17-03-18 04:24:21.394 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:24:21.404 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:24:21.404 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 04:24:21.404 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:21.404 -07 000000626 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:24:21.414 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:24:21.414 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:21.414 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:24:21.414 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:24:21.414 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:24:21.524 -07 000000487 INF: FPGA: Recv YMVTO 154377 873
17-03-18 04:24:21.524 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-18 04:24:21.524 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 04:24:21.524 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 873 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 04:24:21.524 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.733 mm/sec
17-03-18 04:24:21.664 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:24:24.524 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:24:24.524 -07 000000585 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:24:24.534 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:24:24.534 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:24:24.554 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:24:24.554 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-18 04:24:24.554 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3154 ms
17-03-18 04:24:24.564 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 60° ===================
17-03-18 04:24:24.564 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:24:24.564 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:24:24.564 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:24:24.574 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:24:24.574 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:24:24.574 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-18 04:24:24.584 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:24:24.584 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 60° ===================
17-03-18 04:24:24.584 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:24:24.584 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:24:24.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:24.614 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:24:24.614 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:24:24.614 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:24:24.914 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:24:24.934 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:24:24.934 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:24:24.984 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:25.004 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:24:25.004 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:24:25.104 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:24:25.104 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:24:25.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:25.134 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:24:25.134 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:24:25.134 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:24:25.264 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:24:25.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:26.344 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.985358,
17-03-18 04:24:26.664 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:26.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1740, R2=1808, Total=3548. Warn if over 250 bubbles per interval.
17-03-18 04:24:28.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:28.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:28.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:28.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:29.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:29.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:29.364 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:24:29.364 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:24:29.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:29.524 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:24:29.524 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:24:29.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:29.684 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:24:29.684 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:24:29.684 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:24:29.814 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:24:29.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:30.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:30.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:30.304 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:24:30.304 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:24:31.524 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:24:31.524 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:24:31.524 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:31.544 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:24:31.544 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:24:31.544 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:24:31.664 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 9
17-03-18 04:24:31.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=9, R2=8, Total=17. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1749, R2=1816, Total=3565. Warn if over 250 bubbles per interval.
17-03-18 04:24:31.674 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:24:31.694 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:24:31.694 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:24:31.704 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.98264,
17-03-18 04:24:31.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:31.764 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:24:31.764 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:24:31.864 -07 000000610 INF: =================== Cycle #125, Pumping Reagent CMS (4) ===================
17-03-18 04:24:31.864 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:24:31.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:31.894 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:24:31.894 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:24:31.894 -07 000000610 INF: =================== Cycle #125, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:24:32.024 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:24:32.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:33.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:33.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:33.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:33.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:33.984 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:24:33.984 -07 000000610 INF: =================== Cycle #125, Pumping Reagent CMS (4) ===================
17-03-18 04:24:34.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:34.144 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:24:34.144 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:24:34.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:34.304 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:24:34.304 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:24:34.304 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:24:34.434 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:24:34.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:34.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:34.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:34.924 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:24:34.924 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:24:36.144 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:24:36.144 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:24:36.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:36.164 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:24:36.164 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:24:36.164 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:24:36.314 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:24:36.334 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:24:36.334 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:24:36.384 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:36.404 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:24:36.404 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:24:36.504 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:24:36.504 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:24:36.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:36.534 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:24:36.534 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:24:36.534 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:24:36.664 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:24:36.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-18 04:24:36.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1750, R2=1819, Total=3569. Warn if over 250 bubbles per interval.
17-03-18 04:24:36.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:37.064 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.952638,
17-03-18 04:24:37.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:37.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:37.604 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:24:37.604 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:24:37.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:37.764 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:24:37.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:24:37.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:37.924 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:24:37.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:24:37.924 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:24:38.054 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:24:38.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:38.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:38.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:38.544 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:24:38.544 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:24:38.544 -07 000000444 INF: WaitCommand(10000) start
17-03-18 04:24:38.544 -07 000000625 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:24:38.544 -07 000000625 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:24:39.764 -07 000000625 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:24:39.764 -07 000000625 INF: LanePump: Xmit /1?\r
17-03-18 04:24:39.794 -07 000000625 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:24:39.794 -07 000000625 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:24:39.924 -07 000000625 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:24:39.964 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:41.494 -07 000000625 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:41.524 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:41.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:24:41.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1752, R2=1821, Total=3573. Warn if over 250 bubbles per interval.
17-03-18 04:24:41.944 -07 000000625 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:41.974 -07 000000625 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:41.974 -07 000000625 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:24:41.974 -07 000000625 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:24:41.974 -07 000000625 INF: ===================  ===================
17-03-18 04:24:42.424 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.969015,
17-03-18 04:24:46.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:46.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1752, R2=1821, Total=3573. Warn if over 250 bubbles per interval.
17-03-18 04:24:48.554 -07 000000444 INF: WaitCommand(10000) end
17-03-18 04:24:48.554 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:24:48.554 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:24:48.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:48.594 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:24:48.594 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:24:48.594 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:24:48.654 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.990831,
17-03-18 04:24:48.724 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:24:48.764 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:51.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:24:51.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:24:54.544 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.997626,
17-03-18 04:24:54.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:54.924 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:55.344 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:56.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:56.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:56.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:56.594 -07 000000610 INF: LanePump: Waited 7829 ms for pump motion to complete
17-03-18 04:24:56.594 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:24:56.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:24:56.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:24:56.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:56.754 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:24:56.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:24:56.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:56.914 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:24:56.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:24:56.914 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:24:57.044 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:24:57.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:57.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:24:57.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:24:57.534 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:24:57.534 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:24:58.754 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:24:58.754 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:24:58.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:58.774 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:24:58.774 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:24:58.774 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:24:58.984 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:24:59.004 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:24:59.004 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:24:59.054 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:24:59.074 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:24:59.074 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:24:59.174 -07 000000610 INF: =================== Cycle #125, Pumping Reagent IMT (1) ===================
17-03-18 04:24:59.174 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:24:59.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:24:59.204 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:24:59.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:24:59.204 -07 000000610 INF: =================== Cycle #125, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:24:59.334 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:24:59.374 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:24:59.904 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.007176,
17-03-18 04:25:00.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:00.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:25:01.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:01.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:01.294 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:25:01.294 -07 000000610 INF: =================== Cycle #125, Pumping Reagent IMT (1) ===================
17-03-18 04:25:01.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:01.454 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:25:01.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:25:01.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:01.614 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:25:01.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:25:01.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:25:01.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:25:02.404 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:02.404 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:02.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:02.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:02.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:02.874 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:25:02.874 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:25:03.454 -07 000000610 INF: AsyncDelayTimer waited 579ms
17-03-18 04:25:03.454 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:25:03.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:25:03.474 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:25:03.474 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:25:03.474 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:25:03.704 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:25:03.724 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:25:03.724 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:25:03.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:25:03.794 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:25:03.794 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:25:03.894 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:25:03.894 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:25:04.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:04.034 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:25:04.034 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:25:04.034 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:25:04.164 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:25:04.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:25:05.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:05.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:05.104 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:25:05.104 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:25:05.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:05.264 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:25:05.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:25:05.264 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.999021,
17-03-18 04:25:05.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:06.134 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:25:06.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:25:06.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:25:06.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:25:06.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:06.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:06.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:06.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:06.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:06.754 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:25:06.754 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:25:06.754 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 65° ===================
17-03-18 04:25:06.754 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:25:06.884 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:25:06.884 -07 000000585 INF: FPGA: Recv TEC2EN 
17-03-18 04:25:06.894 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:25:06.894 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 65° ===================
17-03-18 04:25:06.894 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:25:06.894 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:25:11.474 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.959467,
17-03-18 04:25:11.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:11.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:16.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:17.824 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.997626,
17-03-18 04:25:21.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:23.184 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.041198,
17-03-18 04:25:26.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:26.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:28.544 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.016692,
17-03-18 04:25:32.604 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:32.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:34.884 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.02213,
17-03-18 04:25:36.664 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:36.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:36.904 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:25:36.904 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:25:36.904 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:25:36.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:36.944 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:25:36.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:25:36.944 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:25:37.074 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:25:37.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:25:37.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:37.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:37.684 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 04:25:37.684 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:25:37.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:37.844 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:25:37.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:25:37.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:25:38.004 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:25:38.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:25:38.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:25:38.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:25:38.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:38.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:38.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:38.624 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:25:38.624 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:25:38.624 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:25:38.624 -07 000000561 INF: WaitCommand(30000) start
17-03-18 04:25:38.624 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:25:39.844 -07 000000501 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:25:39.844 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-18 04:25:39.874 -07 000000501 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:25:39.874 -07 000000501 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:25:40.004 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:25:40.044 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:25:40.254 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.030322,
17-03-18 04:25:41.664 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:41.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:42.384 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:42.834 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:25:43.254 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 04:25:43.284 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:25:43.284 -07 000000501 INF: LanePump: Waited 3239 ms for pump motion to complete
17-03-18 04:25:43.284 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:25:43.284 -07 000000501 INF: ===================  ===================
17-03-18 04:25:46.574 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.024884,
17-03-18 04:25:46.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:46.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:51.664 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:51.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:51.934 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.978563,
17-03-18 04:25:56.664 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:25:56.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:25:57.304 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.96762,
17-03-18 04:26:01.664 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:01.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:26:03.364 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.975845,
17-03-18 04:26:06.674 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:06.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1753, R2=1822, Total=3575. Warn if over 250 bubbles per interval.
17-03-18 04:26:08.634 -07 000000561 INF: WaitCommand(30000) end
17-03-18 04:26:08.634 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 22° ===================
17-03-18 04:26:08.634 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:26:08.634 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:26:08.634 -07 000000474 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:26:08.644 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:26:08.644 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:26:08.644 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-18 04:26:08.654 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:08.654 -07 000000610 INF: =================== Cycle #125, Flow Cell Temp 22° ===================
17-03-18 04:26:08.654 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:26:08.654 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:26:08.654 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:26:08.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:08.694 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:26:08.694 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:26:08.694 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:26:08.734 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.99219,
17-03-18 04:26:08.824 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:26:08.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:11.674 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-18 04:26:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1757, R2=1826, Total=3583. Warn if over 250 bubbles per interval.
17-03-18 04:26:11.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:12.024 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:12.444 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:12.474 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:12.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:12.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:12.924 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:26:12.924 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:26:13.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:13.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:26:13.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:26:13.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:13.244 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:26:13.244 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:26:13.244 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:26:13.374 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:26:13.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:13.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:13.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:13.864 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:26:13.864 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:26:14.104 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.005817,
17-03-18 04:26:15.084 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:26:15.084 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:26:15.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:26:15.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:26:15.104 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:26:15.104 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:26:15.254 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:26:15.274 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:26:15.274 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:26:15.324 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:26:15.344 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:26:15.344 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:26:15.444 -07 000000610 INF: =================== Cycle #125, Pumping Reagent USM (2) ===================
17-03-18 04:26:15.444 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:26:15.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:15.474 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:26:15.474 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:26:15.474 -07 000000610 INF: =================== Cycle #125, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:26:15.604 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:26:15.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:16.664 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:26:16.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1759, R2=1828, Total=3587. Warn if over 250 bubbles per interval.
17-03-18 04:26:17.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:17.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:17.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:17.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:17.564 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:26:17.564 -07 000000610 INF: =================== Cycle #125, Pumping Reagent USM (2) ===================
17-03-18 04:26:17.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:17.724 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:26:17.724 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:26:17.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:17.884 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:26:17.884 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:26:17.884 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:26:18.014 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:26:18.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:18.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:18.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:18.504 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:26:18.504 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:26:19.474 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.019446,
17-03-18 04:26:19.724 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:26:19.724 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:26:19.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:26:19.744 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:26:19.744 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:26:19.744 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:26:19.894 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:26:19.914 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:26:19.914 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:26:19.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:26:19.984 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:26:19.984 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:26:20.084 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:26:20.084 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:26:20.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:20.114 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:26:20.114 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:26:20.114 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:26:20.244 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:26:20.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:21.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:21.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:21.184 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:26:21.184 -07 000000610 INF: =================== Cycle #125, Pumping Reagent PR2 (3) ===================
17-03-18 04:26:21.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:21.344 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:26:21.344 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:26:21.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:26:21.504 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:26:21.504 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:26:21.504 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:26:21.634 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:26:21.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:21.664 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:26:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1828, Total=3588. Warn if over 250 bubbles per interval.
17-03-18 04:26:22.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:22.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:22.124 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:26:22.124 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:26:22.124 -07 000000561 INF: WaitCommand(10000) start
17-03-18 04:26:22.124 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:26:22.124 -07 000000585 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:26:23.344 -07 000000585 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:26:23.344 -07 000000585 INF: LanePump: Xmit /1?\r
17-03-18 04:26:23.374 -07 000000585 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:26:23.374 -07 000000585 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:26:23.504 -07 000000585 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:26:23.544 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:24.854 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.027603,
17-03-18 04:26:25.074 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:25.464 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:26:25.884 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 04:26:25.914 -07 000000585 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:26:25.914 -07 000000585 INF: LanePump: Waited 2369 ms for pump motion to complete
17-03-18 04:26:25.914 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:26:25.914 -07 000000585 INF: ===================  ===================
17-03-18 04:26:26.664 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1828, Total=3588. Warn if over 250 bubbles per interval.
17-03-18 04:26:30.784 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.038479,
17-03-18 04:26:31.674 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:31.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1828, Total=3588. Warn if over 250 bubbles per interval.
17-03-18 04:26:32.134 -07 000000561 INF: WaitCommand(10000) end
17-03-18 04:26:32.134 -07 000000610 INF: =================== Cycle #125, Imaging ===================
17-03-18 04:26:32.134 -07 000000610 INF: Imaging Cycle 125: ScanTilesCommand Cycle 125 time start.
17-03-18 04:26:32.134 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:26:32.134 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:26:32.164 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:26:32.164 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:26:32.164 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:26:32.464 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:26:32.484 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:26:32.484 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:26:32.534 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:26:32.554 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:26:32.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:32.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:32.554 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:26:32.554 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:32.554 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:26:32.554 -07 000000438 INF: FPGA: Recv EXLED1ON 
17-03-18 04:26:32.564 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:26:32.564 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:26:32.564 -07 000000585 INF: FPGA: Recv EXLED1ADCR 23228
17-03-18 04:26:32.574 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:32.574 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23228 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.4 mW
17-03-18 04:26:32.574 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:26:32.574 -07 000000487 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:26:32.584 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:32.584 -07 000000501 INF: RedLED: LED was on for 20 ms
17-03-18 04:26:32.584 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-18 04:26:32.584 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:26:32.584 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:32.584 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:26:32.584 -07 000000585 INF: FPGA: Recv EXLED2ON 
17-03-18 04:26:32.594 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:26:32.594 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:26:32.594 -07 000000626 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 04:26:32.604 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:32.604 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 04:26:32.604 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:26:32.604 -07 000000561 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:26:32.614 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:32.614 -07 000000501 INF: GreenLED: LED was on for 19 ms
17-03-18 04:26:32.614 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:26:32.614 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:26:32.614 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 04:26:32.624 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:32.624 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:26:33.124 -07 000000444 INF: FPGA: Recv EMOUT
17-03-18 04:26:33.124 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:26:33.124 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:26:33.124 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-18 04:26:33.134 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:33.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:26:33.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126586958849352. ------
17-03-18 04:26:33.134 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:33.134 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17851 mm
17-03-18 04:26:33.134 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:26:33.134 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:26:33.134 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-18 04:26:33.134 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:33.134 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38995, sync = True, waitForSettling = False)
17-03-18 04:26:33.134 -07 000000444 INF: Z Motor: Moving to -0.178508 mm, started at -0.126587 mm, distance = -51.92 um
17-03-18 04:26:33.144 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:26:33.144 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:33.144 -07 000000474 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:26:33.154 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:26:33.154 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:33.154 -07 000000501 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:33.154 -07 000000501 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:26:33.154 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:26:33.164 -07 000000444 INF: FPGA: Xmit ZDACW 38995\n [Z Motor]
17-03-18 04:26:33.164 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:26:33.174 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:26:33.174 -07 000000444 INF: FPGA: 'ZDACW 38995' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:26:33.184 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:33.184 -07 000000561 INF: FPGA: Recv ZDACR 38995
17-03-18 04:26:33.194 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:26:33.194 -07 000000444 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:26:33.354 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:26:33.354 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:26:34.854 -07 000000438 INF: FPGA: Recv YMVTO 122703 24777
17-03-18 04:26:34.854 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 04:26:34.854 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:26:34.854 -07 000000501 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-18 04:26:34.854 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.469 mm, average velocity = 9.073 mm/sec
17-03-18 04:26:36.144 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.008536,
17-03-18 04:26:36.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:26:36.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:26:37.704 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:37.704 -07 000000438 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:26:37.714 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:37.714 -07 000000501 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:37.744 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:26:37.744 -07 000000501 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:26:37.744 -07 000000501 INF: Y Motor: Moved to 59.9102 after 4601 ms
17-03-18 04:26:37.744 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178508 mm (DAC = 38995)
17-03-18 04:26:37.744 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.744 -07 000000438 INF: FPGA: Recv ZSGSRD 37081
17-03-18 04:26:37.754 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:26:37.754 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.754 -07 000000438 INF: FPGA: Recv ZSGSRD 37068
17-03-18 04:26:37.764 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.764 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.764 -07 000000438 INF: FPGA: Recv ZSGSRD 37075
17-03-18 04:26:37.774 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.774 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.774 -07 000000438 INF: FPGA: Recv ZSGSRD 37078
17-03-18 04:26:37.784 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.784 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.784 -07 000000501 INF: FPGA: Recv ZSGSRD 37075
17-03-18 04:26:37.794 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.794 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.794 -07 000000438 INF: FPGA: Recv ZSGSRD 37077
17-03-18 04:26:37.804 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.804 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.804 -07 000000626 INF: FPGA: Recv ZSGSRD 37076
17-03-18 04:26:37.814 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.814 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.814 -07 000000501 INF: FPGA: Recv ZSGSRD 37079
17-03-18 04:26:37.824 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.824 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.824 -07 000000608 INF: FPGA: Recv ZSGSRD 37075
17-03-18 04:26:37.834 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.834 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:37.834 -07 000000626 INF: FPGA: Recv ZSGSRD 37077
17-03-18 04:26:37.844 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.844 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:37.844 -07 000000438 INF: FPGA: Recv ZPIEZORD 33247
17-03-18 04:26:37.854 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:37.854 -07 000000585 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.5 V.
17-03-18 04:26:37.854 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37076 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37076 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37068 (-177.6 uncal um), Max = 37081 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:26:37.854 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37076, posNoise = 5, negNoise = 8
17-03-18 04:26:37.854 -07 000000585 INF: Z Motor: After move to -0.178508, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:37.854 -07 000000585 INF: Z Motor: Settle wait time = 4605 ms, measure time = 105 ms (allowed 150 ms), total time = 4710 ms
17-03-18 04:26:37.854 -07 000000585 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:26:37.904 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 04:26:37.904 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:26:37.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:37.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:37.904 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:37.904 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:26:37.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:37.904 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:37.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:37.904 -07 000000585 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:26:37.934 -07 000000585 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:26:37.934 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:26:37.934 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:26:37.934 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:26:37.954 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:26:37.954 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 04:26:37.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:26:37.994 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:26:38.294 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:26:38.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:26:38.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:26:38.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:26:38.334 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:26:38.334 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:26:38.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:26:38.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:26:38.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:38.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:26:38.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:26:38.534 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:38.534 -07 000000626 INF: Image SNR check: start
17-03-18 04:26:38.534 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:38.544 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:26:38.544 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:26:38.544 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=140.83]
17-03-18 04:26:38.544 -07 000000626 INF: Autofocus start
17-03-18 04:26:38.544 -07 000000626 INF: MeasureProfile start
17-03-18 04:26:38.554 -07 000000626 INF: MeasureProfile done
17-03-18 04:26:38.554 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:26:38.554 -07 000000626 INF: Autofocus finished
17-03-18 04:26:38.744 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:26:38.744 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:26:38.744 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178507441379064. ----------
17-03-18 04:26:38.744 -07 000000610 INF: Cycle	125	Tile	1	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:26:38.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37492, sync = True, waitForSettling = True)
17-03-18 04:26:38.754 -07 000000610 INF: Z Motor: Moving to -0.171627 mm, started at -0.178507 mm, distance = 6.88 um
17-03-18 04:26:38.754 -07 000000610 INF: FPGA: Xmit ZDACW 37492\n [Z Motor]
17-03-18 04:26:38.754 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:26:38.764 -07 000000610 INF: FPGA: 'ZDACW 37492' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:26:38.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:38.764 -07 000000438 INF: FPGA: Recv ZDACR 37492
17-03-18 04:26:38.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:26:38.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.924 -07 000000501 INF: FPGA: Recv ZSGSRD 36006
17-03-18 04:26:38.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:38.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.934 -07 000000438 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:26:38.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.944 -07 000000585 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:26:38.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.954 -07 000000585 INF: FPGA: Recv ZSGSRD 36012
17-03-18 04:26:38.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.964 -07 000000585 INF: FPGA: Recv ZSGSRD 36005
17-03-18 04:26:38.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.974 -07 000000438 INF: FPGA: Recv ZSGSRD 36006
17-03-18 04:26:38.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.984 -07 000000501 INF: FPGA: Recv ZSGSRD 36003
17-03-18 04:26:38.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:38.994 -07 000000626 INF: FPGA: Recv ZSGSRD 36008
17-03-18 04:26:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:39.004 -07 000000438 INF: FPGA: Recv ZSGSRD 36012
17-03-18 04:26:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:39.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:39.014 -07 000000626 INF: FPGA: Recv ZSGSRD 36007
17-03-18 04:26:39.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:39.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:39.024 -07 000000501 INF: FPGA: Recv ZPIEZORD 31854
17-03-18 04:26:39.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:39.034 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -9.2 V.
17-03-18 04:26:39.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36007 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36006 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36003 (-170.7 uncal um), Max = 36012 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:26:39.034 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36007, posNoise = 5, negNoise = 4
17-03-18 04:26:39.034 -07 000000610 INF: Z Motor: After move to -0.171627, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:39.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:26:39.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:39.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:39.034 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:39.034 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:26:39.034 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:39.034 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:39.034 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:26:39.034 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:26:39.034 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:39.034 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:26:39.034 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:26:39.034 -07 000000585 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:26:39.044 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:26:39.044 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:26:39.054 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:26:39.054 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:26:39.064 -07 000000585 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 04:26:39.064 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:26:39.064 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:26:39.064 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:26:39.074 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:26:39.074 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 04:26:39.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37669 150\n [Camera]
17-03-18 04:26:39.284 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:26:39.694 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:26:39.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:26:39.704 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:39.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:26:39.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:26:39.704 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:39.704 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:39.704 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) start.
17-03-18 04:26:39.714 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:39.714 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:26:39.894 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37669 806
17-03-18 04:26:40.044 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:26:40.094 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:26:40.094 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:26:40.094 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:40.094 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594819656, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:26:40.094 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:26:40.094 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:40.094 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:40.094 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:40.094 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:26:40.104 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:26:40.244 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:26:40.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:26:40.244 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:40.244 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:26:40.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:26:40.244 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:40.374 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:40.374 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 04:26:40.374 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:40.374 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-18 04:26:40.434 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:26:40.434 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:26:40.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37669 150' command took 2 ms to send, 1346 ms to get response, and 1358 ms overall
17-03-18 04:26:40.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:26:40.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171639958599522. ------
17-03-18 04:26:40.444 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:40.444 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17789 mm
17-03-18 04:26:40.444 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:26:40.444 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38860, sync = True, waitForSettling = False)
17-03-18 04:26:40.444 -07 000000608 INF: Z Motor: Moving to -0.177890 mm, started at -0.171640 mm, distance = -6.25 um
17-03-18 04:26:40.444 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:26:40.444 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:26:40.444 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:40.454 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:26:40.454 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:40.454 -07 000000487 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:26:40.464 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:26:40.464 -07 000000561 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:40.464 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:26:40.464 -07 000000561 INF: Y Motor: Moving 1332 steps2
17-03-18 04:26:40.464 -07 000000608 INF: FPGA: Xmit ZDACW 38860\n [Z Motor]
17-03-18 04:26:40.464 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:26:40.474 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:26:40.474 -07 000000608 INF: FPGA: 'ZDACW 38860' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:26:40.484 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:26:40.494 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:40.494 -07 000000501 INF: FPGA: Recv ZDACR 38860
17-03-18 04:26:40.504 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:26:40.504 -07 000000608 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 04:26:40.674 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:26:40.674 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:26:40.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:26:40.774 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:26:40.774 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:40.774 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:26:40.774 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:26:40.774 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:40.774 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:40.774 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 04:26:40.774 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:40.784 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-18 04:26:40.854 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:26:40.854 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:26:40.894 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:40.904 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:26:40.904 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:26:40.904 -07 000000561 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:40.904 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:26:40.904 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 04:26:41.514 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.003063,
17-03-18 04:26:41.674 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:41.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:26:41.854 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:41.854 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:26:41.864 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.864 -07 000000561 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:41.894 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:26:41.894 -07 000000561 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:26:41.894 -07 000000561 INF: Y Motor: Moved to 60.7324 after 1448 ms (table move)
17-03-18 04:26:41.894 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177890 mm (DAC = 38860)
17-03-18 04:26:41.894 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.904 -07 000000561 INF: FPGA: Recv ZSGSRD 36987
17-03-18 04:26:41.904 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:26:41.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.904 -07 000000561 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:26:41.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.914 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.914 -07 000000611 INF: FPGA: Recv ZSGSRD 36981
17-03-18 04:26:41.924 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.924 -07 000000462 INF: FPGA: Recv ZSGSRD 36986
17-03-18 04:26:41.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:26:41.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.944 -07 000000611 INF: FPGA: Recv ZSGSRD 36980
17-03-18 04:26:41.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.954 -07 000000611 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:26:41.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.964 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.964 -07 000000611 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:26:41.974 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.974 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.974 -07 000000561 INF: FPGA: Recv ZSGSRD 36984
17-03-18 04:26:41.984 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.984 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:41.984 -07 000000611 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:26:41.994 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:41.994 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:41.994 -07 000000611 INF: FPGA: Recv ZPIEZORD 33160
17-03-18 04:26:42.004 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:42.004 -07 000000444 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.5 V.
17-03-18 04:26:42.004 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36982 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36983 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36987 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:26:42.004 -07 000000444 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36982, posNoise = 5, negNoise = 9
17-03-18 04:26:42.004 -07 000000444 INF: Z Motor: After move to -0.177890, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:42.004 -07 000000444 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-18 04:26:42.004 -07 000000444 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:26:42.054 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 04:26:42.054 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:26:42.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:42.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:42.054 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:42.054 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:42.054 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:26:42.054 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:42.054 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:42.054 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:26:42.064 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:26:42.064 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:26:42.074 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:26:42.074 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:26:42.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:26:42.124 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:26:42.424 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:26:42.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:26:42.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:26:42.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 04:26:42.464 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:26:42.464 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:26:42.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 04:26:42.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:26:42.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:42.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:26:42.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:26:42.564 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:42.564 -07 000000444 INF: Autofocus start
17-03-18 04:26:42.564 -07 000000444 INF: MeasureProfile start
17-03-18 04:26:42.564 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:42.574 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:42.574 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:26:42.574 -07 000000444 INF: MeasureProfile done
17-03-18 04:26:42.574 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:26:42.574 -07 000000444 INF: Autofocus finished
17-03-18 04:26:42.774 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:26:42.774 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:26:42.774 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177903565437739. ----------
17-03-18 04:26:42.774 -07 000000610 INF: Cycle	125	Tile	2	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:26:42.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-18 04:26:42.784 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.177904 mm, distance = 6.82 um
17-03-18 04:26:42.784 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-18 04:26:42.784 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:26:42.794 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:26:42.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:42.794 -07 000000487 INF: FPGA: Recv ZDACR 37374
17-03-18 04:26:42.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:42.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:26:42.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:42.954 -07 000000585 INF: FPGA: Recv ZSGSRD 35928
17-03-18 04:26:42.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:42.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:42.964 -07 000000487 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:26:42.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:42.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:42.974 -07 000000462 INF: FPGA: Recv ZSGSRD 35920
17-03-18 04:26:42.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:42.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:42.984 -07 000000487 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:26:42.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:42.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:42.994 -07 000000611 INF: FPGA: Recv ZSGSRD 35925
17-03-18 04:26:43.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:43.004 -07 000000585 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:26:43.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:43.014 -07 000000474 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:26:43.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:43.024 -07 000000611 INF: FPGA: Recv ZSGSRD 35925
17-03-18 04:26:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:43.034 -07 000000561 INF: FPGA: Recv ZSGSRD 35925
17-03-18 04:26:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:43.044 -07 000000611 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:26:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:43.054 -07 000000585 INF: FPGA: Recv ZPIEZORD 31741
17-03-18 04:26:43.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:43.064 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 04:26:43.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35923 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35923 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35920 (-170.2 uncal um), Max = 35928 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:26:43.064 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35923, posNoise = 5, negNoise = 3
17-03-18 04:26:43.064 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:43.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:26:43.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:43.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:43.064 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:43.064 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:43.064 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:26:43.064 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:26:43.064 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:26:43.064 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:43.064 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:26:43.064 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:26:43.064 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:43.064 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:26:43.064 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:26:43.064 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:26:43.074 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:26:43.074 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:26:43.084 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:26:43.084 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:26:43.084 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:26:43.084 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:26:43.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37551 150\n [Camera]
17-03-18 04:26:43.284 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:26:43.704 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:26:43.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:26:43.714 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:43.714 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:43.714 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:26:43.714 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:26:43.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:26:43.714 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:43.714 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:43.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:26:43.904 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 806
17-03-18 04:26:44.054 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:26:44.114 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:26:44.114 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:26:44.114 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:44.114 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:26:44.114 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:26:44.114 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:44.114 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:44.114 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:26:44.114 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:44.124 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:26:44.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:26:44.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:26:44.254 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:44.254 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:44.254 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:26:44.254 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:26:44.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:26:44.254 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:44.254 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:44.254 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:26:44.444 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:26:44.444 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:26:44.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37551 150' command took 2 ms to send, 1346 ms to get response, and 1357 ms overall
17-03-18 04:26:44.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:26:44.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171100324779614. ------
17-03-18 04:26:44.564 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17785 mm
17-03-18 04:26:44.564 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:26:44.564 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:44.564 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:44.564 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:26:44.564 -07 000000487 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:26:44.564 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38852, sync = True, waitForSettling = False)
17-03-18 04:26:44.564 -07 000000608 INF: Z Motor: Moving to -0.177853 mm, started at -0.171100 mm, distance = -6.75 um
17-03-18 04:26:44.574 -07 000000608 INF: FPGA: Xmit ZDACW 38852\n [Z Motor]
17-03-18 04:26:44.574 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:26:44.574 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:26:44.584 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:44.584 -07 000000608 INF: FPGA: 'ZDACW 38852' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:26:44.584 -07 000000462 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:26:44.594 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:26:44.594 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:26:44.594 -07 000000487 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:44.594 -07 000000487 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:26:44.594 -07 000000487 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:26:44.604 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:44.604 -07 000000474 INF: FPGA: Recv ZDACR 38852
17-03-18 04:26:44.614 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:26:44.614 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:26:44.614 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:26:44.644 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:26:44.644 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:26:44.644 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:44.644 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:26:44.644 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:26:44.644 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:44.644 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:44.654 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:26:44.654 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:26:44.654 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:26:44.794 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:26:44.794 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:26:44.984 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:26:44.984 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:26:45.034 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:45.034 -07 000000626 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:26:45.044 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:26:45.044 -07 000000487 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:45.044 -07 000000487 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:26:45.044 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 04:26:45.994 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:45.994 -07 000000611 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:26:46.004 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:46.004 -07 000000487 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:46.034 -07 000000487 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:26:46.034 -07 000000487 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:26:46.034 -07 000000487 INF: Y Motor: Moved to 61.5635 after 1464 ms (table move)
17-03-18 04:26:46.034 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177853 mm (DAC = 38852)
17-03-18 04:26:46.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.034 -07 000000487 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:26:46.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:26:46.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.044 -07 000000626 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:26:46.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.054 -07 000000487 INF: FPGA: Recv ZSGSRD 36980
17-03-18 04:26:46.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.064 -07 000000626 INF: FPGA: Recv ZSGSRD 36981
17-03-18 04:26:46.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.074 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.074 -07 000000611 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:26:46.084 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.084 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.084 -07 000000611 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:26:46.094 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.094 -07 000000626 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:26:46.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.104 -07 000000626 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:26:46.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.114 -07 000000626 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:26:46.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:46.124 -07 000000487 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:26:46.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.134 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:46.134 -07 000000611 INF: FPGA: Recv ZPIEZORD 33193
17-03-18 04:26:46.144 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.144 -07 000000455 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.4 V.
