGSRD 29491
17-03-18 04:23:46.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:46.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.564 -07 000000626 INF: FPGA: Recv ZSGSRD 29484
17-03-18 04:23:46.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.574 -07 000000444 INF: FPGA: Recv ZSGSRD 29487
17-03-18 04:23:46.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.584 -07 000000626 INF: FPGA: Recv ZSGSRD 29487
17-03-18 04:23:46.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.594 -07 000000438 INF: FPGA: Recv ZSGSRD 29485
17-03-18 04:23:46.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.604 -07 000000444 INF: FPGA: Recv ZSGSRD 29487
17-03-18 04:23:46.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.614 -07 000000626 INF: FPGA: Recv ZSGSRD 29487
17-03-18 04:23:46.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.624 -07 000000444 INF: FPGA: Recv ZSGSRD 29486
17-03-18 04:23:46.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.634 -07 000000626 INF: FPGA: Recv ZSGSRD 29491
17-03-18 04:23:46.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:46.644 -07 000000585 INF: FPGA: Recv ZSGSRD 29487
17-03-18 04:23:46.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:46.654 -07 000000626 INF: FPGA: Recv ZPIEZORD 24924
17-03-18 04:23:46.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:46.664 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -10.0 V.
17-03-18 04:23:46.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29487 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29487 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29484 (-129.0 uncal um), Max = 29491 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:23:46.664 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29487, posNoise = 4, negNoise = 3
17-03-18 04:23:46.664 -07 000000610 INF: Z Motor: After move to -0.129755, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:46.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:23:46.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:46.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:46.664 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:46.664 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:46.664 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:46.664 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:46.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:46.664 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:46.664 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:46.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:23:46.664 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:46.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:46.664 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:46.664 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:46.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:23:46.674 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:46.674 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:46.674 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:46.684 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:23:46.684 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:23:46.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:23:46.684 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:23:46.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28522 150\n [Camera]
17-03-18 04:23:46.884 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:47.304 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:47.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:47.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:47.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:47.304 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:47.304 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:47.314 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:47.314 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:23:47.314 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:47.314 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:23:47.494 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28522 804
17-03-18 04:23:47.644 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:47.704 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:23:47.704 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:23:47.704 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:47.704 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:23:47.704 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:23:47.704 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:47.704 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:47.704 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:23:47.704 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:47.714 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:23:47.844 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:47.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:47.844 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:47.854 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:47.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:47.854 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:47.854 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:47.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:23:47.854 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:47.854 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:23:48.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:23:48.034 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:48.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28522 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-18 04:23:48.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:48.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.12975409543524. ------
17-03-18 04:23:48.044 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:48.044 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13640 mm
17-03-18 04:23:48.164 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:48.164 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:48.164 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29797, sync = True, waitForSettling = False)
17-03-18 04:23:48.164 -07 000000625 INF: Z Motor: Moving to -0.136402 mm, started at -0.129754 mm, distance = -6.65 um
17-03-18 04:23:48.164 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:23:48.164 -07 000000461 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 04:23:48.174 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 117 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 04:23:48.174 -07 000000625 INF: FPGA: Xmit ZDACW 29797\n [Z Motor]
17-03-18 04:23:48.174 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:23:48.184 -07 000000625 INF: FPGA: 'ZDACW 29797' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:23:48.184 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:48.184 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:23:48.194 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:48.194 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:23:48.194 -07 000000461 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:48.194 -07 000000461 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:48.194 -07 000000461 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:23:48.204 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:48.204 -07 000000487 INF: FPGA: Recv ZDACR 29797
17-03-18 04:23:48.214 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:48.214 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:23:48.214 -07 000000625 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:23:48.254 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:23:48.254 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:23:48.254 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:48.254 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:23:48.254 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:23:48.254 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:48.254 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:48.254 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:23:48.254 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:48.264 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:23:48.394 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:48.394 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:23:48.584 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:23:48.584 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:23:48.634 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:48.634 -07 000000424 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:23:48.644 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:48.644 -07 000000461 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:48.644 -07 000000461 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:23:48.644 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-18 04:23:48.804 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 3.996267,
17-03-18 04:23:49.594 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:49.594 -07 000000444 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:23:49.604 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:49.604 -07 000000461 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:49.634 -07 000000461 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:49.634 -07 000000461 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:23:49.634 -07 000000461 INF: Y Motor: Moved to 69.0269 after 1464 ms (table move)
17-03-18 04:23:49.634 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136402 mm (DAC = 29797)
17-03-18 04:23:49.634 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.634 -07 000000626 INF: FPGA: Recv ZSGSRD 30523
17-03-18 04:23:49.644 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:49.644 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.644 -07 000000474 INF: FPGA: Recv ZSGSRD 30520
17-03-18 04:23:49.654 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.654 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.654 -07 000000467 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:23:49.664 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.664 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.664 -07 000000625 INF: FPGA: Recv ZSGSRD 30516
17-03-18 04:23:49.674 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.674 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.674 -07 000000625 INF: FPGA: Recv ZSGSRD 30519
17-03-18 04:23:49.684 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.684 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.684 -07 000000467 INF: FPGA: Recv ZSGSRD 30518
17-03-18 04:23:49.694 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.694 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.694 -07 000000467 INF: FPGA: Recv ZSGSRD 30520
17-03-18 04:23:49.704 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.704 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.704 -07 000000467 INF: FPGA: Recv ZSGSRD 30526
17-03-18 04:23:49.714 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.714 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.714 -07 000000467 INF: FPGA: Recv ZSGSRD 30525
17-03-18 04:23:49.724 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.724 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:49.724 -07 000000467 INF: FPGA: Recv ZSGSRD 30525
17-03-18 04:23:49.734 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.734 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:49.734 -07 000000467 INF: FPGA: Recv ZPIEZORD 26331
17-03-18 04:23:49.744 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:49.744 -07 000000585 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V.
17-03-18 04:23:49.744 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30522 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30516 (-135.6 uncal um), Max = 30528 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:23:49.744 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30522, posNoise = 6, negNoise = 6
17-03-18 04:23:49.744 -07 000000585 INF: Z Motor: After move to -0.136402, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:49.744 -07 000000585 INF: Z Motor: Settle wait time = 1468 ms, measure time = 107 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:23:49.744 -07 000000585 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:49.794 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms
17-03-18 04:23:49.794 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:49.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:49.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:49.794 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:49.794 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:49.794 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:49.794 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:49.804 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:49.804 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:49.804 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:49.804 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:49.814 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:49.814 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:23:49.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:49.854 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:50.154 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:50.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:50.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:50.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:23:50.194 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:50.194 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:50.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:23:50.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:23:50.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:50.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:50.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:23:50.294 -07 000000012 INF: Autofocus start
17-03-18 04:23:50.294 -07 000000012 INF: MeasureProfile start
17-03-18 04:23:50.304 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:50.304 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:50.304 -07 000000012 INF: MeasureProfile done
17-03-18 04:23:50.304 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:23:50.304 -07 000000012 INF: Autofocus finished
17-03-18 04:23:50.314 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:23:50.324 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:50.524 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:50.524 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:23:50.524 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.136403155001963. ----------
17-03-18 04:23:50.524 -07 000000610 INF: Cycle	124	Tile	12	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:50.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28305, sync = True, waitForSettling = True)
17-03-18 04:23:50.534 -07 000000610 INF: Z Motor: Moving to -0.129572 mm, started at -0.136403 mm, distance = 6.83 um
17-03-18 04:23:50.534 -07 000000610 INF: FPGA: Xmit ZDACW 28305\n [Z Motor]
17-03-18 04:23:50.534 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:23:50.544 -07 000000610 INF: FPGA: 'ZDACW 28305' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:50.544 -07 000000561 INF: FPGA: Recv ZDACR 28305
17-03-18 04:23:50.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:50.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.704 -07 000000012 INF: FPGA: Recv ZSGSRD 29461
17-03-18 04:23:50.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:50.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.714 -07 000000467 INF: FPGA: Recv ZSGSRD 29460
17-03-18 04:23:50.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29461
17-03-18 04:23:50.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.734 -07 000000467 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:23:50.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.744 -07 000000487 INF: FPGA: Recv ZSGSRD 29459
17-03-18 04:23:50.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.754 -07 000000467 INF: FPGA: Recv ZSGSRD 29466
17-03-18 04:23:50.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.764 -07 000000487 INF: FPGA: Recv ZSGSRD 29451
17-03-18 04:23:50.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29459
17-03-18 04:23:50.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.784 -07 000000424 INF: FPGA: Recv ZSGSRD 29458
17-03-18 04:23:50.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:50.794 -07 000000012 INF: FPGA: Recv ZSGSRD 29461
17-03-18 04:23:50.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:50.804 -07 000000424 INF: FPGA: Recv ZPIEZORD 24870
17-03-18 04:23:50.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:50.814 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -10.1 V.
17-03-18 04:23:50.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29451 (-128.7 uncal um), Max = 29466 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:23:50.814 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 7, negNoise = 8
17-03-18 04:23:50.814 -07 000000610 INF: Z Motor: After move to -0.129572, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:50.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:23:50.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:50.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:50.814 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:50.814 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:50.814 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:50.814 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:50.814 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:50.814 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:50.814 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:23:50.814 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:50.814 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:50.814 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:50.814 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:50.814 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:50.824 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:50.824 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:50.834 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:23:50.834 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:23:50.834 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:23:50.834 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:23:50.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28481 150\n [Camera]
17-03-18 04:23:51.034 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:51.454 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:51.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:51.454 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:51.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:51.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:51.454 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:51.454 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:51.454 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:23:51.464 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:51.464 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:23:51.644 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 804
17-03-18 04:23:51.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:51.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:51.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:51.844 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:23:51.844 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:23:51.844 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:51.844 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:23:51.844 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:23:51.844 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:51.854 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:51.854 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:23:51.854 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:51.854 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:23:51.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:51.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:51.994 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:51.994 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:51.994 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:23:51.994 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:51.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:52.004 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:52.004 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:52.004 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:23:52.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:23:52.184 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:52.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28481 150' command took 2 ms to send, 1348 ms to get response, and 1355 ms overall
17-03-18 04:23:52.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:52.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.129574217495271. ------
17-03-18 04:23:52.194 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:52.194 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13594 mm
17-03-18 04:23:52.194 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:52.194 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:23:52.194 -07 000000444 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 04:23:52.194 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29696, sync = True, waitForSettling = False)
17-03-18 04:23:52.194 -07 000000561 INF: Z Motor: Moving to -0.135940 mm, started at -0.129574 mm, distance = -6.37 um
17-03-18 04:23:52.194 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:52.204 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:23:52.204 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:52.204 -07 000000474 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:23:52.214 -07 000000561 INF: FPGA: Xmit ZDACW 29696\n [Z Motor]
17-03-18 04:23:52.214 -07 000000444 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:23:52.214 -07 000000444 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:52.214 -07 000000444 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:52.214 -07 000000444 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:23:52.214 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:23:52.224 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:52.224 -07 000000561 INF: FPGA: 'ZDACW 29696' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:23:52.234 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:52.244 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:52.244 -07 000000474 INF: FPGA: Recv ZDACR 29696
17-03-18 04:23:52.254 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:23:52.254 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:23:52.384 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:23:52.384 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:23:52.384 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:52.384 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:52.384 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:23:52.384 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:23:52.384 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:52.394 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:23:52.394 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:23:52.394 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:23:52.424 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:52.424 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:23:52.604 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:23:52.604 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:23:52.654 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:52.664 -07 000000487 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:23:52.664 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:23:52.664 -07 000000444 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:52.664 -07 000000444 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:23:52.664 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 04:23:53.614 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:53.614 -07 000000585 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:23:53.624 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.624 -07 000000444 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:53.654 -07 000000444 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:53.654 -07 000000444 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:53.654 -07 000000444 INF: Y Motor: Moved to 69.8628 after 1454 ms (table move)
17-03-18 04:23:53.654 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135940 mm (DAC = 29696)
17-03-18 04:23:53.654 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.654 -07 000000626 INF: FPGA: Recv ZSGSRD 30457
17-03-18 04:23:53.664 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:23:53.664 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.664 -07 000000626 INF: FPGA: Recv ZSGSRD 30451
17-03-18 04:23:53.674 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.674 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.674 -07 000000626 INF: FPGA: Recv ZSGSRD 30460
17-03-18 04:23:53.684 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.684 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.684 -07 000000474 INF: FPGA: Recv ZSGSRD 30452
17-03-18 04:23:53.694 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.694 -07 000000474 INF: FPGA: Recv ZSGSRD 30451
17-03-18 04:23:53.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.704 -07 000000424 INF: FPGA: Recv ZSGSRD 30451
17-03-18 04:23:53.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.714 -07 000000424 INF: FPGA: Recv ZSGSRD 30446
17-03-18 04:23:53.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.724 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.724 -07 000000474 INF: FPGA: Recv ZSGSRD 30448
17-03-18 04:23:53.734 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.734 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.734 -07 000000561 INF: FPGA: Recv ZSGSRD 30448
17-03-18 04:23:53.744 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:53.744 -07 000000561 INF: FPGA: Recv ZSGSRD 30453
17-03-18 04:23:53.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.754 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:53.754 -07 000000467 INF: FPGA: Recv ZPIEZORD 26241
17-03-18 04:23:53.764 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:53.764 -07 000000461 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.3 V.
17-03-18 04:23:53.764 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30452 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30451 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30446 (-135.1 uncal um), Max = 30460 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:23:53.764 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30452, posNoise = 8, negNoise = 6
17-03-18 04:23:53.764 -07 000000461 INF: Z Motor: After move to -0.135940, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:53.764 -07 000000461 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:23:53.764 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:53.814 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:23:53.814 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:53.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:53.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:53.814 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:53.814 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:53.814 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:53.814 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:53.814 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:23:53.814 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:53.814 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:53.814 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:53.824 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:53.824 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:23:53.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:53.874 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:54.164 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.012614,
17-03-18 04:23:54.174 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:54.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:54.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:54.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 04:23:54.214 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:54.214 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:54.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:23:54.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:23:54.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:54.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:23:54.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:23:54.314 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:54.314 -07 000000438 INF: Autofocus start
17-03-18 04:23:54.314 -07 000000438 INF: MeasureProfile start
17-03-18 04:23:54.314 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:54.324 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:23:54.324 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:54.324 -07 000000438 INF: MeasureProfile done
17-03-18 04:23:54.324 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:23:54.324 -07 000000438 INF: Autofocus finished
17-03-18 04:23:54.524 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:54.524 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:54.524 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.13595346015204. ----------
17-03-18 04:23:54.534 -07 000000610 INF: Cycle	124	Tile	13	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:54.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28220, sync = True, waitForSettling = True)
17-03-18 04:23:54.534 -07 000000610 INF: Z Motor: Moving to -0.129183 mm, started at -0.135953 mm, distance = 6.77 um
17-03-18 04:23:54.534 -07 000000610 INF: FPGA: Xmit ZDACW 28220\n [Z Motor]
17-03-18 04:23:54.534 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:23:54.544 -07 000000610 INF: FPGA: 'ZDACW 28220' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:23:54.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:54.544 -07 000000461 INF: FPGA: Recv ZDACR 28220
17-03-18 04:23:54.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.704 -07 000000487 INF: FPGA: Recv ZSGSRD 29406
17-03-18 04:23:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.714 -07 000000626 INF: FPGA: Recv ZSGSRD 29402
17-03-18 04:23:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.724 -07 000000487 INF: FPGA: Recv ZSGSRD 29398
17-03-18 04:23:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.734 -07 000000625 INF: FPGA: Recv ZSGSRD 29395
17-03-18 04:23:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.744 -07 000000487 INF: FPGA: Recv ZSGSRD 29397
17-03-18 04:23:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.754 -07 000000626 INF: FPGA: Recv ZSGSRD 29401
17-03-18 04:23:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.764 -07 000000625 INF: FPGA: Recv ZSGSRD 29388
17-03-18 04:23:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29404
17-03-18 04:23:54.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.784 -07 000000625 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:23:54.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:54.794 -07 000000438 INF: FPGA: Recv ZSGSRD 29395
17-03-18 04:23:54.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:54.804 -07 000000625 INF: FPGA: Recv ZPIEZORD 24826
17-03-18 04:23:54.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:54.814 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -10.0 V.