17-03-18 04:26:46.144 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36975 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36966 (-176.9 uncal um), Max = 36983 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:26:46.144 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36975, posNoise = 8, negNoise = 9
17-03-18 04:26:46.144 -07 000000455 INF: Z Motor: After move to -0.177853, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:46.144 -07 000000455 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:26:46.144 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:26:46.194 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:26:46.194 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:26:46.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:46.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:46.194 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:46.194 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:46.194 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:26:46.194 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:46.194 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:46.194 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:26:46.204 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:26:46.204 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:26:46.204 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:26:46.214 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:26:46.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:26:46.254 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:26:46.554 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:26:46.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:26:46.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:26:46.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:26:46.594 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:26:46.594 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:26:46.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:26:46.664 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:46.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:26:46.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:46.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:26:46.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:26:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:26:46.694 -07 000000611 INF: Autofocus start
17-03-18 04:26:46.694 -07 000000611 INF: MeasureProfile start
17-03-18 04:26:46.694 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:46.694 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:46.704 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:46.704 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:26:46.704 -07 000000611 INF: MeasureProfile done
17-03-18 04:26:46.704 -07 000000611 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:26:46.704 -07 000000611 INF: Autofocus finished
17-03-18 04:26:46.884 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.985358,
17-03-18 04:26:46.904 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:26:46.904 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:26:46.904 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177858595952746. ----------
17-03-18 04:26:46.904 -07 000000610 INF: Cycle	125	Tile	3	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:26:46.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37385, sync = True, waitForSettling = True)
17-03-18 04:26:46.914 -07 000000610 INF: Z Motor: Moving to -0.171138 mm, started at -0.177859 mm, distance = 6.72 um
17-03-18 04:26:46.924 -07 000000610 INF: FPGA: Xmit ZDACW 37385\n [Z Motor]
17-03-18 04:26:46.924 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:26:46.934 -07 000000610 INF: FPGA: 'ZDACW 37385' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:26:46.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:46.934 -07 000000487 INF: FPGA: Recv ZDACR 37385
17-03-18 04:26:46.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:46.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:26:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.094 -07 000000501 INF: FPGA: Recv ZSGSRD 35931
17-03-18 04:26:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.104 -07 000000487 INF: FPGA: Recv ZSGSRD 35932
17-03-18 04:26:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.114 -07 000000455 INF: FPGA: Recv ZSGSRD 35927
17-03-18 04:26:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.124 -07 000000626 INF: FPGA: Recv ZSGSRD 35929
17-03-18 04:26:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.134 -07 000000611 INF: FPGA: Recv ZSGSRD 35927
17-03-18 04:26:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35932
17-03-18 04:26:47.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.154 -07 000000501 INF: FPGA: Recv ZSGSRD 35931
17-03-18 04:26:47.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.164 -07 000000626 INF: FPGA: Recv ZSGSRD 35929
17-03-18 04:26:47.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35930
17-03-18 04:26:47.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:47.184 -07 000000611 INF: FPGA: Recv ZSGSRD 35932
17-03-18 04:26:47.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:47.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:47.204 -07 000000501 INF: FPGA: Recv ZPIEZORD 31787
17-03-18 04:26:47.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:26:47.214 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 04:26:47.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35930 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35927 (-170.2 uncal um), Max = 35932 (-170.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:26:47.214 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35930, posNoise = 2, negNoise = 3
17-03-18 04:26:47.214 -07 000000610 INF: Z Motor: After move to -0.171138, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:47.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 04:26:47.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:47.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:47.214 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:47.214 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:26:47.214 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:47.214 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:26:47.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:26:47.214 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:47.214 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:26:47.214 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:26:47.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:26:47.214 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:26:47.214 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:26:47.214 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:26:47.214 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:26:47.214 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:26:47.234 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:26:47.234 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:26:47.234 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:26:47.234 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:26:47.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37561 150\n [Camera]
17-03-18 04:26:47.444 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:26:47.874 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:26:47.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:26:47.874 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:47.874 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:26:47.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:26:47.874 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:47.874 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:47.874 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:26:47.884 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:47.884 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:26:48.064 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37561 806
17-03-18 04:26:48.214 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:26:48.264 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:26:48.264 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:26:48.264 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:48.264 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:26:48.264 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:26:48.264 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:48.264 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:48.264 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:26:48.274 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:48.274 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:26:48.414 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:26:48.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:26:48.414 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:48.414 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:26:48.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:26:48.424 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:48.424 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:48.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:26:48.424 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:48.424 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 04:26:48.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:26:48.604 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:26:48.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37561 150' command took 2 ms to send, 1348 ms to get response, and 1370 ms overall
17-03-18 04:26:48.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:26:48.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171145294264606. ------
17-03-18 04:26:48.614 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:48.804 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:26:48.804 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:26:48.804 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:48.804 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:26:48.804 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:26:48.804 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:48.814 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:48.814 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:48.814 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:26:48.814 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:26:48.824 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17733 mm
17-03-18 04:26:48.824 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:26:48.824 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:48.824 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 206 ms to get response, and 211 ms overall
17-03-18 04:26:48.824 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:26:48.824 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:26:48.824 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 04:26:48.834 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:49.824 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38738, sync = True, waitForSettling = False)
17-03-18 04:26:49.824 -07 000000474 INF: Z Motor: Moving to -0.177331 mm, started at -0.171145 mm, distance = -6.19 um
17-03-18 04:26:49.824 -07 000000474 INF: FPGA: Xmit ZDACW 38738\n [Z Motor]
17-03-18 04:26:50.824 -07 000000585 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:26:50.824 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:26:50.824 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:26:50.824 -07 000000474 INF: FPGA: 'ZDACW 38738' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 04:26:50.824 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1992 ms overall
17-03-18 04:26:50.824 -07 000000561 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:50.824 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:26:50.824 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:26:50.824 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1993 ms overall
17-03-18 04:26:50.824 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:50.824 -07 000000585 INF: FPGA: Recv ZDACR 38738
17-03-18 04:26:50.834 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:50.834 -07 000000474 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 04:26:50.834 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:26:51.204 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 04:26:51.204 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:26:51.254 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:51.264 -07 000000585 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:26:51.264 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:26:51.264 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:51.264 -07 000000561 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:26:51.264 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-18 04:26:51.674 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:51.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:26:52.214 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:52.214 -07 000000444 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:26:52.224 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:52.224 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:52.244 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:26:52.254 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:26:52.254 -07 000000561 INF: Y Motor: Moved to 62.3950 after 3421 ms (table move)
17-03-18 04:26:52.254 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177331 mm (DAC = 38738)
17-03-18 04:26:52.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.274 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.978563,
17-03-18 04:26:52.274 -07 000000561 INF: FPGA: Recv ZSGSRD 36892
17-03-18 04:26:52.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:26:52.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36887
17-03-18 04:26:52.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:26:52.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.304 -07 000000585 INF: FPGA: Recv ZSGSRD 36891
17-03-18 04:26:52.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:52.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.334 -07 000000585 INF: FPGA: Recv ZSGSRD 36899
17-03-18 04:26:52.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:26:52.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.344 -07 000000561 INF: FPGA: Recv ZSGSRD 36900
17-03-18 04:26:52.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:52.364 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.364 -07 000000444 INF: FPGA: Recv ZSGSRD 36899
17-03-18 04:26:52.374 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:26:52.374 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.374 -07 000000585 INF: FPGA: Recv ZSGSRD 36893
17-03-18 04:26:52.384 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:52.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.384 -07 000000474 INF: FPGA: Recv ZSGSRD 36893
17-03-18 04:26:52.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:52.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.394 -07 000000474 INF: FPGA: Recv ZSGSRD 36892
17-03-18 04:26:52.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:26:52.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:52.404 -07 000000561 INF: FPGA: Recv ZSGSRD 36889
17-03-18 04:26:52.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:52.414 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:52.414 -07 000000438 INF: FPGA: Recv ZPIEZORD 33029
17-03-18 04:26:52.424 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:52.424 -07 000000462 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.6 V.
17-03-18 04:26:52.424 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36894 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36892 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36887 (-176.4 uncal um), Max = 36900 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:26:52.424 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36894, posNoise = 6, negNoise = 7
17-03-18 04:26:52.424 -07 000000462 INF: Z Motor: After move to -0.177331, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:52.424 -07 000000462 INF: Z Motor: Settle wait time = 2432 ms, measure time = 167 ms (allowed 150 ms), total time = 2599 ms
17-03-18 04:26:52.424 -07 000000462 INF: Z Motor: Warning: Actual position measuring time = 167 ms, longer than max expected time of 150 ms
17-03-18 04:26:52.424 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3597 ms
17-03-18 04:26:52.424 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:26:52.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:52.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:52.424 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:52.424 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:52.424 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:26:52.424 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:52.424 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:52.424 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:26:52.434 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:26:52.434 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:26:52.444 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 04:26:52.444 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:26:52.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:26:52.494 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:26:52.794 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:26:52.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:26:52.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:26:52.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 04:26:52.834 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:26:52.834 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:26:52.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 04:26:52.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:26:52.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:52.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:26:52.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:26:52.934 -07 000000462 INF: Autofocus start
17-03-18 04:26:52.934 -07 000000462 INF: MeasureProfile start
17-03-18 04:26:52.934 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:52.934 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:52.944 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:52.944 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:26:52.944 -07 000000462 INF: MeasureProfile done
17-03-18 04:26:52.944 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:26:52.944 -07 000000462 INF: Autofocus finished
17-03-18 04:26:53.144 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:26:53.144 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:26:53.144 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177338234769264. ----------
17-03-18 04:26:53.144 -07 000000610 INF: Cycle	125	Tile	4	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:26:53.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37235, sync = True, waitForSettling = True)
17-03-18 04:26:53.154 -07 000000610 INF: Z Motor: Moving to -0.170451 mm, started at -0.177338 mm, distance = 6.89 um
17-03-18 04:26:53.154 -07 000000610 INF: FPGA: Xmit ZDACW 37235\n [Z Motor]
17-03-18 04:26:53.154 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:26:53.164 -07 000000610 INF: FPGA: 'ZDACW 37235' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:53.164 -07 000000487 INF: FPGA: Recv ZDACR 37235
17-03-18 04:26:53.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:26:53.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.324 -07 000000462 INF: FPGA: Recv ZSGSRD 35827
17-03-18 04:26:53.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:53.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.334 -07 000000626 INF: FPGA: Recv ZSGSRD 35832
17-03-18 04:26:53.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.344 -07 000000438 INF: FPGA: Recv ZSGSRD 35823
17-03-18 04:26:53.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.354 -07 000000487 INF: FPGA: Recv ZSGSRD 35822
17-03-18 04:26:53.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.364 -07 000000438 INF: FPGA: Recv ZSGSRD 35819
17-03-18 04:26:53.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.374 -07 000000561 INF: FPGA: Recv ZSGSRD 35825
17-03-18 04:26:53.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35822
17-03-18 04:26:53.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.394 -07 000000608 INF: FPGA: Recv ZSGSRD 35822
17-03-18 04:26:53.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35826
17-03-18 04:26:53.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:53.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35822
17-03-18 04:26:53.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:53.424 -07 000000611 INF: FPGA: Recv ZPIEZORD 31620
17-03-18 04:26:53.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:53.434 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.3 V.
17-03-18 04:26:53.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35824 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35819 (-169.6 uncal um), Max = 35832 (-169.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:26:53.434 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35824, posNoise = 8, negNoise = 5
17-03-18 04:26:53.434 -07 000000610 INF: Z Motor: After move to -0.170451, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:53.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:26:53.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:53.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:53.434 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:53.434 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:53.434 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:26:53.434 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:53.434 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:26:53.434 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:26:53.434 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:26:53.434 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:26:53.434 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:26:53.434 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:26:53.444 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:26:53.444 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:26:53.444 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:26:53.444 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:26:53.454 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:26:53.454 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:26:53.454 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:26:53.454 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:26:53.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37412 150\n [Camera]
17-03-18 04:26:53.654 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:26:54.084 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:26:54.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:26:54.084 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:54.084 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:54.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:26:54.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:26:54.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:26:54.084 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:54.084 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:54.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:26:54.274 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37412 806
17-03-18 04:26:54.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:26:54.464 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:26:54.464 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:26:54.464 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:54.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:26:54.474 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:26:54.474 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:54.474 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:26:54.474 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:26:54.474 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:54.484 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:26:54.624 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:26:54.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:26:54.624 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:54.624 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:54.624 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:26:54.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:26:54.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:26:54.634 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:54.634 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:54.634 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:26:54.814 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:26:54.814 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:26:54.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37412 150' command took 2 ms to send, 1347 ms to get response, and 1357 ms overall
17-03-18 04:26:54.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:26:54.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170464327777579. ------
17-03-18 04:26:54.824 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:54.824 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17705 mm
17-03-18 04:26:54.824 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:26:54.824 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:26:54.824 -07 000000444 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:26:54.834 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:55.004 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:26:55.004 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:26:55.004 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:55.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:26:55.014 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:26:55.014 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:55.014 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:26:55.014 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:26:55.014 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:55.024 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:26:55.164 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38677, sync = True, waitForSettling = False)
17-03-18 04:26:55.164 -07 000000474 INF: Z Motor: Moving to -0.177052 mm, started at -0.170464 mm, distance = -6.59 um
17-03-18 04:26:55.164 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:55.164 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:26:55.164 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 321 ms to get response, and 335 ms overall
17-03-18 04:26:55.164 -07 000000444 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:55.164 -07 000000444 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:26:55.164 -07 000000444 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:26:55.164 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 331 ms to get response, and 338 ms overall
17-03-18 04:26:55.164 -07 000000474 INF: FPGA: Xmit ZDACW 38677\n [Z Motor]
17-03-18 04:26:55.164 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:26:55.174 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:26:55.174 -07 000000474 INF: FPGA: 'ZDACW 38677' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:55.184 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:26:55.194 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:55.194 -07 000000461 INF: FPGA: Recv ZDACR 38677
17-03-18 04:26:55.204 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:26:55.204 -07 000000474 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:26:55.374 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:26:55.374 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 213 ms overall
17-03-18 04:26:55.554 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:26:55.554 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 04:26:55.614 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:55.614 -07 000000455 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:26:55.624 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:55.624 -07 000000444 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:55.624 -07 000000444 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:26:55.624 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.115 mm/sec
17-03-18 04:26:56.574 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:56.574 -07 000000461 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:26:56.584 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:56.584 -07 000000444 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:56.614 -07 000000444 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:26:56.614 -07 000000444 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:26:56.614 -07 000000444 INF: Y Motor: Moved to 63.2236 after 1784 ms (table move)
17-03-18 04:26:56.614 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177052 mm (DAC = 38677)
17-03-18 04:26:56.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.614 -07 000000444 INF: FPGA: Recv ZSGSRD 36858
17-03-18 04:26:56.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:26:56.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.624 -07 000000455 INF: FPGA: Recv ZSGSRD 36853
17-03-18 04:26:56.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.634 -07 000000455 INF: FPGA: Recv ZSGSRD 36855
17-03-18 04:26:56.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.644 -07 000000474 INF: FPGA: Recv ZSGSRD 36849
17-03-18 04:26:56.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.654 -07 000000474 INF: FPGA: Recv ZSGSRD 36852
17-03-18 04:26:56.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.664 -07 000000444 INF: FPGA: Recv ZSGSRD 36848
17-03-18 04:26:56.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.674 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:26:56.674 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:26:56.674 -07 000000474 INF: FPGA: Recv ZSGSRD 36852
17-03-18 04:26:56.684 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:26:56.684 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.684 -07 000000474 INF: FPGA: Recv ZSGSRD 36852
17-03-18 04:26:56.694 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:26:56.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.694 -07 000000461 INF: FPGA: Recv ZSGSRD 36850
17-03-18 04:26:56.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:56.704 -07 000000474 INF: FPGA: Recv ZSGSRD 36852
17-03-18 04:26:56.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.714 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:56.714 -07 000000455 INF: FPGA: Recv ZPIEZORD 32991
17-03-18 04:26:56.724 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:56.724 -07 000000561 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.5 V.
17-03-18 04:26:56.724 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36852 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36852 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36848 (-176.2 uncal um), Max = 36858 (-176.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:26:56.724 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36852, posNoise = 6, negNoise = 4
17-03-18 04:26:56.724 -07 000000561 INF: Z Motor: After move to -0.177052, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:56.724 -07 000000561 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:26:56.724 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:26:56.774 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1946 ms
17-03-18 04:26:56.774 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:26:56.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:56.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:56.774 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:56.774 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:56.774 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:26:56.774 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:56.774 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:26:56.774 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:26:56.774 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:26:56.774 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:26:56.794 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:26:56.794 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:26:56.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:26:56.834 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:26:57.134 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:26:57.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:26:57.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:26:57.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:26:57.174 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:26:57.174 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:26:57.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:26:57.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 04:26:57.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:57.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:26:57.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 04:26:57.274 -07 000000461 INF: Autofocus start
17-03-18 04:26:57.274 -07 000000461 INF: MeasureProfile start
17-03-18 04:26:57.274 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:57.274 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:57.284 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:26:57.284 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:26:57.284 -07 000000461 INF: MeasureProfile done
17-03-18 04:26:57.284 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:26:57.284 -07 000000461 INF: Autofocus finished
17-03-18 04:26:57.484 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:26:57.484 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:26:57.484 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.17706841785931. ----------
17-03-18 04:26:57.484 -07 000000610 INF: Cycle	125	Tile	5	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:26:57.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37192, sync = True, waitForSettling = True)
17-03-18 04:26:57.494 -07 000000610 INF: Z Motor: Moving to -0.170254 mm, started at -0.177068 mm, distance = 6.81 um
17-03-18 04:26:57.494 -07 000000610 INF: FPGA: Xmit ZDACW 37192\n [Z Motor]
17-03-18 04:26:57.494 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:26:57.504 -07 000000610 INF: FPGA: 'ZDACW 37192' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:57.504 -07 000000626 INF: FPGA: Recv ZDACR 37192
17-03-18 04:26:57.514 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:26:57.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.664 -07 000000474 INF: FPGA: Recv ZSGSRD 35792
17-03-18 04:26:57.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.684 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.993549,
17-03-18 04:26:57.684 -07 000000461 INF: FPGA: Recv ZSGSRD 35790
17-03-18 04:26:57.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:26:57.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.714 -07 000000474 INF: FPGA: Recv ZSGSRD 35788
17-03-18 04:26:57.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:26:57.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.744 -07 000000455 INF: FPGA: Recv ZSGSRD 35795
17-03-18 04:26:57.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:26:57.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.754 -07 000000561 INF: FPGA: Recv ZSGSRD 35792
17-03-18 04:26:57.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.764 -07 000000626 INF: FPGA: Recv ZSGSRD 35788
17-03-18 04:26:57.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.774 -07 000000561 INF: FPGA: Recv ZSGSRD 35797
17-03-18 04:26:57.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.784 -07 000000438 INF: FPGA: Recv ZSGSRD 35791
17-03-18 04:26:57.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.794 -07 000000462 INF: FPGA: Recv ZSGSRD 35792
17-03-18 04:26:57.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:26:57.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35793
17-03-18 04:26:57.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:26:57.814 -07 000000462 INF: FPGA: Recv ZPIEZORD 31559
17-03-18 04:26:57.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:26:57.824 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.675 V. Piezo Error = -9.3 V.
17-03-18 04:26:57.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35792 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35792 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35788 (-169.4 uncal um), Max = 35797 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:26:57.824 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35792, posNoise = 5, negNoise = 4
17-03-18 04:26:57.824 -07 000000610 INF: Z Motor: After move to -0.170254, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:26:57.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 04:26:57.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:26:57.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:26:57.824 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:26:57.824 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:26:57.824 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:26:57.824 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:26:57.824 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:26:57.824 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:26:57.824 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:26:57.824 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:26:57.824 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:26:57.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:26:57.824 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:26:57.824 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:26:57.834 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:26:57.834 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:26:57.844 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 04:26:57.844 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:26:57.844 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:26:57.844 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:26:57.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37369 150\n [Camera]
17-03-18 04:26:58.044 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:26:58.474 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:26:58.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:26:58.474 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:58.474 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:26:58.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:26:58.474 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:58.474 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:58.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:26:58.484 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:58.484 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:26:58.664 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37369 806
17-03-18 04:26:58.814 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:26:58.854 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:26:58.854 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:26:58.854 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:58.854 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:26:58.854 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:26:58.854 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:58.864 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:58.864 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:58.864 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:26:58.864 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:26:59.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:26:59.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:26:59.014 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:26:59.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:26:59.014 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:26:59.014 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:26:59.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:26:59.024 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:26:59.024 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:26:59.024 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:26:59.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:26:59.204 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:26:59.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37369 150' command took 2 ms to send, 1347 ms to get response, and 1357 ms overall
17-03-18 04:26:59.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:26:59.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170258752989043. ------
17-03-18 04:26:59.214 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:26:59.214 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17634 mm
17-03-18 04:26:59.214 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:26:59.214 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:26:59.214 -07 000000561 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:26:59.224 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:59.424 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:26:59.424 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:26:59.424 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:59.424 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 04:26:59.424 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:26:59.424 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:26:59.434 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:59.434 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:26:59.434 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:26:59.554 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 04:26:59.554 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38520, sync = True, waitForSettling = False)
17-03-18 04:26:59.554 -07 000000585 INF: Z Motor: Moving to -0.176333 mm, started at -0.170259 mm, distance = -6.07 um
17-03-18 04:26:59.554 -07 000000585 INF: FPGA: Xmit ZDACW 38520\n [Z Motor]
17-03-18 04:26:59.564 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:26:59.564 -07 000000438 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:26:59.564 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:26:59.564 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 331 ms to get response, and 345 ms overall
17-03-18 04:26:59.564 -07 000000585 INF: FPGA: 'ZDACW 38520' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:26:59.564 -07 000000561 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:26:59.564 -07 000000561 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:26:59.564 -07 000000561 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:26:59.564 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:26:59.564 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 341 ms to get response, and 348 ms overall
17-03-18 04:26:59.564 -07 000000438 INF: FPGA: Recv ZDACR 38520
17-03-18 04:26:59.574 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:26:59.574 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:26:59.574 -07 000000585 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 04:26:59.584 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:26:59.784 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:26:59.784 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 221 ms overall
17-03-18 04:26:59.944 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 04:26:59.944 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:26:59.994 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:26:59.994 -07 000000585 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:27:00.004 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:00.004 -07 000000561 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:00.004 -07 000000561 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:27:00.004 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-18 04:27:00.954 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:00.954 -07 000000438 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:27:00.964 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:00.964 -07 000000561 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:00.984 -07 000000561 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:00.984 -07 000000561 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:27:00.984 -07 000000561 INF: Y Motor: Moved to 64.0566 after 1772 ms (table move)
17-03-18 04:27:00.994 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176333 mm (DAC = 38520)
17-03-18 04:27:00.994 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:00.994 -07 000000561 INF: FPGA: Recv ZSGSRD 36737
17-03-18 04:27:01.004 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.004 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.004 -07 000000438 INF: FPGA: Recv ZSGSRD 36742
17-03-18 04:27:01.014 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.014 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.014 -07 000000455 INF: FPGA: Recv ZSGSRD 36740
17-03-18 04:27:01.024 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.024 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.024 -07 000000438 INF: FPGA: Recv ZSGSRD 36741
17-03-18 04:27:01.034 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.034 -07 000000561 INF: FPGA: Recv ZSGSRD 36743
17-03-18 04:27:01.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.044 -07 000000455 INF: FPGA: Recv ZSGSRD 36739
17-03-18 04:27:01.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.054 -07 000000585 INF: FPGA: Recv ZSGSRD 36734
17-03-18 04:27:01.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.064 -07 000000438 INF: FPGA: Recv ZSGSRD 36734
17-03-18 04:27:01.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.074 -07 000000455 INF: FPGA: Recv ZSGSRD 36735
17-03-18 04:27:01.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:01.084 -07 000000561 INF: FPGA: Recv ZSGSRD 36731
17-03-18 04:27:01.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.094 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:01.094 -07 000000438 INF: FPGA: Recv ZPIEZORD 32851
17-03-18 04:27:01.104 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.104 -07 000000626 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.6 V.
17-03-18 04:27:01.104 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36738 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36743 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:27:01.104 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36738, posNoise = 5, negNoise = 7
17-03-18 04:27:01.104 -07 000000626 INF: Z Motor: After move to -0.176333, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:01.104 -07 000000626 INF: Z Motor: Settle wait time = 1435 ms, measure time = 110 ms (allowed 150 ms), total time = 1545 ms
17-03-18 04:27:01.104 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:01.144 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1926 ms
17-03-18 04:27:01.144 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:01.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:01.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:01.144 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:01.144 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:01.144 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:01.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:01.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:01.144 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:01.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:01.154 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:01.154 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:27:01.154 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:27:01.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:01.204 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:01.504 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:01.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:01.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:01.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:27:01.544 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:01.544 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:01.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:27:01.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:27:01.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:01.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:01.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:27:01.644 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:01.644 -07 000000455 INF: Autofocus start
17-03-18 04:27:01.644 -07 000000455 INF: MeasureProfile start
17-03-18 04:27:01.644 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:01.654 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:01.654 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:01.654 -07 000000455 INF: MeasureProfile done
17-03-18 04:27:01.654 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:27:01.654 -07 000000455 INF: Autofocus finished
17-03-18 04:27:01.674 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:01.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:01.854 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:01.854 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:01.854 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176336057675149. ----------
17-03-18 04:27:01.854 -07 000000610 INF: Cycle	125	Tile	6	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:01.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37017, sync = True, waitForSettling = True)
17-03-18 04:27:01.864 -07 000000610 INF: Z Motor: Moving to -0.169453 mm, started at -0.176336 mm, distance = 6.88 um
17-03-18 04:27:01.864 -07 000000610 INF: FPGA: Xmit ZDACW 37017\n [Z Motor]
17-03-18 04:27:01.864 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:27:01.874 -07 000000610 INF: FPGA: 'ZDACW 37017' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:01.874 -07 000000611 INF: FPGA: Recv ZDACR 37017
17-03-18 04:27:01.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:01.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:02.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.034 -07 000000626 INF: FPGA: Recv ZSGSRD 35669
17-03-18 04:27:02.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:02.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.044 -07 000000626 INF: FPGA: Recv ZSGSRD 35668
17-03-18 04:27:02.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:27:02.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.054 -07 000000611 INF: FPGA: Recv ZSGSRD 35668
17-03-18 04:27:02.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.064 -07 000000501 INF: FPGA: Recv ZSGSRD 35670
17-03-18 04:27:02.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.074 -07 000000585 INF: FPGA: Recv ZSGSRD 35667
17-03-18 04:27:02.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.084 -07 000000561 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:27:02.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.094 -07 000000455 INF: FPGA: Recv ZSGSRD 35668
17-03-18 04:27:02.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.104 -07 000000438 INF: FPGA: Recv ZSGSRD 35671
17-03-18 04:27:02.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.114 -07 000000608 INF: FPGA: Recv ZSGSRD 35669
17-03-18 04:27:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:02.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35666
17-03-18 04:27:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:02.134 -07 000000455 INF: FPGA: Recv ZPIEZORD 31416
17-03-18 04:27:02.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:02.144 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.4 V.
17-03-18 04:27:02.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35668 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35665 (-168.6 uncal um), Max = 35671 (-168.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:27:02.144 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35668, posNoise = 3, negNoise = 3
17-03-18 04:27:02.144 -07 000000610 INF: Z Motor: After move to -0.169453, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:02.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:27:02.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:02.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:02.144 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:02.144 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:02.144 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:02.144 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:02.144 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:02.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:02.144 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:27:02.144 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:02.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:02.144 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:02.154 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:02.154 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:02.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:02.154 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:02.164 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:27:02.164 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:27:02.164 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:27:02.164 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:27:02.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37194 150\n [Camera]
17-03-18 04:27:02.364 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:02.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 616
17-03-18 04:27:02.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 616
17-03-18 04:27:02.784 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:02.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 616
17-03-18 04:27:02.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 616
17-03-18 04:27:02.794 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:02.794 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:02.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:02.794 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:02.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:27:02.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37194 806
17-03-18 04:27:03.064 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.000345,
17-03-18 04:27:03.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:03.184 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:27:03.184 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:27:03.184 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:03.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:27:03.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:27:03.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:03.194 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:03.194 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:27:03.194 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:03.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:27:03.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:03.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:03.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:03.334 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:03.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:03.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:03.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:03.334 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:03.334 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:03.334 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:03.524 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:03.524 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:03.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37194 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-18 04:27:03.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:03.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169462150683465. ------
17-03-18 04:27:03.524 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:03.524 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17586 mm
17-03-18 04:27:03.524 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:03.524 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:27:03.524 -07 000000626 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:27:03.534 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:03.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:27:03.724 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:27:03.724 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:03.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:27:03.724 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:27:03.724 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:03.724 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:03.724 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:03.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:27:03.734 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:27:03.744 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38417, sync = True, waitForSettling = False)
17-03-18 04:27:03.744 -07 000000501 INF: Z Motor: Moving to -0.175862 mm, started at -0.169462 mm, distance = -6.40 um
17-03-18 04:27:03.744 -07 000000501 INF: FPGA: Xmit ZDACW 38417\n [Z Motor]
17-03-18 04:27:03.744 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:03.744 -07 000000608 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:27:03.744 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 212 ms overall
17-03-18 04:27:03.744 -07 000000626 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:03.744 -07 000000626 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:03.744 -07 000000626 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:27:03.744 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 211 ms to get response, and 215 ms overall
17-03-18 04:27:03.744 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:27:03.754 -07 000000501 INF: FPGA: 'ZDACW 38417' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:27:03.754 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:03.764 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:03.774 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:03.774 -07 000000608 INF: FPGA: Recv ZDACR 38417
17-03-18 04:27:03.784 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:03.784 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:27:03.954 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:03.954 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 04:27:04.134 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:27:04.134 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:27:04.184 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:04.194 -07 000000501 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:27:04.194 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:04.194 -07 000000626 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:04.194 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:27:04.194 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.116 mm/sec
17-03-18 04:27:05.144 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:05.144 -07 000000608 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:27:05.154 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:05.154 -07 000000626 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:05.184 -07 000000626 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:05.184 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:27:05.184 -07 000000626 INF: Y Motor: Moved to 64.8784 after 1653 ms (table move)
17-03-18 04:27:05.184 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175862 mm (DAC = 38417)
17-03-18 04:27:05.184 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.184 -07 000000501 INF: FPGA: Recv ZSGSRD 36664
17-03-18 04:27:05.194 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:05.194 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.194 -07 000000608 INF: FPGA: Recv ZSGSRD 36662
17-03-18 04:27:05.204 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.204 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.204 -07 000000608 INF: FPGA: Recv ZSGSRD 36666
17-03-18 04:27:05.214 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.214 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.214 -07 000000455 INF: FPGA: Recv ZSGSRD 36666
17-03-18 04:27:05.224 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.224 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.224 -07 000000501 INF: FPGA: Recv ZSGSRD 36670
17-03-18 04:27:05.234 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.234 -07 000000626 INF: FPGA: Recv ZSGSRD 36661
17-03-18 04:27:05.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.244 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.244 -07 000000501 INF: FPGA: Recv ZSGSRD 36663
17-03-18 04:27:05.254 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.254 -07 000000608 INF: FPGA: Recv ZSGSRD 36662
17-03-18 04:27:05.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.264 -07 000000501 INF: FPGA: Recv ZSGSRD 36661
17-03-18 04:27:05.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:05.274 -07 000000455 INF: FPGA: Recv ZSGSRD 36664
17-03-18 04:27:05.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.284 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:05.284 -07 000000608 INF: FPGA: Recv ZPIEZORD 32715
17-03-18 04:27:05.294 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:05.294 -07 000000561 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.7 V.
17-03-18 04:27:05.294 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36664 (-175.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36661 (-175.0 uncal um), Max = 36670 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:27:05.294 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 6, negNoise = 3
17-03-18 04:27:05.294 -07 000000561 INF: Z Motor: After move to -0.175862, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:05.294 -07 000000561 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-18 04:27:05.294 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:05.344 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1813 ms
17-03-18 04:27:05.344 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:05.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:05.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:05.344 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:05.344 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:05.344 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:05.344 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:05.344 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:27:05.344 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:05.354 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:05.354 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:05.354 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:05.354 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:27:05.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:05.404 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:05.704 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:05.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:05.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:05.824 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:05.824 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:05.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:27:05.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 453 ms to get response, and 461 ms overall
17-03-18 04:27:05.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:27:05.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:05.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:27:05.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 232 ms.
17-03-18 04:27:06.024 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:06.024 -07 000000455 INF: Autofocus start
17-03-18 04:27:06.024 -07 000000455 INF: MeasureProfile start
17-03-18 04:27:06.024 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:06.034 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:06.034 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:06.034 -07 000000455 INF: MeasureProfile done
17-03-18 04:27:06.034 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:27:06.034 -07 000000455 INF: Autofocus finished
17-03-18 04:27:06.234 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:06.234 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:27:06.244 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175860665976659. ----------
17-03-18 04:27:06.244 -07 000000610 INF: Cycle	125	Tile	7	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:06.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36932, sync = True, waitForSettling = True)
17-03-18 04:27:06.244 -07 000000610 INF: Z Motor: Moving to -0.169064 mm, started at -0.175861 mm, distance = 6.80 um
17-03-18 04:27:06.244 -07 000000610 INF: FPGA: Xmit ZDACW 36932\n [Z Motor]
17-03-18 04:27:06.244 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:27:06.254 -07 000000610 INF: FPGA: 'ZDACW 36932' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:06.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:06.254 -07 000000501 INF: FPGA: Recv ZDACR 36932
17-03-18 04:27:06.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.414 -07 000000455 INF: FPGA: Recv ZSGSRD 35603
17-03-18 04:27:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:06.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.424 -07 000000561 INF: FPGA: Recv ZSGSRD 35611
17-03-18 04:27:06.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.434 -07 000000455 INF: FPGA: Recv ZSGSRD 35606
17-03-18 04:27:06.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.444 -07 000000462 INF: FPGA: Recv ZSGSRD 35608
17-03-18 04:27:06.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35609
17-03-18 04:27:06.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.464 -07 000000462 INF: FPGA: Recv ZSGSRD 35608
17-03-18 04:27:06.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.474 -07 000000455 INF: FPGA: Recv ZSGSRD 35610
17-03-18 04:27:06.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35604
17-03-18 04:27:06.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.494 -07 000000561 INF: FPGA: Recv ZSGSRD 35604
17-03-18 04:27:06.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:06.504 -07 000000474 INF: FPGA: Recv ZSGSRD 35607
17-03-18 04:27:06.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:06.514 -07 000000474 INF: FPGA: Recv ZPIEZORD 31340
17-03-18 04:27:06.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:06.524 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.4 V.
17-03-18 04:27:06.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35608 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35603 (-168.2 uncal um), Max = 35611 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:06.524 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 4, negNoise = 4
17-03-18 04:27:06.524 -07 000000610 INF: Z Motor: After move to -0.169064, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:06.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:27:06.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:06.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:06.524 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:06.524 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:06.524 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:06.524 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:06.524 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:06.524 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:06.524 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:06.524 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:06.524 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:06.524 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:06.534 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:27:06.534 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:06.534 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:27:06.534 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:06.554 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:27:06.554 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:27:06.554 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:27:06.554 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:27:06.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37108 150\n [Camera]
17-03-18 04:27:06.674 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:06.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:06.754 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:07.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:07.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:07.174 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:07.174 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:07.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:07.174 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:07.184 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:07.184 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 04:27:07.184 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:07.184 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:07.364 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37108 806
17-03-18 04:27:07.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:07.574 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:27:07.574 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:27:07.574 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:07.574 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:07.574 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:27:07.584 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:27:07.584 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:27:07.584 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:07.584 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:07.594 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:27:07.714 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:07.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:07.714 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:07.724 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:07.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:07.724 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:07.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:07.724 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:07.724 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:07.724 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:07.904 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:07.914 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:07.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37108 150' command took 2 ms to send, 1350 ms to get response, and 1358 ms overall
17-03-18 04:27:07.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:07.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169070273742817. ------
17-03-18 04:27:07.914 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17562 mm
17-03-18 04:27:07.914 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:07.914 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:07.924 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:27:07.924 -07 000000455 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:27:07.924 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38363, sync = True, waitForSettling = False)
17-03-18 04:27:07.924 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:07.924 -07 000000561 INF: Z Motor: Moving to -0.175615 mm, started at -0.169070 mm, distance = -6.54 um
17-03-18 04:27:07.924 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:07.924 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:27:07.924 -07 000000487 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:27:07.934 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:07.934 -07 000000455 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:07.934 -07 000000455 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:07.934 -07 000000455 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:27:07.934 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:07.944 -07 000000561 INF: FPGA: Xmit ZDACW 38363\n [Z Motor]
17-03-18 04:27:07.944 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:27:07.954 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:07.954 -07 000000561 INF: FPGA: 'ZDACW 38363' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:07.964 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:07.964 -07 000000501 INF: FPGA: Recv ZDACR 38363
17-03-18 04:27:07.974 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:27:07.974 -07 000000561 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:27:08.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:27:08.124 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:27:08.124 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:08.124 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:27:08.124 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:27:08.124 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:08.124 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:08.124 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:27:08.124 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:08.134 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:27:08.134 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:08.134 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 215 ms overall
17-03-18 04:27:08.324 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:27:08.324 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:27:08.374 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:08.384 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:27:08.384 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:27:08.384 -07 000000455 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:08.384 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:27:08.384 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 04:27:08.444 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.008536,
17-03-18 04:27:09.334 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:09.334 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:27:09.344 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.344 -07 000000455 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:09.374 -07 000000455 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:09.374 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:09.374 -07 000000455 INF: Y Motor: Moved to 65.7134 after 1456 ms (table move)
17-03-18 04:27:09.384 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175615 mm (DAC = 38363)
17-03-18 04:27:09.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.384 -07 000000487 INF: FPGA: Recv ZSGSRD 36627
17-03-18 04:27:09.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:27:09.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36634
17-03-18 04:27:09.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.404 -07 000000487 INF: FPGA: Recv ZSGSRD 36629
17-03-18 04:27:09.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.414 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.414 -07 000000487 INF: FPGA: Recv ZSGSRD 36626
17-03-18 04:27:09.424 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.424 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.424 -07 000000608 INF: FPGA: Recv ZSGSRD 36623
17-03-18 04:27:09.434 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.434 -07 000000487 INF: FPGA: Recv ZSGSRD 36621
17-03-18 04:27:09.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.444 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.444 -07 000000626 INF: FPGA: Recv ZSGSRD 36625
17-03-18 04:27:09.454 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.454 -07 000000487 INF: FPGA: Recv ZSGSRD 36632
17-03-18 04:27:09.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.464 -07 000000626 INF: FPGA: Recv ZSGSRD 36635
17-03-18 04:27:09.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:09.474 -07 000000608 INF: FPGA: Recv ZSGSRD 36633
17-03-18 04:27:09.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.484 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:09.484 -07 000000626 INF: FPGA: Recv ZPIEZORD 32697
17-03-18 04:27:09.494 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:09.494 -07 000000462 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.7 V.
17-03-18 04:27:09.494 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36628 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36628 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36621 (-174.7 uncal um), Max = 36635 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:27:09.494 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36628, posNoise = 7, negNoise = 7
17-03-18 04:27:09.494 -07 000000462 INF: Z Motor: After move to -0.175615, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:09.494 -07 000000462 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:27:09.494 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:09.544 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:27:09.544 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:09.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:09.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:09.544 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:09.544 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:09.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:09.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:09.544 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:09.544 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:09.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:09.554 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:09.554 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:09.554 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:27:09.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:09.604 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:09.904 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:09.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:09.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:09.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-18 04:27:09.944 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:09.944 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:09.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:27:10.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 04:27:10.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:10.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:27:10.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 04:27:10.044 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:10.044 -07 000000561 INF: Autofocus start
17-03-18 04:27:10.044 -07 000000561 INF: MeasureProfile start
17-03-18 04:27:10.044 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:10.054 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:10.054 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:10.054 -07 000000561 INF: MeasureProfile done
17-03-18 04:27:10.054 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:27:10.054 -07 000000561 INF: Autofocus finished
17-03-18 04:27:10.254 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:10.254 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:10.254 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175629394339555. ----------
17-03-18 04:27:10.264 -07 000000610 INF: Cycle	125	Tile	8	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:10.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36878, sync = True, waitForSettling = True)
17-03-18 04:27:10.264 -07 000000610 INF: Z Motor: Moving to -0.168817 mm, started at -0.175629 mm, distance = 6.81 um
17-03-18 04:27:10.264 -07 000000610 INF: FPGA: Xmit ZDACW 36878\n [Z Motor]
17-03-18 04:27:10.264 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:27:10.274 -07 000000610 INF: FPGA: 'ZDACW 36878' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:10.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:10.274 -07 000000608 INF: FPGA: Recv ZDACR 36878
17-03-18 04:27:10.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:10.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.434 -07 000000561 INF: FPGA: Recv ZSGSRD 35568
17-03-18 04:27:10.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:10.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.444 -07 000000608 INF: FPGA: Recv ZSGSRD 35570
17-03-18 04:27:10.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.454 -07 000000561 INF: FPGA: Recv ZSGSRD 35563
17-03-18 04:27:10.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35571
17-03-18 04:27:10.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.474 -07 000000611 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:27:10.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.484 -07 000000608 INF: FPGA: Recv ZSGSRD 35567
17-03-18 04:27:10.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.494 -07 000000611 INF: FPGA: Recv ZSGSRD 35570
17-03-18 04:27:10.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.504 -07 000000438 INF: FPGA: Recv ZSGSRD 35570
17-03-18 04:27:10.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.514 -07 000000561 INF: FPGA: Recv ZSGSRD 35570
17-03-18 04:27:10.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:10.524 -07 000000608 INF: FPGA: Recv ZSGSRD 35566
17-03-18 04:27:10.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:10.534 -07 000000561 INF: FPGA: Recv ZPIEZORD 31284
17-03-18 04:27:10.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:10.544 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.4 V.
17-03-18 04:27:10.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35569 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35563 (-167.9 uncal um), Max = 35573 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:27:10.544 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35569, posNoise = 4, negNoise = 6
17-03-18 04:27:10.544 -07 000000610 INF: Z Motor: After move to -0.168817, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:10.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:27:10.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:10.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:10.544 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:10.544 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:10.544 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:10.544 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:10.544 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:10.544 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:10.544 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:10.544 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:10.544 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:10.544 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:10.554 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:10.554 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:10.554 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:10.554 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:10.564 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:27:10.564 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:27:10.564 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:27:10.564 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:27:10.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37055 150\n [Camera]
17-03-18 04:27:10.764 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:11.184 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:11.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:11.194 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:11.194 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:11.194 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:27:11.194 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:11.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:11.194 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:11.304 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:11.304 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:27:11.384 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37055 807
17-03-18 04:27:11.534 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:11.574 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:27:11.574 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:27:11.574 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:11.574 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:11.574 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:27:11.674 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:11.684 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:27:11.684 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:27:11.684 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:11.684 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:27:11.694 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 04:27:11.734 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:11.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:11.734 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:11.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:11.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:11.734 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:11.744 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:11.744 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:27:11.744 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:11.744 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:11.924 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:27:11.924 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:11.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37055 150' command took 2 ms to send, 1346 ms to get response, and 1358 ms overall
17-03-18 04:27:11.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:11.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.16882615368143. ------
17-03-18 04:27:11.934 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17533 mm
17-03-18 04:27:11.934 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:11.934 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:11.934 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:27:11.934 -07 000000585 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:27:11.934 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:11.934 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38302, sync = True, waitForSettling = False)
17-03-18 04:27:11.934 -07 000000462 INF: Z Motor: Moving to -0.175335 mm, started at -0.168826 mm, distance = -6.51 um
17-03-18 04:27:11.944 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:11.944 -07 000000462 INF: FPGA: Xmit ZDACW 38302\n [Z Motor]
17-03-18 04:27:11.944 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:27:11.954 -07 000000462 INF: FPGA: 'ZDACW 38302' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:27:11.954 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:11.954 -07 000000561 INF: FPGA: Recv ZDACR 38302
17-03-18 04:27:11.964 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:11.964 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:11.964 -07 000000462 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 04:27:11.964 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:27:11.974 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:27:11.974 -07 000000585 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:11.974 -07 000000585 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:11.974 -07 000000585 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:27:11.974 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:11.984 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:12.144 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:27:12.144 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:27:12.144 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:12.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:27:12.144 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:27:12.144 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:12.144 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:12.144 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:27:12.144 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:12.154 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:27:12.174 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:12.174 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-18 04:27:12.354 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:27:12.354 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:27:12.404 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:12.404 -07 000000455 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:27:12.414 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:12.414 -07 000000585 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:12.414 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:27:12.414 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 04:27:13.364 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:13.364 -07 000000608 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:27:13.374 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.374 -07 000000585 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:13.404 -07 000000585 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:13.404 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:13.404 -07 000000585 INF: Y Motor: Moved to 66.5386 after 1465 ms (table move)
17-03-18 04:27:13.404 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175335 mm (DAC = 38302)
17-03-18 04:27:13.404 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.404 -07 000000462 INF: FPGA: Recv ZSGSRD 36584
17-03-18 04:27:13.414 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:13.414 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.414 -07 000000608 INF: FPGA: Recv ZSGSRD 36593
17-03-18 04:27:13.424 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.424 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.424 -07 000000585 INF: FPGA: Recv ZSGSRD 36588
17-03-18 04:27:13.434 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.434 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.434 -07 000000462 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:27:13.444 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.444 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.444 -07 000000585 INF: FPGA: Recv ZSGSRD 36578
17-03-18 04:27:13.454 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.454 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.454 -07 000000585 INF: FPGA: Recv ZSGSRD 36580
17-03-18 04:27:13.464 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.464 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.464 -07 000000608 INF: FPGA: Recv ZSGSRD 36584
17-03-18 04:27:13.474 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.474 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.474 -07 000000585 INF: FPGA: Recv ZSGSRD 36577
17-03-18 04:27:13.484 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.494 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.494 -07 000000462 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:27:13.504 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:27:13.504 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:13.504 -07 000000585 INF: FPGA: Recv ZSGSRD 36586
17-03-18 04:27:13.514 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.514 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:13.514 -07 000000462 INF: FPGA: Recv ZPIEZORD 32657
17-03-18 04:27:13.524 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:13.524 -07 000000611 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.7 V.
17-03-18 04:27:13.524 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36584 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36585 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36577 (-174.4 uncal um), Max = 36593 (-174.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:27:13.524 -07 000000611 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36584, posNoise = 9, negNoise = 7
17-03-18 04:27:13.524 -07 000000611 INF: Z Motor: After move to -0.175335, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:13.524 -07 000000611 INF: Z Motor: Settle wait time = 1468 ms, measure time = 114 ms (allowed 150 ms), total time = 1582 ms
17-03-18 04:27:13.524 -07 000000611 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:13.564 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:27:13.564 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:13.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:13.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:13.564 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:13.564 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:13.564 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:13.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:13.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:13.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:13.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:13.574 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:13.574 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:13.574 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:27:13.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:13.624 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:13.804 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.011254,
17-03-18 04:27:13.924 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:13.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:13.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:13.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:27:13.964 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:13.964 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:13.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:27:14.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:27:14.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:14.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:14.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:27:14.064 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:14.064 -07 000000455 INF: Autofocus start
17-03-18 04:27:14.064 -07 000000455 INF: MeasureProfile start
17-03-18 04:27:14.064 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:14.074 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:14.074 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:14.084 -07 000000455 INF: MeasureProfile done
17-03-18 04:27:14.084 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:27:14.084 -07 000000455 INF: Autofocus finished
17-03-18 04:27:14.274 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:14.274 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:14.274 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175346729005318. ----------
17-03-18 04:27:14.274 -07 000000610 INF: Cycle	125	Tile	9	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:14.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36817, sync = True, waitForSettling = True)
17-03-18 04:27:14.284 -07 000000610 INF: Z Motor: Moving to -0.168537 mm, started at -0.175347 mm, distance = 6.81 um
17-03-18 04:27:14.284 -07 000000610 INF: FPGA: Xmit ZDACW 36817\n [Z Motor]
17-03-18 04:27:14.284 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:27:14.294 -07 000000610 INF: FPGA: 'ZDACW 36817' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:14.294 -07 000000444 INF: FPGA: Recv ZDACR 36817
17-03-18 04:27:14.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.454 -07 000000611 INF: FPGA: Recv ZSGSRD 35534
17-03-18 04:27:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.464 -07 000000611 INF: FPGA: Recv ZSGSRD 35528
17-03-18 04:27:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.474 -07 000000462 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:27:14.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.484 -07 000000611 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:27:14.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.494 -07 000000608 INF: FPGA: Recv ZSGSRD 35530
17-03-18 04:27:14.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.504 -07 000000455 INF: FPGA: Recv ZSGSRD 35535
17-03-18 04:27:14.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.514 -07 000000461 INF: FPGA: Recv ZSGSRD 35526
17-03-18 04:27:14.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.524 -07 000000611 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:27:14.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.534 -07 000000585 INF: FPGA: Recv ZSGSRD 35534
17-03-18 04:27:14.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:14.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35529
17-03-18 04:27:14.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:14.554 -07 000000462 INF: FPGA: Recv ZPIEZORD 31252
17-03-18 04:27:14.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:14.564 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-18 04:27:14.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.8 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35518 (-167.6 uncal um), Max = 35535 (-167.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:27:14.564 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 7, negNoise = 10
17-03-18 04:27:14.564 -07 000000610 INF: Z Motor: After move to -0.168537, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:14.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 04:27:14.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:14.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:14.574 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:14.574 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:14.574 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:14.574 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:14.574 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:14.574 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:14.574 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:27:14.574 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:14.584 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 04:27:14.584 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:14.584 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:14.584 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:14.584 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:14.584 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:14.594 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:27:14.594 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:27:14.594 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:27:14.594 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:27:14.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36993 150\n [Camera]
17-03-18 04:27:14.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:15.224 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:15.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:15.224 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:15.224 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:15.224 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:15.224 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:15.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:15.224 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:15.224 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:15.224 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:27:15.414 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36993 806
17-03-18 04:27:15.564 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:15.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:27:15.614 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:27:15.614 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:15.624 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:15.624 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:27:15.624 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:27:15.624 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:27:15.624 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:15.624 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:15.634 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:27:15.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:15.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:15.764 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:15.884 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:15.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:15.884 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:15.884 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:15.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:15.894 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:15.894 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:27:15.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:15.954 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:15.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36993 150' command took 2 ms to send, 1347 ms to get response, and 1357 ms overall
17-03-18 04:27:15.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:15.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168562760983618. ------
17-03-18 04:27:15.964 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:15.964 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17540 mm
17-03-18 04:27:15.964 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:15.964 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:27:15.964 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 04:27:15.964 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:15.964 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38316, sync = True, waitForSettling = False)
17-03-18 04:27:15.964 -07 000000461 INF: Z Motor: Moving to -0.175399 mm, started at -0.168563 mm, distance = -6.84 um
17-03-18 04:27:15.974 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:15.974 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:15.974 -07 000000611 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:27:15.984 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:27:15.984 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:15.984 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:15.984 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:27:15.984 -07 000000461 INF: FPGA: Xmit ZDACW 38316\n [Z Motor]
17-03-18 04:27:15.984 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:27:15.994 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:15.994 -07 000000461 INF: FPGA: 'ZDACW 38316' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:27:16.004 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:16.014 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:16.014 -07 000000444 INF: FPGA: Recv ZDACR 38316
17-03-18 04:27:16.024 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:16.024 -07 000000461 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:27:16.194 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:16.194 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:27:16.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:27:16.284 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:27:16.284 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:16.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:27:16.284 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:27:16.284 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:16.294 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:16.294 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 04:27:16.294 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:16.294 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:27:16.374 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:27:16.374 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:27:16.424 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:16.424 -07 000000561 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:27:16.434 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:16.434 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:16.434 -07 000000501 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:27:16.434 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:27:16.674 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:16.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:17.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:17.384 -07 000000611 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:27:17.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:17.394 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:17.414 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:17.424 -07 000000501 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:17.424 -07 000000501 INF: Y Motor: Moved to 67.3716 after 1453 ms (table move)
17-03-18 04:27:17.424 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175399 mm (DAC = 38316)
17-03-18 04:27:17.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.424 -07 000000611 INF: FPGA: Recv ZSGSRD 36597
17-03-18 04:27:17.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:17.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.434 -07 000000561 INF: FPGA: Recv ZSGSRD 36598
17-03-18 04:27:17.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.444 -07 000000626 INF: FPGA: Recv ZSGSRD 36597
17-03-18 04:27:17.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.454 -07 000000561 INF: FPGA: Recv ZSGSRD 36599
17-03-18 04:27:17.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.464 -07 000000626 INF: FPGA: Recv ZSGSRD 36590
17-03-18 04:27:17.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.474 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36590
17-03-18 04:27:17.484 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.484 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.484 -07 000000501 INF: FPGA: Recv ZSGSRD 36590
17-03-18 04:27:17.494 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.494 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.494 -07 000000626 INF: FPGA: Recv ZSGSRD 36585
17-03-18 04:27:17.504 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.504 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.504 -07 000000501 INF: FPGA: Recv ZSGSRD 36589
17-03-18 04:27:17.514 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.514 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:17.514 -07 000000626 INF: FPGA: Recv ZSGSRD 36594
17-03-18 04:27:17.524 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.524 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:17.524 -07 000000501 INF: FPGA: Recv ZPIEZORD 32661
17-03-18 04:27:17.534 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:17.534 -07 000000455 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.7 V.
17-03-18 04:27:17.534 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36593 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36592 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36585 (-174.5 uncal um), Max = 36599 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:27:17.534 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36593, posNoise = 6, negNoise = 8
17-03-18 04:27:17.534 -07 000000455 INF: Z Motor: After move to -0.175399, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:17.534 -07 000000455 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:27:17.534 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:17.584 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:27:17.584 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:17.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:17.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:17.584 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:17.584 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:17.584 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:17.584 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:17.584 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:17.584 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:17.594 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:17.594 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:17.604 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:27:17.604 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:27:17.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:17.654 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:17.954 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:17.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:17.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:17.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1082280040, 0x0, 559484976) start.
17-03-18 04:27:17.994 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:17.994 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:17.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:27:18.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1082280040, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:27:18.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:18.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:18.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:27:18.094 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:18.094 -07 000000501 INF: Autofocus start
17-03-18 04:27:18.094 -07 000000501 INF: MeasureProfile start
17-03-18 04:27:18.094 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:18.104 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:18.104 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:18.104 -07 000000501 INF: MeasureProfile done
17-03-18 04:27:18.104 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:27:18.104 -07 000000501 INF: Autofocus finished
17-03-18 04:27:18.304 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:18.304 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:27:18.314 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175404546914594. ----------
17-03-18 04:27:18.314 -07 000000610 INF: Cycle	125	Tile	10	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:18.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36813, sync = True, waitForSettling = True)
17-03-18 04:27:18.314 -07 000000610 INF: Z Motor: Moving to -0.168519 mm, started at -0.175405 mm, distance = 6.89 um
17-03-18 04:27:18.314 -07 000000610 INF: FPGA: Xmit ZDACW 36813\n [Z Motor]
17-03-18 04:27:18.314 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:27:18.324 -07 000000610 INF: FPGA: 'ZDACW 36813' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:27:18.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:18.324 -07 000000611 INF: FPGA: Recv ZDACR 36813
17-03-18 04:27:18.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:27:18.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:18.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35527
17-03-18 04:27:18.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:18.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.494 -07 000000487 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:27:18.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35519
17-03-18 04:27:18.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.514 -07 000000626 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:27:18.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.524 -07 000000455 INF: FPGA: Recv ZSGSRD 35523
17-03-18 04:27:18.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.534 -07 000000487 INF: FPGA: Recv ZSGSRD 35523
17-03-18 04:27:18.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:27:18.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.554 -07 000000626 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:27:18.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35525
17-03-18 04:27:18.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:18.574 -07 000000561 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:27:18.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:18.584 -07 000000626 INF: FPGA: Recv ZPIEZORD 31252
17-03-18 04:27:18.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:18.594 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.4 V.
17-03-18 04:27:18.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35522 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35523 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35517 (-167.6 uncal um), Max = 35527 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:27:18.594 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35522, posNoise = 5, negNoise = 5
17-03-18 04:27:18.594 -07 000000610 INF: Z Motor: After move to -0.168519, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:18.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:27:18.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:18.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:18.594 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:18.594 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:18.594 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:18.594 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:18.594 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:27:18.594 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:18.594 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:18.594 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:18.594 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:18.594 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:18.594 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:27:18.604 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:18.604 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:18.604 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:18.604 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:27:18.604 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:27:18.614 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:27:18.614 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:27:18.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36989 150\n [Camera]
17-03-18 04:27:18.814 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:19.174 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.024884,
17-03-18 04:27:19.234 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:19.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:19.234 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:19.234 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:19.234 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:19.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:19.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:19.234 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:19.234 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:19.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:19.424 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36989 806
17-03-18 04:27:19.574 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:19.614 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:27:19.614 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:27:19.614 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:19.614 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:27:19.614 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:27:19.614 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:19.614 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:19.614 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:27:19.624 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:19.624 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:27:19.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:19.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:19.774 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:19.784 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:19.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:19.784 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:19.784 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:19.784 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:19.784 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:19.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:27:19.964 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:19.974 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:19.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36989 150' command took 2 ms to send, 1350 ms to get response, and 1357 ms overall
17-03-18 04:27:19.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:19.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168524215710768. ------
17-03-18 04:27:19.974 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:19.974 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17477 mm
17-03-18 04:27:19.974 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:19.974 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:27:19.974 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 04:27:19.974 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:19.974 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38178, sync = True, waitForSettling = False)
17-03-18 04:27:19.974 -07 000000455 INF: Z Motor: Moving to -0.174768 mm, started at -0.168524 mm, distance = -6.24 um
17-03-18 04:27:19.984 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:19.984 -07 000000455 INF: FPGA: Xmit ZDACW 38178\n [Z Motor]
17-03-18 04:27:19.984 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:27:19.994 -07 000000455 INF: FPGA: 'ZDACW 38178' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:19.994 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:19.994 -07 000000585 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:27:20.004 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:20.004 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:27:20.004 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:20.004 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:20.004 -07 000000561 INF: Y Motor: Moving 1346 steps-23
17-03-18 04:27:20.014 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:20.014 -07 000000585 INF: FPGA: Recv ZDACR 38178
17-03-18 04:27:20.024 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:20.024 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:20.024 -07 000000455 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:27:20.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:27:20.174 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:27:20.174 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:20.174 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:27:20.174 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:27:20.174 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:20.174 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:20.174 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:27:20.174 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:20.184 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:27:20.204 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:20.204 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:27:20.394 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:27:20.394 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:27:20.444 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:20.444 -07 000000461 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:27:20.454 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:20.454 -07 000000561 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:20.454 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:27:20.454 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.129 mm/sec
17-03-18 04:27:21.404 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:21.404 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:27:21.414 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:21.414 -07 000000561 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:21.444 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:21.444 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:27:21.444 -07 000000561 INF: Y Motor: Moved to 68.2046 after 1461 ms (table move)
17-03-18 04:27:21.444 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174768 mm (DAC = 38178)
17-03-18 04:27:21.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.444 -07 000000585 INF: FPGA: Recv ZSGSRD 36506
17-03-18 04:27:21.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:21.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.454 -07 000000626 INF: FPGA: Recv ZSGSRD 36501
17-03-18 04:27:21.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.464 -07 000000501 INF: FPGA: Recv ZSGSRD 36493
17-03-18 04:27:21.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.474 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36492
17-03-18 04:27:21.484 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.484 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.484 -07 000000501 INF: FPGA: Recv ZSGSRD 36498
17-03-18 04:27:21.494 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.494 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.494 -07 000000585 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:27:21.504 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.504 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.504 -07 000000626 INF: FPGA: Recv ZSGSRD 36492
17-03-18 04:27:21.514 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.514 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.514 -07 000000461 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:27:21.524 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:27:21.524 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.524 -07 000000585 INF: FPGA: Recv ZSGSRD 36497
17-03-18 04:27:21.534 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.534 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:21.534 -07 000000585 INF: FPGA: Recv ZSGSRD 36494
17-03-18 04:27:21.544 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.544 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:21.544 -07 000000585 INF: FPGA: Recv ZPIEZORD 32551
17-03-18 04:27:21.554 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:21.554 -07 000000474 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.826 V. Piezo Error = -8.7 V.
17-03-18 04:27:21.554 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36496 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36494 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36491 (-173.9 uncal um), Max = 36506 (-174.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:27:21.554 -07 000000474 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36496, posNoise = 10, negNoise = 5
17-03-18 04:27:21.554 -07 000000474 INF: Z Motor: After move to -0.174768, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:21.554 -07 000000474 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:27:21.554 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:21.604 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:27:21.604 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:21.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:21.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:21.604 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:21.604 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:21.604 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:21.604 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:21.604 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:27:21.604 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:21.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:21.614 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:21.614 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:27:21.614 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:27:21.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:21.664 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:21.674 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:21.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:21.964 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:21.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:21.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:21.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:22.004 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:22.004 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:22.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:27:22.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:27:22.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:22.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:27:22.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:27:22.104 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:22.104 -07 000000501 INF: Autofocus start
17-03-18 04:27:22.104 -07 000000501 INF: MeasureProfile start
17-03-18 04:27:22.104 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:22.114 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:22.114 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:22.114 -07 000000501 INF: MeasureProfile done
17-03-18 04:27:22.114 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:27:22.124 -07 000000501 INF: Autofocus finished
17-03-18 04:27:22.314 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:22.314 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:27:22.314 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174781398336843. ----------
17-03-18 04:27:22.324 -07 000000610 INF: Cycle	125	Tile	11	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:22.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36729, sync = True, waitForSettling = True)
17-03-18 04:27:22.324 -07 000000610 INF: Z Motor: Moving to -0.168135 mm, started at -0.174781 mm, distance = 6.65 um
17-03-18 04:27:22.324 -07 000000610 INF: FPGA: Xmit ZDACW 36729\n [Z Motor]
17-03-18 04:27:22.324 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:27:22.334 -07 000000610 INF: FPGA: 'ZDACW 36729' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:27:22.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:22.334 -07 000000561 INF: FPGA: Recv ZDACR 36729
17-03-18 04:27:22.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:22.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.494 -07 000000461 INF: FPGA: Recv ZSGSRD 35463
17-03-18 04:27:22.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:22.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.504 -07 000000585 INF: FPGA: Recv ZSGSRD 35464
17-03-18 04:27:22.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.514 -07 000000461 INF: FPGA: Recv ZSGSRD 35464
17-03-18 04:27:22.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.524 -07 000000474 INF: FPGA: Recv ZSGSRD 35462
17-03-18 04:27:22.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.534 -07 000000561 INF: FPGA: Recv ZSGSRD 35462
17-03-18 04:27:22.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.544 -07 000000626 INF: FPGA: Recv ZSGSRD 35474
17-03-18 04:27:22.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.554 -07 000000585 INF: FPGA: Recv ZSGSRD 35465
17-03-18 04:27:22.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.564 -07 000000585 INF: FPGA: Recv ZSGSRD 35460
17-03-18 04:27:22.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.574 -07 000000474 INF: FPGA: Recv ZSGSRD 35462
17-03-18 04:27:22.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:22.584 -07 000000626 INF: FPGA: Recv ZSGSRD 35464
17-03-18 04:27:22.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:22.594 -07 000000561 INF: FPGA: Recv ZPIEZORD 31170
17-03-18 04:27:22.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:22.604 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.5 V.
17-03-18 04:27:22.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35460 (-167.3 uncal um), Max = 35474 (-167.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:22.604 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 10, negNoise = 4
17-03-18 04:27:22.604 -07 000000610 INF: Z Motor: After move to -0.168135, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:22.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:27:22.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:22.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:22.604 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:22.604 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:22.604 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:22.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:22.604 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:22.604 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:22.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:22.604 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:22.604 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:22.604 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:22.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:22.614 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:22.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 04:27:22.614 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:22.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:27:22.624 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:27:22.624 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:27:22.624 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:27:22.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36906 150\n [Camera]
17-03-18 04:27:22.824 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:23.244 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:23.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:23.244 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:23.244 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:23.244 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:23.244 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:23.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:23.244 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:23.244 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:23.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:23.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36906 806
17-03-18 04:27:23.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:23.634 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:27:23.634 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:27:23.634 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:23.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:27:23.644 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:27:23.644 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:23.644 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:23.644 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:27:23.644 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:23.654 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:27:23.794 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:23.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:23.794 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:23.904 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:23.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:23.904 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:23.904 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:23.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:23.914 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:23.914 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:27:23.984 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:27:23.984 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:23.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36906 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:27:23.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:23.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168151611406546. ------
17-03-18 04:27:23.994 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:23.994 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17473 mm
17-03-18 04:27:23.994 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:23.994 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:23.994 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:27:23.994 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 04:27:23.994 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38170, sync = True, waitForSettling = False)
17-03-18 04:27:23.994 -07 000000561 INF: Z Motor: Moving to -0.174731 mm, started at -0.168152 mm, distance = -6.58 um
17-03-18 04:27:24.004 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:24.004 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:24.004 -07 000000438 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:27:24.014 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:27:24.014 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:24.014 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:24.014 -07 000000444 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:27:24.014 -07 000000561 INF: FPGA: Xmit ZDACW 38170\n [Z Motor]
17-03-18 04:27:24.014 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:27:24.024 -07 000000561 INF: FPGA: 'ZDACW 38170' command took 3 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:27:24.024 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:24.034 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:24.044 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:24.044 -07 000000462 INF: FPGA: Recv ZDACR 38170
17-03-18 04:27:24.054 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:27:24.054 -07 000000561 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:27:24.224 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:24.224 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 228 ms overall
17-03-18 04:27:24.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:27:24.304 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:27:24.304 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:24.304 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:27:24.304 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:27:24.304 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:24.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:24.304 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:24.304 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 04:27:24.314 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:27:24.404 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:27:24.404 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:27:24.454 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:24.454 -07 000000608 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:27:24.464 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:24.464 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:24.464 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:27:24.464 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 04:27:24.544 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.989471,
17-03-18 04:27:25.414 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:25.414 -07 000000474 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:27:25.424 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.424 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:25.454 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:25.454 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:25.454 -07 000000444 INF: Y Motor: Moved to 69.0264 after 1456 ms (table move)
17-03-18 04:27:25.454 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174731 mm (DAC = 38170)
17-03-18 04:27:25.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.454 -07 000000611 INF: FPGA: Recv ZSGSRD 36499
17-03-18 04:27:25.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:25.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.464 -07 000000501 INF: FPGA: Recv ZSGSRD 36494
17-03-18 04:27:25.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.474 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36484
17-03-18 04:27:25.484 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.484 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.484 -07 000000501 INF: FPGA: Recv ZSGSRD 36488
17-03-18 04:27:25.494 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.494 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.494 -07 000000611 INF: FPGA: Recv ZSGSRD 36489
17-03-18 04:27:25.504 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.504 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.504 -07 000000608 INF: FPGA: Recv ZSGSRD 36487
17-03-18 04:27:25.514 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.514 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.514 -07 000000462 INF: FPGA: Recv ZSGSRD 36485
17-03-18 04:27:25.524 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.524 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.524 -07 000000444 INF: FPGA: Recv ZSGSRD 36485
17-03-18 04:27:25.534 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.534 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.534 -07 000000444 INF: FPGA: Recv ZSGSRD 36494
17-03-18 04:27:25.544 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.544 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:25.544 -07 000000474 INF: FPGA: Recv ZSGSRD 36494
17-03-18 04:27:25.554 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.554 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:25.554 -07 000000611 INF: FPGA: Recv ZPIEZORD 32580
17-03-18 04:27:25.564 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:25.564 -07 000000455 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.6 V.
17-03-18 04:27:25.564 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36490 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36488 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36484 (-173.8 uncal um), Max = 36499 (-173.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:27:25.564 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36490, posNoise = 9, negNoise = 6
17-03-18 04:27:25.564 -07 000000455 INF: Z Motor: After move to -0.174731, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:25.564 -07 000000455 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:27:25.564 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:25.614 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:27:25.614 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:25.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:25.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:25.614 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:25.614 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:25.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:25.614 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:25.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:27:25.614 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:25.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:25.624 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:25.624 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:25.624 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:27:25.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:25.674 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:25.974 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:25.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:25.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:25.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:26.014 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:26.014 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:26.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 04:27:26.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:27:26.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:26.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:26.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:27:26.114 -07 000000462 INF: Autofocus start
17-03-18 04:27:26.114 -07 000000462 INF: MeasureProfile start
17-03-18 04:27:26.114 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:26.114 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:26.124 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:26.124 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:26.124 -07 000000462 INF: MeasureProfile done
17-03-18 04:27:26.124 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:27:26.124 -07 000000462 INF: Autofocus finished
17-03-18 04:27:26.324 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:26.324 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:26.324 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174742853063992. ----------
17-03-18 04:27:26.334 -07 000000610 INF: Cycle	125	Tile	12	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:26.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36685, sync = True, waitForSettling = True)
17-03-18 04:27:26.334 -07 000000610 INF: Z Motor: Moving to -0.167933 mm, started at -0.174743 mm, distance = 6.81 um
17-03-18 04:27:26.334 -07 000000610 INF: FPGA: Xmit ZDACW 36685\n [Z Motor]
17-03-18 04:27:26.334 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:27:26.344 -07 000000610 INF: FPGA: 'ZDACW 36685' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:26.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:26.344 -07 000000611 INF: FPGA: Recv ZDACR 36685
17-03-18 04:27:26.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:26.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.504 -07 000000455 INF: FPGA: Recv ZSGSRD 35434
17-03-18 04:27:26.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:26.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.514 -07 000000611 INF: FPGA: Recv ZSGSRD 35430
17-03-18 04:27:26.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.524 -07 000000501 INF: FPGA: Recv ZSGSRD 35429
17-03-18 04:27:26.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.534 -07 000000462 INF: FPGA: Recv ZSGSRD 35432
17-03-18 04:27:26.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.544 -07 000000608 INF: FPGA: Recv ZSGSRD 35434
17-03-18 04:27:26.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.554 -07 000000455 INF: FPGA: Recv ZSGSRD 35427
17-03-18 04:27:26.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.564 -07 000000608 INF: FPGA: Recv ZSGSRD 35426
17-03-18 04:27:26.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.574 -07 000000444 INF: FPGA: Recv ZSGSRD 35432
17-03-18 04:27:26.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35428
17-03-18 04:27:26.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:26.594 -07 000000611 INF: FPGA: Recv ZSGSRD 35427
17-03-18 04:27:26.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:26.604 -07 000000462 INF: FPGA: Recv ZPIEZORD 31163
17-03-18 04:27:26.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:26.614 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.4 V.
17-03-18 04:27:26.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35430 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35430 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35426 (-167.0 uncal um), Max = 35434 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:26.614 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35430, posNoise = 4, negNoise = 4
17-03-18 04:27:26.614 -07 000000610 INF: Z Motor: After move to -0.167933, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:26.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:27:26.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:26.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:26.614 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:26.614 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:26.614 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:26.614 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:26.614 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:26.614 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:26.614 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:27:26.614 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:26.614 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:26.614 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:26.624 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:26.624 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:26.624 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:26.624 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:26.634 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:27:26.634 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:27:26.634 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:27:26.634 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:27:26.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36861 150\n [Camera]
17-03-18 04:27:26.674 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:26.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:27.254 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:27.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:27.254 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:27.254 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:27.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:27.254 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:27.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:27.254 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:27.254 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:27.254 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:27.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36861 806
17-03-18 04:27:27.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:27.654 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:27:27.654 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:27:27.654 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:27.654 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:27:27.654 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:27:27.654 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:27.664 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:27.664 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:27:27.774 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-18 04:27:27.774 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 04:27:27.804 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:27.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:27.804 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:27.804 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:27.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:27.804 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:27.804 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:27.804 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:27.804 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:27.804 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:27:27.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:27:27.994 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:27.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36861 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-18 04:27:27.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:27.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167933188193726. ------
17-03-18 04:27:28.004 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:28.004 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17437 mm
17-03-18 04:27:28.004 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:28.004 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:27:28.004 -07 000000611 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:27:28.004 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:28.004 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38092, sync = True, waitForSettling = False)
17-03-18 04:27:28.004 -07 000000455 INF: Z Motor: Moving to -0.174374 mm, started at -0.167933 mm, distance = -6.44 um
17-03-18 04:27:28.014 -07 000000455 INF: FPGA: Xmit ZDACW 38092\n [Z Motor]
17-03-18 04:27:28.014 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:27:28.014 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:27:28.024 -07 000000455 INF: FPGA: 'ZDACW 38092' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:27:28.024 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:28.024 -07 000000626 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:27:28.034 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:28.034 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:27:28.034 -07 000000611 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:28.034 -07 000000611 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:28.034 -07 000000611 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:27:28.044 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:28.044 -07 000000626 INF: FPGA: Recv ZDACR 38092
17-03-18 04:27:28.054 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:28.054 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:28.054 -07 000000455 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:27:28.204 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:27:28.204 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:27:28.204 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:28.204 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:27:28.204 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:27:28.204 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:28.204 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:28.204 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:28.204 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:27:28.214 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:27:28.234 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:28.234 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:27:28.424 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:27:28.424 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:27:28.474 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:28.474 -07 000000444 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:27:28.484 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:28.484 -07 000000611 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:28.484 -07 000000611 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:27:28.484 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 04:27:29.434 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:29.434 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:27:29.444 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:29.444 -07 000000611 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:29.474 -07 000000611 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:29.474 -07 000000611 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:29.474 -07 000000611 INF: Y Motor: Moved to 69.8628 after 1466 ms (table move)
17-03-18 04:27:29.474 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174374 mm (DAC = 38092)
17-03-18 04:27:29.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.474 -07 000000487 INF: FPGA: Recv ZSGSRD 36442
17-03-18 04:27:29.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:29.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.484 -07 000000444 INF: FPGA: Recv ZSGSRD 36430
17-03-18 04:27:29.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.494 -07 000000591 INF: FPGA: Recv ZSGSRD 36434
17-03-18 04:27:29.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.504 -07 000000487 INF: FPGA: Recv ZSGSRD 36434
17-03-18 04:27:29.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.514 -07 000000462 INF: FPGA: Recv ZSGSRD 36437
17-03-18 04:27:29.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.524 -07 000000474 INF: FPGA: Recv ZSGSRD 36425
17-03-18 04:27:29.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.534 -07 000000461 INF: FPGA: Recv ZSGSRD 36432
17-03-18 04:27:29.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.544 -07 000000561 INF: FPGA: Recv ZSGSRD 36431
17-03-18 04:27:29.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.554 -07 000000474 INF: FPGA: Recv ZSGSRD 36434
17-03-18 04:27:29.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:29.564 -07 000000461 INF: FPGA: Recv ZSGSRD 36440
17-03-18 04:27:29.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.574 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:29.574 -07 000000501 INF: FPGA: Recv ZPIEZORD 32494
17-03-18 04:27:29.584 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:29.584 -07 000000608 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.7 V.