17-03-18 04:23:54.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29399 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29388 (-128.3 uncal um), Max = 29406 (-128.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:23:54.814 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29399, posNoise = 7, negNoise = 11
17-03-18 04:23:54.814 -07 000000610 INF: Z Motor: After move to -0.129183, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:54.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:23:54.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:54.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:54.814 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:54.814 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:54.814 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:54.814 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:54.814 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:54.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:54.814 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:23:54.814 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:54.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:23:54.814 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:54.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:23:54.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:54.824 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:23:54.824 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:54.834 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:23:54.834 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:23:54.834 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:23:54.834 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:23:54.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28397 150\n [Camera]
17-03-18 04:23:55.034 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:55.454 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:55.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:55.454 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:55.454 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:55.454 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:23:55.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:55.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:55.464 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:55.464 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:55.464 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:23:55.644 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28397 804
17-03-18 04:23:55.794 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:55.854 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:23:55.854 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:23:55.854 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:55.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:23:55.854 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:23:55.854 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:55.854 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:55.854 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:23:55.864 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:55.864 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:23:56.004 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:23:56.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:23:56.004 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:56.004 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:56.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:23:56.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:23:56.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:23:56.004 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:56.004 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:56.004 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:23:56.194 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:23:56.194 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:23:56.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28397 150' command took 2 ms to send, 1342 ms to get response, and 1355 ms overall
17-03-18 04:23:56.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:23:56.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129188764766765. ------
17-03-18 04:23:56.194 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:56.194 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13561 mm
17-03-18 04:23:56.194 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:23:56.194 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:23:56.194 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29623, sync = True, waitForSettling = False)
17-03-18 04:23:56.204 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:56.204 -07 000000585 INF: Z Motor: Moving to -0.135605 mm, started at -0.129189 mm, distance = -6.42 um
17-03-18 04:23:56.204 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:56.204 -07 000000585 INF: FPGA: Xmit ZDACW 29623\n [Z Motor]
17-03-18 04:23:56.204 -07 000000474 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:23:56.204 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:23:56.214 -07 000000585 INF: FPGA: 'ZDACW 29623' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:56.334 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:56.334 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:23:56.344 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:23:56.344 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 04:23:56.344 -07 000000474 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:56.344 -07 000000474 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:23:56.344 -07 000000474 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:23:56.354 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:56.354 -07 000000424 INF: FPGA: Recv ZDACR 29623
17-03-18 04:23:56.364 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:23:56.364 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:23:56.364 -07 000000585 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-18 04:23:56.404 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:23:56.404 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:23:56.404 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:56.404 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:23:56.404 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:23:56.404 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:56.404 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:23:56.404 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:23:56.404 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:23:56.414 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:23:56.544 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:23:56.544 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 342 ms overall
17-03-18 04:23:56.664 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:23:56.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:23:56.734 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:23:56.734 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:23:56.784 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:56.784 -07 000000561 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:23:56.794 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:23:56.794 -07 000000474 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:56.794 -07 000000474 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:23:56.794 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 04:23:57.744 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:23:57.744 -07 000000467 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:23:57.754 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:57.754 -07 000000474 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:23:57.784 -07 000000474 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:23:57.784 -07 000000474 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:23:57.784 -07 000000474 INF: Y Motor: Moved to 70.6880 after 1580 ms (table move)
17-03-18 04:23:57.784 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135605 mm (DAC = 29623)
17-03-18 04:23:57.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.784 -07 000000474 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:23:57.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:23:57.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.794 -07 000000012 INF: FPGA: Recv ZSGSRD 30400
17-03-18 04:23:57.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.804 -07 000000012 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:23:57.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.814 -07 000000012 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:23:57.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.824 -07 000000012 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:23:57.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.834 -07 000000012 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:23:57.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.844 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.844 -07 000000012 INF: FPGA: Recv ZSGSRD 30393
17-03-18 04:23:57.854 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.854 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.854 -07 000000012 INF: FPGA: Recv ZSGSRD 30394
17-03-18 04:23:57.864 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.864 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.864 -07 000000012 INF: FPGA: Recv ZSGSRD 30399
17-03-18 04:23:57.874 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.874 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:57.874 -07 000000012 INF: FPGA: Recv ZSGSRD 30398
17-03-18 04:23:57.884 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.884 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:57.884 -07 000000444 INF: FPGA: Recv ZPIEZORD 26177
17-03-18 04:23:57.894 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:57.894 -07 000000626 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.520 V. Piezo Error = -9.3 V.
17-03-18 04:23:57.894 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30398 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30400 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30393 (-134.8 uncal um), Max = 30401 (-134.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:23:57.894 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30398, posNoise = 3, negNoise = 5
17-03-18 04:23:57.894 -07 000000626 INF: Z Motor: After move to -0.135605, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:57.894 -07 000000626 INF: Z Motor: Settle wait time = 1583 ms, measure time = 107 ms (allowed 150 ms), total time = 1690 ms
17-03-18 04:23:57.894 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:23:57.944 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 04:23:57.944 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:23:57.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:57.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:57.944 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:57.944 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:57.944 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:23:57.944 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:57.944 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:23:57.944 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:23:57.954 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:57.954 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:23:57.954 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:23:57.954 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:23:57.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:23:58.014 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:23:58.304 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:23:58.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:23:58.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:23:58.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:23:58.344 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:23:58.344 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:23:58.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 388 ms overall
17-03-18 04:23:58.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:23:58.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:58.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:23:58.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:23:58.454 -07 000000444 INF: Autofocus start
17-03-18 04:23:58.454 -07 000000444 INF: MeasureProfile start
17-03-18 04:23:58.454 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:23:58.454 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:23:58.464 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:23:58.464 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:23:58.464 -07 000000444 INF: MeasureProfile done
17-03-18 04:23:58.464 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:23:58.464 -07 000000444 INF: Autofocus finished
17-03-18 04:23:58.664 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:23:58.664 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:23:58.664 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135606552696385. ----------
17-03-18 04:23:58.664 -07 000000610 INF: Cycle	124	Tile	14	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:23:58.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28130, sync = True, waitForSettling = True)
17-03-18 04:23:58.674 -07 000000610 INF: Z Motor: Moving to -0.128771 mm, started at -0.135607 mm, distance = 6.84 um
17-03-18 04:23:58.674 -07 000000610 INF: FPGA: Xmit ZDACW 28130\n [Z Motor]
17-03-18 04:23:58.674 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:23:58.684 -07 000000610 INF: FPGA: 'ZDACW 28130' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:23:58.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:23:58.684 -07 000000012 INF: FPGA: Recv ZDACR 28130
17-03-18 04:23:58.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:23:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.844 -07 000000474 INF: FPGA: Recv ZSGSRD 29335
17-03-18 04:23:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:23:58.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.854 -07 000000012 INF: FPGA: Recv ZSGSRD 29337
17-03-18 04:23:58.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.864 -07 000000625 INF: FPGA: Recv ZSGSRD 29332
17-03-18 04:23:58.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29334
17-03-18 04:23:58.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29339
17-03-18 04:23:58.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29338
17-03-18 04:23:58.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29337
17-03-18 04:23:58.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.914 -07 000000012 INF: FPGA: Recv ZSGSRD 29335
17-03-18 04:23:58.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29333
17-03-18 04:23:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:23:58.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29335
17-03-18 04:23:58.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:23:58.944 -07 000000424 INF: FPGA: Recv ZPIEZORD 24755
17-03-18 04:23:58.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:23:58.954 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.292 V. Piezo Error = -10.0 V.