17-03-18 04:27:29.584 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36434 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36434 (-173.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36425 (-173.4 uncal um), Max = 36442 (-173.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:27:29.584 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36434, posNoise = 8, negNoise = 9
17-03-18 04:27:29.584 -07 000000608 INF: Z Motor: After move to -0.174374, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:29.584 -07 000000608 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:27:29.584 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:29.634 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 04:27:29.634 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:29.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:29.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:29.634 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:29.634 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:29.634 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:29.634 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:29.634 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:27:29.634 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:29.644 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:29.644 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:29.644 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:29.644 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:27:29.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:29.694 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:29.924 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.970374,
17-03-18 04:27:29.994 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:29.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:29.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:29.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:30.034 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:30.034 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:30.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:27:30.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:27:30.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:30.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:30.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:27:30.134 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:30.134 -07 000000591 INF: Autofocus start
17-03-18 04:27:30.134 -07 000000591 INF: MeasureProfile start
17-03-18 04:27:30.134 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:30.144 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:30.144 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:30.144 -07 000000591 INF: MeasureProfile done
17-03-18 04:27:30.144 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:27:30.144 -07 000000591 INF: Autofocus finished
17-03-18 04:27:30.344 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:30.344 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:30.344 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174383097184054. ----------
17-03-18 04:27:30.354 -07 000000610 INF: Cycle	125	Tile	13	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:30.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36606, sync = True, waitForSettling = True)
17-03-18 04:27:30.354 -07 000000610 INF: Z Motor: Moving to -0.167572 mm, started at -0.174383 mm, distance = 6.81 um
17-03-18 04:27:30.354 -07 000000610 INF: FPGA: Xmit ZDACW 36606\n [Z Motor]
17-03-18 04:27:30.354 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:27:30.364 -07 000000610 INF: FPGA: 'ZDACW 36606' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:30.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:30.364 -07 000000608 INF: FPGA: Recv ZDACR 36606
17-03-18 04:27:30.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:30.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.524 -07 000000455 INF: FPGA: Recv ZSGSRD 35373
17-03-18 04:27:30.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:30.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.534 -07 000000438 INF: FPGA: Recv ZSGSRD 35375
17-03-18 04:27:30.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.544 -07 000000501 INF: FPGA: Recv ZSGSRD 35373
17-03-18 04:27:30.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.554 -07 000000438 INF: FPGA: Recv ZSGSRD 35375
17-03-18 04:27:30.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.564 -07 000000501 INF: FPGA: Recv ZSGSRD 35375
17-03-18 04:27:30.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.574 -07 000000626 INF: FPGA: Recv ZSGSRD 35370
17-03-18 04:27:30.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.584 -07 000000438 INF: FPGA: Recv ZSGSRD 35377
17-03-18 04:27:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35372
17-03-18 04:27:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.604 -07 000000438 INF: FPGA: Recv ZSGSRD 35373
17-03-18 04:27:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:30.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35372
17-03-18 04:27:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:30.624 -07 000000501 INF: FPGA: Recv ZPIEZORD 31069
17-03-18 04:27:30.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:30.634 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.5 V.
17-03-18 04:27:30.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35374 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35373 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35370 (-166.7 uncal um), Max = 35377 (-166.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:30.634 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35374, posNoise = 3, negNoise = 4
17-03-18 04:27:30.634 -07 000000610 INF: Z Motor: After move to -0.167572, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:30.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:27:30.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:30.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:30.634 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:30.634 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:30.634 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:30.634 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:30.634 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:30.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:30.634 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:27:30.634 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:30.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:30.634 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:30.644 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:30.644 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:30.644 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:30.644 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:30.654 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:27:30.654 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:27:30.654 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:27:30.654 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:27:30.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36783 150\n [Camera]
17-03-18 04:27:30.854 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:31.274 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:31.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:31.274 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:31.274 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:31.274 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:31.274 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:31.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:31.284 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:31.284 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:31.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:27:31.464 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36783 806
17-03-18 04:27:31.614 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:31.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:27:31.664 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:27:31.664 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:31.664 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:27:31.664 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:27:31.664 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:31.664 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:31.664 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:27:31.664 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:31.674 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:31.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:31.674 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:27:31.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:31.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:31.824 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:31.824 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:31.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:27:31.824 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:31.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:31.824 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:31.824 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:31.824 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:27:32.014 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:32.014 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:32.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36783 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-18 04:27:32.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:32.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167573432313787. ------
17-03-18 04:27:32.014 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17404 mm
17-03-18 04:27:32.014 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:32.014 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:32.024 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:27:32.024 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:27:32.024 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:32.024 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 04:27:32.024 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:32.024 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38019, sync = True, waitForSettling = False)
17-03-18 04:27:32.024 -07 000000501 INF: Z Motor: Moving to -0.174040 mm, started at -0.167573 mm, distance = -6.47 um
17-03-18 04:27:32.024 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:27:32.034 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:27:32.034 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:32.034 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:32.034 -07 000000561 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:27:32.034 -07 000000501 INF: FPGA: Xmit ZDACW 38019\n [Z Motor]
17-03-18 04:27:32.034 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:27:32.044 -07 000000501 INF: FPGA: 'ZDACW 38019' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:27:32.044 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:32.054 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:32.064 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:32.064 -07 000000611 INF: FPGA: Recv ZDACR 38019
17-03-18 04:27:32.074 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:32.074 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:27:32.224 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:27:32.224 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:27:32.224 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:32.224 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:27:32.224 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:27:32.224 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:32.224 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:32.234 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:27:32.234 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:27:32.234 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:27:32.244 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:32.244 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 04:27:32.424 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:27:32.424 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:27:32.474 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:32.474 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:27:32.484 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:32.484 -07 000000561 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:32.484 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:27:32.484 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 04:27:33.434 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:33.434 -07 000000501 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:27:33.444 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:33.444 -07 000000561 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:33.474 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:33.474 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:33.474 -07 000000561 INF: Y Motor: Moved to 70.6880 after 1448 ms (table move)
17-03-18 04:27:33.474 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174040 mm (DAC = 38019)
17-03-18 04:27:33.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.474 -07 000000626 INF: FPGA: Recv ZSGSRD 36383
17-03-18 04:27:33.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:33.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.484 -07 000000474 INF: FPGA: Recv ZSGSRD 36385
17-03-18 04:27:33.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.494 -07 000000626 INF: FPGA: Recv ZSGSRD 36379
17-03-18 04:27:33.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.504 -07 000000438 INF: FPGA: Recv ZSGSRD 36380
17-03-18 04:27:33.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.514 -07 000000626 INF: FPGA: Recv ZSGSRD 36379
17-03-18 04:27:33.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.524 -07 000000501 INF: FPGA: Recv ZSGSRD 36378
17-03-18 04:27:33.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.534 -07 000000626 INF: FPGA: Recv ZSGSRD 36378
17-03-18 04:27:33.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.544 -07 000000501 INF: FPGA: Recv ZSGSRD 36375
17-03-18 04:27:33.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.554 -07 000000626 INF: FPGA: Recv ZSGSRD 36380
17-03-18 04:27:33.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:33.564 -07 000000501 INF: FPGA: Recv ZSGSRD 36384
17-03-18 04:27:33.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.574 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:33.574 -07 000000626 INF: FPGA: Recv ZPIEZORD 32456
17-03-18 04:27:33.584 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:33.584 -07 000000591 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.7 V.
17-03-18 04:27:33.584 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36380 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36380 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36375 (-173.1 uncal um), Max = 36385 (-173.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:27:33.584 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36380, posNoise = 5, negNoise = 5
17-03-18 04:27:33.584 -07 000000591 INF: Z Motor: After move to -0.174040, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:33.584 -07 000000591 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:27:33.584 -07 000000591 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:33.634 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:27:33.634 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:33.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:33.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:33.634 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:33.634 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:33.644 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:33.644 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:33.644 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:27:33.644 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:33.644 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:33.644 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:33.654 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:33.654 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:27:33.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:33.694 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:33.994 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:33.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:33.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:33.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 04:27:34.034 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:34.034 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:34.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:27:34.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:27:34.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:34.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:34.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:27:34.134 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:34.134 -07 000000455 INF: Autofocus start
17-03-18 04:27:34.134 -07 000000455 INF: MeasureProfile start
17-03-18 04:27:34.134 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:34.144 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:34.144 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:34.144 -07 000000455 INF: MeasureProfile done
17-03-18 04:27:34.144 -07 000000455 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:27:34.144 -07 000000455 INF: Autofocus finished
17-03-18 04:27:34.344 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:34.344 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:34.344 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174036189728399. ----------
17-03-18 04:27:34.354 -07 000000610 INF: Cycle	125	Tile	14	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:34.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36499, sync = True, waitForSettling = True)
17-03-18 04:27:34.354 -07 000000610 INF: Z Motor: Moving to -0.167082 mm, started at -0.174036 mm, distance = 6.95 um
17-03-18 04:27:34.354 -07 000000610 INF: FPGA: Xmit ZDACW 36499\n [Z Motor]
17-03-18 04:27:34.354 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:27:34.364 -07 000000610 INF: FPGA: 'ZDACW 36499' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:27:34.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:34.364 -07 000000455 INF: FPGA: Recv ZDACR 36499
17-03-18 04:27:34.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.524 -07 000000561 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:27:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.534 -07 000000438 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:27:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.544 -07 000000626 INF: FPGA: Recv ZSGSRD 35296
17-03-18 04:27:34.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.554 -07 000000501 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:27:34.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:27:34.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.574 -07 000000591 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:27:34.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.584 -07 000000501 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:27:34.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.594 -07 000000611 INF: FPGA: Recv ZSGSRD 35300
17-03-18 04:27:34.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.604 -07 000000474 INF: FPGA: Recv ZSGSRD 35297
17-03-18 04:27:34.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:34.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:27:34.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:34.624 -07 000000444 INF: FPGA: Recv ZPIEZORD 31014
17-03-18 04:27:34.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:34.634 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.4 V.
17-03-18 04:27:34.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35300 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35296 (-166.2 uncal um), Max = 35302 (-166.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:34.634 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35300, posNoise = 2, negNoise = 4
17-03-18 04:27:34.634 -07 000000610 INF: Z Motor: After move to -0.167082, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:34.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:27:34.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:34.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:34.634 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:34.634 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:34.634 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:34.634 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:34.634 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:34.634 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:34.634 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:34.634 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:34.634 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:34.634 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:34.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:34.644 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:34.644 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:34.644 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:34.654 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:27:34.654 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:27:34.654 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:27:34.654 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:27:34.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36675 150\n [Camera]
17-03-18 04:27:34.854 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:35.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:35.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:35.284 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:35.284 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:35.284 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:27:35.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:35.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:35.404 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.978563,
17-03-18 04:27:35.404 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:35.414 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:35.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:27:35.474 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36675 806
17-03-18 04:27:35.624 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:35.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 516 ms.
17-03-18 04:27:35.804 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 04:27:35.804 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:35.804 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:27:35.804 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:27:35.804 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:35.804 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:35.804 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 04:27:35.804 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:35.814 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:27:35.824 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:35.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:35.824 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:35.824 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:35.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:35.834 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:35.834 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:35.834 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:35.834 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:35.834 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:27:36.014 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:27:36.014 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:36.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36675 150' command took 2 ms to send, 1348 ms to get response, and 1357 ms overall
17-03-18 04:27:36.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:36.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167098040615297. ------
17-03-18 04:27:36.024 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17376 mm
17-03-18 04:27:36.024 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:36.024 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:36.024 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:27:36.024 -07 000000585 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:27:36.024 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37958, sync = True, waitForSettling = False)
17-03-18 04:27:36.024 -07 000000487 INF: Z Motor: Moving to -0.173761 mm, started at -0.167098 mm, distance = -6.66 um
17-03-18 04:27:36.024 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:36.034 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:36.034 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:36.034 -07 000000608 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:27:36.044 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:27:36.044 -07 000000585 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:36.044 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:36.044 -07 000000585 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:36.044 -07 000000585 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:27:36.054 -07 000000487 INF: FPGA: Xmit ZDACW 37958\n [Z Motor]
17-03-18 04:27:36.054 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:27:36.064 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:36.064 -07 000000487 INF: FPGA: 'ZDACW 37958' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 04:27:36.074 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:36.074 -07 000000608 INF: FPGA: Recv ZDACR 37958
17-03-18 04:27:36.084 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:27:36.084 -07 000000487 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:27:36.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:27:36.234 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:27:36.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:36.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:27:36.234 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:27:36.234 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:36.234 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:36.234 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:36.234 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:27:36.244 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:36.244 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:27:36.244 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:27:36.434 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:27:36.434 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:27:36.484 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:36.484 -07 000000455 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:27:36.494 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:36.494 -07 000000585 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:36.494 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:27:36.494 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 04:27:36.674 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:36.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:37.444 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:37.444 -07 000000455 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:27:37.454 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:37.454 -07 000000585 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:37.484 -07 000000585 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:37.484 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:37.484 -07 000000585 INF: Y Motor: Moved to 71.5186 after 1452 ms (table move)
17-03-18 04:27:37.484 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173761 mm (DAC = 37958)
17-03-18 04:27:37.484 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.484 -07 000000591 INF: FPGA: Recv ZSGSRD 36341
17-03-18 04:27:37.494 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:37.494 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.494 -07 000000585 INF: FPGA: Recv ZSGSRD 36343
17-03-18 04:27:37.504 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.504 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.504 -07 000000561 INF: FPGA: Recv ZSGSRD 36348
17-03-18 04:27:37.514 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.514 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.514 -07 000000608 INF: FPGA: Recv ZSGSRD 36338
17-03-18 04:27:37.524 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.524 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.524 -07 000000487 INF: FPGA: Recv ZSGSRD 36343
17-03-18 04:27:37.534 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.534 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.534 -07 000000585 INF: FPGA: Recv ZSGSRD 36342
17-03-18 04:27:37.544 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.544 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.544 -07 000000487 INF: FPGA: Recv ZSGSRD 36328
17-03-18 04:27:37.554 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.554 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.554 -07 000000591 INF: FPGA: Recv ZSGSRD 36333
17-03-18 04:27:37.564 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.564 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.564 -07 000000487 INF: FPGA: Recv ZSGSRD 36335
17-03-18 04:27:37.574 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.574 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:37.574 -07 000000591 INF: FPGA: Recv ZSGSRD 36340
17-03-18 04:27:37.584 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.584 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:37.584 -07 000000487 INF: FPGA: Recv ZPIEZORD 32388
17-03-18 04:27:37.594 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:37.594 -07 000000611 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.7 V.
17-03-18 04:27:37.594 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36339 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36340 (-172.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36328 (-172.8 uncal um), Max = 36348 (-172.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:27:37.594 -07 000000611 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36339, posNoise = 9, negNoise = 11
17-03-18 04:27:37.594 -07 000000611 INF: Z Motor: After move to -0.173761, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:37.594 -07 000000611 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:27:37.594 -07 000000611 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:37.644 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:27:37.644 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:37.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:37.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:37.644 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:37.644 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:37.644 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:37.644 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:37.644 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:37.644 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:37.654 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:37.654 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:37.654 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:37.654 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:27:37.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:37.704 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:38.004 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:38.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:38.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:38.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:38.044 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:38.044 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:38.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:27:38.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:27:38.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:38.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:38.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:27:38.144 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:38.144 -07 000000455 INF: Autofocus start
17-03-18 04:27:38.144 -07 000000455 INF: MeasureProfile start
17-03-18 04:27:38.144 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:38.154 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:38.154 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:38.154 -07 000000455 INF: MeasureProfile done
17-03-18 04:27:38.154 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:27:38.154 -07 000000455 INF: Autofocus finished
17-03-18 04:27:38.354 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:38.354 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:27:38.354 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173772797030586. ----------
17-03-18 04:27:38.354 -07 000000610 INF: Cycle	125	Tile	15	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:38.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36455, sync = True, waitForSettling = True)
17-03-18 04:27:38.364 -07 000000610 INF: Z Motor: Moving to -0.166880 mm, started at -0.173773 mm, distance = 6.89 um
17-03-18 04:27:38.364 -07 000000610 INF: FPGA: Xmit ZDACW 36455\n [Z Motor]
17-03-18 04:27:38.364 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:27:38.374 -07 000000610 INF: FPGA: 'ZDACW 36455' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:38.374 -07 000000455 INF: FPGA: Recv ZDACR 36455
17-03-18 04:27:38.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:38.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.534 -07 000000611 INF: FPGA: Recv ZSGSRD 35271
17-03-18 04:27:38.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:38.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.544 -07 000000561 INF: FPGA: Recv ZSGSRD 35273
17-03-18 04:27:38.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.554 -07 000000461 INF: FPGA: Recv ZSGSRD 35262
17-03-18 04:27:38.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.564 -07 000000585 INF: FPGA: Recv ZSGSRD 35266
17-03-18 04:27:38.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.574 -07 000000487 INF: FPGA: Recv ZSGSRD 35265
17-03-18 04:27:38.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35272
17-03-18 04:27:38.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.594 -07 000000611 INF: FPGA: Recv ZSGSRD 35264
17-03-18 04:27:38.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.604 -07 000000561 INF: FPGA: Recv ZSGSRD 35272
17-03-18 04:27:38.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:27:38.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.614 -07 000000461 INF: FPGA: Recv ZSGSRD 35268
17-03-18 04:27:38.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:38.624 -07 000000608 INF: FPGA: Recv ZSGSRD 35269
17-03-18 04:27:38.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:38.634 -07 000000585 INF: FPGA: Recv ZPIEZORD 30945
17-03-18 04:27:38.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:38.644 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.5 V.
17-03-18 04:27:38.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35268 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35268 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35262 (-166.0 uncal um), Max = 35273 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:27:38.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35268, posNoise = 5, negNoise = 6
17-03-18 04:27:38.644 -07 000000610 INF: Z Motor: After move to -0.166880, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:38.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:27:38.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:38.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:38.644 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:38.644 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:38.644 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:38.644 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:38.644 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:38.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:38.644 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:38.644 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:38.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:38.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:38.644 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:27:38.644 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:38.654 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:27:38.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:38.654 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:27:38.654 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:27:38.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:27:38.654 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:27:38.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36631 150\n [Camera]
17-03-18 04:27:38.864 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:39.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:39.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:39.284 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:39.284 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:39.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:27:39.294 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:39.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:39.294 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:39.434 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:39.434 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:27:39.474 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36631 806
17-03-18 04:27:39.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:39.684 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:27:39.684 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:27:39.684 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:39.684 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:39.684 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:27:39.824 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:27:39.824 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:27:39.824 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:39.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:39.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:39.834 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:39.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:39.834 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:39.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:39.834 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:39.834 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:27:39.834 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:39.834 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-18 04:27:39.834 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:39.834 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:27:40.024 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:40.024 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:40.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36631 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-18 04:27:40.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:40.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.16689246582676. ------
17-03-18 04:27:40.024 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:40.024 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17332 mm
17-03-18 04:27:40.024 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:40.034 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:40.034 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:40.034 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:40.034 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:27:40.034 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:27:40.034 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37861, sync = True, waitForSettling = False)
17-03-18 04:27:40.034 -07 000000461 INF: Z Motor: Moving to -0.173317 mm, started at -0.166892 mm, distance = -6.42 um
17-03-18 04:27:40.044 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:40.044 -07 000000585 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:27:40.054 -07 000000461 INF: FPGA: Xmit ZDACW 37861\n [Z Motor]
17-03-18 04:27:40.054 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:27:40.054 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:40.054 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:40.054 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:27:40.054 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:27:40.064 -07 000000461 INF: FPGA: 'ZDACW 37861' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:27:40.064 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:40.064 -07 000000474 INF: FPGA: Recv ZDACR 37861
17-03-18 04:27:40.074 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:40.074 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:40.074 -07 000000461 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:27:40.234 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:40.234 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:27:40.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:27:40.234 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:27:40.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:40.244 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:40.244 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:27:40.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:27:40.244 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:27:40.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:40.244 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:40.254 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:27:40.444 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:27:40.444 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:27:40.494 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:40.494 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:27:40.504 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:40.504 -07 000000626 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:40.504 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:27:40.504 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 04:27:40.774 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.983999,
17-03-18 04:27:41.454 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:41.454 -07 000000561 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:27:41.464 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.464 -07 000000626 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:41.494 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:41.494 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:41.494 -07 000000626 INF: Y Motor: Moved to 72.3491 after 1456 ms (table move)
17-03-18 04:27:41.494 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173317 mm (DAC = 37861)
17-03-18 04:27:41.494 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.494 -07 000000467 INF: FPGA: Recv ZSGSRD 36275
17-03-18 04:27:41.504 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:41.504 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.504 -07 000000626 INF: FPGA: Recv ZSGSRD 36273
17-03-18 04:27:41.514 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.514 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.514 -07 000000467 INF: FPGA: Recv ZSGSRD 36267
17-03-18 04:27:41.524 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.524 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.524 -07 000000585 INF: FPGA: Recv ZSGSRD 36274
17-03-18 04:27:41.534 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.534 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.534 -07 000000561 INF: FPGA: Recv ZSGSRD 36270
17-03-18 04:27:41.544 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.544 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.544 -07 000000585 INF: FPGA: Recv ZSGSRD 36270
17-03-18 04:27:41.554 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.554 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.554 -07 000000561 INF: FPGA: Recv ZSGSRD 36270
17-03-18 04:27:41.564 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.564 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.564 -07 000000455 INF: FPGA: Recv ZSGSRD 36266
17-03-18 04:27:41.574 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.574 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.574 -07 000000561 INF: FPGA: Recv ZSGSRD 36275
17-03-18 04:27:41.584 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.584 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:41.584 -07 000000455 INF: FPGA: Recv ZSGSRD 36272
17-03-18 04:27:41.594 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.594 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:41.594 -07 000000467 INF: FPGA: Recv ZPIEZORD 32302
17-03-18 04:27:41.604 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:41.604 -07 000000487 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.8 V.
17-03-18 04:27:41.604 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36271 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36271 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36266 (-172.4 uncal um), Max = 36275 (-172.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:27:41.604 -07 000000487 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36271, posNoise = 4, negNoise = 5
17-03-18 04:27:41.604 -07 000000487 INF: Z Motor: After move to -0.173317, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:41.604 -07 000000487 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:27:41.604 -07 000000487 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:41.654 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:27:41.654 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:41.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:41.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:41.654 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:41.654 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:41.654 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:41.654 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:41.654 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:27:41.654 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:41.664 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:41.664 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:41.664 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:41.664 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:27:41.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:41.674 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:41.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:41.714 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:42.014 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:42.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:42.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:42.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:42.054 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:42.054 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:42.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 376 ms to get response, and 386 ms overall
17-03-18 04:27:42.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:27:42.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:42.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:42.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:27:42.154 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:42.154 -07 000000467 INF: Autofocus start
17-03-18 04:27:42.154 -07 000000467 INF: MeasureProfile start
17-03-18 04:27:42.154 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:42.164 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:42.164 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:42.174 -07 000000467 INF: MeasureProfile done
17-03-18 04:27:42.174 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:27:42.174 -07 000000467 INF: Autofocus finished
17-03-18 04:27:42.364 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:42.364 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:42.364 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173335950604947. ----------
17-03-18 04:27:42.364 -07 000000610 INF: Cycle	125	Tile	16	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:42.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36394, sync = True, waitForSettling = True)
17-03-18 04:27:42.374 -07 000000610 INF: Z Motor: Moving to -0.166601 mm, started at -0.173336 mm, distance = 6.73 um
17-03-18 04:27:42.374 -07 000000610 INF: FPGA: Xmit ZDACW 36394\n [Z Motor]
17-03-18 04:27:42.374 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:27:42.384 -07 000000610 INF: FPGA: 'ZDACW 36394' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:42.384 -07 000000455 INF: FPGA: Recv ZDACR 36394
17-03-18 04:27:42.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.544 -07 000000467 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:27:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:42.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.554 -07 000000626 INF: FPGA: Recv ZSGSRD 35229
17-03-18 04:27:42.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35215
17-03-18 04:27:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.574 -07 000000626 INF: FPGA: Recv ZSGSRD 35221
17-03-18 04:27:42.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.584 -07 000000467 INF: FPGA: Recv ZSGSRD 35220
17-03-18 04:27:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.594 -07 000000608 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:27:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.604 -07 000000487 INF: FPGA: Recv ZSGSRD 35228
17-03-18 04:27:42.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:42.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.614 -07 000000585 INF: FPGA: Recv ZSGSRD 35217
17-03-18 04:27:42.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.624 -07 000000561 INF: FPGA: Recv ZSGSRD 35229
17-03-18 04:27:42.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:42.634 -07 000000455 INF: FPGA: Recv ZSGSRD 35222
17-03-18 04:27:42.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:42.644 -07 000000626 INF: FPGA: Recv ZPIEZORD 30911
17-03-18 04:27:42.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:42.654 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.5 V.
17-03-18 04:27:42.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35223 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35222 (-165.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35215 (-165.7 uncal um), Max = 35229 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:27:42.654 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35223, posNoise = 6, negNoise = 8
17-03-18 04:27:42.654 -07 000000610 INF: Z Motor: After move to -0.166601, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:42.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:27:42.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:42.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:42.654 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:42.654 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:42.654 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:42.654 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:42.654 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:42.654 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:42.654 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:27:42.654 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:42.654 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:42.654 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:42.654 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:42.654 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:42.664 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:27:42.664 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:42.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 19 ms.
17-03-18 04:27:42.674 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 04:27:42.684 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-18 04:27:42.684 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 04:27:42.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36571 150\n [Camera]
17-03-18 04:27:42.884 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:43.304 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:43.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:43.304 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:43.304 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:43.304 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:27:43.304 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:43.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:43.304 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:43.304 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:43.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:27:43.494 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36571 807
17-03-18 04:27:43.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:43.694 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:27:43.694 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:27:43.694 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:43.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:27:43.694 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:27:43.694 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:43.704 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:43.704 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:27:43.704 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:43.704 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:27:43.854 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:43.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:43.854 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:43.964 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:43.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:43.964 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:43.964 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:43.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:27:43.974 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:43.974 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:27:44.044 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:27:44.044 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:44.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36571 150' command took 2 ms to send, 1352 ms to get response, and 1358 ms overall
17-03-18 04:27:44.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:44.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166603376280381. ------
17-03-18 04:27:44.044 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:44.044 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17298 mm
17-03-18 04:27:44.044 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:44.054 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:27:44.054 -07 000000585 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:27:44.054 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37787, sync = True, waitForSettling = False)
17-03-18 04:27:44.054 -07 000000487 INF: Z Motor: Moving to -0.172978 mm, started at -0.166603 mm, distance = -6.37 um
17-03-18 04:27:44.054 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:44.054 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:44.054 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:44.054 -07 000000444 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:27:44.064 -07 000000585 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:44.064 -07 000000585 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:44.064 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:44.064 -07 000000585 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:44.064 -07 000000585 INF: Y Motor: Moving 1349 steps-28
17-03-18 04:27:44.074 -07 000000487 INF: FPGA: Xmit ZDACW 37787\n [Z Motor]
17-03-18 04:27:44.074 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:27:44.084 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:44.084 -07 000000487 INF: FPGA: 'ZDACW 37787' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:44.094 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:44.094 -07 000000461 INF: FPGA: Recv ZDACR 37787
17-03-18 04:27:44.104 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:27:44.104 -07 000000487 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:27:44.264 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:44.264 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 04:27:44.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:27:44.364 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:27:44.364 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:44.374 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:27:44.374 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:27:44.374 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:44.374 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:44.374 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:44.374 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 04:27:44.374 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:27:44.454 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:27:44.454 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:27:44.504 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:44.514 -07 000000461 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:27:44.514 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:44.514 -07 000000585 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:44.514 -07 000000585 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:27:44.514 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.157 mm/sec
17-03-18 04:27:45.464 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:45.464 -07 000000455 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:27:45.474 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:45.474 -07 000000585 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:45.494 -07 000000585 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:45.504 -07 000000585 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:27:45.504 -07 000000585 INF: Y Motor: Moved to 73.1758 after 1450 ms (table move)
17-03-18 04:27:45.504 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172978 mm (DAC = 37787)
17-03-18 04:27:45.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.504 -07 000000561 INF: FPGA: Recv ZSGSRD 36223
17-03-18 04:27:45.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:45.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.514 -07 000000585 INF: FPGA: Recv ZSGSRD 36210
17-03-18 04:27:45.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.524 -07 000000585 INF: FPGA: Recv ZSGSRD 36214
17-03-18 04:27:45.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.534 -07 000000455 INF: FPGA: Recv ZSGSRD 36224
17-03-18 04:27:45.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.544 -07 000000455 INF: FPGA: Recv ZSGSRD 36219
17-03-18 04:27:45.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.554 -07 000000444 INF: FPGA: Recv ZSGSRD 36217
17-03-18 04:27:45.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.564 -07 000000455 INF: FPGA: Recv ZSGSRD 36215
17-03-18 04:27:45.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.574 -07 000000501 INF: FPGA: Recv ZSGSRD 36214
17-03-18 04:27:45.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.584 -07 000000474 INF: FPGA: Recv ZSGSRD 36212
17-03-18 04:27:45.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:45.594 -07 000000444 INF: FPGA: Recv ZSGSRD 36217
17-03-18 04:27:45.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.604 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:45.604 -07 000000455 INF: FPGA: Recv ZPIEZORD 32253
17-03-18 04:27:45.614 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:45.614 -07 000000608 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.8 V.
17-03-18 04:27:45.614 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36216 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36216 (-172.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36210 (-172.1 uncal um), Max = 36224 (-172.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:27:45.614 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36216, posNoise = 8, negNoise = 6
17-03-18 04:27:45.614 -07 000000608 INF: Z Motor: After move to -0.172978, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:45.614 -07 000000608 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:27:45.614 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:45.664 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:27:45.664 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:45.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:45.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:45.664 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:45.664 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:45.664 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:45.664 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:45.664 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:27:45.664 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:45.674 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:45.674 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:45.674 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:45.674 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:27:45.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:45.724 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:46.024 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:46.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:46.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:46.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:46.064 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:46.064 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:46.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:27:46.144 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.969015,
17-03-18 04:27:46.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:27:46.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:46.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:46.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:27:46.164 -07 000000626 INF: Autofocus start
17-03-18 04:27:46.164 -07 000000626 INF: MeasureProfile start
17-03-18 04:27:46.174 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:46.174 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:46.174 -07 000000626 INF: MeasureProfile done
17-03-18 04:27:46.174 -07 000000626 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:27:46.174 -07 000000626 INF: Autofocus finished
17-03-18 04:27:46.184 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:27:46.194 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:46.394 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:46.394 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:27:46.394 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17298261893715. ----------
17-03-18 04:27:46.394 -07 000000610 INF: Cycle	125	Tile	17	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:46.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36319, sync = True, waitForSettling = True)
17-03-18 04:27:46.404 -07 000000610 INF: Z Motor: Moving to -0.166258 mm, started at -0.172983 mm, distance = 6.72 um
17-03-18 04:27:46.404 -07 000000610 INF: FPGA: Xmit ZDACW 36319\n [Z Motor]
17-03-18 04:27:46.414 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:27:46.414 -07 000000610 INF: FPGA: 'ZDACW 36319' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:27:46.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:46.414 -07 000000561 INF: FPGA: Recv ZDACR 36319
17-03-18 04:27:46.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:46.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.574 -07 000000444 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:27:46.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:46.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.584 -07 000000455 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:27:46.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.594 -07 000000608 INF: FPGA: Recv ZSGSRD 35172
17-03-18 04:27:46.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.604 -07 000000561 INF: FPGA: Recv ZSGSRD 35168
17-03-18 04:27:46.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.614 -07 000000585 INF: FPGA: Recv ZSGSRD 35173
17-03-18 04:27:46.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.624 -07 000000561 INF: FPGA: Recv ZSGSRD 35173
17-03-18 04:27:46.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.634 -07 000000608 INF: FPGA: Recv ZSGSRD 35174
17-03-18 04:27:46.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.644 -07 000000487 INF: FPGA: Recv ZSGSRD 35172
17-03-18 04:27:46.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.654 -07 000000608 INF: FPGA: Recv ZSGSRD 35167
17-03-18 04:27:46.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:46.664 -07 000000444 INF: FPGA: Recv ZSGSRD 35172
17-03-18 04:27:46.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:46.674 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:46.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:46.674 -07 000000561 INF: FPGA: Recv ZPIEZORD 30837
17-03-18 04:27:46.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:46.684 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.5 V.
17-03-18 04:27:46.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35171 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35172 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35167 (-165.4 uncal um), Max = 35174 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:46.684 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35171, posNoise = 3, negNoise = 4
17-03-18 04:27:46.684 -07 000000610 INF: Z Motor: After move to -0.166258, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:46.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 04:27:46.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:46.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:46.684 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:46.684 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:46.684 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:46.684 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:46.684 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:46.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:46.684 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:46.684 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:46.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:46.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:46.694 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:46.694 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:46.694 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:46.694 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:46.704 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:27:46.704 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:27:46.704 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:27:46.704 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:27:46.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36496 150\n [Camera]
17-03-18 04:27:46.904 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:47.324 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:47.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:47.324 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:47.324 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:47.324 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:27:47.324 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:47.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:47.324 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:47.324 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:47.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:27:47.514 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36496 806
17-03-18 04:27:47.664 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:47.714 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:27:47.714 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:27:47.714 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:47.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:27:47.724 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:27:47.724 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:47.724 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:27:47.724 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:27:47.724 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:47.734 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:27:47.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:47.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:47.864 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:47.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:47.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:47.984 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:47.984 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:47.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 04:27:47.984 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:47.984 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:27:48.064 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:48.064 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:48.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36496 150' command took 2 ms to send, 1351 ms to get response, and 1357 ms overall
17-03-18 04:27:48.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:48.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.16626931724901. ------
17-03-18 04:27:48.064 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:48.064 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17222 mm
17-03-18 04:27:48.064 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:48.064 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:27:48.064 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:27:48.064 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:48.064 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37621, sync = True, waitForSettling = False)
17-03-18 04:27:48.064 -07 000000455 INF: Z Motor: Moving to -0.172218 mm, started at -0.166269 mm, distance = -5.95 um
17-03-18 04:27:48.074 -07 000000455 INF: FPGA: Xmit ZDACW 37621\n [Z Motor]
17-03-18 04:27:48.074 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:27:48.074 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:27:48.084 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:48.084 -07 000000455 INF: FPGA: 'ZDACW 37621' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:48.084 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:27:48.094 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:48.094 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:27:48.094 -07 000000462 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:48.094 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:48.094 -07 000000462 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:27:48.104 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:48.104 -07 000000467 INF: FPGA: Recv ZDACR 37621
17-03-18 04:27:48.114 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:48.114 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:48.114 -07 000000455 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:27:48.294 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:48.294 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:27:48.384 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:27:48.384 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:27:48.384 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:48.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:27:48.384 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:27:48.384 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:48.384 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:48.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:48.384 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 04:27:48.394 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:27:48.494 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 04:27:48.494 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 04:27:48.534 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:48.534 -07 000000474 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:27:48.544 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:48.544 -07 000000462 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:48.544 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:27:48.544 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-18 04:27:49.494 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:49.494 -07 000000444 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:27:49.504 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:49.504 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:49.524 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:49.524 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:27:49.524 -07 000000462 INF: Y Motor: Moved to 74.0078 after 1455 ms (table move)
17-03-18 04:27:49.524 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172218 mm (DAC = 37621)
17-03-18 04:27:49.524 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.534 -07 000000474 INF: FPGA: Recv ZSGSRD 36096
17-03-18 04:27:49.534 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:27:49.534 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.534 -07 000000608 INF: FPGA: Recv ZSGSRD 36105
17-03-18 04:27:49.544 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.544 -07 000000585 INF: FPGA: Recv ZSGSRD 36103
17-03-18 04:27:49.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.554 -07 000000608 INF: FPGA: Recv ZSGSRD 36098
17-03-18 04:27:49.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.564 -07 000000474 INF: FPGA: Recv ZSGSRD 36100
17-03-18 04:27:49.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.574 -07 000000608 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:27:49.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.584 -07 000000462 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:27:49.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.594 -07 000000608 INF: FPGA: Recv ZSGSRD 36086
17-03-18 04:27:49.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.604 -07 000000487 INF: FPGA: Recv ZSGSRD 36098
17-03-18 04:27:49.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:49.614 -07 000000462 INF: FPGA: Recv ZSGSRD 36098
17-03-18 04:27:49.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.624 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:49.624 -07 000000487 INF: FPGA: Recv ZPIEZORD 32048
17-03-18 04:27:49.634 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:49.634 -07 000000561 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.9 V.