17-03-18 04:23:58.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29336 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29335 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29332 (-128.0 uncal um), Max = 29339 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:23:58.954 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29336, posNoise = 3, negNoise = 4
17-03-18 04:23:58.954 -07 000000610 INF: Z Motor: After move to -0.128771, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:23:58.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:23:58.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:23:58.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:23:58.954 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:23:58.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:23:58.954 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:23:58.954 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:23:58.954 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:23:58.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:23:58.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:23:58.954 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:23:58.954 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 04:23:58.954 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:23:58.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:23:58.954 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:23:58.964 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:23:58.964 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:23:58.974 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:23:58.974 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:23:58.974 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:23:58.974 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:23:58.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28307 150\n [Camera]
17-03-18 04:23:59.174 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:23:59.524 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.011254,
17-03-18 04:23:59.594 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:23:59.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:23:59.594 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:23:59.594 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:23:59.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:23:59.604 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:23:59.604 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:23:59.604 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:23:59.604 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:23:59.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:23:59.784 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28307 804
17-03-18 04:23:59.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:23:59.994 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:23:59.994 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:23:59.994 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:59.994 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:23:59.994 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:23:59.994 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:23:59.994 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:23:59.994 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:24:00.004 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:24:00.004 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:24:00.144 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:24:00.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:24:00.144 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:00.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:24:00.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:24:00.144 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:00.144 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:00.144 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:24:00.154 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:00.154 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:24:00.334 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:24:00.334 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:24:00.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28307 150' command took 2 ms to send, 1342 ms to get response, and 1354 ms overall
17-03-18 04:24:00.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:24:00.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128784039401834. ------
17-03-18 04:24:00.334 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:00.334 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13543 mm
17-03-18 04:24:00.334 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:24:00.334 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:24:00.344 -07 000000625 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:24:00.344 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:00.344 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:24:00.454 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:00.454 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29586, sync = True, waitForSettling = False)
17-03-18 04:24:00.454 -07 000000626 INF: Z Motor: Moving to -0.135436 mm, started at -0.128784 mm, distance = -6.65 um
17-03-18 04:24:00.464 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:24:00.464 -07 000000012 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:24:00.464 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 121 ms overall
17-03-18 04:24:00.464 -07 000000625 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:00.464 -07 000000625 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:24:00.464 -07 000000625 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:24:00.474 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:24:00.484 -07 000000626 INF: FPGA: Xmit ZDACW 29586\n [Z Motor]
17-03-18 04:24:00.484 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:24:00.494 -07 000000626 INF: FPGA: 'ZDACW 29586' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:24:00.494 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:00.494 -07 000000467 INF: FPGA: Recv ZDACR 29586
17-03-18 04:24:00.504 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:00.504 -07 000000626 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:24:00.534 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:24:00.534 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:24:00.534 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:00.534 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:24:00.544 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:24:00.544 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:00.544 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:00.544 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:00.544 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:24:00.554 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:24:00.664 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:24:00.664 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:24:00.844 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:24:00.844 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:24:00.894 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:00.904 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:24:00.904 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:24:00.904 -07 000000625 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:00.904 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:24:00.904 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 04:24:01.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:01.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:24:01.854 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:01.854 -07 000000474 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:24:01.864 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:01.864 -07 000000625 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:01.904 -07 000000625 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:24:01.904 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:24:01.904 -07 000000625 INF: Y Motor: Moved to 71.5186 after 1562 ms (table move)
17-03-18 04:24:01.914 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135436 mm (DAC = 29586)
17-03-18 04:24:01.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.914 -07 000000467 INF: FPGA: Recv ZSGSRD 30378
17-03-18 04:24:01.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.924 -07 000000444 INF: FPGA: Recv ZSGSRD 30375
17-03-18 04:24:01.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.934 -07 000000585 INF: FPGA: Recv ZSGSRD 30375
17-03-18 04:24:01.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.944 -07 000000467 INF: FPGA: Recv ZSGSRD 30369
17-03-18 04:24:01.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.954 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.954 -07 000000444 INF: FPGA: Recv ZSGSRD 30370
17-03-18 04:24:01.964 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.964 -07 000000585 INF: FPGA: Recv ZSGSRD 30367
17-03-18 04:24:01.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.974 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.974 -07 000000585 INF: FPGA: Recv ZSGSRD 30374
17-03-18 04:24:01.984 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.984 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.984 -07 000000585 INF: FPGA: Recv ZSGSRD 30376
17-03-18 04:24:01.994 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:01.994 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:01.994 -07 000000585 INF: FPGA: Recv ZSGSRD 30373
17-03-18 04:24:02.004 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.004 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:02.004 -07 000000585 INF: FPGA: Recv ZSGSRD 30375
17-03-18 04:24:02.014 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.014 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:02.014 -07 000000585 INF: FPGA: Recv ZPIEZORD 26156
17-03-18 04:24:02.024 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.024 -07 000000487 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.515 V. Piezo Error = -9.3 V.
17-03-18 04:24:02.024 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30373 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30374 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30367 (-134.6 uncal um), Max = 30378 (-134.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:24:02.024 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30373, posNoise = 5, negNoise = 6
17-03-18 04:24:02.024 -07 000000487 INF: Z Motor: After move to -0.135436, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:02.024 -07 000000487 INF: Z Motor: Settle wait time = 1450 ms, measure time = 111 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:24:02.024 -07 000000487 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 04:24:02.064 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-18 04:24:02.064 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:24:02.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:02.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:02.064 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:02.064 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:02.064 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:24:02.064 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:02.064 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:24:02.064 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:24:02.074 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:24:02.074 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:24:02.074 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:24:02.074 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:24:02.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:24:02.124 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:24:02.424 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:24:02.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:24:02.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:24:02.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:24:02.464 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:24:02.464 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:24:02.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:24:02.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:24:02.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:02.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:24:02.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:24:02.564 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:02.564 -07 000000424 INF: Autofocus start
17-03-18 04:24:02.564 -07 000000424 INF: MeasureProfile start
17-03-18 04:24:02.564 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:02.574 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:24:02.574 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:24:02.574 -07 000000424 INF: MeasureProfile done
17-03-18 04:24:02.574 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:24:02.574 -07 000000424 INF: Autofocus finished
17-03-18 04:24:02.774 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:24:02.774 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:24:02.774 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135445947392841. ----------
17-03-18 04:24:02.774 -07 000000610 INF: Cycle	124	Tile	15	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:24:02.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28110, sync = True, waitForSettling = True)
17-03-18 04:24:02.784 -07 000000610 INF: Z Motor: Moving to -0.128679 mm, started at -0.135446 mm, distance = 6.77 um
17-03-18 04:24:02.784 -07 000000610 INF: FPGA: Xmit ZDACW 28110\n [Z Motor]
17-03-18 04:24:02.784 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:24:02.794 -07 000000610 INF: FPGA: 'ZDACW 28110' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:24:02.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:02.794 -07 000000444 INF: FPGA: Recv ZDACR 28110
17-03-18 04:24:02.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:24:02.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:02.954 -07 000000585 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:24:02.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:02.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:02.964 -07 000000424 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:24:02.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:02.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:24:02.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:02.984 -07 000000444 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:24:02.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:02.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:02.994 -07 000000585 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:24:03.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:03.004 -07 000000424 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:24:03.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:03.014 -07 000000474 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:24:03.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:03.024 -07 000000424 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:24:03.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:03.034 -07 000000585 INF: FPGA: Recv ZSGSRD 29325
17-03-18 04:24:03.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:03.044 -07 000000444 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:24:03.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:03.054 -07 000000585 INF: FPGA: Recv ZPIEZORD 24769
17-03-18 04:24:03.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:03.064 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -10.0 V.