17-03-18 04:27:49.634 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36099 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36099 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36086 (-171.3 uncal um), Max = 36105 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 04:27:49.634 -07 000000561 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36099, posNoise = 6, negNoise = 13
17-03-18 04:27:49.634 -07 000000561 INF: Z Motor: After move to -0.172218, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:49.634 -07 000000561 INF: Z Motor: Settle wait time = 1457 ms, measure time = 103 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:27:49.634 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:49.684 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:27:49.684 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:49.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:49.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:49.694 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:49.694 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:49.694 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:49.694 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:49.694 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:49.694 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:49.694 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:49.694 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:49.704 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:27:49.704 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:27:49.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:49.754 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:50.054 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:50.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:50.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:50.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 04:27:50.094 -07 000000444 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:27:50.104 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:50.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 04:27:50.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:27:50.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:50.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:50.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:27:50.204 -07 000000626 INF: Autofocus start
17-03-18 04:27:50.204 -07 000000626 INF: MeasureProfile start
17-03-18 04:27:50.204 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:50.204 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:50.214 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:50.214 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:50.214 -07 000000626 INF: MeasureProfile done
17-03-18 04:27:50.214 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:27:50.214 -07 000000626 INF: Autofocus finished
17-03-18 04:27:50.414 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:50.414 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:50.414 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172230986116564. ----------
17-03-18 04:27:50.414 -07 000000610 INF: Cycle	125	Tile	18	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:50.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36136, sync = True, waitForSettling = True)
17-03-18 04:27:50.424 -07 000000610 INF: Z Motor: Moving to -0.165420 mm, started at -0.172231 mm, distance = 6.81 um
17-03-18 04:27:50.424 -07 000000610 INF: FPGA: Xmit ZDACW 36136\n [Z Motor]
17-03-18 04:27:50.424 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:27:50.434 -07 000000610 INF: FPGA: 'ZDACW 36136' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:50.434 -07 000000501 INF: FPGA: Recv ZDACR 36136
17-03-18 04:27:50.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:50.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.594 -07 000000608 INF: FPGA: Recv ZSGSRD 35043
17-03-18 04:27:50.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:50.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.604 -07 000000501 INF: FPGA: Recv ZSGSRD 35044
17-03-18 04:27:50.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35040
17-03-18 04:27:50.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.624 -07 000000608 INF: FPGA: Recv ZSGSRD 35045
17-03-18 04:27:50.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.634 -07 000000444 INF: FPGA: Recv ZSGSRD 35037
17-03-18 04:27:50.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.644 -07 000000608 INF: FPGA: Recv ZSGSRD 35043
17-03-18 04:27:50.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.654 -07 000000444 INF: FPGA: Recv ZSGSRD 35046
17-03-18 04:27:50.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.664 -07 000000608 INF: FPGA: Recv ZSGSRD 35039
17-03-18 04:27:50.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.674 -07 000000444 INF: FPGA: Recv ZSGSRD 35037
17-03-18 04:27:50.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:50.684 -07 000000608 INF: FPGA: Recv ZSGSRD 35040
17-03-18 04:27:50.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:50.694 -07 000000444 INF: FPGA: Recv ZPIEZORD 30693
17-03-18 04:27:50.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:50.704 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.514 V. Piezo Error = -9.6 V.
17-03-18 04:27:50.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35041 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35042 (-164.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35037 (-164.5 uncal um), Max = 35046 (-164.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:50.704 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35041, posNoise = 5, negNoise = 4
17-03-18 04:27:50.704 -07 000000610 INF: Z Motor: After move to -0.165420, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:50.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:27:50.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:50.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:50.704 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:50.704 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:50.704 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:50.704 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:50.704 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:50.704 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:50.704 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:50.704 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:50.704 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:50.704 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:50.704 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:50.704 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:50.714 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:50.714 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:50.714 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:27:50.714 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:27:50.714 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:27:50.714 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:27:50.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36313 150\n [Camera]
17-03-18 04:27:50.924 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:51.344 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:51.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:51.344 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:51.344 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:51.344 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:27:51.344 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:51.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:51.344 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:51.344 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:51.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:27:51.514 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.001704,
17-03-18 04:27:51.534 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36313 806
17-03-18 04:27:51.674 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:51.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:51.684 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:51.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:27:51.734 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:27:51.734 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:51.734 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:27:51.734 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:27:51.734 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:51.744 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:51.744 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:27:51.744 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:27:51.744 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:27:51.884 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:51.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:51.884 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:51.884 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:51.884 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:27:51.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:51.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:51.894 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:51.894 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:51.894 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:27:52.084 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:27:52.084 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:52.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36313 150' command took 2 ms to send, 1350 ms to get response, and 1358 ms overall
17-03-18 04:27:52.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:27:52.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165434169670581. ------
17-03-18 04:27:52.084 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:52.084 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17169 mm
17-03-18 04:27:52.084 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:52.084 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:27:52.084 -07 000000455 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:27:52.084 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37506, sync = True, waitForSettling = False)
17-03-18 04:27:52.084 -07 000000501 INF: Z Motor: Moving to -0.171691 mm, started at -0.165434 mm, distance = -6.26 um
17-03-18 04:27:52.094 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:52.094 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:52.094 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 04:27:52.094 -07 000000561 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:27:52.104 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:27:52.104 -07 000000455 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:52.104 -07 000000455 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:27:52.104 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:27:52.214 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:52.224 -07 000000501 INF: FPGA: Xmit ZDACW 37506\n [Z Motor]
17-03-18 04:27:52.224 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:27:52.234 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:27:52.234 -07 000000501 INF: FPGA: 'ZDACW 37506' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-18 04:27:52.244 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:52.244 -07 000000561 INF: FPGA: Recv ZDACR 37506
17-03-18 04:27:52.254 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:27:52.254 -07 000000501 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 04:27:52.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:27:52.284 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:27:52.284 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:52.284 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:27:52.284 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:27:52.284 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:52.294 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:52.294 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:27:52.294 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:27:52.294 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:27:52.414 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:52.414 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 114 ms to send, 197 ms to get response, and 324 ms overall
17-03-18 04:27:52.604 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:27:52.604 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:27:52.634 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:52.644 -07 000000474 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:27:52.644 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:27:52.644 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:52.644 -07 000000455 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:27:52.644 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.845 mm, average velocity = 1.666 mm/sec
17-03-18 04:27:53.594 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:53.594 -07 000000474 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:27:53.604 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:53.604 -07 000000455 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:53.624 -07 000000455 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:27:53.624 -07 000000455 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:27:53.624 -07 000000455 INF: Y Motor: Moved to 74.8315 after 1532 ms (table move)
17-03-18 04:27:53.624 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171691 mm (DAC = 37506)
17-03-18 04:27:53.624 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.624 -07 000000487 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:27:53.634 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:53.634 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.634 -07 000000585 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:27:53.644 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.644 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.644 -07 000000501 INF: FPGA: Recv ZSGSRD 36008
17-03-18 04:27:53.654 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.654 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.654 -07 000000585 INF: FPGA: Recv ZSGSRD 36016
17-03-18 04:27:53.664 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.664 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.664 -07 000000501 INF: FPGA: Recv ZSGSRD 36019
17-03-18 04:27:53.674 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.674 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.674 -07 000000585 INF: FPGA: Recv ZSGSRD 36018
17-03-18 04:27:53.684 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.684 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.684 -07 000000474 INF: FPGA: Recv ZSGSRD 36021
17-03-18 04:27:53.694 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.694 -07 000000455 INF: FPGA: Recv ZSGSRD 36021
17-03-18 04:27:53.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.704 -07 000000487 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:27:53.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:53.714 -07 000000585 INF: FPGA: Recv ZSGSRD 36012
17-03-18 04:27:53.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.724 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:53.724 -07 000000487 INF: FPGA: Recv ZPIEZORD 31954
17-03-18 04:27:53.734 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:53.734 -07 000000461 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.0 V.
17-03-18 04:27:53.734 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36014 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36008 (-170.8 uncal um), Max = 36021 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:27:53.734 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36014, posNoise = 7, negNoise = 6
17-03-18 04:27:53.734 -07 000000461 INF: Z Motor: After move to -0.171691, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:53.734 -07 000000461 INF: Z Motor: Settle wait time = 1535 ms, measure time = 107 ms (allowed 150 ms), total time = 1642 ms
17-03-18 04:27:53.734 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:27:53.784 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1694 ms
17-03-18 04:27:53.784 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:27:53.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:53.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:53.784 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:53.784 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:27:53.784 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:53.784 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:53.784 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:53.784 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:27:53.794 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:53.794 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:27:53.794 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:27:53.794 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:27:53.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:27:53.844 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:27:54.144 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:27:54.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:27:54.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:27:54.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:27:54.184 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:27:54.184 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:27:54.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 04:27:54.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:27:54.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:54.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:27:54.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:27:54.284 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:54.284 -07 000000501 INF: Autofocus start
17-03-18 04:27:54.284 -07 000000501 INF: MeasureProfile start
17-03-18 04:27:54.284 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:54.294 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:27:54.294 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:27:54.304 -07 000000501 INF: MeasureProfile done
17-03-18 04:27:54.304 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:27:54.304 -07 000000501 INF: Autofocus finished
17-03-18 04:27:54.494 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:27:54.494 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:27:54.494 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171684928084514. ----------
17-03-18 04:27:54.494 -07 000000610 INF: Cycle	125	Tile	19	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:27:54.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36039, sync = True, waitForSettling = True)
17-03-18 04:27:54.504 -07 000000610 INF: Z Motor: Moving to -0.164976 mm, started at -0.171685 mm, distance = 6.71 um
17-03-18 04:27:54.504 -07 000000610 INF: FPGA: Xmit ZDACW 36039\n [Z Motor]
17-03-18 04:27:54.504 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:27:54.514 -07 000000610 INF: FPGA: 'ZDACW 36039' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:54.514 -07 000000487 INF: FPGA: Recv ZDACR 36039
17-03-18 04:27:54.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:27:54.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.674 -07 000000501 INF: FPGA: Recv ZSGSRD 34971
17-03-18 04:27:54.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:27:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.684 -07 000000455 INF: FPGA: Recv ZSGSRD 34969
17-03-18 04:27:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.694 -07 000000585 INF: FPGA: Recv ZSGSRD 34970
17-03-18 04:27:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.704 -07 000000461 INF: FPGA: Recv ZSGSRD 34974
17-03-18 04:27:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.714 -07 000000501 INF: FPGA: Recv ZSGSRD 34973
17-03-18 04:27:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.724 -07 000000487 INF: FPGA: Recv ZSGSRD 34976
17-03-18 04:27:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.734 -07 000000474 INF: FPGA: Recv ZSGSRD 34968
17-03-18 04:27:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.744 -07 000000461 INF: FPGA: Recv ZSGSRD 34973
17-03-18 04:27:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.754 -07 000000455 INF: FPGA: Recv ZSGSRD 34967
17-03-18 04:27:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:27:54.764 -07 000000461 INF: FPGA: Recv ZSGSRD 34971
17-03-18 04:27:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:27:54.774 -07 000000585 INF: FPGA: Recv ZPIEZORD 30580
17-03-18 04:27:54.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:54.784 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.499 V. Piezo Error = -9.7 V.
17-03-18 04:27:54.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34971 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34971 (-164.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34967 (-164.1 uncal um), Max = 34976 (-164.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:27:54.784 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34971, posNoise = 5, negNoise = 4
17-03-18 04:27:54.784 -07 000000610 INF: Z Motor: After move to -0.164976, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:27:54.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:27:54.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:27:54.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:27:54.784 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:27:54.784 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:27:54.784 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:27:54.784 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:27:54.784 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:27:54.784 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:27:54.784 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:27:54.784 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:27:54.784 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:27:54.784 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:27:54.784 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:27:54.784 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:27:54.784 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:27:54.794 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:27:54.804 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:27:54.804 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:27:54.804 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:27:54.804 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:27:54.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36216 150\n [Camera]
17-03-18 04:27:55.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:27:55.424 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:27:55.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:27:55.434 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:55.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:27:55.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:27:55.434 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:55.434 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:55.434 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:27:55.444 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:55.444 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:27:55.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36216 806
17-03-18 04:27:55.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:27:55.824 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:27:55.824 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:27:55.824 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:55.824 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:27:55.824 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:27:55.824 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:55.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:55.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:27:55.834 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:55.834 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:27:55.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:27:55.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:27:55.974 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:27:55.974 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:27:55.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:27:55.974 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:27:55.974 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:27:55.974 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:27:55.984 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:27:55.984 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 04:27:56.164 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:27:56.164 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:27:56.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36216 150' command took 2 ms to send, 1346 ms to get response, and 1357 ms overall
17-03-18 04:27:56.364 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:27:56.364 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:27:56.364 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:56.364 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:27:56.364 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:27:56.364 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:27:56.364 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:27:56.374 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:27:56.374 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:27:56.374 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:27:56.374 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:27:56.414 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 04:27:56.414 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:27:56.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:27:56.454 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:27:56.454 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:27:56.454 -07 000000487 INF: FPGA: Recv EMCUR 
17-03-18 04:27:56.464 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:27:56.464 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:27:56.674 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:27:56.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:27:56.874 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.023489,
17-03-18 04:27:56.964 -07 000000438 INF: FPGA: Recv EMIN
17-03-18 04:27:56.964 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:27:56.964 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:27:56.964 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-18 04:27:56.974 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:27:56.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:27:56.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164984474820657. ------
17-03-18 04:27:56.974 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:27:56.974 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13933 mm
17-03-18 04:27:56.974 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:27:56.984 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30436, sync = True, waitForSettling = False)
17-03-18 04:27:56.984 -07 000000585 INF: Z Motor: Moving to -0.139327 mm, started at -0.164984 mm, distance = 25.66 um
17-03-18 04:27:56.984 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:27:56.984 -07 000000487 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 04:27:56.984 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:27:56.984 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:27:56.984 -07 000000585 INF: FPGA: Xmit ZDACW 30436\n [Z Motor]
17-03-18 04:27:56.984 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:27:56.994 -07 000000585 INF: FPGA: 'ZDACW 30436' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:27:56.994 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:27:57.004 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:27:57.004 -07 000000438 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:27:57.014 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:27:57.014 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:57.014 -07 000000487 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:27:57.014 -07 000000461 INF: FPGA: Recv ZDACR 30436
17-03-18 04:27:57.014 -07 000000487 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:27:57.014 -07 000000487 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:27:57.024 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:27:57.024 -07 000000487 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:27:57.024 -07 000000585 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:27:57.194 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:27:57.194 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 213 ms overall
17-03-18 04:27:58.644 -07 000000461 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 04:27:58.644 -07 000000487 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1633 ms overall
17-03-18 04:27:58.644 -07 000000487 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:27:58.644 -07 000000487 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:27:58.644 -07 000000487 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.919 mm, average velocity = 9.136 mm/sec
17-03-18 04:28:01.494 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:01.494 -07 000000585 INF: FPGA: Recv YRDPOS 122697
17-03-18 04:28:01.504 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:01.504 -07 000000487 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:01.544 -07 000000487 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:01.544 -07 000000487 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:28:01.544 -07 000000487 INF: Y Motor: Moved to 59.9106 after 4560 ms
17-03-18 04:28:01.544 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139327 mm (DAC = 30436)
17-03-18 04:28:01.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.544 -07 000000585 INF: FPGA: Recv ZSGSRD 30977
17-03-18 04:28:01.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:28:01.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.554 -07 000000585 INF: FPGA: Recv ZSGSRD 30978
17-03-18 04:28:01.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.564 -07 000000438 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:28:01.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.574 -07 000000585 INF: FPGA: Recv ZSGSRD 30981
17-03-18 04:28:01.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.584 -07 000000487 INF: FPGA: Recv ZSGSRD 30981
17-03-18 04:28:01.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.594 -07 000000461 INF: FPGA: Recv ZSGSRD 30974
17-03-18 04:28:01.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.604 -07 000000461 INF: FPGA: Recv ZSGSRD 30976
17-03-18 04:28:01.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.614 -07 000000461 INF: FPGA: Recv ZSGSRD 30983
17-03-18 04:28:01.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.624 -07 000000461 INF: FPGA: Recv ZSGSRD 30976
17-03-18 04:28:01.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:01.634 -07 000000501 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:28:01.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.644 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:01.644 -07 000000461 INF: FPGA: Recv ZPIEZORD 26415
17-03-18 04:28:01.654 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:01.654 -07 000000561 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -10.0 V.
17-03-18 04:28:01.654 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30976 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30974 (-138.5 uncal um), Max = 30983 (-138.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:28:01.654 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 5, negNoise = 4
17-03-18 04:28:01.654 -07 000000561 INF: Z Motor: After move to -0.139327, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:01.654 -07 000000561 INF: Z Motor: Settle wait time = 4564 ms, measure time = 107 ms (allowed 150 ms), total time = 4671 ms
17-03-18 04:28:01.654 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:01.674 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:01.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:01.704 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4722 ms
17-03-18 04:28:01.704 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:01.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:01.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:01.704 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:01.704 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:01.704 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:01.714 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:01.714 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:01.714 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:28:01.734 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 04:28:01.734 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:01.734 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:01.734 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:01.734 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:01.744 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 04:28:01.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:01.784 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:02.084 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:02.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:02.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:02.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 04:28:02.124 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:02.124 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:02.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:28:02.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 04:28:02.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:02.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:02.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:28:02.224 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:02.224 -07 000000611 INF: Image SNR check: start
17-03-18 04:28:02.224 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:02.234 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:02.234 -07 000000611 INF: Image SNR check: pass  [peak (Max-Min)=125.50]
17-03-18 04:28:02.234 -07 000000611 INF: Autofocus start
17-03-18 04:28:02.234 -07 000000611 INF: MeasureProfile start
17-03-18 04:28:02.244 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.004458,
17-03-18 04:28:02.254 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:02.254 -07 000000611 INF: MeasureProfile done
17-03-18 04:28:02.254 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:28:02.254 -07 000000611 INF: Autofocus finished
17-03-18 04:28:02.454 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:02.454 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:28:02.454 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139332595738606. ----------
17-03-18 04:28:02.454 -07 000000610 INF: Cycle	125	Tile	1	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:02.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = True)
17-03-18 04:28:02.464 -07 000000610 INF: Z Motor: Moving to -0.132493 mm, started at -0.139333 mm, distance = 6.84 um
17-03-18 04:28:02.464 -07 000000610 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-18 04:28:02.464 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:28:02.474 -07 000000610 INF: FPGA: 'ZDACW 28943' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:02.474 -07 000000561 INF: FPGA: Recv ZDACR 28943
17-03-18 04:28:02.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:02.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.634 -07 000000611 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:28:02.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:02.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.644 -07 000000438 INF: FPGA: Recv ZSGSRD 29912
17-03-18 04:28:02.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.654 -07 000000591 INF: FPGA: Recv ZSGSRD 29912
17-03-18 04:28:02.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.664 -07 000000501 INF: FPGA: Recv ZSGSRD 29919
17-03-18 04:28:02.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.674 -07 000000487 INF: FPGA: Recv ZSGSRD 29911
17-03-18 04:28:02.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.684 -07 000000585 INF: FPGA: Recv ZSGSRD 29908
17-03-18 04:28:02.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.694 -07 000000561 INF: FPGA: Recv ZSGSRD 29907
17-03-18 04:28:02.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.704 -07 000000438 INF: FPGA: Recv ZSGSRD 29913
17-03-18 04:28:02.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.714 -07 000000487 INF: FPGA: Recv ZSGSRD 29915
17-03-18 04:28:02.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:02.724 -07 000000585 INF: FPGA: Recv ZSGSRD 29912
17-03-18 04:28:02.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:02.734 -07 000000591 INF: FPGA: Recv ZPIEZORD 25269
17-03-18 04:28:02.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:02.744 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.2 V.
17-03-18 04:28:02.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29912 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29912 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29907 (-131.7 uncal um), Max = 29919 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:02.744 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29912, posNoise = 7, negNoise = 5
17-03-18 04:28:02.744 -07 000000610 INF: Z Motor: After move to -0.132493, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:02.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:28:02.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:02.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:02.744 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:02.744 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:02.744 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:02.744 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:02.744 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:02.744 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:02.744 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:02.744 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:02.744 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:02.744 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:28:02.754 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:02.754 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:02.764 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:28:02.764 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:28:02.764 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:28:02.774 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:02.774 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:28:02.774 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:02.784 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:28:02.784 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 04:28:02.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29120 150\n [Camera]
17-03-18 04:28:02.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:03.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:03.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:03.414 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:03.414 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:03.414 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:28:03.414 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:03.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:03.414 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:03.414 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:03.414 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:28:03.604 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29120 806
17-03-18 04:28:03.754 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:03.804 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:28:03.804 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:28:03.804 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:03.804 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:28:03.804 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:28:03.804 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:03.804 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:03.804 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:28:03.804 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:03.814 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:28:03.954 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:03.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:03.954 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:03.954 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:03.954 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:28:03.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:03.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:03.954 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:03.954 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:03.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:28:04.144 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:04.144 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:04.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29120 150' command took 2 ms to send, 1348 ms to get response, and 1358 ms overall
17-03-18 04:28:04.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:04.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132484385595489. ------
17-03-18 04:28:04.154 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:04.154 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13890 mm
17-03-18 04:28:04.154 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:04.154 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:28:04.154 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 04:28:04.154 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:04.154 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30342, sync = True, waitForSettling = False)
17-03-18 04:28:04.154 -07 000000561 INF: Z Motor: Moving to -0.138897 mm, started at -0.132484 mm, distance = -6.41 um
17-03-18 04:28:04.284 -07 000000561 INF: FPGA: Xmit ZDACW 30342\n [Z Motor]
17-03-18 04:28:04.284 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-18 04:28:04.294 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:04.304 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:04.364 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:28:04.364 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:28:04.364 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:04.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:28:04.364 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:28:04.364 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:04.364 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:04.374 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:28:04.374 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:28:04.374 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:28:04.384 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:28:04.384 -07 000000611 INF: FPGA: Recv YRDPOS 122697
17-03-18 04:28:04.384 -07 000000561 INF: FPGA: 'ZDACW 30342' command took 0 ms to send, 90 ms to get response, and 222 ms overall
17-03-18 04:28:04.384 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:04.384 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 70 ms to get response, and 223 ms overall
17-03-18 04:28:04.384 -07 000000438 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:04.384 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:04.384 -07 000000438 INF: Y Motor: Moving 1331 steps2
17-03-18 04:28:04.384 -07 000000611 INF: FPGA: Recv ZDACR 30342
17-03-18 04:28:04.394 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:04.394 -07 000000561 INF: Z Motor: MoveAbsStepped took 232 ms (did NOT wait for settling yet))
17-03-18 04:28:04.394 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:04.494 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:04.494 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 212 ms overall
17-03-18 04:28:04.774 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:28:04.774 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 388 ms overall
17-03-18 04:28:04.814 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:04.814 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:28:04.824 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:04.824 -07 000000438 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:04.824 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:28:04.824 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.832 mm, average velocity = 2.139 mm/sec
17-03-18 04:28:05.774 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:05.774 -07 000000611 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:28:05.784 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:05.784 -07 000000438 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:05.814 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:05.814 -07 000000438 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:05.814 -07 000000438 INF: Y Motor: Moved to 60.7324 after 1655 ms (table move)
17-03-18 04:28:05.814 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138897 mm (DAC = 30342)
17-03-18 04:28:05.814 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.814 -07 000000591 INF: FPGA: Recv ZSGSRD 30919
17-03-18 04:28:05.824 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:05.824 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.824 -07 000000591 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:28:05.834 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.834 -07 000000611 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:28:05.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30912
17-03-18 04:28:05.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.854 -07 000000461 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:28:05.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.864 -07 000000438 INF: FPGA: Recv ZSGSRD 30921
17-03-18 04:28:05.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.874 -07 000000438 INF: FPGA: Recv ZSGSRD 30915
17-03-18 04:28:05.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.884 -07 000000591 INF: FPGA: Recv ZSGSRD 30913
17-03-18 04:28:05.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.894 -07 000000591 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:28:05.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:05.904 -07 000000461 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:28:05.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.914 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:05.914 -07 000000591 INF: FPGA: Recv ZPIEZORD 26602
17-03-18 04:28:05.924 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:05.924 -07 000000501 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.5 V.
17-03-18 04:28:05.924 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30910 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30901 (-138.0 uncal um), Max = 30921 (-138.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:28:05.924 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30910, posNoise = 11, negNoise = 9
17-03-18 04:28:05.924 -07 000000501 INF: Z Motor: After move to -0.138897, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:05.924 -07 000000501 INF: Z Motor: Settle wait time = 1657 ms, measure time = 105 ms (allowed 150 ms), total time = 1762 ms
17-03-18 04:28:05.924 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:05.974 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1815 ms
17-03-18 04:28:05.974 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:05.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:05.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:05.974 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:05.974 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:05.974 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:05.974 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:05.974 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:05.974 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:05.984 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:05.984 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:05.994 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:28:05.994 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:28:05.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:06.044 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:06.344 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:06.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:06.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:06.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:06.384 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:06.384 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:06.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 387 ms overall
17-03-18 04:28:06.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:28:06.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:06.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:06.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:28:06.484 -07 000000611 INF: Autofocus start
17-03-18 04:28:06.484 -07 000000611 INF: MeasureProfile start
17-03-18 04:28:06.484 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:06.484 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:06.494 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:06.494 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:06.494 -07 000000611 INF: MeasureProfile done
17-03-18 04:28:06.494 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:28:06.494 -07 000000611 INF: Autofocus finished
17-03-18 04:28:06.674 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:06.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:06.694 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:06.694 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 04:28:06.704 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138895749312966. ----------
17-03-18 04:28:06.704 -07 000000610 INF: Cycle	125	Tile	2	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:06.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28849, sync = True, waitForSettling = True)
17-03-18 04:28:06.704 -07 000000610 INF: Z Motor: Moving to -0.132062 mm, started at -0.138896 mm, distance = 6.83 um
17-03-18 04:28:06.704 -07 000000610 INF: FPGA: Xmit ZDACW 28849\n [Z Motor]
17-03-18 04:28:06.704 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:28:06.714 -07 000000610 INF: FPGA: 'ZDACW 28849' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:06.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:06.714 -07 000000561 INF: FPGA: Recv ZDACR 28849
17-03-18 04:28:06.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:06.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.874 -07 000000501 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:28:06.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.884 -07 000000461 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:28:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:28:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.904 -07 000000461 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:28:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.914 -07 000000444 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:28:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29851
17-03-18 04:28:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.934 -07 000000438 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:28:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.944 -07 000000461 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:28:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.954 -07 000000438 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:28:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:06.964 -07 000000461 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:28:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:06.974 -07 000000438 INF: FPGA: Recv ZPIEZORD 25232
17-03-18 04:28:06.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:06.984 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 04:28:06.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29844 (-131.3 uncal um), Max = 29851 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:28:06.984 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 5, negNoise = 2
17-03-18 04:28:06.984 -07 000000610 INF: Z Motor: After move to -0.132062, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:06.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:28:06.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:06.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:06.984 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:06.984 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:06.984 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:06.984 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:06.984 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:06.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:06.984 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:06.984 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:06.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:06.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:06.994 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:06.994 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:06.994 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:06.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:07.004 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:28:07.004 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:28:07.004 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:28:07.004 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:28:07.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29026 150\n [Camera]
17-03-18 04:28:07.204 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:07.624 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.99219,
17-03-18 04:28:07.634 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:07.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:07.634 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:07.634 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:07.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:07.634 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:07.634 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:07.634 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:07.644 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:07.644 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:28:07.824 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29026 806
17-03-18 04:28:07.974 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:08.034 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:28:08.034 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:28:08.034 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:08.034 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:08.034 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:28:08.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:28:08.034 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:28:08.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:08.044 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:08.044 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:28:08.174 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:08.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:08.174 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:08.174 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:08.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:08.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:08.184 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:08.184 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:28:08.184 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:08.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:28:08.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:28:08.364 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:08.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29026 150' command took 2 ms to send, 1347 ms to get response, and 1358 ms overall
17-03-18 04:28:08.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:08.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132060387594133. ------
17-03-18 04:28:08.494 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:08.494 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13881 mm
17-03-18 04:28:08.494 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:08.494 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:28:08.494 -07 000000461 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:28:08.494 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30323, sync = True, waitForSettling = False)
17-03-18 04:28:08.494 -07 000000561 INF: Z Motor: Moving to -0.138810 mm, started at -0.132060 mm, distance = -6.75 um
17-03-18 04:28:08.494 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:08.504 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:08.504 -07 000000561 INF: FPGA: Xmit ZDACW 30323\n [Z Motor]
17-03-18 04:28:08.504 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:28:08.514 -07 000000561 INF: FPGA: 'ZDACW 30323' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:28:08.514 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:08.514 -07 000000626 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:28:08.524 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:08.524 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:28:08.524 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:08.524 -07 000000461 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:08.524 -07 000000461 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:28:08.534 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:08.534 -07 000000474 INF: FPGA: Recv ZDACR 30323
17-03-18 04:28:08.544 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:08.544 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:08.544 -07 000000561 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:28:08.574 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:28:08.574 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:28:08.574 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:08.584 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:08.584 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:28:08.584 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:28:08.584 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:08.584 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:08.584 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:28:08.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:28:08.724 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:08.724 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:28:08.914 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:28:08.914 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:28:08.964 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:08.964 -07 000000626 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:28:08.974 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:08.974 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:08.974 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:28:08.974 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 04:28:09.924 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:09.924 -07 000000444 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:28:09.934 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:09.934 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:09.964 -07 000000461 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:09.964 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:09.964 -07 000000461 INF: Y Motor: Moved to 61.5635 after 1466 ms (table move)
17-03-18 04:28:09.964 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138810 mm (DAC = 30323)
17-03-18 04:28:09.964 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:09.964 -07 000000461 INF: FPGA: Recv ZSGSRD 30895
17-03-18 04:28:09.974 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:09.974 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:09.974 -07 000000438 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:28:09.984 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:09.984 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:09.984 -07 000000461 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:28:09.994 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:09.994 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:09.994 -07 000000561 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:28:10.004 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.004 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:10.004 -07 000000626 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:28:10.014 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:10.014 -07 000000438 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:28:10.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:10.024 -07 000000461 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:28:10.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:10.034 -07 000000444 INF: FPGA: Recv ZSGSRD 30890
17-03-18 04:28:10.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:10.044 -07 000000438 INF: FPGA: Recv ZSGSRD 30890
17-03-18 04:28:10.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:10.054 -07 000000626 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:28:10.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.064 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:10.064 -07 000000444 INF: FPGA: Recv ZPIEZORD 26671
17-03-18 04:28:10.074 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.074 -07 000000501 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.3 V.
17-03-18 04:28:10.074 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30898 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30898 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30890 (-138.0 uncal um), Max = 30905 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:28:10.074 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30898, posNoise = 7, negNoise = 8
17-03-18 04:28:10.074 -07 000000501 INF: Z Motor: After move to -0.138810, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:10.074 -07 000000501 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms
17-03-18 04:28:10.074 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:10.124 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:28:10.124 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:10.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:10.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:10.124 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:10.124 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:10.124 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:10.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:10.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:10.124 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:10.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:10.134 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:10.134 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:10.134 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:28:10.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:10.184 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:10.484 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:10.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:10.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:10.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:10.524 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:10.524 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:10.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:28:10.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:28:10.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:10.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:10.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:28:10.624 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:10.624 -07 000000501 INF: Autofocus start
17-03-18 04:28:10.624 -07 000000501 INF: MeasureProfile start
17-03-18 04:28:10.624 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:10.634 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:10.634 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:10.644 -07 000000501 INF: MeasureProfile done
17-03-18 04:28:10.644 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:28:10.644 -07 000000501 INF: Autofocus finished
17-03-18 04:28:10.834 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:10.834 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:10.834 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.138818658767265. ----------
17-03-18 04:28:10.834 -07 000000610 INF: Cycle	125	Tile	3	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:10.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28864, sync = True, waitForSettling = True)
17-03-18 04:28:10.844 -07 000000610 INF: Z Motor: Moving to -0.132131 mm, started at -0.138819 mm, distance = 6.69 um
17-03-18 04:28:10.844 -07 000000610 INF: FPGA: Xmit ZDACW 28864\n [Z Motor]
17-03-18 04:28:10.844 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:28:10.854 -07 000000610 INF: FPGA: 'ZDACW 28864' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:10.854 -07 000000438 INF: FPGA: Recv ZDACR 28864
17-03-18 04:28:10.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:10.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:11.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.014 -07 000000626 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:28:11.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:11.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.024 -07 000000438 INF: FPGA: Recv ZSGSRD 29859
17-03-18 04:28:11.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.034 -07 000000501 INF: FPGA: Recv ZSGSRD 29856
17-03-18 04:28:11.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.044 -07 000000444 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:28:11.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.054 -07 000000438 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:28:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29859
17-03-18 04:28:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.074 -07 000000561 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:28:11.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.084 -07 000000444 INF: FPGA: Recv ZSGSRD 29859
17-03-18 04:28:11.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.094 -07 000000444 INF: FPGA: Recv ZSGSRD 29855
17-03-18 04:28:11.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:11.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:11.104 -07 000000626 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:28:11.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:11.114 -07 000000444 INF: FPGA: Recv ZPIEZORD 25308
17-03-18 04:28:11.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:11.124 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V.
17-03-18 04:28:11.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29857 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29849 (-131.3 uncal um), Max = 29861 (-131.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:28:11.124 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29857, posNoise = 4, negNoise = 8
17-03-18 04:28:11.124 -07 000000610 INF: Z Motor: After move to -0.132131, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:11.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:28:11.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:11.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:11.124 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:11.124 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:11.124 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:11.124 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:11.124 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:11.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:11.124 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:11.124 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:11.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:11.124 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:11.134 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:28:11.134 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:11.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:11.134 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:11.134 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:28:11.134 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:11.134 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:11.134 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:11.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29041 150\n [Camera]
17-03-18 04:28:11.344 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:11.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:11.764 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:11.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:11.764 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:11.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:11.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:11.764 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:11.764 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:11.764 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:28:11.774 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:11.774 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:11.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29041 806
17-03-18 04:28:12.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:12.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:28:12.164 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:28:12.164 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:12.164 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:28:12.164 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:28:12.164 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:12.174 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:12.174 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:28:12.174 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:12.174 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:28:12.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:12.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:12.314 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:12.314 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:12.314 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:12.314 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:28:12.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:12.314 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:12.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:12.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:28:12.504 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:12.504 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:12.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29041 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:28:12.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:12.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132131053927692. ------
17-03-18 04:28:12.514 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:12.514 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13848 mm
17-03-18 04:28:12.514 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:12.514 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:12.514 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:28:12.514 -07 000000467 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 04:28:12.514 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30251, sync = True, waitForSettling = False)
17-03-18 04:28:12.514 -07 000000455 INF: Z Motor: Moving to -0.138480 mm, started at -0.132131 mm, distance = -6.35 um
17-03-18 04:28:12.524 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:12.524 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:12.524 -07 000000608 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:28:12.534 -07 000000455 INF: FPGA: Xmit ZDACW 30251\n [Z Motor]
17-03-18 04:28:12.534 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:28:12.534 -07 000000467 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:12.534 -07 000000467 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:12.534 -07 000000467 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:28:12.534 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:28:12.544 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:12.544 -07 000000455 INF: FPGA: 'ZDACW 30251' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:28:12.554 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:12.564 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:12.564 -07 000000444 INF: FPGA: Recv ZDACR 30251
17-03-18 04:28:12.574 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:12.574 -07 000000455 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:28:12.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:28:12.714 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:28:12.714 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:12.714 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:28:12.714 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:28:12.714 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:12.724 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:12.724 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:12.724 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:28:12.724 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:28:12.744 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:12.744 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:28:12.924 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:28:12.924 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:28:12.984 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:12.984 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.999021,
17-03-18 04:28:12.984 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:28:12.994 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:28:12.994 -07 000000467 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:12.994 -07 000000467 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:28:12.994 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 04:28:13.944 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:13.944 -07 000000455 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:28:13.954 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:13.954 -07 000000467 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:13.984 -07 000000467 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:13.984 -07 000000467 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:13.984 -07 000000467 INF: Y Motor: Moved to 62.3950 after 1466 ms (table move)
17-03-18 04:28:13.984 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138480 mm (DAC = 30251)
17-03-18 04:28:13.984 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:13.984 -07 000000608 INF: FPGA: Recv ZSGSRD 30851
17-03-18 04:28:13.994 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:28:13.994 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:13.994 -07 000000608 INF: FPGA: Recv ZSGSRD 30852
17-03-18 04:28:14.004 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.004 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30838
17-03-18 04:28:14.014 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.014 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.014 -07 000000455 INF: FPGA: Recv ZSGSRD 30853
17-03-18 04:28:14.024 -07 000000487 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.024 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.024 -07 000000455 INF: FPGA: Recv ZSGSRD 30846
17-03-18 04:28:14.034 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.034 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.034 -07 000000501 INF: FPGA: Recv ZSGSRD 30836
17-03-18 04:28:14.044 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.044 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.044 -07 000000501 INF: FPGA: Recv ZSGSRD 30850
17-03-18 04:28:14.054 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.054 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.054 -07 000000501 INF: FPGA: Recv ZSGSRD 30846
17-03-18 04:28:14.064 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.064 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.064 -07 000000501 INF: FPGA: Recv ZSGSRD 30852
17-03-18 04:28:14.074 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.074 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:14.074 -07 000000455 INF: FPGA: Recv ZSGSRD 30856
17-03-18 04:28:14.084 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.084 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:14.084 -07 000000626 INF: FPGA: Recv ZPIEZORD 26613
17-03-18 04:28:14.094 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.094 -07 000000487 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.3 V.
17-03-18 04:28:14.094 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30848 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30850 (-137.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30836 (-137.6 uncal um), Max = 30856 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 04:28:14.094 -07 000000487 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30848, posNoise = 8, negNoise = 12
17-03-18 04:28:14.094 -07 000000487 INF: Z Motor: After move to -0.138480, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:14.094 -07 000000487 INF: Z Motor: Settle wait time = 1469 ms, measure time = 107 ms (allowed 150 ms), total time = 1576 ms
17-03-18 04:28:14.094 -07 000000487 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:14.144 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 04:28:14.144 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:14.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:14.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:14.144 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:14.144 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:14.144 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:14.144 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:14.144 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:28:14.144 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:14.154 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:14.154 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:14.154 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:14.164 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:28:14.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:14.204 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:14.504 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:14.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:14.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:14.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:28:14.544 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:14.544 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:14.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:28:14.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:28:14.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:14.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:28:14.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:28:14.644 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:14.644 -07 000000438 INF: Autofocus start
17-03-18 04:28:14.644 -07 000000438 INF: MeasureProfile start
17-03-18 04:28:14.644 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:14.654 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:14.654 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:14.654 -07 000000438 INF: MeasureProfile done
17-03-18 04:28:14.654 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:28:14.654 -07 000000438 INF: Autofocus finished
17-03-18 04:28:14.854 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:14.854 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:14.854 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138497448160177. ----------
17-03-18 04:28:14.854 -07 000000610 INF: Cycle	125	Tile	4	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:14.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28746, sync = True, waitForSettling = True)
17-03-18 04:28:14.864 -07 000000610 INF: Z Motor: Moving to -0.131591 mm, started at -0.138497 mm, distance = 6.91 um
17-03-18 04:28:14.864 -07 000000610 INF: FPGA: Xmit ZDACW 28746\n [Z Motor]
17-03-18 04:28:14.864 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:28:14.874 -07 000000610 INF: FPGA: 'ZDACW 28746' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:14.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:14.874 -07 000000438 INF: FPGA: Recv ZDACR 28746
17-03-18 04:28:14.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:14.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.034 -07 000000608 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:28:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:15.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.044 -07 000000487 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:28:15.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.054 -07 000000455 INF: FPGA: Recv ZSGSRD 29768
17-03-18 04:28:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.064 -07 000000487 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:28:15.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:28:15.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.084 -07 000000487 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:28:15.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29775
17-03-18 04:28:15.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.104 -07 000000487 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:28:15.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.114 -07 000000626 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:28:15.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:15.124 -07 000000487 INF: FPGA: Recv ZSGSRD 29772
17-03-18 04:28:15.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:15.134 -07 000000455 INF: FPGA: Recv ZPIEZORD 25187
17-03-18 04:28:15.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:15.144 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -10.1 V.
17-03-18 04:28:15.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29777 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29768 (-130.8 uncal um), Max = 29782 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:28:15.144 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 6, negNoise = 8
17-03-18 04:28:15.144 -07 000000610 INF: Z Motor: After move to -0.131591, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:15.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:28:15.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:15.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:15.144 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:15.144 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:15.144 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:15.144 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:15.144 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:15.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:15.144 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:28:15.144 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:15.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:28:15.144 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:15.154 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:15.154 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:15.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:15.154 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:15.164 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:28:15.164 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:28:15.164 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:15.164 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:28:15.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28923 150\n [Camera]
17-03-18 04:28:15.364 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:15.784 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:15.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:15.784 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:15.784 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:15.784 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:28:15.784 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:15.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:15.784 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:15.784 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:15.784 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:28:15.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28923 806
17-03-18 04:28:16.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:16.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:28:16.184 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:28:16.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:16.184 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:28:16.184 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:28:16.184 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:16.184 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:16.184 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:28:16.194 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:16.194 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:28:16.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:16.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:16.334 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:16.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:16.334 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:16.334 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:28:16.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:16.334 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:16.334 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:16.334 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:28:16.524 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:16.524 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:16.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28923 150' command took 2 ms to send, 1351 ms to get response, and 1357 ms overall
17-03-18 04:28:16.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:16.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131610692744209. ------
17-03-18 04:28:16.524 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:16.524 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13838 mm
17-03-18 04:28:16.524 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:16.524 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 30229, sync = True, waitForSettling = False)
17-03-18 04:28:16.524 -07 000000487 INF: Z Motor: Moving to -0.138379 mm, started at -0.131611 mm, distance = -6.77 um
17-03-18 04:28:16.524 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:28:16.524 -07 000000585 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:28:16.534 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:16.534 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:16.534 -07 000000487 INF: FPGA: Xmit ZDACW 30229\n [Z Motor]
17-03-18 04:28:16.534 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:28:16.544 -07 000000487 INF: FPGA: 'ZDACW 30229' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:16.544 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:16.544 -07 000000501 INF: FPGA: Recv ZDACR 30229
17-03-18 04:28:16.554 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:16.554 -07 000000487 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 04:28:16.554 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:16.664 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:16.664 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:28:16.664 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 04:28:16.664 -07 000000585 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:16.664 -07 000000585 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:16.664 -07 000000585 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:28:16.674 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:16.674 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:16.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:16.724 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:28:16.724 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:28:16.724 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:16.734 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:28:16.734 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:28:16.734 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:16.734 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:16.734 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:28:16.734 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:28:16.734 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:28:16.874 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:16.874 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 340 ms overall
17-03-18 04:28:17.044 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:28:17.044 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 04:28:17.094 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:17.104 -07 000000474 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:28:17.104 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:17.104 -07 000000585 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:17.104 -07 000000585 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:28:17.104 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.210 mm/sec
17-03-18 04:28:18.054 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:18.054 -07 000000438 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:28:18.064 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:18.064 -07 000000585 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:18.094 -07 000000585 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:18.094 -07 000000585 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:28:18.094 -07 000000585 INF: Y Motor: Moved to 63.2236 after 1562 ms (table move)
17-03-18 04:28:18.094 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138379 mm (DAC = 30229)
17-03-18 04:28:18.094 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.104 -07 000000611 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:28:18.104 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:28:18.104 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.104 -07 000000438 INF: FPGA: Recv ZSGSRD 30831
17-03-18 04:28:18.114 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.114 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.114 -07 000000438 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:28:18.124 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:18.124 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.124 -07 000000585 INF: FPGA: Recv ZSGSRD 30827
17-03-18 04:28:18.134 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.134 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.134 -07 000000561 INF: FPGA: Recv ZSGSRD 30836
17-03-18 04:28:18.144 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.144 -07 000000012 INF: FPGA: Recv ZSGSRD 30831
17-03-18 04:28:18.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.154 -07 000000585 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:28:18.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.164 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30827
17-03-18 04:28:18.174 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.174 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.174 -07 000000455 INF: FPGA: Recv ZSGSRD 30828
17-03-18 04:28:18.184 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.184 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:18.184 -07 000000591 INF: FPGA: Recv ZSGSRD 30838
17-03-18 04:28:18.194 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.194 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:18.194 -07 000000438 INF: FPGA: Recv ZPIEZORD 26577
17-03-18 04:28:18.204 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.204 -07 000000461 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.4 V.
17-03-18 04:28:18.204 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30830 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30830 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30838 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:28:18.204 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30830, posNoise = 8, negNoise = 7
17-03-18 04:28:18.204 -07 000000461 INF: Z Motor: After move to -0.138379, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:18.204 -07 000000461 INF: Z Motor: Settle wait time = 1566 ms, measure time = 105 ms (allowed 150 ms), total time = 1671 ms
17-03-18 04:28:18.204 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:18.254 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 04:28:18.254 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:18.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:18.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:18.254 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:18.254 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:18.254 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:18.254 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:18.254 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:18.254 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:18.264 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:18.264 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:18.264 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:18.264 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:28:18.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:18.314 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:18.374 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.020806,
17-03-18 04:28:18.614 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:18.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:18.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:18.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:18.654 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:18.654 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:18.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:28:18.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:28:18.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:18.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:18.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:28:18.754 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:18.754 -07 000000608 INF: Autofocus start
17-03-18 04:28:18.754 -07 000000608 INF: MeasureProfile start
17-03-18 04:28:18.754 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:18.764 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:18.764 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:18.764 -07 000000608 INF: MeasureProfile done
17-03-18 04:28:18.764 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:28:18.764 -07 000000608 INF: Autofocus finished
17-03-18 04:28:18.964 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:18.964 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:18.964 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.138381812341625. ----------
17-03-18 04:28:18.964 -07 000000610 INF: Cycle	125	Tile	5	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:18.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28736, sync = True, waitForSettling = True)
17-03-18 04:28:18.974 -07 000000610 INF: Z Motor: Moving to -0.131545 mm, started at -0.138382 mm, distance = 6.84 um
17-03-18 04:28:18.974 -07 000000610 INF: FPGA: Xmit ZDACW 28736\n [Z Motor]
17-03-18 04:28:18.974 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:28:18.984 -07 000000610 INF: FPGA: 'ZDACW 28736' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:18.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:18.984 -07 000000474 INF: FPGA: Recv ZDACR 28736
17-03-18 04:28:18.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:18.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.144 -07 000000461 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:28:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.154 -07 000000561 INF: FPGA: Recv ZSGSRD 29769
17-03-18 04:28:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29765
17-03-18 04:28:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.174 -07 000000474 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:28:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.184 -07 000000461 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:28:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.194 -07 000000474 INF: FPGA: Recv ZSGSRD 29764
17-03-18 04:28:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.204 -07 000000611 INF: FPGA: Recv ZSGSRD 29756
17-03-18 04:28:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.214 -07 000000474 INF: FPGA: Recv ZSGSRD 29765
17-03-18 04:28:19.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.224 -07 000000461 INF: FPGA: Recv ZSGSRD 29764
17-03-18 04:28:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:19.234 -07 000000474 INF: FPGA: Recv ZSGSRD 29769
17-03-18 04:28:19.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:19.244 -07 000000608 INF: FPGA: Recv ZPIEZORD 25178
17-03-18 04:28:19.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:19.254 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -10.1 V.
17-03-18 04:28:19.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29765 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29756 (-130.7 uncal um), Max = 29774 (-130.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:28:19.254 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29765, posNoise = 9, negNoise = 9
17-03-18 04:28:19.254 -07 000000610 INF: Z Motor: After move to -0.131545, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:19.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:28:19.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:19.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:19.254 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:19.254 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:19.254 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:19.254 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:19.254 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:19.254 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:19.254 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:19.254 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:19.254 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:19.254 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:19.264 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:28:19.264 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:19.264 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:19.264 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:19.274 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:19.274 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:19.274 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:28:19.274 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:19.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28913 150\n [Camera]
17-03-18 04:28:19.474 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:19.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:19.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:19.894 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:19.904 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:19.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:19.904 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:19.904 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:19.904 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:19.904 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:19.904 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:28:20.084 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28913 806
17-03-18 04:28:20.234 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:20.294 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:28:20.294 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:28:20.294 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:20.304 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:20.304 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:28:20.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:28:20.304 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:28:20.304 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:20.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:20.314 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:28:20.444 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:20.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:20.444 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:20.444 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:20.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:20.444 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:20.444 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:20.444 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:28:20.454 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:20.454 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:28:20.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:20.634 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:20.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28913 150' command took 2 ms to send, 1352 ms to get response, and 1357 ms overall
17-03-18 04:28:20.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:20.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.13154002641065. ------
17-03-18 04:28:20.634 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:20.634 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13761 mm
17-03-18 04:28:20.634 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:20.764 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:28:20.764 -07 000000461 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:28:20.764 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:20.764 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30061, sync = True, waitForSettling = False)
17-03-18 04:28:20.764 -07 000000611 INF: Z Motor: Moving to -0.137610 mm, started at -0.131540 mm, distance = -6.07 um
17-03-18 04:28:20.774 -07 000000611 INF: FPGA: Xmit ZDACW 30061\n [Z Motor]
17-03-18 04:28:20.854 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:28:20.854 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:28:20.854 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:20.854 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:28:20.854 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:28:20.854 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:20.854 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:20.854 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:28:20.854 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:20.864 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:28:20.874 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:20.874 -07 000000467 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:28:20.874 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:28:20.874 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 100 ms to get response, and 109 ms overall
17-03-18 04:28:20.874 -07 000000461 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:20.874 -07 000000461 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:20.874 -07 000000461 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:28:20.874 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:20.874 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 111 ms to get response, and 232 ms overall
17-03-18 04:28:20.874 -07 000000611 INF: FPGA: 'ZDACW 30061' command took 0 ms to send, 90 ms to get response, and 108 ms overall
17-03-18 04:28:20.884 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:20.894 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:20.894 -07 000000012 INF: FPGA: Recv ZDACR 30061
17-03-18 04:28:20.904 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:28:20.904 -07 000000611 INF: Z Motor: MoveAbsStepped took 138 ms (did NOT wait for settling yet))
17-03-18 04:28:21.084 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:21.084 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 04:28:21.244 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:28:21.244 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 04:28:21.294 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:21.304 -07 000000444 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:28:21.304 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:28:21.304 -07 000000461 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:21.304 -07 000000461 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 04:28:21.304 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.839 mm, average velocity = 2.208 mm/sec
17-03-18 04:28:21.674 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:21.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:22.254 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:22.254 -07 000000611 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:28:22.264 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.264 -07 000000461 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:22.284 -07 000000461 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:22.284 -07 000000461 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:22.284 -07 000000461 INF: Y Motor: Moved to 64.0566 after 1527 ms (table move)
17-03-18 04:28:22.294 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137610 mm (DAC = 30061)
17-03-18 04:28:22.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.294 -07 000000501 INF: FPGA: Recv ZSGSRD 30715
17-03-18 04:28:22.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:22.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.304 -07 000000585 INF: FPGA: Recv ZSGSRD 30713
17-03-18 04:28:22.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.314 -07 000000502 INF: FPGA: Recv ZSGSRD 30705
17-03-18 04:28:22.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.324 -07 000000444 INF: FPGA: Recv ZSGSRD 30707
17-03-18 04:28:22.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.334 -07 000000012 INF: FPGA: Recv ZSGSRD 30709
17-03-18 04:28:22.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:28:22.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:22.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.354 -07 000000501 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:28:22.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.364 -07 000000487 INF: FPGA: Recv ZSGSRD 30708
17-03-18 04:28:22.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.374 -07 000000467 INF: FPGA: Recv ZSGSRD 30714
17-03-18 04:28:22.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.384 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:22.384 -07 000000438 INF: FPGA: Recv ZSGSRD 30716
17-03-18 04:28:22.394 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.394 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:22.394 -07 000000611 INF: FPGA: Recv ZPIEZORD 26452
17-03-18 04:28:22.404 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:22.404 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.4 V.
17-03-18 04:28:22.404 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30711 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30711 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30705 (-136.8 uncal um), Max = 30716 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:28:22.404 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30711, posNoise = 5, negNoise = 6
17-03-18 04:28:22.404 -07 000000561 INF: Z Motor: After move to -0.137610, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:22.404 -07 000000561 INF: Z Motor: Settle wait time = 1529 ms, measure time = 110 ms (allowed 150 ms), total time = 1639 ms
17-03-18 04:28:22.404 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:22.444 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1802 ms
17-03-18 04:28:22.444 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:22.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:22.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:22.444 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:22.444 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:22.444 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:22.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:22.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:28:22.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:22.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:22.454 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:22.454 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:22.454 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:28:22.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:22.504 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 04:28:22.804 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 04:28:22.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 04:28:22.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:22.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:22.844 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:22.844 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:22.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:28:22.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:28:22.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:22.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:22.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:28:22.944 -07 000000462 INF: Autofocus start
17-03-18 04:28:22.944 -07 000000462 INF: MeasureProfile start
17-03-18 04:28:22.944 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:22.944 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:22.954 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:22.954 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:22.954 -07 000000462 INF: MeasureProfile done
17-03-18 04:28:22.954 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:28:22.954 -07 000000462 INF: Autofocus finished
17-03-18 04:28:23.154 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:23.154 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:23.154 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.137617331096756. ----------
17-03-18 04:28:23.154 -07 000000610 INF: Cycle	125	Tile	6	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:23.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28585, sync = True, waitForSettling = True)
17-03-18 04:28:23.164 -07 000000610 INF: Z Motor: Moving to -0.130854 mm, started at -0.137617 mm, distance = 6.76 um
17-03-18 04:28:23.164 -07 000000610 INF: FPGA: Xmit ZDACW 28585\n [Z Motor]
17-03-18 04:28:23.164 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:28:23.174 -07 000000610 INF: FPGA: 'ZDACW 28585' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:23.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:23.174 -07 000000487 INF: FPGA: Recv ZDACR 28585
17-03-18 04:28:23.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:23.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.334 -07 000000611 INF: FPGA: Recv ZSGSRD 29653
17-03-18 04:28:23.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:23.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.344 -07 000000626 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:28:23.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.354 -07 000000012 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:28:23.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.364 -07 000000438 INF: FPGA: Recv ZSGSRD 29662
17-03-18 04:28:23.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.374 -07 000000608 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:28:23.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.384 -07 000000455 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:28:23.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.394 -07 000000626 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:28:23.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.404 -07 000000424 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:28:23.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.424 -07 000000502 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:28:23.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:28:23.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:23.434 -07 000000626 INF: FPGA: Recv ZSGSRD 29660
17-03-18 04:28:23.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:23.444 -07 000000012 INF: FPGA: Recv ZPIEZORD 25073
17-03-18 04:28:23.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:23.454 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.1 V.
17-03-18 04:28:23.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29658 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29659 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29653 (-130.0 uncal um), Max = 29662 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:23.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29658, posNoise = 4, negNoise = 5
17-03-18 04:28:23.454 -07 000000610 INF: Z Motor: After move to -0.130854, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:23.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:28:23.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:23.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:23.454 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:23.454 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:23.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:23.454 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:23.454 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:23.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:28:23.454 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:23.454 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:23.454 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:28:23.454 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:23.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:23.464 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:23.464 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:23.464 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:23.474 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:28:23.474 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:28:23.474 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:28:23.474 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:23.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28762 150\n [Camera]
17-03-18 04:28:23.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:23.744 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.0344,
17-03-18 04:28:24.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:24.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:24.094 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:24.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:24.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:24.094 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:24.094 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:24.094 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:28:24.094 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:24.094 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:24.284 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28762 806
17-03-18 04:28:24.434 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:24.494 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:28:24.494 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:28:24.494 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:24.504 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:28:24.504 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:28:24.504 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:24.504 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:24.504 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:28:24.504 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:24.514 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:28:24.634 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:24.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:24.644 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:24.644 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:24.644 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:28:24.644 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:24.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:24.644 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:24.644 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:24.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:28:24.834 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:28:24.834 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:24.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28762 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-18 04:28:24.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:24.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.130852635711481. ------
17-03-18 04:28:24.834 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:24.834 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13740 mm
17-03-18 04:28:24.834 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:24.844 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:28:24.844 -07 000000487 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:28:24.844 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:24.844 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30015, sync = True, waitForSettling = False)
17-03-18 04:28:24.844 -07 000000626 INF: Z Motor: Moving to -0.137400 mm, started at -0.130853 mm, distance = -6.55 um
17-03-18 04:28:24.854 -07 000000626 INF: FPGA: Xmit ZDACW 30015\n [Z Motor]
17-03-18 04:28:25.044 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:28:25.044 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:28:25.044 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:25.044 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:28:25.044 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:28:25.044 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:25.054 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:25.054 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:28:25.054 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:25.064 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:28:25.064 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:25.064 -07 000000611 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:28:25.064 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:28:25.064 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 221 ms to get response, and 225 ms overall
17-03-18 04:28:25.064 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 220 ms overall
17-03-18 04:28:25.064 -07 000000487 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:25.064 -07 000000487 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:25.064 -07 000000487 INF: Y Motor: Moving 1338 steps-12
17-03-18 04:28:25.064 -07 000000626 INF: FPGA: 'ZDACW 30015' command took 0 ms to send, 203 ms to get response, and 219 ms overall
17-03-18 04:28:25.064 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:25.074 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:25.084 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:25.084 -07 000000611 INF: FPGA: Recv ZDACR 30015
17-03-18 04:28:25.094 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:28:25.094 -07 000000626 INF: Z Motor: MoveAbsStepped took 246 ms (did NOT wait for settling yet))
17-03-18 04:28:25.264 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:25.264 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 04:28:25.444 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:28:25.444 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:28:25.494 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:25.494 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:28:25.504 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:25.504 -07 000000487 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:25.504 -07 000000487 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:28:25.504 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.836 mm, average velocity = 2.177 mm/sec
17-03-18 04:28:26.454 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:26.454 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:28:26.464 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:26.464 -07 000000487 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:26.494 -07 000000487 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:26.494 -07 000000487 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:26.494 -07 000000487 INF: Y Motor: Moved to 64.8784 after 1648 ms (table move)
17-03-18 04:28:26.494 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137400 mm (DAC = 30015)
17-03-18 04:28:26.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.494 -07 000000012 INF: FPGA: Recv ZSGSRD 30681
17-03-18 04:28:26.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:26.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.504 -07 000000561 INF: FPGA: Recv ZSGSRD 30681
17-03-18 04:28:26.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.514 -07 000000487 INF: FPGA: Recv ZSGSRD 30680
17-03-18 04:28:26.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.524 -07 000000611 INF: FPGA: Recv ZSGSRD 30674
17-03-18 04:28:26.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.534 -07 000000424 INF: FPGA: Recv ZSGSRD 30683
17-03-18 04:28:26.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.544 -07 000000611 INF: FPGA: Recv ZSGSRD 30680
17-03-18 04:28:26.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.554 -07 000000561 INF: FPGA: Recv ZSGSRD 30679
17-03-18 04:28:26.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30668
17-03-18 04:28:26.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.574 -07 000000461 INF: FPGA: Recv ZSGSRD 30670
17-03-18 04:28:26.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:26.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30684
17-03-18 04:28:26.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.594 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:26.594 -07 000000461 INF: FPGA: Recv ZPIEZORD 26385
17-03-18 04:28:26.604 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:26.604 -07 000000467 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -9.4 V.
17-03-18 04:28:26.604 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30678 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30680 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30668 (-136.5 uncal um), Max = 30684 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:28:26.604 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30678, posNoise = 6, negNoise = 10
17-03-18 04:28:26.604 -07 000000467 INF: Z Motor: After move to -0.137400, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:26.604 -07 000000467 INF: Z Motor: Settle wait time = 1651 ms, measure time = 105 ms (allowed 150 ms), total time = 1756 ms
17-03-18 04:28:26.604 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:26.654 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-18 04:28:26.654 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:26.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:26.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:26.654 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:26.654 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:26.654 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:26.654 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:26.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:26.664 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:26.664 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:26.664 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:26.674 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:26.674 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:28:26.674 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:28:26.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:26.724 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:27.024 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:27.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:27.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:27.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:28:27.064 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:27.064 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:27.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:28:27.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:28:27.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:27.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:28:27.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:28:27.164 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:27.164 -07 000000424 INF: Autofocus start
17-03-18 04:28:27.164 -07 000000424 INF: MeasureProfile start
17-03-18 04:28:27.164 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:27.174 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:27.174 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:27.184 -07 000000424 INF: MeasureProfile done
17-03-18 04:28:27.184 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:28:27.184 -07 000000424 INF: Autofocus finished
17-03-18 04:28:27.374 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:27.374 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:27.374 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137405332096078. ----------
17-03-18 04:28:27.374 -07 000000610 INF: Cycle	125	Tile	7	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:27.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28510, sync = True, waitForSettling = True)
17-03-18 04:28:27.384 -07 000000610 INF: Z Motor: Moving to -0.130510 mm, started at -0.137405 mm, distance = 6.89 um
17-03-18 04:28:27.384 -07 000000610 INF: FPGA: Xmit ZDACW 28510\n [Z Motor]
17-03-18 04:28:27.384 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:28:27.394 -07 000000610 INF: FPGA: 'ZDACW 28510' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:27.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:27.394 -07 000000467 INF: FPGA: Recv ZDACR 28510
17-03-18 04:28:27.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:27.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.554 -07 000000487 INF: FPGA: Recv ZSGSRD 29609
17-03-18 04:28:27.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:27.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.564 -07 000000561 INF: FPGA: Recv ZSGSRD 29606
17-03-18 04:28:27.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29608
17-03-18 04:28:27.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.584 -07 000000467 INF: FPGA: Recv ZSGSRD 29611
17-03-18 04:28:27.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.594 -07 000000487 INF: FPGA: Recv ZSGSRD 29601
17-03-18 04:28:27.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.604 -07 000000561 INF: FPGA: Recv ZSGSRD 29601
17-03-18 04:28:27.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.614 -07 000000611 INF: FPGA: Recv ZSGSRD 29605
17-03-18 04:28:27.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.624 -07 000000012 INF: FPGA: Recv ZSGSRD 29609
17-03-18 04:28:27.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.634 -07 000000626 INF: FPGA: Recv ZSGSRD 29612
17-03-18 04:28:27.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:27.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29603
17-03-18 04:28:27.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:27.654 -07 000000012 INF: FPGA: Recv ZPIEZORD 25016
17-03-18 04:28:27.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:27.664 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -10.1 V.
17-03-18 04:28:27.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29606 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29607 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29601 (-129.7 uncal um), Max = 29612 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:27.664 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29606, posNoise = 6, negNoise = 5
17-03-18 04:28:27.664 -07 000000610 INF: Z Motor: After move to -0.130510, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:27.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:28:27.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:27.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:27.664 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:27.664 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:27.664 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:27.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:27.664 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:27.664 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:27.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:28:27.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:27.664 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:27.664 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:27.674 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:27.674 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:27.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:27.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:27.684 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:28:27.684 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:27.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:28:27.684 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:28:27.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28686 150\n [Camera]
17-03-18 04:28:27.884 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:28.304 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:28.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:28.304 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:28.304 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:28.304 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:28:28.314 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:28.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:28.314 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:28.314 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:28.314 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:28:28.494 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28686 806
17-03-18 04:28:28.644 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:28.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:28:28.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:28:28.684 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:28.684 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:28:28.684 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:28:28.684 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:28.684 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:28.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:28:28.694 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:28:28.704 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:28:28.844 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:28.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:28.854 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:28.854 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:28.854 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:28:28.854 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:28.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:28.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:28.854 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:28.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:28:29.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:29.044 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:29.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28686 150' command took 2 ms to send, 1352 ms to get response, and 1358 ms overall
17-03-18 04:28:29.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:29.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.13051857668011. ------
17-03-18 04:28:29.044 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:29.044 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13715 mm
17-03-18 04:28:29.044 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:29.164 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:29.164 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:28:29.164 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:28:29.164 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29960, sync = True, waitForSettling = False)
17-03-18 04:28:29.164 -07 000000424 INF: Z Motor: Moving to -0.137148 mm, started at -0.130519 mm, distance = -6.63 um
17-03-18 04:28:29.174 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 04:28:29.184 -07 000000424 INF: FPGA: Xmit ZDACW 29960\n [Z Motor]
17-03-18 04:28:29.184 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.023489,
17-03-18 04:28:29.184 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:28:29.194 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:29.194 -07 000000424 INF: FPGA: 'ZDACW 29960' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:28:29.194 -07 000000591 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:28:29.204 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:29.204 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:28:29.204 -07 000000438 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:29.204 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:29.204 -07 000000438 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:28:29.224 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:29.234 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:29.254 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:28:29.254 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:28:29.254 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:29.254 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:28:29.254 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:28:29.254 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:29.264 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:29.264 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:28:29.264 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:28:29.264 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:28:29.274 -07 000000585 INF: FPGA: Recv ZDACR 29960
17-03-18 04:28:29.274 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 41 ms to get response, and 81 ms overall
17-03-18 04:28:29.274 -07 000000424 INF: Z Motor: MoveAbsStepped took 102 ms (did NOT wait for settling yet))
17-03-18 04:28:29.404 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:29.404 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 04:28:29.604 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:28:29.604 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 408 ms overall
17-03-18 04:28:29.654 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:29.654 -07 000000626 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:28:29.664 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:29.664 -07 000000438 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:29.664 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:28:29.664 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.844 mm, average velocity = 2.069 mm/sec
17-03-18 04:28:30.614 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:30.614 -07 000000585 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:28:30.624 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:30.624 -07 000000438 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:30.654 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:30.654 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:30.654 -07 000000438 INF: Y Motor: Moved to 65.7134 after 1487 ms (table move)
17-03-18 04:28:30.664 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137148 mm (DAC = 29960)
17-03-18 04:28:30.664 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.664 -07 000000626 INF: FPGA: Recv ZSGSRD 30644
17-03-18 04:28:30.674 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.674 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.674 -07 000000424 INF: FPGA: Recv ZSGSRD 30636
17-03-18 04:28:30.684 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.684 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.684 -07 000000611 INF: FPGA: Recv ZSGSRD 30635
17-03-18 04:28:30.694 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.694 -07 000000626 INF: FPGA: Recv ZSGSRD 30630
17-03-18 04:28:30.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.704 -07 000000424 INF: FPGA: Recv ZSGSRD 30641
17-03-18 04:28:30.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.714 -07 000000424 INF: FPGA: Recv ZSGSRD 30635
17-03-18 04:28:30.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.724 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.724 -07 000000424 INF: FPGA: Recv ZSGSRD 30631
17-03-18 04:28:30.734 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.734 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.734 -07 000000611 INF: FPGA: Recv ZSGSRD 30640
17-03-18 04:28:30.744 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.744 -07 000000438 INF: FPGA: Recv ZSGSRD 30643
17-03-18 04:28:30.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:30.754 -07 000000626 INF: FPGA: Recv ZSGSRD 30641
17-03-18 04:28:30.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.764 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:30.764 -07 000000438 INF: FPGA: Recv ZPIEZORD 26373
17-03-18 04:28:30.774 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:30.774 -07 000000461 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.4 V.