17-03-18 04:24:03.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29321 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29317 (-127.9 uncal um), Max = 29325 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:24:03.064 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29321, posNoise = 4, negNoise = 4
17-03-18 04:24:03.064 -07 000000610 INF: Z Motor: After move to -0.128679, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:03.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:24:03.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:03.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:03.064 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:03.064 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:03.064 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:24:03.064 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:03.064 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:24:03.064 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:24:03.064 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:24:03.064 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:24:03.064 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:24:03.064 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:24:03.074 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:24:03.074 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:24:03.074 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:24:03.074 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:24:03.084 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:24:03.084 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:24:03.084 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:24:03.084 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:24:03.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28287 150\n [Camera]
17-03-18 04:24:03.284 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:24:03.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:24:03.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:24:03.704 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:03.704 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:24:03.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:24:03.704 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:03.704 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:03.704 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:24:03.714 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:03.714 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:24:03.894 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28287 804
17-03-18 04:24:04.044 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:24:04.094 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:24:04.094 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:24:04.094 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:04.094 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:24:04.094 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:24:04.094 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:24:04.094 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:04.104 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:24:04.104 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:24:04.104 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:24:04.244 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:24:04.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:24:04.244 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:04.254 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:04.254 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:24:04.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:24:04.254 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:24:04.254 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:04.254 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:04.254 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:24:04.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:24:04.434 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:24:04.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28287 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-18 04:24:04.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:24:04.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128687676219708. ------
17-03-18 04:24:04.444 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:04.444 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13497 mm
17-03-18 04:24:04.444 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:24:04.444 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:24:04.444 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:24:04.444 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29484, sync = True, waitForSettling = False)
17-03-18 04:24:04.444 -07 000000424 INF: Z Motor: Moving to -0.134969 mm, started at -0.128688 mm, distance = -6.28 um
17-03-18 04:24:04.454 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:04.454 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:24:04.454 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:04.454 -07 000000479 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:24:04.464 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:04.464 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:04.464 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:24:04.464 -07 000000561 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:24:04.464 -07 000000424 INF: FPGA: Xmit ZDACW 29484\n [Z Motor]
17-03-18 04:24:04.464 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:24:04.474 -07 000000424 INF: FPGA: 'ZDACW 29484' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:24:04.474 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:24:04.484 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:24:04.494 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:04.494 -07 000000444 INF: FPGA: Recv ZDACR 29484
17-03-18 04:24:04.504 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:24:04.504 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:24:04.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:24:04.654 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:24:04.654 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:04.654 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:24:04.654 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:24:04.654 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:04.654 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:04.654 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:04.664 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:24:04.664 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:24:04.674 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:24:04.674 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:24:04.854 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:24:04.854 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:24:04.884 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.027603,
17-03-18 04:24:04.924 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:04.924 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:24:04.934 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:24:04.934 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:04.934 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:24:04.934 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:24:05.884 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:05.884 -07 000000625 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:24:05.894 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:05.894 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:05.924 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:24:05.924 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:24:05.924 -07 000000561 INF: Y Motor: Moved to 72.3491 after 1472 ms (table move)
17-03-18 04:24:05.924 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134969 mm (DAC = 29484)
17-03-18 04:24:05.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.934 -07 000000561 INF: FPGA: Recv ZSGSRD 30301
17-03-18 04:24:05.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:24:05.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.934 -07 000000487 INF: FPGA: Recv ZSGSRD 30297
17-03-18 04:24:05.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:24:05.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.944 -07 000000561 INF: FPGA: Recv ZSGSRD 30298
17-03-18 04:24:05.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:05.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.954 -07 000000487 INF: FPGA: Recv ZSGSRD 30298
17-03-18 04:24:05.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:05.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.964 -07 000000561 INF: FPGA: Recv ZSGSRD 30298
17-03-18 04:24:05.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:05.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30300
17-03-18 04:24:05.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:05.984 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.984 -07 000000561 INF: FPGA: Recv ZSGSRD 30300
17-03-18 04:24:05.994 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:05.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:05.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30298
17-03-18 04:24:06.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:06.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:06.004 -07 000000561 INF: FPGA: Recv ZSGSRD 30302
17-03-18 04:24:06.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:06.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:06.014 -07 000000467 INF: FPGA: Recv ZSGSRD 30302
17-03-18 04:24:06.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:06.024 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:06.024 -07 000000467 INF: FPGA: Recv ZPIEZORD 26044
17-03-18 04:24:06.034 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:06.034 -07 000000474 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.4 V.
17-03-18 04:24:06.034 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30299 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30299 (-134.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30297 (-134.2 uncal um), Max = 30302 (-134.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:24:06.034 -07 000000474 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30299, posNoise = 3, negNoise = 2
17-03-18 04:24:06.034 -07 000000474 INF: Z Motor: After move to -0.134969, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:06.034 -07 000000474 INF: Z Motor: Settle wait time = 1477 ms, measure time = 103 ms (allowed 150 ms), total time = 1580 ms
17-03-18 04:24:06.034 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:24:06.084 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 04:24:06.084 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:24:06.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:06.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:06.084 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:06.084 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:06.084 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:24:06.084 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:06.084 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:06.084 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:24:06.094 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:24:06.094 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:24:06.094 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:24:06.094 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:24:06.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:24:06.144 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:24:06.444 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:24:06.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:24:06.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:24:06.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-18 04:24:06.484 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:24:06.484 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:24:06.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:24:06.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:24:06.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:06.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:24:06.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:24:06.584 -07 000000467 INF: Autofocus start
17-03-18 04:24:06.584 -07 000000467 INF: MeasureProfile start
17-03-18 04:24:06.584 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:06.584 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:06.594 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:24:06.594 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:24:06.604 -07 000000467 INF: MeasureProfile done
17-03-18 04:24:06.604 -07 000000467 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:24:06.604 -07 000000467 INF: Autofocus finished
17-03-18 04:24:06.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:06.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:24:06.794 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:24:06.794 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:24:06.794 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.13497055569435. ----------
17-03-18 04:24:06.804 -07 000000610 INF: Cycle	124	Tile	16	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:24:06.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28025, sync = True, waitForSettling = True)
17-03-18 04:24:06.804 -07 000000610 INF: Z Motor: Moving to -0.128290 mm, started at -0.134971 mm, distance = 6.68 um
17-03-18 04:24:06.804 -07 000000610 INF: FPGA: Xmit ZDACW 28025\n [Z Motor]
17-03-18 04:24:06.804 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:24:06.814 -07 000000610 INF: FPGA: 'ZDACW 28025' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:24:06.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:06.814 -07 000000625 INF: FPGA: Recv ZDACR 28025
17-03-18 04:24:06.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:06.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:24:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:06.974 -07 000000467 INF: FPGA: Recv ZSGSRD 29259
17-03-18 04:24:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:06.984 -07 000000467 INF: FPGA: Recv ZSGSRD 29263
17-03-18 04:24:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:06.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:06.994 -07 000000424 INF: FPGA: Recv ZSGSRD 29261
17-03-18 04:24:07.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.004 -07 000000424 INF: FPGA: Recv ZSGSRD 29255
17-03-18 04:24:07.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.014 -07 000000501 INF: FPGA: Recv ZSGSRD 29264
17-03-18 04:24:07.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.024 -07 000000561 INF: FPGA: Recv ZSGSRD 29259
17-03-18 04:24:07.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.034 -07 000000424 INF: FPGA: Recv ZSGSRD 29261
17-03-18 04:24:07.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.044 -07 000000561 INF: FPGA: Recv ZSGSRD 29261
17-03-18 04:24:07.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.054 -07 000000561 INF: FPGA: Recv ZSGSRD 29257
17-03-18 04:24:07.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:07.064 -07 000000561 INF: FPGA: Recv ZSGSRD 29266
17-03-18 04:24:07.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:07.074 -07 000000561 INF: FPGA: Recv ZPIEZORD 24699
17-03-18 04:24:07.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:07.084 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -10.0 V.
17-03-18 04:24:07.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29261 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29261 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29255 (-127.5 uncal um), Max = 29266 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:24:07.084 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29261, posNoise = 5, negNoise = 6
17-03-18 04:24:07.084 -07 000000610 INF: Z Motor: After move to -0.128290, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:07.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:24:07.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:07.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:07.084 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:07.084 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:24:07.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:07.084 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:07.084 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:24:07.084 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:24:07.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:07.084 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:24:07.084 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:24:07.084 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:24:07.094 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:24:07.094 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:24:07.094 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:24:07.094 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:24:07.104 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:24:07.104 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:24:07.104 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:24:07.104 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:24:07.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28202 150\n [Camera]
17-03-18 04:24:07.304 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:24:07.734 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:24:07.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:24:07.734 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:07.734 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:07.734 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:24:07.734 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:24:07.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:24:07.734 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:07.734 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:07.734 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:24:07.924 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28202 804
17-03-18 04:24:08.074 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 955
17-03-18 04:24:08.124 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:24:08.124 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:24:08.124 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:08.124 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:24:08.124 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:24:08.124 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:08.134 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:08.134 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:08.134 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:24:08.134 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:24:08.274 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:24:08.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:24:08.274 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:08.274 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:08.274 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:24:08.274 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:24:08.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:24:08.274 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:08.274 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:08.274 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:24:08.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:24:08.464 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:24:08.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28202 150' command took 2 ms to send, 1345 ms to get response, and 1355 ms overall
17-03-18 04:24:08.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:24:08.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128302223491202. ------
17-03-18 04:24:08.714 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 443 ms.
17-03-18 04:24:08.714 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 443 ms.
17-03-18 04:24:08.714 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:08.714 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13490 mm
17-03-18 04:24:08.714 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:24:08.714 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:08.714 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 440 ms.
17-03-18 04:24:08.714 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 442 ms.