17-03-18 04:28:30.774 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30638 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30638 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30630 (-136.3 uncal um), Max = 30644 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:28:30.774 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30638, posNoise = 6, negNoise = 8
17-03-18 04:28:30.774 -07 000000461 INF: Z Motor: After move to -0.137148, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:30.774 -07 000000461 INF: Z Motor: Settle wait time = 1490 ms, measure time = 112 ms (allowed 150 ms), total time = 1602 ms
17-03-18 04:28:30.774 -07 000000461 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:30.814 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1762 ms
17-03-18 04:28:30.814 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:30.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:30.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:30.814 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:30.814 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:30.814 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:30.814 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:30.814 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:30.814 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:30.824 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:30.824 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:30.834 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:28:30.834 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:28:30.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:30.884 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:31.184 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:31.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:31.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:31.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:31.224 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:31.224 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:31.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 04:28:31.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:28:31.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:31.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:31.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:28:31.324 -07 000000611 INF: Autofocus start
17-03-18 04:28:31.324 -07 000000611 INF: MeasureProfile start
17-03-18 04:28:31.324 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:31.324 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:31.334 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:31.334 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:31.334 -07 000000611 INF: MeasureProfile done
17-03-18 04:28:31.334 -07 000000611 INF: X=23  Z correction [um]=0.08669062
17-03-18 04:28:31.334 -07 000000611 INF: Autofocus finished
17-03-18 04:28:31.534 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:31.534 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:31.534 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137148363610407. ----------
17-03-18 04:28:31.534 -07 000000610 INF: Cycle	125	Tile	8	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:31.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28492, sync = True, waitForSettling = True)
17-03-18 04:28:31.544 -07 000000610 INF: Z Motor: Moving to -0.130428 mm, started at -0.137148 mm, distance = 6.72 um
17-03-18 04:28:31.544 -07 000000610 INF: FPGA: Xmit ZDACW 28492\n [Z Motor]
17-03-18 04:28:31.544 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:28:31.554 -07 000000610 INF: FPGA: 'ZDACW 28492' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:31.554 -07 000000585 INF: FPGA: Recv ZDACR 28492
17-03-18 04:28:31.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:31.674 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:31.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:31.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.714 -07 000000444 INF: FPGA: Recv ZSGSRD 29596
17-03-18 04:28:31.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:31.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.724 -07 000000608 INF: FPGA: Recv ZSGSRD 29601
17-03-18 04:28:31.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:31.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.734 -07 000000611 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:28:31.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.744 -07 000000444 INF: FPGA: Recv ZSGSRD 29589
17-03-18 04:28:31.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.754 -07 000000626 INF: FPGA: Recv ZSGSRD 29596
17-03-18 04:28:31.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.764 -07 000000438 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:28:31.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.774 -07 000000585 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:28:31.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.784 -07 000000424 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:28:31.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.794 -07 000000461 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:28:31.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:31.804 -07 000000438 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:28:31.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:31.814 -07 000000626 INF: FPGA: Recv ZPIEZORD 25049
17-03-18 04:28:31.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:31.824 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 04:28:31.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29589 (-129.6 uncal um), Max = 29601 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:31.824 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 7, negNoise = 5
17-03-18 04:28:31.824 -07 000000610 INF: Z Motor: After move to -0.130428, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:31.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:28:31.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:31.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:31.824 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:31.824 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:31.824 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:31.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:31.824 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:31.824 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:31.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:31.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:31.824 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:31.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:31.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:28:31.824 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:31.834 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:31.834 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:31.834 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:28:31.834 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:28:31.844 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:31.844 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:31.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28669 150\n [Camera]
17-03-18 04:28:32.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:32.464 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:32.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:32.464 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:32.464 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:32.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:32.464 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:32.464 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:32.464 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:32.474 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:32.474 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:28:32.654 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28669 806
17-03-18 04:28:32.804 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:28:32.844 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:28:32.844 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:28:32.844 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:32.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 04:28:32.844 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 04:28:32.844 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:32.844 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:32.844 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:28:32.844 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:32.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:28:33.014 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:33.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:33.014 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:33.014 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:33.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:33.014 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:33.014 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:33.014 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:28:33.024 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:33.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:28:33.194 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:28:33.194 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:33.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28669 150' command took 2 ms to send, 1349 ms to get response, and 1357 ms overall
17-03-18 04:28:33.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:33.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130441486134409. ------
17-03-18 04:28:33.324 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13684 mm
17-03-18 04:28:33.324 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:33.324 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:33.324 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:28:33.324 -07 000000611 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:28:33.324 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29894, sync = True, waitForSettling = False)
17-03-18 04:28:33.334 -07 000000626 INF: Z Motor: Moving to -0.136846 mm, started at -0.130441 mm, distance = -6.40 um
17-03-18 04:28:33.334 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:33.334 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:33.334 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:33.334 -07 000000474 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:28:33.344 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:33.344 -07 000000611 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:33.344 -07 000000626 INF: FPGA: Xmit ZDACW 29894\n [Z Motor]
17-03-18 04:28:33.344 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:28:33.344 -07 000000611 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:33.344 -07 000000611 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:28:33.354 -07 000000626 INF: FPGA: 'ZDACW 29894' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:28:33.354 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:33.364 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:33.374 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:33.374 -07 000000487 INF: FPGA: Recv ZDACR 29894
17-03-18 04:28:33.384 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:33.384 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:28:33.414 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:28:33.414 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:28:33.414 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:33.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:28:33.414 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:28:33.414 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:33.414 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:33.414 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:28:33.414 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:33.424 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:28:33.554 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:33.554 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 04:28:33.734 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:28:33.734 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 04:28:33.784 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:33.784 -07 000000474 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:28:33.794 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:33.794 -07 000000611 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:33.794 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:28:33.794 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.157 mm/sec
17-03-18 04:28:34.624 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.985358,
17-03-18 04:28:34.744 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:34.744 -07 000000424 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:28:34.754 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:34.754 -07 000000611 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:34.784 -07 000000611 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:34.784 -07 000000611 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:28:34.784 -07 000000611 INF: Y Motor: Moved to 66.5386 after 1452 ms (table move)
17-03-18 04:28:34.784 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136846 mm (DAC = 29894)
17-03-18 04:28:34.784 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.784 -07 000000487 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:28:34.794 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:34.794 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.794 -07 000000585 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:28:34.804 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.804 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:28:34.814 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.814 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.814 -07 000000611 INF: FPGA: Recv ZSGSRD 30600
17-03-18 04:28:34.824 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.824 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.824 -07 000000474 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:28:34.834 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.834 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.834 -07 000000611 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:28:34.844 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.844 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.844 -07 000000585 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:28:34.854 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.854 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.854 -07 000000611 INF: FPGA: Recv ZSGSRD 30584
17-03-18 04:28:34.864 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.864 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.864 -07 000000585 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:28:34.874 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:34.874 -07 000000611 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:28:34.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.884 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:34.884 -07 000000474 INF: FPGA: Recv ZPIEZORD 26392
17-03-18 04:28:34.894 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:34.894 -07 000000444 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.2 V.
17-03-18 04:28:34.894 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30592 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30593 (-136.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30582 (-136.0 uncal um), Max = 30600 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:28:34.894 -07 000000444 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30592, posNoise = 8, negNoise = 10
17-03-18 04:28:34.894 -07 000000444 INF: Z Motor: After move to -0.136846, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:34.894 -07 000000444 INF: Z Motor: Settle wait time = 1456 ms, measure time = 104 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:28:34.894 -07 000000444 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:34.944 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:28:34.944 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:34.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:34.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:34.944 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:34.954 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:34.954 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:34.954 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:34.954 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:34.954 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:34.954 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:34.954 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:34.964 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:28:34.964 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:28:34.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:35.014 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:35.314 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:35.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:35.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:35.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:35.354 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:35.354 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:35.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 390 ms overall
17-03-18 04:28:35.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:28:35.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:35.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:35.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:28:35.454 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:35.454 -07 000000461 INF: Autofocus start
17-03-18 04:28:35.454 -07 000000461 INF: MeasureProfile start
17-03-18 04:28:35.454 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:35.464 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:35.464 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:35.464 -07 000000461 INF: MeasureProfile done
17-03-18 04:28:35.464 -07 000000461 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:28:35.464 -07 000000461 INF: Autofocus finished
17-03-18 04:28:35.664 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:35.664 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:35.664 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136852849851886. ----------
17-03-18 04:28:35.664 -07 000000610 INF: Cycle	125	Tile	9	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:35.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28435, sync = True, waitForSettling = True)
17-03-18 04:28:35.674 -07 000000610 INF: Z Motor: Moving to -0.130167 mm, started at -0.136853 mm, distance = 6.69 um
17-03-18 04:28:35.674 -07 000000610 INF: FPGA: Xmit ZDACW 28435\n [Z Motor]
17-03-18 04:28:35.674 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:28:35.684 -07 000000610 INF: FPGA: 'ZDACW 28435' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:35.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:35.684 -07 000000474 INF: FPGA: Recv ZDACR 28435
17-03-18 04:28:35.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.844 -07 000000611 INF: FPGA: Recv ZSGSRD 29546
17-03-18 04:28:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.854 -07 000000444 INF: FPGA: Recv ZSGSRD 29559
17-03-18 04:28:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.864 -07 000000585 INF: FPGA: Recv ZSGSRD 29551
17-03-18 04:28:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.874 -07 000000474 INF: FPGA: Recv ZSGSRD 29555
17-03-18 04:28:35.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.884 -07 000000611 INF: FPGA: Recv ZSGSRD 29552
17-03-18 04:28:35.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.894 -07 000000487 INF: FPGA: Recv ZSGSRD 29551
17-03-18 04:28:35.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.904 -07 000000611 INF: FPGA: Recv ZSGSRD 29549
17-03-18 04:28:35.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.914 -07 000000487 INF: FPGA: Recv ZSGSRD 29552
17-03-18 04:28:35.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29553
17-03-18 04:28:35.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:35.934 -07 000000487 INF: FPGA: Recv ZSGSRD 29556
17-03-18 04:28:35.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:35.944 -07 000000461 INF: FPGA: Recv ZPIEZORD 24995
17-03-18 04:28:35.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:35.954 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -10.0 V.
17-03-18 04:28:35.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29552 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29552 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29546 (-129.4 uncal um), Max = 29559 (-129.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:28:35.954 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29552, posNoise = 7, negNoise = 6
17-03-18 04:28:35.954 -07 000000610 INF: Z Motor: After move to -0.130167, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:35.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:28:35.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:35.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:35.954 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:35.954 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:35.954 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:35.954 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:35.954 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:35.954 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:35.954 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:35.954 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:35.954 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:35.954 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:35.964 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:35.964 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:35.964 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:28:35.964 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:35.974 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:28:35.974 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:35.974 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:28:35.974 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:35.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28611 150\n [Camera]
17-03-18 04:28:36.174 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:36.594 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:36.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:36.594 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:36.594 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:36.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:36.594 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:36.594 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:36.594 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:28:36.594 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:36.594 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:36.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:36.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:36.784 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28611 806
17-03-18 04:28:36.934 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:36.974 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:28:36.974 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:28:36.974 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:36.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:28:36.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:28:36.974 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:36.984 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:36.984 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:28:36.984 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:36.994 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:28:37.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:37.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:37.134 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:37.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:37.144 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:37.144 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:28:37.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:37.144 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:37.144 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:37.144 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:28:37.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:28:37.334 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:37.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28611 150' command took 2 ms to send, 1350 ms to get response, and 1357 ms overall
17-03-18 04:28:37.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:37.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130171669224455. ------
17-03-18 04:28:37.334 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:37.334 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13698 mm
17-03-18 04:28:37.334 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:37.334 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:37.344 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:37.344 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:28:37.344 -07 000000585 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 04:28:37.344 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:37.344 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29924, sync = True, waitForSettling = False)
17-03-18 04:28:37.344 -07 000000461 INF: Z Motor: Moving to -0.136983 mm, started at -0.130172 mm, distance = -6.81 um
17-03-18 04:28:37.344 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:28:37.354 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:37.354 -07 000000585 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:37.354 -07 000000585 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:37.354 -07 000000585 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:28:37.354 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:37.364 -07 000000461 INF: FPGA: Xmit ZDACW 29924\n [Z Motor]
17-03-18 04:28:37.364 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:28:37.374 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:37.374 -07 000000461 INF: FPGA: 'ZDACW 29924' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:37.384 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:37.384 -07 000000467 INF: FPGA: Recv ZDACR 29924
17-03-18 04:28:37.394 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:28:37.394 -07 000000461 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:28:37.534 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:28:37.534 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:28:37.534 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:37.534 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:28:37.534 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:28:37.534 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:37.534 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:37.544 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:37.544 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:28:37.544 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:28:37.554 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:37.554 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:28:37.744 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:28:37.744 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:28:37.794 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:37.804 -07 000000487 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:28:37.804 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:37.804 -07 000000585 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:37.804 -07 000000585 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:28:37.804 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 04:28:38.754 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:38.754 -07 000000474 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:28:38.764 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.764 -07 000000585 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:38.794 -07 000000585 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:38.794 -07 000000585 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:38.794 -07 000000585 INF: Y Motor: Moved to 67.3711 after 1449 ms (table move)
17-03-18 04:28:38.794 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136983 mm (DAC = 29924)
17-03-18 04:28:38.794 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.804 -07 000000444 INF: FPGA: Recv ZSGSRD 30611
17-03-18 04:28:38.804 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:28:38.804 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.804 -07 000000608 INF: FPGA: Recv ZSGSRD 30609
17-03-18 04:28:38.814 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.814 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.814 -07 000000455 INF: FPGA: Recv ZSGSRD 30614
17-03-18 04:28:38.824 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.824 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.824 -07 000000424 INF: FPGA: Recv ZSGSRD 30616
17-03-18 04:28:38.834 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.834 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.834 -07 000000012 INF: FPGA: Recv ZSGSRD 30611
17-03-18 04:28:38.844 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.844 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30607
17-03-18 04:28:38.854 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.854 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.854 -07 000000487 INF: FPGA: Recv ZSGSRD 30609
17-03-18 04:28:38.864 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.864 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.864 -07 000000626 INF: FPGA: Recv ZSGSRD 30613
17-03-18 04:28:38.874 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.874 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.874 -07 000000462 INF: FPGA: Recv ZSGSRD 30614
17-03-18 04:28:38.884 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.884 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:38.884 -07 000000438 INF: FPGA: Recv ZSGSRD 30615
17-03-18 04:28:38.894 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.894 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:38.894 -07 000000501 INF: FPGA: Recv ZPIEZORD 26407
17-03-18 04:28:38.904 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:38.904 -07 000000611 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.2 V.
17-03-18 04:28:38.904 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30612 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30612 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30607 (-136.2 uncal um), Max = 30616 (-136.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:38.904 -07 000000611 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30612, posNoise = 4, negNoise = 5
17-03-18 04:28:38.904 -07 000000611 INF: Z Motor: After move to -0.136983, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:38.904 -07 000000611 INF: Z Motor: Settle wait time = 1456 ms, measure time = 103 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:28:38.904 -07 000000611 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:38.954 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:28:38.954 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:38.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:38.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:38.954 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:38.954 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:38.954 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:38.954 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:38.954 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:38.954 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:38.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 9 ms.
17-03-18 04:28:38.964 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:38.984 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:28:38.984 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 25 ms.
17-03-18 04:28:38.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:39.034 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:39.324 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:39.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:39.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:39.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:28:39.364 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:39.364 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:39.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:28:39.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:28:39.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:39.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:28:39.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:28:39.474 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:39.474 -07 000000608 INF: Autofocus start
17-03-18 04:28:39.474 -07 000000608 INF: MeasureProfile start
17-03-18 04:28:39.474 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:39.484 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:39.484 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:39.484 -07 000000608 INF: MeasureProfile done
17-03-18 04:28:39.484 -07 000000608 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:28:39.484 -07 000000608 INF: Autofocus finished
17-03-18 04:28:39.684 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:39.684 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:39.684 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.136981334094721. ----------
17-03-18 04:28:39.694 -07 000000610 INF: Cycle	125	Tile	10	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:39.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28419, sync = True, waitForSettling = True)
17-03-18 04:28:39.694 -07 000000610 INF: Z Motor: Moving to -0.130094 mm, started at -0.136981 mm, distance = 6.89 um
17-03-18 04:28:39.694 -07 000000610 INF: FPGA: Xmit ZDACW 28419\n [Z Motor]
17-03-18 04:28:39.694 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:28:39.704 -07 000000610 INF: FPGA: 'ZDACW 28419' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:39.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:39.704 -07 000000561 INF: FPGA: Recv ZDACR 28419
17-03-18 04:28:39.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:39.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.864 -07 000000591 INF: FPGA: Recv ZSGSRD 29543
17-03-18 04:28:39.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:39.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.874 -07 000000462 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:28:39.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:28:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.894 -07 000000591 INF: FPGA: Recv ZSGSRD 29541
17-03-18 04:28:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.904 -07 000000447 INF: FPGA: Recv ZSGSRD 29536
17-03-18 04:28:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.914 -07 000000591 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:28:39.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.924 -07 000000447 INF: FPGA: Recv ZSGSRD 29544
17-03-18 04:28:39.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.934 -07 000000591 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:28:39.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.944 -07 000000447 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:28:39.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:39.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29541
17-03-18 04:28:39.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:39.964 -07 000000444 INF: FPGA: Recv ZPIEZORD 24971
17-03-18 04:28:39.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:39.974 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -10.0 V.
17-03-18 04:28:39.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29541 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29541 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29536 (-129.3 uncal um), Max = 29544 (-129.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:39.974 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29541, posNoise = 3, negNoise = 5
17-03-18 04:28:39.974 -07 000000610 INF: Z Motor: After move to -0.130094, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:39.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:28:39.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:39.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:39.974 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:39.974 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:39.974 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:39.974 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:39.974 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:39.974 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:39.974 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:28:39.974 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:39.974 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:39.974 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:39.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:28:39.984 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:39.984 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.979922,
17-03-18 04:28:39.984 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:39.984 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:39.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:28:39.994 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:39.994 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:39.994 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:40.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28595 150\n [Camera]
17-03-18 04:28:40.214 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:40.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:40.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:40.634 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:40.634 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:40.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:28:40.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:40.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:40.634 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:40.634 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:40.634 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:28:40.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28595 806
17-03-18 04:28:40.974 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:41.014 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:28:41.014 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:28:41.014 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:41.014 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:28:41.014 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:28:41.014 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:41.024 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:41.024 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:28:41.024 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:41.034 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:28:41.174 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:41.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:41.174 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:41.174 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:41.174 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:28:41.174 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:41.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:41.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:41.174 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:41.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:28:41.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:41.364 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:41.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28595 150' command took 2 ms to send, 1348 ms to get response, and 1374 ms overall
17-03-18 04:28:41.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:41.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130101002890895. ------
17-03-18 04:28:41.494 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:41.494 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13651 mm
17-03-18 04:28:41.494 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:41.494 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:41.494 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:28:41.494 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:28:41.494 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29820, sync = True, waitForSettling = False)
17-03-18 04:28:41.494 -07 000000487 INF: Z Motor: Moving to -0.136507 mm, started at -0.130101 mm, distance = -6.41 um
17-03-18 04:28:41.504 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:41.504 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:41.504 -07 000000467 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:28:41.514 -07 000000487 INF: FPGA: Xmit ZDACW 29820\n [Z Motor]
17-03-18 04:28:41.514 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:28:41.514 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:41.514 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:28:41.514 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:41.514 -07 000000591 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:28:41.524 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:41.524 -07 000000487 INF: FPGA: 'ZDACW 29820' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:28:41.534 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:41.544 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:41.544 -07 000000467 INF: FPGA: Recv ZDACR 29820
17-03-18 04:28:41.554 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:41.554 -07 000000487 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:28:41.574 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:28:41.574 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:28:41.574 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:41.574 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:28:41.574 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:28:41.574 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:41.584 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:41.584 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:28:41.584 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:28:41.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:28:41.674 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:41.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:41.724 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:41.724 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:28:41.904 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:28:41.904 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:28:41.954 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:41.954 -07 000000438 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:28:41.964 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:41.964 -07 000000591 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:41.964 -07 000000591 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:28:41.964 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.842 mm, average velocity = 2.136 mm/sec
17-03-18 04:28:42.914 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:42.914 -07 000000487 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:28:42.924 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:42.924 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:42.944 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:42.944 -07 000000591 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:28:42.944 -07 000000591 INF: Y Motor: Moved to 68.2046 after 1453 ms (table move)
17-03-18 04:28:42.954 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136507 mm (DAC = 29820)
17-03-18 04:28:42.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:42.954 -07 000000561 INF: FPGA: Recv ZSGSRD 30544
17-03-18 04:28:42.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:42.964 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:42.964 -07 000000591 INF: FPGA: Recv ZSGSRD 30537
17-03-18 04:28:42.974 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:42.974 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:42.974 -07 000000487 INF: FPGA: Recv ZSGSRD 30542
17-03-18 04:28:42.984 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:42.984 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:42.984 -07 000000591 INF: FPGA: Recv ZSGSRD 30538
17-03-18 04:28:42.994 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:42.994 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:42.994 -07 000000487 INF: FPGA: Recv ZSGSRD 30539
17-03-18 04:28:43.004 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.004 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:43.004 -07 000000591 INF: FPGA: Recv ZSGSRD 30535
17-03-18 04:28:43.014 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:43.014 -07 000000487 INF: FPGA: Recv ZSGSRD 30536
17-03-18 04:28:43.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:43.024 -07 000000591 INF: FPGA: Recv ZSGSRD 30537
17-03-18 04:28:43.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:43.034 -07 000000591 INF: FPGA: Recv ZSGSRD 30544
17-03-18 04:28:43.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:43.044 -07 000000591 INF: FPGA: Recv ZSGSRD 30540
17-03-18 04:28:43.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.054 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:43.054 -07 000000591 INF: FPGA: Recv ZPIEZORD 26297
17-03-18 04:28:43.064 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.064 -07 000000501 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.3 V.
17-03-18 04:28:43.064 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30539 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30538 (-135.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30535 (-135.7 uncal um), Max = 30544 (-135.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:28:43.064 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30539, posNoise = 5, negNoise = 4
17-03-18 04:28:43.064 -07 000000501 INF: Z Motor: After move to -0.136507, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:43.064 -07 000000501 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:28:43.064 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:43.114 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:28:43.114 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:43.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:43.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:43.124 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:43.124 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:43.124 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:43.124 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:43.124 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:43.124 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:43.134 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:43.134 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:43.144 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:28:43.144 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:28:43.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:43.194 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:43.494 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:43.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:43.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:43.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:43.534 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:43.534 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:43.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:28:43.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:28:43.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:43.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:43.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:28:43.634 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:43.634 -07 000000447 INF: Autofocus start
17-03-18 04:28:43.634 -07 000000447 INF: MeasureProfile start
17-03-18 04:28:43.634 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:43.644 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:43.644 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:43.644 -07 000000447 INF: MeasureProfile done
17-03-18 04:28:43.644 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:28:43.644 -07 000000447 INF: Autofocus finished
17-03-18 04:28:43.844 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:43.844 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:43.844 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136512366608373. ----------
17-03-18 04:28:43.854 -07 000000610 INF: Cycle	125	Tile	11	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:43.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28327, sync = True, waitForSettling = True)
17-03-18 04:28:43.854 -07 000000610 INF: Z Motor: Moving to -0.129673 mm, started at -0.136512 mm, distance = 6.84 um
17-03-18 04:28:43.854 -07 000000610 INF: FPGA: Xmit ZDACW 28327\n [Z Motor]
17-03-18 04:28:43.854 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:28:43.864 -07 000000610 INF: FPGA: 'ZDACW 28327' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:28:43.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:43.864 -07 000000591 INF: FPGA: Recv ZDACR 28327
17-03-18 04:28:43.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:43.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:44.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.024 -07 000000591 INF: FPGA: Recv ZSGSRD 29477
17-03-18 04:28:44.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:44.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.034 -07 000000474 INF: FPGA: Recv ZSGSRD 29479
17-03-18 04:28:44.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.044 -07 000000474 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:28:44.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.054 -07 000000474 INF: FPGA: Recv ZSGSRD 29471
17-03-18 04:28:44.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.064 -07 000000474 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:28:44.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.074 -07 000000474 INF: FPGA: Recv ZSGSRD 29482
17-03-18 04:28:44.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29473
17-03-18 04:28:44.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.094 -07 000000474 INF: FPGA: Recv ZSGSRD 29468
17-03-18 04:28:44.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29476
17-03-18 04:28:44.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:44.114 -07 000000474 INF: FPGA: Recv ZSGSRD 29476
17-03-18 04:28:44.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:44.124 -07 000000474 INF: FPGA: Recv ZPIEZORD 24913
17-03-18 04:28:44.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:44.134 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.0 V.
17-03-18 04:28:44.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29475 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29474 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29482 (-128.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:28:44.134 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29475, posNoise = 7, negNoise = 7
17-03-18 04:28:44.134 -07 000000610 INF: Z Motor: After move to -0.129673, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:44.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:28:44.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:44.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:44.134 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:44.134 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:44.134 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:44.134 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:44.134 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:44.134 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:44.134 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:44.134 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:44.134 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:44.134 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:44.134 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:44.134 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:44.134 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:44.144 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:44.144 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:28:44.144 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:44.144 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:44.144 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:44.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28504 150\n [Camera]
17-03-18 04:28:44.354 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:44.774 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:44.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:44.774 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:44.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:44.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:44.774 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:44.784 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:44.784 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:44.784 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:44.784 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:28:44.964 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28504 806
17-03-18 04:28:45.114 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:45.164 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:28:45.164 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:28:45.164 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:45.164 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:45.164 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:28:45.164 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:28:45.164 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:28:45.164 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:45.174 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:45.184 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:28:45.314 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:45.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:45.324 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:45.324 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:45.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:45.324 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:45.324 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:45.324 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:28:45.324 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:45.324 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:28:45.364 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.999021,
17-03-18 04:28:45.514 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:28:45.514 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:45.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28504 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:28:45.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:45.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129677004889539. ------
17-03-18 04:28:45.514 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:45.514 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13630 mm
17-03-18 04:28:45.514 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:45.524 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:28:45.524 -07 000000462 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 04:28:45.524 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:45.524 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29774, sync = True, waitForSettling = False)
17-03-18 04:28:45.524 -07 000000585 INF: Z Motor: Moving to -0.136297 mm, started at -0.129677 mm, distance = -6.62 um
17-03-18 04:28:45.534 -07 000000585 INF: FPGA: Xmit ZDACW 29774\n [Z Motor]
17-03-18 04:28:45.714 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:28:45.714 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:28:45.714 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:45.714 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:45.714 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:28:45.714 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:28:45.714 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:45.724 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:28:45.724 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:45.724 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:28:45.734 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:45.734 -07 000000487 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:28:45.734 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:28:45.734 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 205 ms to get response, and 215 ms overall
17-03-18 04:28:45.734 -07 000000462 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:45.734 -07 000000462 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:45.734 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:28:45.734 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 215 ms to get response, and 217 ms overall
17-03-18 04:28:45.734 -07 000000585 INF: FPGA: 'ZDACW 29774' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 04:28:45.744 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:45.754 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:45.764 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:45.764 -07 000000438 INF: FPGA: Recv ZDACR 29774
17-03-18 04:28:45.774 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 04:28:45.774 -07 000000585 INF: Z Motor: MoveAbsStepped took 249 ms (did NOT wait for settling yet))
17-03-18 04:28:45.944 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:45.944 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-18 04:28:46.124 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:28:46.124 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 391 ms overall
17-03-18 04:28:46.174 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:46.184 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:28:46.184 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:46.184 -07 000000462 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:46.184 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:28:46.184 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-18 04:28:46.674 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:46.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:47.134 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:47.134 -07 000000444 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:28:47.144 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.144 -07 000000462 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:47.174 -07 000000462 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:47.174 -07 000000462 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:28:47.174 -07 000000462 INF: Y Motor: Moved to 69.0269 after 1650 ms (table move)
17-03-18 04:28:47.174 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136297 mm (DAC = 29774)
17-03-18 04:28:47.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.174 -07 000000444 INF: FPGA: Recv ZSGSRD 30514
17-03-18 04:28:47.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:28:47.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.184 -07 000000462 INF: FPGA: Recv ZSGSRD 30509
17-03-18 04:28:47.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.194 -07 000000438 INF: FPGA: Recv ZSGSRD 30510
17-03-18 04:28:47.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.204 -07 000000444 INF: FPGA: Recv ZSGSRD 30510
17-03-18 04:28:47.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.214 -07 000000438 INF: FPGA: Recv ZSGSRD 30508
17-03-18 04:28:47.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.224 -07 000000585 INF: FPGA: Recv ZSGSRD 30508
17-03-18 04:28:47.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.234 -07 000000438 INF: FPGA: Recv ZSGSRD 30502
17-03-18 04:28:47.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.244 -07 000000462 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:28:47.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.254 -07 000000608 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:28:47.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.264 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:47.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30505
17-03-18 04:28:47.274 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.274 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:47.274 -07 000000608 INF: FPGA: Recv ZPIEZORD 26299
17-03-18 04:28:47.284 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:47.284 -07 000000591 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.3 V.
17-03-18 04:28:47.284 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30508 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30508 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30502 (-135.5 uncal um), Max = 30514 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:28:47.284 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30508, posNoise = 6, negNoise = 6
17-03-18 04:28:47.284 -07 000000591 INF: Z Motor: After move to -0.136297, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:47.284 -07 000000591 INF: Z Motor: Settle wait time = 1653 ms, measure time = 106 ms (allowed 150 ms), total time = 1759 ms
17-03-18 04:28:47.284 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:47.334 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-18 04:28:47.334 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:47.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:47.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:47.334 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:47.334 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:47.334 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:47.334 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:47.334 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:47.334 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:47.344 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:28:47.344 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:47.344 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:47.344 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:28:47.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:47.394 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:47.694 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:47.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:47.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:47.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:47.734 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:47.734 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:47.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:28:47.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:28:47.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:47.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:28:47.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:28:47.834 -07 000000438 INF: Autofocus start
17-03-18 04:28:47.834 -07 000000438 INF: MeasureProfile start
17-03-18 04:28:47.834 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:47.834 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:47.844 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:28:47.844 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:47.844 -07 000000438 INF: MeasureProfile done
17-03-18 04:28:47.844 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:28:47.844 -07 000000438 INF: Autofocus finished
17-03-18 04:28:48.044 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:48.044 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:48.044 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.136313216031978. ----------
17-03-18 04:28:48.044 -07 000000610 INF: Cycle	125	Tile	12	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:48.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28299, sync = True, waitForSettling = True)
17-03-18 04:28:48.054 -07 000000610 INF: Z Motor: Moving to -0.129545 mm, started at -0.136313 mm, distance = 6.77 um
17-03-18 04:28:48.054 -07 000000610 INF: FPGA: Xmit ZDACW 28299\n [Z Motor]
17-03-18 04:28:48.054 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:28:48.064 -07 000000610 INF: FPGA: 'ZDACW 28299' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:48.064 -07 000000487 INF: FPGA: Recv ZDACR 28299
17-03-18 04:28:48.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:48.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.224 -07 000000608 INF: FPGA: Recv ZSGSRD 29457
17-03-18 04:28:48.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:48.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.234 -07 000000487 INF: FPGA: Recv ZSGSRD 29457
17-03-18 04:28:48.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.244 -07 000000608 INF: FPGA: Recv ZSGSRD 29448
17-03-18 04:28:48.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29452
17-03-18 04:28:48.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.264 -07 000000608 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:28:48.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.274 -07 000000608 INF: FPGA: Recv ZSGSRD 29456
17-03-18 04:28:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.284 -07 000000608 INF: FPGA: Recv ZSGSRD 29458
17-03-18 04:28:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.294 -07 000000608 INF: FPGA: Recv ZSGSRD 29449
17-03-18 04:28:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.304 -07 000000608 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:28:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:48.314 -07 000000487 INF: FPGA: Recv ZSGSRD 29460
17-03-18 04:28:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:48.324 -07 000000487 INF: FPGA: Recv ZPIEZORD 24901
17-03-18 04:28:48.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:48.334 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -10.0 V.
17-03-18 04:28:48.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29455 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29456 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29448 (-128.7 uncal um), Max = 29460 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:28:48.334 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29455, posNoise = 5, negNoise = 7
17-03-18 04:28:48.334 -07 000000610 INF: Z Motor: After move to -0.129545, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:48.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:28:48.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:48.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:48.334 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:48.334 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:48.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:48.334 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:48.334 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:48.334 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:48.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:48.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:48.334 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:28:48.334 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:48.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:48.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:48.344 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:48.344 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:48.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:48.344 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:28:48.354 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:28:48.354 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:28:48.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28475 150\n [Camera]
17-03-18 04:28:48.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:48.974 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:48.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:48.974 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:48.974 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:48.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:48.974 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:48.984 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:48.984 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:28:48.984 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:48.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:49.164 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28475 806
17-03-18 04:28:49.314 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:49.374 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:28:49.374 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:28:49.374 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:49.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:49.384 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:28:49.384 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:28:49.384 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:28:49.384 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:49.384 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:49.394 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:28:49.524 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:49.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:49.524 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:49.524 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:49.524 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:49.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:49.524 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:28:49.524 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:49.524 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:49.524 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:28:49.714 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:49.714 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:49.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28475 150' command took 2 ms to send, 1356 ms to get response, and 1361 ms overall
17-03-18 04:28:49.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:49.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.129548520646704. ------
17-03-18 04:28:49.724 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:49.724 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13597 mm
17-03-18 04:28:49.724 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:49.724 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:49.724 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:28:49.724 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 04:28:49.724 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29702, sync = True, waitForSettling = False)
17-03-18 04:28:49.724 -07 000000455 INF: Z Motor: Moving to -0.135967 mm, started at -0.129549 mm, distance = -6.42 um
17-03-18 04:28:49.734 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:49.734 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:49.744 -07 000000455 INF: FPGA: Xmit ZDACW 29702\n [Z Motor]
17-03-18 04:28:49.754 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:49.934 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:28:49.934 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:28:49.934 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:49.934 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:28:49.934 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:28:49.934 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:49.934 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:49.934 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:28:49.934 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:28:49.944 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:28:49.954 -07 000000438 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:28:49.954 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:28:49.954 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:49.954 -07 000000455 INF: FPGA: 'ZDACW 29702' command took 0 ms to send, 205 ms to get response, and 230 ms overall
17-03-18 04:28:49.954 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 04:28:49.954 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:49.954 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 215 ms to get response, and 231 ms overall
17-03-18 04:28:49.954 -07 000000626 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:49.954 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:49.954 -07 000000626 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:28:49.954 -07 000000608 INF: FPGA: Recv ZDACR 29702
17-03-18 04:28:49.964 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:49.964 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:49.964 -07 000000455 INF: Z Motor: MoveAbsStepped took 235 ms (did NOT wait for settling yet))
17-03-18 04:28:50.334 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:28:50.334 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 04:28:50.384 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:50.384 -07 000000438 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:28:50.394 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:50.394 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:50.394 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:28:50.394 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.846 mm, average velocity = 2.220 mm/sec
17-03-18 04:28:50.834 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.993549,
17-03-18 04:28:51.344 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:51.344 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:28:51.354 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.354 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:51.384 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:51.384 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:51.384 -07 000000626 INF: Y Motor: Moved to 69.8628 after 1656 ms (table move)
17-03-18 04:28:51.384 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135967 mm (DAC = 29702)
17-03-18 04:28:51.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30466
17-03-18 04:28:51.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:28:51.394 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.394 -07 000000626 INF: FPGA: Recv ZSGSRD 30456
17-03-18 04:28:51.404 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.404 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.404 -07 000000455 INF: FPGA: Recv ZSGSRD 30458
17-03-18 04:28:51.414 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.414 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.414 -07 000000455 INF: FPGA: Recv ZSGSRD 30450
17-03-18 04:28:51.424 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.424 -07 000000455 INF: FPGA: Recv ZSGSRD 30459
17-03-18 04:28:51.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.434 -07 000000455 INF: FPGA: Recv ZSGSRD 30457
17-03-18 04:28:51.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.444 -07 000000608 INF: FPGA: Recv ZSGSRD 30445
17-03-18 04:28:51.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.454 -07 000000455 INF: FPGA: Recv ZSGSRD 30451
17-03-18 04:28:51.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.464 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.464 -07 000000608 INF: FPGA: Recv ZSGSRD 30454
17-03-18 04:28:51.474 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:51.474 -07 000000455 INF: FPGA: Recv ZSGSRD 30456
17-03-18 04:28:51.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.484 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:51.484 -07 000000438 INF: FPGA: Recv ZPIEZORD 26244
17-03-18 04:28:51.494 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:51.494 -07 000000591 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -9.3 V.