17-03-18 04:24:08.714 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:08.724 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:08.724 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:24:08.724 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:08.724 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:24:08.724 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:24:08.724 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29468, sync = True, waitForSettling = False)
17-03-18 04:24:08.724 -07 000000625 INF: Z Motor: Moving to -0.134896 mm, started at -0.128302 mm, distance = -6.59 um
17-03-18 04:24:08.724 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:24:08.724 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:24:08.724 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 452 ms.
17-03-18 04:24:08.734 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:08.734 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 453 ms.
17-03-18 04:24:08.734 -07 000000487 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:24:08.744 -07 000000625 INF: FPGA: Xmit ZDACW 29468\n [Z Motor]
17-03-18 04:24:08.744 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:24:08.744 -07 000000626 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:08.744 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:24:08.744 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:24:08.744 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:24:08.754 -07 000000625 INF: FPGA: 'ZDACW 29468' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:24:08.754 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:08.754 -07 000000467 INF: FPGA: Recv ZDACR 29468
17-03-18 04:24:08.764 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:24:08.764 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:08.764 -07 000000625 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:24:08.924 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:24:08.924 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 198 ms to get response, and 204 ms overall
17-03-18 04:24:09.134 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:24:09.134 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:24:09.184 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:09.184 -07 000000474 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:24:09.194 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:24:09.194 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:09.194 -07 000000626 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:24:09.194 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 04:24:10.144 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:10.144 -07 000000438 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:24:10.154 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:10.154 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:10.184 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:24:10.184 -07 000000626 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:24:10.184 -07 000000626 INF: Y Motor: Moved to 73.1758 after 1458 ms (table move)
17-03-18 04:24:10.184 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134896 mm (DAC = 29468)
17-03-18 04:24:10.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.184 -07 000000626 INF: FPGA: Recv ZSGSRD 30289
17-03-18 04:24:10.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:24:10.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.194 -07 000000626 INF: FPGA: Recv ZSGSRD 30286
17-03-18 04:24:10.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30286
17-03-18 04:24:10.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.214 -07 000000561 INF: FPGA: Recv ZSGSRD 30286
17-03-18 04:24:10.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.224 -07 000000626 INF: FPGA: Recv ZSGSRD 30295
17-03-18 04:24:10.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.244 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.024884,
17-03-18 04:24:10.244 -07 000000438 INF: FPGA: Recv ZSGSRD 30284
17-03-18 04:24:10.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:24:10.274 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.274 -07 000000012 INF: FPGA: Recv ZSGSRD 30292
17-03-18 04:24:10.284 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:24:10.304 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.304 -07 000000438 INF: FPGA: Recv ZSGSRD 30290
17-03-18 04:24:10.314 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:24:10.314 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.314 -07 000000474 INF: FPGA: Recv ZSGSRD 30294
17-03-18 04:24:10.324 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.324 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:10.324 -07 000000585 INF: FPGA: Recv ZSGSRD 30285
17-03-18 04:24:10.334 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.334 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:10.334 -07 000000626 INF: FPGA: Recv ZPIEZORD 26042
17-03-18 04:24:10.344 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:10.344 -07 000000501 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.3 V.
17-03-18 04:24:10.344 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30289 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30288 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30284 (-134.1 uncal um), Max = 30295 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:24:10.344 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30289, posNoise = 6, negNoise = 5
17-03-18 04:24:10.344 -07 000000501 INF: Z Motor: After move to -0.134896, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:10.344 -07 000000501 INF: Z Motor: Settle wait time = 1461 ms, measure time = 155 ms (allowed 150 ms), total time = 1616 ms
17-03-18 04:24:10.344 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 04:24:10.344 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:24:10.344 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:24:10.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:10.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:10.344 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:10.344 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:10.344 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:24:10.344 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:10.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:10.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:24:10.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:24:10.354 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:24:10.364 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:24:10.364 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:24:10.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:24:10.414 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:24:10.714 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:24:10.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:24:10.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:24:10.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:24:10.754 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:24:10.754 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:24:10.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 04:24:10.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:24:10.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:10.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:24:10.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:24:10.854 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:10.854 -07 000000585 INF: Autofocus start
17-03-18 04:24:10.854 -07 000000585 INF: MeasureProfile start
17-03-18 04:24:10.854 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:10.864 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:24:10.864 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:24:10.874 -07 000000585 INF: MeasureProfile done
17-03-18 04:24:10.874 -07 000000585 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:24:10.874 -07 000000585 INF: Autofocus finished
17-03-18 04:24:11.064 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:24:11.064 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:24:11.064 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134906313572933. ----------
17-03-18 04:24:11.064 -07 000000610 INF: Cycle	124	Tile	17	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:24:11.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27963, sync = True, waitForSettling = True)
17-03-18 04:24:11.074 -07 000000610 INF: Z Motor: Moving to -0.128006 mm, started at -0.134906 mm, distance = 6.90 um
17-03-18 04:24:11.074 -07 000000610 INF: FPGA: Xmit ZDACW 27963\n [Z Motor]
17-03-18 04:24:11.074 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:24:11.084 -07 000000610 INF: FPGA: 'ZDACW 27963' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:11.084 -07 000000474 INF: FPGA: Recv ZDACR 27963
17-03-18 04:24:11.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:24:11.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.244 -07 000000424 INF: FPGA: Recv ZSGSRD 29215
17-03-18 04:24:11.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:11.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.254 -07 000000626 INF: FPGA: Recv ZSGSRD 29217
17-03-18 04:24:11.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29212
17-03-18 04:24:11.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.274 -07 000000424 INF: FPGA: Recv ZSGSRD 29216
17-03-18 04:24:11.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.284 -07 000000012 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:24:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.294 -07 000000474 INF: FPGA: Recv ZSGSRD 29214
17-03-18 04:24:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.304 -07 000000012 INF: FPGA: Recv ZSGSRD 29214
17-03-18 04:24:11.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.314 -07 000000625 INF: FPGA: Recv ZSGSRD 29218
17-03-18 04:24:11.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.324 -07 000000438 INF: FPGA: Recv ZSGSRD 29216
17-03-18 04:24:11.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:11.334 -07 000000501 INF: FPGA: Recv ZSGSRD 29210
17-03-18 04:24:11.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:11.344 -07 000000424 INF: FPGA: Recv ZPIEZORD 24631
17-03-18 04:24:11.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:11.354 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -10.1 V.
17-03-18 04:24:11.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29214 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29214 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29210 (-127.2 uncal um), Max = 29218 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:24:11.354 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29214, posNoise = 4, negNoise = 4
17-03-18 04:24:11.354 -07 000000610 INF: Z Motor: After move to -0.128006, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:11.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:24:11.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:11.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:11.354 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:11.354 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:24:11.354 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:24:11.354 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:24:11.354 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:11.354 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:24:11.354 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:24:11.354 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:11.354 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:11.354 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:24:11.354 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:24:11.354 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:24:11.364 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:24:11.364 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:24:11.364 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:24:11.364 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:24:11.374 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:24:11.374 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:24:11.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28140 150\n [Camera]
17-03-18 04:24:11.574 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:24:11.664 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:11.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:24:11.994 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:24:11.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:24:11.994 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:11.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:24:11.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:24:11.994 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:11.994 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:11.994 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:24:12.004 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:12.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:24:12.184 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28140 804
17-03-18 04:24:12.334 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:24:12.374 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 04:24:12.374 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 04:24:12.374 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:12.374 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:24:12.374 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:24:12.374 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:12.374 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:24:12.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:24:12.374 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:24:12.384 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:24:12.534 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:24:12.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:24:12.534 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:12.544 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:24:12.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:24:12.544 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:12.544 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:12.544 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:24:12.544 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:12.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:24:12.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:24:12.724 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:24:12.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28140 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-18 04:24:12.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:24:12.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.12800028552054. ------
17-03-18 04:24:12.854 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:12.854 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13388 mm
17-03-18 04:24:12.854 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:24:12.854 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:24:12.854 -07 000000474 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:24:12.854 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:12.854 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29247, sync = True, waitForSettling = False)
17-03-18 04:24:12.854 -07 000000625 INF: Z Motor: Moving to -0.133884 mm, started at -0.128000 mm, distance = -5.88 um
17-03-18 04:24:12.864 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:24:12.864 -07 000000625 INF: FPGA: Xmit ZDACW 29247\n [Z Motor]
17-03-18 04:24:12.864 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:24:12.874 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:12.874 -07 000000625 INF: FPGA: 'ZDACW 29247' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:12.874 -07 000000461 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:24:12.884 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:24:12.884 -07 000000474 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:12.884 -07 000000474 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:24:12.884 -07 000000474 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:24:12.884 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:24:12.894 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:12.894 -07 000000561 INF: FPGA: Recv ZDACR 29247
17-03-18 04:24:12.904 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:24:12.904 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:24:12.904 -07 000000625 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:24:12.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:24:12.944 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:24:12.944 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:12.944 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:24:12.944 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:24:12.944 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:12.944 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:12.944 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:12.944 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:24:12.954 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:24:13.084 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:24:13.084 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:24:13.274 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:24:13.274 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:24:13.314 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:13.324 -07 000000479 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:24:13.324 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:24:13.324 -07 000000474 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:13.324 -07 000000474 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:24:13.324 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-18 04:24:14.274 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:14.274 -07 000000626 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:24:14.284 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:14.284 -07 000000474 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:14.304 -07 000000474 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:24:14.304 -07 000000474 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:24:14.304 -07 000000474 INF: Y Motor: Moved to 74.0078 after 1445 ms (table move)
17-03-18 04:24:14.304 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133884 mm (DAC = 29247)
17-03-18 04:24:14.304 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.314 -07 000000444 INF: FPGA: Recv ZSGSRD 30135
17-03-18 04:24:14.314 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:24:14.314 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.314 -07 000000444 INF: FPGA: Recv ZSGSRD 30127
17-03-18 04:24:14.324 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.324 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.324 -07 000000444 INF: FPGA: Recv ZSGSRD 30130
17-03-18 04:24:14.334 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.334 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.334 -07 000000444 INF: FPGA: Recv ZSGSRD 30127
17-03-18 04:24:14.344 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.344 -07 000000444 INF: FPGA: Recv ZSGSRD 30130
17-03-18 04:24:14.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.354 -07 000000444 INF: FPGA: Recv ZSGSRD 30134
17-03-18 04:24:14.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.364 -07 000000438 INF: FPGA: Recv ZSGSRD 30131
17-03-18 04:24:14.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.374 -07 000000438 INF: FPGA: Recv ZSGSRD 30127
17-03-18 04:24:14.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.384 -07 000000438 INF: FPGA: Recv ZSGSRD 30131
17-03-18 04:24:14.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:14.394 -07 000000438 INF: FPGA: Recv ZSGSRD 30127
17-03-18 04:24:14.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.404 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:14.404 -07 000000438 INF: FPGA: Recv ZPIEZORD 25870
17-03-18 04:24:14.414 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:14.414 -07 000000501 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.463 V. Piezo Error = -9.4 V.
17-03-18 04:24:14.414 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30130 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30130 (-133.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30127 (-133.1 uncal um), Max = 30135 (-133.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:24:14.414 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30130, posNoise = 5, negNoise = 3
17-03-18 04:24:14.414 -07 000000501 INF: Z Motor: After move to -0.133884, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:14.414 -07 000000501 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-18 04:24:14.414 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:24:14.464 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 04:24:14.464 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:24:14.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:14.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:14.464 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:14.464 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:24:14.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:14.464 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:14.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:14.464 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:24:14.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:24:14.474 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:24:14.474 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:24:14.474 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:24:14.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:24:14.524 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:24:14.824 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:24:14.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:24:14.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:24:14.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:24:14.864 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:24:14.864 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 04:24:14.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:24:14.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:24:14.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:14.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:24:14.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:24:14.964 -07 000000424 INF: Autofocus start
17-03-18 04:24:14.964 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:14.964 -07 000000424 INF: MeasureProfile start
17-03-18 04:24:14.964 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:14.974 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:24:14.974 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:24:14.974 -07 000000424 INF: MeasureProfile done
17-03-18 04:24:14.974 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:24:14.974 -07 000000424 INF: Autofocus finished
17-03-18 04:24:15.174 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:24:15.174 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:24:15.174 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133884863842393. ----------
17-03-18 04:24:15.184 -07 000000610 INF: Cycle	124	Tile	18	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:24:15.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27754, sync = True, waitForSettling = True)
17-03-18 04:24:15.184 -07 000000610 INF: Z Motor: Moving to -0.127050 mm, started at -0.133885 mm, distance = 6.84 um
17-03-18 04:24:15.184 -07 000000610 INF: FPGA: Xmit ZDACW 27754\n [Z Motor]
17-03-18 04:24:15.184 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:24:15.194 -07 000000610 INF: FPGA: 'ZDACW 27754' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:24:15.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:15.194 -07 000000561 INF: FPGA: Recv ZDACR 27754
17-03-18 04:24:15.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:24:15.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.354 -07 000000585 INF: FPGA: Recv ZSGSRD 29067
17-03-18 04:24:15.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:15.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.364 -07 000000424 INF: FPGA: Recv ZSGSRD 29065
17-03-18 04:24:15.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.374 -07 000000438 INF: FPGA: Recv ZSGSRD 29067
17-03-18 04:24:15.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29065
17-03-18 04:24:15.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.394 -07 000000438 INF: FPGA: Recv ZSGSRD 29076
17-03-18 04:24:15.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.404 -07 000000561 INF: FPGA: Recv ZSGSRD 29072
17-03-18 04:24:15.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.414 -07 000000585 INF: FPGA: Recv ZSGSRD 29063
17-03-18 04:24:15.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.424 -07 000000474 INF: FPGA: Recv ZSGSRD 29068
17-03-18 04:24:15.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.434 -07 000000585 INF: FPGA: Recv ZSGSRD 29068
17-03-18 04:24:15.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:15.444 -07 000000626 INF: FPGA: Recv ZSGSRD 29068
17-03-18 04:24:15.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:15.454 -07 000000438 INF: FPGA: Recv ZPIEZORD 24481
17-03-18 04:24:15.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:15.464 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.235 V. Piezo Error = -10.1 V.
17-03-18 04:24:15.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29068 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29068 (-126.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29063 (-126.3 uncal um), Max = 29076 (-126.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:24:15.464 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29068, posNoise = 8, negNoise = 5
17-03-18 04:24:15.464 -07 000000610 INF: Z Motor: After move to -0.127050, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:15.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:24:15.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:15.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:15.464 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:24:15.464 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:24:15.464 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:15.464 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:15.464 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:24:15.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:15.464 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:24:15.464 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:24:15.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:15.464 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:24:15.474 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:24:15.474 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:24:15.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:24:15.474 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:24:15.484 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:24:15.484 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:24:15.484 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:24:15.484 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:24:15.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 27931 150\n [Camera]
17-03-18 04:24:15.624 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.039839,
17-03-18 04:24:15.684 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:24:16.104 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:24:16.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:24:16.104 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:16.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:24:16.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:24:16.104 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:16.104 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:16.104 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:24:16.114 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:16.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:24:16.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27931 804
17-03-18 04:24:16.444 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:24:16.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:24:16.494 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:24:16.494 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:16.504 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:24:16.504 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:24:16.504 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:24:16.504 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:24:16.504 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:16.504 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:24:16.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:24:16.644 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:24:16.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:24:16.644 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:16.644 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:16.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:24:16.644 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:24:16.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:24:16.644 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:16.644 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:16.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 04:24:16.664 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 123. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:24:16.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-18 04:24:16.834 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:24:16.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 27931 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-18 04:24:16.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:24:16.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.127062350547843. ------
17-03-18 04:24:16.844 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:16.844 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13342 mm
17-03-18 04:24:16.844 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:24:16.844 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:16.844 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:24:16.844 -07 000000461 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:24:16.844 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29146, sync = True, waitForSettling = False)
17-03-18 04:24:16.844 -07 000000438 INF: Z Motor: Moving to -0.133422 mm, started at -0.127062 mm, distance = -6.36 um
17-03-18 04:24:16.854 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:24:16.854 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:16.854 -07 000000474 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:24:16.864 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:24:16.864 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:16.864 -07 000000461 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:16.864 -07 000000461 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:24:16.864 -07 000000461 INF: Y Motor: Moving 1352 steps-30
17-03-18 04:24:16.874 -07 000000438 INF: FPGA: Xmit ZDACW 29146\n [Z Motor]
17-03-18 04:24:16.874 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:24:16.884 -07 000000438 INF: FPGA: 'ZDACW 29146' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:24:16.884 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:24:16.894 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:16.894 -07 000000474 INF: FPGA: Recv ZDACR 29146
17-03-18 04:24:16.904 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:24:16.904 -07 000000438 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:24:17.044 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:24:17.044 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:24:17.044 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:17.054 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:24:17.054 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:24:17.054 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:17.054 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:24:17.054 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:24:17.054 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:24:17.064 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:24:17.064 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:24:17.064 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:24:17.254 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:24:17.254 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:24:17.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:17.294 -07 000000424 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:24:17.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:24:17.294 -07 000000461 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:17.294 -07 000000461 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:24:17.294 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:24:18.244 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:18.244 -07 000000479 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:24:18.254 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:18.254 -07 000000461 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:18.264 -07 000000461 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:24:18.264 -07 000000461 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:24:18.274 -07 000000461 INF: Y Motor: Moved to 74.8315 after 1420 ms (table move)
17-03-18 04:24:18.274 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133422 mm (DAC = 29146)
17-03-18 04:24:18.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.274 -07 000000461 INF: FPGA: Recv ZSGSRD 30058
17-03-18 04:24:18.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:24:18.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.284 -07 000000461 INF: FPGA: Recv ZSGSRD 30050
17-03-18 04:24:18.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.294 -07 000000474 INF: FPGA: Recv ZSGSRD 30052
17-03-18 04:24:18.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.304 -07 000000461 INF: FPGA: Recv ZSGSRD 30052
17-03-18 04:24:18.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30061
17-03-18 04:24:18.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.324 -07 000000461 INF: FPGA: Recv ZSGSRD 30062
17-03-18 04:24:18.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.334 -07 000000461 INF: FPGA: Recv ZSGSRD 30063
17-03-18 04:24:18.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.344 -07 000000012 INF: FPGA: Recv ZSGSRD 30062
17-03-18 04:24:18.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.354 -07 000000012 INF: FPGA: Recv ZSGSRD 30054
17-03-18 04:24:18.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:18.364 -07 000000461 INF: FPGA: Recv ZSGSRD 30051
17-03-18 04:24:18.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.374 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:18.374 -07 000000012 INF: FPGA: Recv ZPIEZORD 25814
17-03-18 04:24:18.384 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:18.384 -07 000000626 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.447 V. Piezo Error = -9.3 V.
17-03-18 04:24:18.384 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30056 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30056 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30050 (-132.6 uncal um), Max = 30063 (-132.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:24:18.384 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30056, posNoise = 7, negNoise = 6
17-03-18 04:24:18.384 -07 000000626 INF: Z Motor: After move to -0.133422, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:18.384 -07 000000626 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-18 04:24:18.384 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:24:18.434 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 04:24:18.434 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:24:18.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:18.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:18.434 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:18.434 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:24:18.434 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:18.434 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:18.444 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:24:18.444 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:24:18.444 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:24:18.444 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:24:18.454 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:24:18.454 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:24:18.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:24:18.504 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:24:18.804 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:24:18.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:24:18.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:24:18.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 04:24:18.844 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:24:18.844 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:24:18.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:24:18.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:24:18.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:18.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:24:18.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:24:18.944 -07 000000438 INF: Autofocus start
17-03-18 04:24:18.944 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:24:18.944 -07 000000438 INF: MeasureProfile start
17-03-18 04:24:18.944 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:24:18.954 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:24:18.954 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:24:18.954 -07 000000438 INF: MeasureProfile done
17-03-18 04:24:18.954 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:24:18.954 -07 000000438 INF: Autofocus finished
17-03-18 04:24:19.154 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:24:19.154 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:24:19.154 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133409472143902. ----------
17-03-18 04:24:19.154 -07 000000610 INF: Cycle	124	Tile	19	Exposure Settings		A	419	G	201	T	201	C	419
17-03-18 04:24:19.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27654, sync = True, waitForSettling = True)
17-03-18 04:24:19.164 -07 000000610 INF: Z Motor: Moving to -0.126592 mm, started at -0.133409 mm, distance = 6.82 um
17-03-18 04:24:19.164 -07 000000610 INF: FPGA: Xmit ZDACW 27654\n [Z Motor]
17-03-18 04:24:19.164 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:24:19.174 -07 000000610 INF: FPGA: 'ZDACW 27654' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:24:19.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:24:19.174 -07 000000012 INF: FPGA: Recv ZDACR 27654
17-03-18 04:24:19.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:24:19.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.334 -07 000000479 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:24:19.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:19.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.344 -07 000000479 INF: FPGA: Recv ZSGSRD 28986
17-03-18 04:24:19.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.354 -07 000000479 INF: FPGA: Recv ZSGSRD 29000
17-03-18 04:24:19.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.364 -07 000000479 INF: FPGA: Recv ZSGSRD 28995
17-03-18 04:24:19.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.374 -07 000000479 INF: FPGA: Recv ZSGSRD 28998
17-03-18 04:24:19.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.384 -07 000000479 INF: FPGA: Recv ZSGSRD 29001
17-03-18 04:24:19.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.394 -07 000000479 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:24:19.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.404 -07 000000479 INF: FPGA: Recv ZSGSRD 29002
17-03-18 04:24:19.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.414 -07 000000479 INF: FPGA: Recv ZSGSRD 28995
17-03-18 04:24:19.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:24:19.424 -07 000000479 INF: FPGA: Recv ZSGSRD 28990
17-03-18 04:24:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:24:19.434 -07 000000585 INF: FPGA: Recv ZPIEZORD 24421
17-03-18 04:24:19.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:19.444 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.220 V. Piezo Error = -10.0 V.
17-03-18 04:24:19.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28994 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28995 (-125.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 28986 (-125.8 uncal um), Max = 29002 (-125.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:24:19.444 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28994, posNoise = 8, negNoise = 8
17-03-18 04:24:19.444 -07 000000610 INF: Z Motor: After move to -0.126592, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:24:19.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:24:19.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:24:19.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:24:19.444 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:24:19.444 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:24:19.444 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:24:19.444 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:24:19.444 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:24:19.444 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:24:19.444 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:24:19.444 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:24:19.444 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:24:19.444 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:24:19.454 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:24:19.454 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:24:19.454 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:24:19.454 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:24:19.464 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:24:19.464 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:24:19.464 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:24:19.464 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:24:19.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 27830 150\n [Camera]
17-03-18 04:24:19.664 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:24:20.084 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:24:20.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:24:20.084 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:20.084 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:20.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:24:20.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:24:20.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:24:20.094 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:20.094 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:20.094 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:24:20.284 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27830 804
17-03-18 04:24:20.424 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-18 04:24:20.464 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:24:20.464 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:24:20.464 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:20.464 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:24:20.464 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:24:20.464 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:20.474 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:20.474 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:24:20.474 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:24:20.484 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:24:20.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-18 04:24:20.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-18 04:24:20.634 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:24:20.634 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:24:20.634 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:24:20.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-18 04:24:20.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-18 04:24:20.634 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:24:20.634 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:24:20.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:24:20.824 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-18 04:24:20.824 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:24:20.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 27830 150' command took 2 ms to send, 1353 ms to get response, and 1358 ms overall
17-03-18 04:24:20.984 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.015368,
17-03-18 04:24:21.034 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:24:21.034 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:24:21.034 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:21.034 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:24:21.034 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:24:21.034 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:24:21.044 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:24:21.044 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:24:21.044 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:24:21.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:24:21.054 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:24:21.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 138 ms.
17-03-18 04:24:21.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:24:21.224 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:24:21.234 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 04:24:21.234 -07 000000610 INF: Imaging Cycle 124: ScanTilesCommand Cycle 124 time end. Duration was 166463 ms.
17-03-18 04:24:21.234 -07 000000610 INF: =================== Cycle #124 ===================
17-03-18 04:24:21.234 -07 000000610 INF: ===================  ===================
17-03-18 04:24:21.234 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:24:21.234 -07 000000012 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 04:24:21.244 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:24:21.244 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 04:24:21.244 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 124, FrontChillerTemperature: 4.015368, FrontChillerHeatSinkTemperature: 0.244281, AmbientTemperature: 18.57586, FlowCellCompartmentTemperature: 22.00563, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.23604, GreenLEDSensorTemperature: 26.81766, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 04:24:21.344 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.