17-03-18 04:28:51.494 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30455 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30456 (-135.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30445 (-135.1 uncal um), Max = 30466 (-135.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:28:51.494 -07 000000591 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30455, posNoise = 11, negNoise = 10
17-03-18 04:28:51.494 -07 000000591 INF: Z Motor: After move to -0.135967, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:51.494 -07 000000591 INF: Z Motor: Settle wait time = 1660 ms, measure time = 106 ms (allowed 150 ms), total time = 1766 ms
17-03-18 04:28:51.494 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:51.544 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1818 ms
17-03-18 04:28:51.544 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:51.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:51.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:51.544 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:51.544 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:51.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:51.544 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:51.554 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:28:51.554 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:51.554 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:51.554 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:51.564 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:51.564 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:28:51.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:51.614 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 04:28:51.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:51.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:51.914 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 04:28:51.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 04:28:51.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:51.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:28:51.944 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:51.944 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:51.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:28:52.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:28:52.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:52.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:28:52.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:28:52.044 -07 000000502 INF: Autofocus start
17-03-18 04:28:52.044 -07 000000502 INF: MeasureProfile start
17-03-18 04:28:52.044 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:52.044 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:52.054 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:52.054 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:52.054 -07 000000502 INF: MeasureProfile done
17-03-18 04:28:52.054 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:28:52.054 -07 000000502 INF: Autofocus finished
17-03-18 04:28:52.254 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:52.254 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:52.264 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135972732788465. ----------
17-03-18 04:28:52.264 -07 000000610 INF: Cycle	125	Tile	13	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:52.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28226, sync = True, waitForSettling = True)
17-03-18 04:28:52.264 -07 000000610 INF: Z Motor: Moving to -0.129210 mm, started at -0.135973 mm, distance = 6.76 um
17-03-18 04:28:52.264 -07 000000610 INF: FPGA: Xmit ZDACW 28226\n [Z Motor]
17-03-18 04:28:52.274 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:28:52.274 -07 000000610 INF: FPGA: 'ZDACW 28226' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:28:52.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:52.274 -07 000000502 INF: FPGA: Recv ZDACR 28226
17-03-18 04:28:52.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:52.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.434 -07 000000455 INF: FPGA: Recv ZSGSRD 29407
17-03-18 04:28:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29406
17-03-18 04:28:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.454 -07 000000455 INF: FPGA: Recv ZSGSRD 29401
17-03-18 04:28:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.464 -07 000000012 INF: FPGA: Recv ZSGSRD 29402
17-03-18 04:28:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29398
17-03-18 04:28:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.484 -07 000000591 INF: FPGA: Recv ZSGSRD 29413
17-03-18 04:28:52.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.494 -07 000000012 INF: FPGA: Recv ZSGSRD 29407
17-03-18 04:28:52.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.504 -07 000000591 INF: FPGA: Recv ZSGSRD 29402
17-03-18 04:28:52.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.514 -07 000000012 INF: FPGA: Recv ZSGSRD 29398
17-03-18 04:28:52.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:52.524 -07 000000611 INF: FPGA: Recv ZSGSRD 29400
17-03-18 04:28:52.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:52.534 -07 000000438 INF: FPGA: Recv ZPIEZORD 24837
17-03-18 04:28:52.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:52.544 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.0 V.
17-03-18 04:28:52.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29403 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29402 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29398 (-128.4 uncal um), Max = 29413 (-128.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:52.544 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29403, posNoise = 10, negNoise = 5
17-03-18 04:28:52.544 -07 000000610 INF: Z Motor: After move to -0.129210, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:52.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 04:28:52.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:52.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:52.544 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:52.544 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:52.544 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:52.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:52.544 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:52.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:52.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:28:52.544 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:52.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:52.544 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:52.554 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:52.554 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:52.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:52.554 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:52.564 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:28:52.564 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:28:52.564 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:28:52.564 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:52.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28402 150\n [Camera]
17-03-18 04:28:52.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:53.184 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:53.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:53.184 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:53.184 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:53.184 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:28:53.184 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:53.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:53.184 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:53.184 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:53.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:28:53.374 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28402 806
17-03-18 04:28:53.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:53.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:28:53.564 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:28:53.564 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:53.574 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:28:53.574 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:28:53.574 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:53.574 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:53.574 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:53.574 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:28:53.584 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:28:53.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:53.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:53.724 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:53.724 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:53.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:28:53.734 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:53.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:53.734 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:53.734 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:53.734 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:28:53.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:28:53.924 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:53.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28402 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-18 04:28:53.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:53.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129214461615332. ------
17-03-18 04:28:53.924 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:53.924 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13561 mm
17-03-18 04:28:53.924 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:53.924 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:28:53.934 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:28:53.934 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:53.934 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:53.934 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:54.054 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29623, sync = True, waitForSettling = False)
17-03-18 04:28:54.054 -07 000000438 INF: Z Motor: Moving to -0.135605 mm, started at -0.129214 mm, distance = -6.39 um
17-03-18 04:28:54.054 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:28:54.054 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 121 ms overall
17-03-18 04:28:54.054 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:54.054 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:54.054 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:54.054 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:28:54.064 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:54.074 -07 000000438 INF: FPGA: Xmit ZDACW 29623\n [Z Motor]
17-03-18 04:28:54.074 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:28:54.084 -07 000000438 INF: FPGA: 'ZDACW 29623' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:54.084 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:54.084 -07 000000474 INF: FPGA: Recv ZDACR 29623
17-03-18 04:28:54.094 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:54.094 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:28:54.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:28:54.124 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:28:54.124 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:54.124 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:28:54.134 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:28:54.134 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:54.134 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:54.134 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:28:54.134 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:28:54.144 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:28:54.254 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:54.254 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:28:54.434 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:28:54.434 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 382 ms overall
17-03-18 04:28:54.484 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:54.484 -07 000000487 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:28:54.494 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:54.494 -07 000000502 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:54.494 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:28:54.494 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.840 mm, average velocity = 2.198 mm/sec
17-03-18 04:28:55.444 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:55.444 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:28:55.454 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.454 -07 000000502 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:55.484 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:55.484 -07 000000502 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:55.484 -07 000000502 INF: Y Motor: Moved to 70.6880 after 1552 ms (table move)
17-03-18 04:28:55.484 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135605 mm (DAC = 29623)
17-03-18 04:28:55.484 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.484 -07 000000438 INF: FPGA: Recv ZSGSRD 30395
17-03-18 04:28:55.494 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:28:55.494 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.494 -07 000000502 INF: FPGA: Recv ZSGSRD 30407
17-03-18 04:28:55.504 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.504 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.504 -07 000000444 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:28:55.514 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.514 -07 000000444 INF: FPGA: Recv ZSGSRD 30391
17-03-18 04:28:55.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.524 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.524 -07 000000444 INF: FPGA: Recv ZSGSRD 30396
17-03-18 04:28:55.534 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.534 -07 000000502 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:28:55.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.544 -07 000000502 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:28:55.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.554 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.554 -07 000000502 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:28:55.564 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.564 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.564 -07 000000502 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:28:55.574 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.574 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:55.574 -07 000000502 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:28:55.584 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.584 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:55.584 -07 000000502 INF: FPGA: Recv ZPIEZORD 26167
17-03-18 04:28:55.594 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:55.594 -07 000000424 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.520 V. Piezo Error = -9.3 V.
17-03-18 04:28:55.594 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30398 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30397 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30391 (-134.8 uncal um), Max = 30407 (-134.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:28:55.594 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30398, posNoise = 9, negNoise = 7
17-03-18 04:28:55.594 -07 000000424 INF: Z Motor: After move to -0.135605, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:55.594 -07 000000424 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-18 04:28:55.594 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:28:55.644 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-18 04:28:55.644 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:28:55.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:55.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:55.644 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:55.644 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:28:55.644 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:55.644 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:55.644 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:28:55.644 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:28:55.654 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:28:55.654 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:28:55.654 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:28:55.654 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:28:55.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:28:55.704 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:28:56.004 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:28:56.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:28:56.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:28:56.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:28:56.044 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:28:56.044 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:28:56.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:28:56.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:28:56.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:56.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:28:56.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:28:56.144 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:56.144 -07 000000502 INF: Autofocus start
17-03-18 04:28:56.144 -07 000000502 INF: MeasureProfile start
17-03-18 04:28:56.144 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:56.154 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:56.154 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:28:56.164 -07 000000502 INF: MeasureProfile done
17-03-18 04:28:56.164 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:28:56.164 -07 000000502 INF: Autofocus finished
17-03-18 04:28:56.194 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.989471,
17-03-18 04:28:56.354 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:28:56.354 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:28:56.354 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135606552696385. ----------
17-03-18 04:28:56.354 -07 000000610 INF: Cycle	125	Tile	14	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:28:56.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28118, sync = True, waitForSettling = True)
17-03-18 04:28:56.364 -07 000000610 INF: Z Motor: Moving to -0.128716 mm, started at -0.135607 mm, distance = 6.89 um
17-03-18 04:28:56.364 -07 000000610 INF: FPGA: Xmit ZDACW 28118\n [Z Motor]
17-03-18 04:28:56.364 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:28:56.374 -07 000000610 INF: FPGA: 'ZDACW 28118' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:28:56.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:56.374 -07 000000438 INF: FPGA: Recv ZDACR 28118
17-03-18 04:28:56.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:28:56.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.534 -07 000000424 INF: FPGA: Recv ZSGSRD 29325
17-03-18 04:28:56.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:28:56.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29330
17-03-18 04:28:56.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:28:56.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.564 -07 000000461 INF: FPGA: Recv ZSGSRD 29326
17-03-18 04:28:56.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.584 -07 000000424 INF: FPGA: Recv ZSGSRD 29326
17-03-18 04:28:56.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:28:56.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.594 -07 000000438 INF: FPGA: Recv ZSGSRD 29327
17-03-18 04:28:56.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.604 -07 000000424 INF: FPGA: Recv ZSGSRD 29325
17-03-18 04:28:56.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.614 -07 000000424 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:28:56.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:28:56.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29334
17-03-18 04:28:56.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:56.644 -07 000000444 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:28:56.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:56.654 -07 000000438 INF: FPGA: Recv ZPIEZORD 24786
17-03-18 04:28:56.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:56.664 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -10.0 V.
17-03-18 04:28:56.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29326 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29321 (-127.9 uncal um), Max = 29334 (-128.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:28:56.664 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29326, posNoise = 8, negNoise = 5
17-03-18 04:28:56.664 -07 000000610 INF: Z Motor: After move to -0.128716, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:56.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 04:28:56.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:28:56.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:28:56.664 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:28:56.664 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:28:56.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:28:56.664 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:28:56.664 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:28:56.664 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:28:56.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:28:56.664 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:28:56.664 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:28:56.664 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:28:56.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:28:56.674 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:28:56.674 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:28:56.674 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:28:56.674 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:28:56.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:28:56.684 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:28:56.684 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:28:56.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:28:56.684 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:28:56.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28295 150\n [Camera]
17-03-18 04:28:56.884 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:28:57.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:28:57.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:28:57.304 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:57.314 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:57.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:28:57.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:28:57.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:28:57.314 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:57.314 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:57.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:28:57.494 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28295 806
17-03-18 04:28:57.644 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:28:57.704 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:28:57.704 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:28:57.704 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:57.704 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:57.704 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:28:57.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:28:57.714 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:28:57.714 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:57.714 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:28:57.724 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:28:57.854 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:28:57.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:28:57.854 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:28:57.854 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:28:57.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:28:57.854 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:28:57.854 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:28:57.854 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:28:57.864 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:28:57.864 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:28:58.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:28:58.044 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:28:58.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28295 150' command took 2 ms to send, 1352 ms to get response, and 1358 ms overall
17-03-18 04:28:58.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:28:58.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128719797280417. ------
17-03-18 04:28:58.044 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:28:58.044 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13538 mm
17-03-18 04:28:58.044 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:28:58.164 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:28:58.164 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 04:28:58.164 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:28:58.174 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:28:58.174 -07 000000467 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:28:58.174 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29573, sync = True, waitForSettling = False)
17-03-18 04:28:58.174 -07 000000585 INF: Z Motor: Moving to -0.135377 mm, started at -0.128720 mm, distance = -6.66 um
17-03-18 04:28:58.184 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:58.184 -07 000000611 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:28:58.194 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:28:58.194 -07 000000467 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:58.194 -07 000000585 INF: FPGA: Xmit ZDACW 29573\n [Z Motor]
17-03-18 04:28:58.194 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:28:58.194 -07 000000467 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:28:58.194 -07 000000467 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:28:58.204 -07 000000585 INF: FPGA: 'ZDACW 29573' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:28:58.204 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:28:58.204 -07 000000438 INF: FPGA: Recv ZDACR 29573
17-03-18 04:28:58.214 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:28:58.214 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:58.214 -07 000000585 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:28:58.254 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:28:58.254 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:28:58.254 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:58.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:28:58.254 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:28:58.254 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:28:58.264 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:58.264 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:28:58.264 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:28:58.264 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:28:58.374 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:28:58.374 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:28:58.584 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:28:58.584 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:28:58.634 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:58.634 -07 000000447 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:28:58.644 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:58.644 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:58.644 -07 000000467 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:28:58.644 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-18 04:28:59.594 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:28:59.824 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:28:59.824 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 220 ms to get response, and 230 ms overall
17-03-18 04:28:59.824 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:28:59.854 -07 000000467 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:28:59.854 -07 000000467 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:28:59.854 -07 000000467 INF: Y Motor: Moved to 71.5186 after 1681 ms (table move)
17-03-18 04:28:59.854 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135377 mm (DAC = 29573)
17-03-18 04:28:59.854 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.854 -07 000000444 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:28:59.864 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:28:59.864 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.864 -07 000000012 INF: FPGA: Recv ZSGSRD 30354
17-03-18 04:28:59.874 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.874 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.874 -07 000000444 INF: FPGA: Recv ZSGSRD 30364
17-03-18 04:28:59.884 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.884 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.884 -07 000000608 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:28:59.894 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.894 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.894 -07 000000474 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:28:59.904 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.904 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.904 -07 000000561 INF: FPGA: Recv ZSGSRD 30369
17-03-18 04:28:59.914 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.914 -07 000000447 INF: FPGA: Recv ZSGSRD 30361
17-03-18 04:28:59.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30363
17-03-18 04:28:59.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.934 -07 000000467 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:28:59.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:28:59.944 -07 000000608 INF: FPGA: Recv ZSGSRD 30362
17-03-18 04:28:59.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.954 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:28:59.954 -07 000000462 INF: FPGA: Recv ZPIEZORD 26128
17-03-18 04:28:59.964 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:28:59.964 -07 000000461 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.3 V.
17-03-18 04:28:59.964 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30362 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30354 (-134.5 uncal um), Max = 30369 (-134.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:28:59.964 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30362, posNoise = 7, negNoise = 8
17-03-18 04:28:59.964 -07 000000461 INF: Z Motor: After move to -0.135377, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:28:59.964 -07 000000461 INF: Z Motor: Settle wait time = 1684 ms, measure time = 105 ms (allowed 150 ms), total time = 1789 ms
17-03-18 04:28:59.964 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:29:00.014 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1962 ms
17-03-18 04:29:00.014 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:29:00.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:00.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:00.014 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:29:00.014 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:00.024 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:00.024 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:00.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:00.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:29:00.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:29:00.024 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:29:00.034 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:29:00.034 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:29:00.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:29:00.084 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:29:00.384 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:29:00.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:29:00.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:29:00.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:29:00.424 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:29:00.424 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:29:00.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:29:00.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 04:29:00.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:00.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:29:00.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 04:29:00.524 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:00.524 -07 000000012 INF: Autofocus start
17-03-18 04:29:00.524 -07 000000012 INF: MeasureProfile start
17-03-18 04:29:00.524 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:00.534 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:00.534 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:29:00.534 -07 000000012 INF: MeasureProfile done
17-03-18 04:29:00.534 -07 000000012 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:29:00.534 -07 000000012 INF: Autofocus finished
17-03-18 04:29:00.734 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:29:00.734 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:29:00.744 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135375281059281. ----------
17-03-18 04:29:00.744 -07 000000610 INF: Cycle	125	Tile	15	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:29:00.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28114, sync = True, waitForSettling = True)
17-03-18 04:29:00.744 -07 000000610 INF: Z Motor: Moving to -0.128698 mm, started at -0.135375 mm, distance = 6.68 um
17-03-18 04:29:00.744 -07 000000610 INF: FPGA: Xmit ZDACW 28114\n [Z Motor]
17-03-18 04:29:00.744 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:29:00.754 -07 000000610 INF: FPGA: 'ZDACW 28114' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:29:00.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:00.754 -07 000000626 INF: FPGA: Recv ZDACR 28114
17-03-18 04:29:00.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:29:00.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.914 -07 000000561 INF: FPGA: Recv ZSGSRD 29325
17-03-18 04:29:00.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:00.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.924 -07 000000012 INF: FPGA: Recv ZSGSRD 29325
17-03-18 04:29:00.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.934 -07 000000438 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:29:00.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.944 -07 000000447 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:29:00.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.954 -07 000000561 INF: FPGA: Recv ZSGSRD 29327
17-03-18 04:29:00.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:29:00.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.974 -07 000000467 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:29:00.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.984 -07 000000424 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:29:00.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:00.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:00.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:29:01.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:01.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:01.004 -07 000000444 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:29:01.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:01.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:01.014 -07 000000012 INF: FPGA: Recv ZPIEZORD 24753
17-03-18 04:29:01.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:29:01.024 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -10.0 V.
17-03-18 04:29:01.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29324 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29324 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29321 (-127.9 uncal um), Max = 29327 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:29:01.024 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29324, posNoise = 3, negNoise = 3
17-03-18 04:29:01.024 -07 000000610 INF: Z Motor: After move to -0.128698, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:01.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 04:29:01.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:01.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:01.024 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:01.024 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:01.024 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:29:01.024 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:01.024 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:29:01.024 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:29:01.024 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:01.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:29:01.024 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:29:01.024 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:29:01.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:29:01.024 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:29:01.024 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:29:01.024 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:29:01.034 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:29:01.034 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:29:01.034 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:29:01.034 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:29:01.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28291 150\n [Camera]
17-03-18 04:29:01.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:29:01.564 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.007176,
17-03-18 04:29:01.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:29:01.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:29:01.664 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:01.664 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:29:01.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:29:01.664 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:01.664 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:01.664 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:29:01.664 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:01.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:29:01.674 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:01.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:29:01.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28291 806
17-03-18 04:29:02.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:29:02.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:29:02.064 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:29:02.064 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:02.064 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:29:02.064 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:29:02.064 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:02.064 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:02.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:29:02.064 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:02.074 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:29:02.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:29:02.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:29:02.204 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:02.204 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:02.204 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:29:02.214 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:29:02.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:29:02.214 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:02.214 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:02.214 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:29:02.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:29:02.394 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:29:02.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28291 150' command took 2 ms to send, 1348 ms to get response, and 1358 ms overall
17-03-18 04:29:02.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:29:02.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128706948856133. ------
17-03-18 04:29:02.404 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13504 mm
17-03-18 04:29:02.404 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:29:02.404 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:02.404 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:29:02.404 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29500, sync = True, waitForSettling = False)
17-03-18 04:29:02.404 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:29:02.404 -07 000000012 INF: Z Motor: Moving to -0.135042 mm, started at -0.128707 mm, distance = -6.34 um
17-03-18 04:29:02.414 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:02.414 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:02.414 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 04:29:02.414 -07 000000626 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:29:02.424 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:02.424 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:02.424 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:29:02.424 -07 000000561 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:29:02.424 -07 000000012 INF: FPGA: Xmit ZDACW 29500\n [Z Motor]
17-03-18 04:29:02.424 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:29:02.434 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:29:02.434 -07 000000012 INF: FPGA: 'ZDACW 29500' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:29:02.444 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:29:02.454 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:02.454 -07 000000438 INF: FPGA: Recv ZDACR 29500
17-03-18 04:29:02.464 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:29:02.464 -07 000000012 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:29:02.604 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:29:02.604 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:29:02.604 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:02.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:29:02.604 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:29:02.604 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:02.614 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:02.614 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:02.614 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:29:02.614 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:29:02.634 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:29:02.634 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:29:02.814 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 04:29:02.814 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:29:02.864 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:02.864 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:29:02.874 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:29:02.874 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:02.874 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:29:02.874 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:29:03.824 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:03.824 -07 000000608 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:29:03.834 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:03.834 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:03.864 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:29:03.864 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:29:03.864 -07 000000561 INF: Y Motor: Moved to 72.3491 after 1451 ms (table move)
17-03-18 04:29:03.864 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135042 mm (DAC = 29500)
17-03-18 04:29:03.864 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.864 -07 000000467 INF: FPGA: Recv ZSGSRD 30312
17-03-18 04:29:03.874 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:03.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.874 -07 000000608 INF: FPGA: Recv ZSGSRD 30316
17-03-18 04:29:03.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.884 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.884 -07 000000585 INF: FPGA: Recv ZSGSRD 30314
17-03-18 04:29:03.894 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.894 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.894 -07 000000608 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:29:03.904 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:29:03.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.914 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.914 -07 000000462 INF: FPGA: Recv ZSGSRD 30314
17-03-18 04:29:03.924 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30303
17-03-18 04:29:03.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.934 -07 000000461 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:29:03.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.944 -07 000000447 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:29:03.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:03.954 -07 000000474 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:29:03.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.964 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:03.964 -07 000000502 INF: FPGA: Recv ZPIEZORD 26052
17-03-18 04:29:03.974 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:03.974 -07 000000444 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.4 V.
17-03-18 04:29:03.974 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30312 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30313 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30303 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:29:03.974 -07 000000444 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30312, posNoise = 4, negNoise = 9
17-03-18 04:29:03.974 -07 000000444 INF: Z Motor: After move to -0.135042, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:03.974 -07 000000444 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:29:03.974 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:29:04.024 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:29:04.024 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:29:04.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:04.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:04.024 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:04.024 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:04.024 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:29:04.024 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:04.024 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:04.024 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:29:04.034 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:29:04.034 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:29:04.044 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:29:04.044 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:29:04.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:29:04.094 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:29:04.394 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:29:04.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:29:04.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:29:04.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:29:04.434 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:29:04.434 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:29:04.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 04:29:04.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:29:04.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:04.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:29:04.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:29:04.534 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:04.534 -07 000000467 INF: Autofocus start
17-03-18 04:29:04.534 -07 000000467 INF: MeasureProfile start
17-03-18 04:29:04.534 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:04.544 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:04.544 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:29:04.544 -07 000000467 INF: MeasureProfile done
17-03-18 04:29:04.544 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:29:04.544 -07 000000467 INF: Autofocus finished
17-03-18 04:29:04.744 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:29:04.744 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:29:04.744 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135054070452193. ----------
17-03-18 04:29:04.744 -07 000000610 INF: Cycle	125	Tile	16	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:29:04.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28024, sync = True, waitForSettling = True)
17-03-18 04:29:04.754 -07 000000610 INF: Z Motor: Moving to -0.128286 mm, started at -0.135054 mm, distance = 6.77 um
17-03-18 04:29:04.754 -07 000000610 INF: FPGA: Xmit ZDACW 28024\n [Z Motor]
17-03-18 04:29:04.754 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:29:04.764 -07 000000610 INF: FPGA: 'ZDACW 28024' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:04.764 -07 000000424 INF: FPGA: Recv ZDACR 28024
17-03-18 04:29:04.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:29:04.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.924 -07 000000447 INF: FPGA: Recv ZSGSRD 29263
17-03-18 04:29:04.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:04.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.934 -07 000000444 INF: FPGA: Recv ZSGSRD 29260
17-03-18 04:29:04.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.944 -07 000000467 INF: FPGA: Recv ZSGSRD 29259
17-03-18 04:29:04.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.954 -07 000000561 INF: FPGA: Recv ZSGSRD 29256
17-03-18 04:29:04.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.964 -07 000000585 INF: FPGA: Recv ZSGSRD 29261
17-03-18 04:29:04.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29255
17-03-18 04:29:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.984 -07 000000608 INF: FPGA: Recv ZSGSRD 29256
17-03-18 04:29:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:04.994 -07 000000438 INF: FPGA: Recv ZSGSRD 29259
17-03-18 04:29:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:05.004 -07 000000626 INF: FPGA: Recv ZSGSRD 29262
17-03-18 04:29:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:05.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:05.014 -07 000000462 INF: FPGA: Recv ZSGSRD 29265
17-03-18 04:29:05.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:05.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:05.024 -07 000000608 INF: FPGA: Recv ZPIEZORD 24710
17-03-18 04:29:05.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:05.034 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -10.0 V.
17-03-18 04:29:05.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29255 (-127.5 uncal um), Max = 29265 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:29:05.034 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 5, negNoise = 5
17-03-18 04:29:05.034 -07 000000610 INF: Z Motor: After move to -0.128286, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:05.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:29:05.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:05.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:05.034 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:05.034 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:05.034 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:29:05.034 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:05.034 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:29:05.034 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:29:05.034 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:05.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:29:05.034 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:29:05.034 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:29:05.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:29:05.034 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:29:05.034 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:29:05.034 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:29:05.044 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:29:05.044 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:29:05.044 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:29:05.044 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:29:05.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28201 150\n [Camera]
17-03-18 04:29:05.254 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:29:05.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:29:05.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:29:05.674 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:05.674 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:05.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:29:05.674 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:29:05.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:29:05.674 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:05.674 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:05.674 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:29:05.864 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28201 806
17-03-18 04:29:06.024 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 959
17-03-18 04:29:06.054 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:29:06.054 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:29:06.054 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:06.054 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:29:06.054 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:29:06.054 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:06.064 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:06.064 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:06.064 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:29:06.074 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:29:06.224 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1159
17-03-18 04:29:06.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1159
17-03-18 04:29:06.224 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:06.224 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:06.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:29:06.224 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1159
17-03-18 04:29:06.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1159
17-03-18 04:29:06.224 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:06.224 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:06.224 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:29:06.414 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:29:06.414 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:29:06.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28201 150' command took 2 ms to send, 1354 ms to get response, and 1360 ms overall
17-03-18 04:29:06.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:29:06.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128295799279061. ------
17-03-18 04:29:06.534 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:06.534 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13481 mm
17-03-18 04:29:06.534 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:29:06.544 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:06.544 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:29:06.544 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29450, sync = True, waitForSettling = False)
17-03-18 04:29:06.544 -07 000000012 INF: Z Motor: Moving to -0.134813 mm, started at -0.128296 mm, distance = -6.52 um
17-03-18 04:29:06.544 -07 000000012 INF: FPGA: Xmit ZDACW 29450\n [Z Motor]
17-03-18 04:29:06.544 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:29:06.544 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:29:06.544 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:29:06.554 -07 000000012 INF: FPGA: 'ZDACW 29450' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:29:06.554 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:06.554 -07 000000424 INF: FPGA: Recv ZDACR 29450
17-03-18 04:29:06.564 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:29:06.564 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:06.564 -07 000000012 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 04:29:06.574 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:06.574 -07 000000012 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:29:06.584 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 04:29:06.584 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:06.584 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:29:06.584 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:29:06.584 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:29:06.624 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:29:06.624 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:29:06.624 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:06.624 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:29:06.624 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:29:06.624 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:06.624 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:06.634 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:29:06.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:29:06.634 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:29:06.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:06.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:29:06.764 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:29:06.764 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:29:06.934 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 4.016692,
17-03-18 04:29:06.954 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:29:06.954 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 04:29:07.004 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:07.014 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:29:07.014 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 04:29:07.014 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:07.014 -07 000000561 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:29:07.014 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.231 mm/sec
17-03-18 04:29:07.964 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:07.964 -07 000000462 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:29:07.974 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:07.974 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:08.004 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:29:08.004 -07 000000561 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:29:08.004 -07 000000561 INF: Y Motor: Moved to 73.1758 after 1457 ms (table move)
17-03-18 04:29:08.004 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134813 mm (DAC = 29450)
17-03-18 04:29:08.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.004 -07 000000444 INF: FPGA: Recv ZSGSRD 30280
17-03-18 04:29:08.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:08.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.014 -07 000000502 INF: FPGA: Recv ZSGSRD 30269
17-03-18 04:29:08.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.024 -07 000000626 INF: FPGA: Recv ZSGSRD 30275
17-03-18 04:29:08.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.034 -07 000000561 INF: FPGA: Recv ZSGSRD 30276
17-03-18 04:29:08.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.044 -07 000000626 INF: FPGA: Recv ZSGSRD 30280
17-03-18 04:29:08.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.054 -07 000000438 INF: FPGA: Recv ZSGSRD 30272
17-03-18 04:29:08.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30276
17-03-18 04:29:08.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:29:08.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.074 -07 000000585 INF: FPGA: Recv ZSGSRD 30270
17-03-18 04:29:08.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.084 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.084 -07 000000462 INF: FPGA: Recv ZSGSRD 30275
17-03-18 04:29:08.094 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.094 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:08.094 -07 000000626 INF: FPGA: Recv ZSGSRD 30280
17-03-18 04:29:08.104 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.104 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:08.104 -07 000000438 INF: FPGA: Recv ZPIEZORD 26003
17-03-18 04:29:08.114 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.114 -07 000000474 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -9.4 V.
17-03-18 04:29:08.114 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30275 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30276 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30269 (-134.0 uncal um), Max = 30280 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:29:08.114 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30275, posNoise = 5, negNoise = 6
17-03-18 04:29:08.114 -07 000000474 INF: Z Motor: After move to -0.134813, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:08.114 -07 000000474 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:29:08.114 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:29:08.164 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:29:08.164 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:29:08.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:08.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:08.164 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:08.164 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:08.164 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:29:08.164 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:08.164 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:08.164 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:29:08.174 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:29:08.174 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:29:08.184 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:29:08.184 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:29:08.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:29:08.234 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:29:08.534 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:29:08.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:29:08.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:29:08.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:29:08.574 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:29:08.574 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 04:29:08.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:29:08.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:29:08.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:08.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:29:08.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:29:08.674 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:08.674 -07 000000474 INF: Autofocus start
17-03-18 04:29:08.674 -07 000000474 INF: MeasureProfile start
17-03-18 04:29:08.674 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:08.684 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:08.684 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:29:08.684 -07 000000474 INF: MeasureProfile done
17-03-18 04:29:08.684 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:29:08.684 -07 000000474 INF: Autofocus finished
17-03-18 04:29:08.884 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:29:08.884 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:29:08.894 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134816374602948. ----------
17-03-18 04:29:08.894 -07 000000610 INF: Cycle	125	Tile	17	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:29:08.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27957, sync = True, waitForSettling = True)
17-03-18 04:29:08.894 -07 000000610 INF: Z Motor: Moving to -0.127979 mm, started at -0.134816 mm, distance = 6.84 um
17-03-18 04:29:08.894 -07 000000610 INF: FPGA: Xmit ZDACW 27957\n [Z Motor]
17-03-18 04:29:08.904 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:29:08.904 -07 000000610 INF: FPGA: 'ZDACW 27957' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:29:08.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:08.904 -07 000000444 INF: FPGA: Recv ZDACR 27957
17-03-18 04:29:08.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:08.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:29:09.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.064 -07 000000444 INF: FPGA: Recv ZSGSRD 29215
17-03-18 04:29:09.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.074 -07 000000561 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:29:09.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.084 -07 000000462 INF: FPGA: Recv ZSGSRD 29205
17-03-18 04:29:09.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29212
17-03-18 04:29:09.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.104 -07 000000502 INF: FPGA: Recv ZSGSRD 29208
17-03-18 04:29:09.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.114 -07 000000626 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:29:09.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.124 -07 000000462 INF: FPGA: Recv ZSGSRD 29218
17-03-18 04:29:09.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.134 -07 000000502 INF: FPGA: Recv ZSGSRD 29210
17-03-18 04:29:09.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.144 -07 000000438 INF: FPGA: Recv ZSGSRD 29208
17-03-18 04:29:09.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:09.154 -07 000000502 INF: FPGA: Recv ZSGSRD 29209
17-03-18 04:29:09.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:09.164 -07 000000474 INF: FPGA: Recv ZPIEZORD 24621
17-03-18 04:29:09.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:09.174 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -10.1 V.
17-03-18 04:29:09.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29211 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29210 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29205 (-127.2 uncal um), Max = 29218 (-127.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:29:09.174 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29211, posNoise = 7, negNoise = 6
17-03-18 04:29:09.174 -07 000000610 INF: Z Motor: After move to -0.127979, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:09.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:29:09.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:09.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:09.174 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:09.174 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:09.174 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:29:09.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:09.174 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:29:09.174 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:29:09.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:09.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:29:09.174 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:29:09.174 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:29:09.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:29:09.174 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:29:09.184 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:29:09.184 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:29:09.184 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:29:09.184 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:29:09.194 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:29:09.194 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:29:09.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28134 150\n [Camera]
17-03-18 04:29:09.394 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:29:09.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:29:09.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:29:09.814 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:09.824 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:09.824 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:29:09.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:29:09.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:29:09.824 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:09.834 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:09.834 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:29:10.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28134 806
17-03-18 04:29:10.154 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:29:10.194 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:29:10.194 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:29:10.194 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:10.204 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:10.204 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:29:10.204 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:29:10.204 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:29:10.204 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:10.204 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:10.214 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:29:10.354 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:29:10.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:29:10.364 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:10.364 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:29:10.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:29:10.364 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:10.364 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:10.364 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:29:10.364 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:10.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:29:10.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:29:10.554 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:29:10.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28134 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-18 04:29:10.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:29:10.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.127981012884114. ------
17-03-18 04:29:10.554 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:10.554 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13386 mm
17-03-18 04:29:10.554 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:29:10.554 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:29:10.554 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:29:10.554 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29241, sync = True, waitForSettling = False)
17-03-18 04:29:10.554 -07 000000502 INF: Z Motor: Moving to -0.133857 mm, started at -0.127981 mm, distance = -5.88 um
17-03-18 04:29:10.554 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:10.564 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:29:10.564 -07 000000502 INF: FPGA: Xmit ZDACW 29241\n [Z Motor]
17-03-18 04:29:10.564 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:29:10.574 -07 000000502 INF: FPGA: 'ZDACW 29241' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:10.574 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:10.574 -07 000000585 INF: FPGA: Recv ZDACR 29241
17-03-18 04:29:10.584 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:10.584 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:10.584 -07 000000502 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 04:29:10.704 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:29:10.704 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:29:10.704 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-18 04:29:10.704 -07 000000461 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:10.704 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:29:10.704 -07 000000461 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:29:10.714 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:29:10.764 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:29:10.764 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:29:10.764 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:10.764 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:29:10.764 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:29:10.774 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:10.774 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:10.774 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:29:10.774 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:10.784 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:29:10.904 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:29:10.904 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 345 ms overall
17-03-18 04:29:11.084 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 04:29:11.084 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-18 04:29:11.124 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:11.134 -07 000000591 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:29:11.134 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:29:11.134 -07 000000461 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:11.134 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:29:11.134 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.200 mm/sec
17-03-18 04:29:11.674 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:29:12.084 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:12.084 -07 000000438 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:29:12.094 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:12.094 -07 000000461 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:12.114 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:29:12.114 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:29:12.114 -07 000000461 INF: Y Motor: Moved to 74.0078 after 1555 ms (table move)
17-03-18 04:29:12.114 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133857 mm (DAC = 29241)
17-03-18 04:29:12.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.124 -07 000000474 INF: FPGA: Recv ZSGSRD 30129
17-03-18 04:29:12.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:29:12.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.124 -07 000000455 INF: FPGA: Recv ZSGSRD 30122
17-03-18 04:29:12.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:29:12.134 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.134 -07 000000462 INF: FPGA: Recv ZSGSRD 30129
17-03-18 04:29:12.144 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.144 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.144 -07 000000585 INF: FPGA: Recv ZSGSRD 30131
17-03-18 04:29:12.154 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.154 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.154 -07 000000561 INF: FPGA: Recv ZSGSRD 30132
17-03-18 04:29:12.164 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.164 -07 000000438 INF: FPGA: Recv ZSGSRD 30131
17-03-18 04:29:12.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.174 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.174 -07 000000487 INF: FPGA: Recv ZSGSRD 30119
17-03-18 04:29:12.184 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.184 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.184 -07 000000461 INF: FPGA: Recv ZSGSRD 30123
17-03-18 04:29:12.194 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.194 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.194 -07 000000502 INF: FPGA: Recv ZSGSRD 30128
17-03-18 04:29:12.204 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:12.204 -07 000000502 INF: FPGA: Recv ZSGSRD 30126
17-03-18 04:29:12.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.214 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:12.214 -07 000000461 INF: FPGA: Recv ZPIEZORD 25884
17-03-18 04:29:12.224 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:12.224 -07 000000626 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.462 V. Piezo Error = -9.3 V.
17-03-18 04:29:12.224 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30127 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30128 (-133.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30119 (-133.0 uncal um), Max = 30132 (-133.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:29:12.224 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30127, posNoise = 5, negNoise = 8
17-03-18 04:29:12.224 -07 000000626 INF: Z Motor: After move to -0.133857, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:12.224 -07 000000626 INF: Z Motor: Settle wait time = 1558 ms, measure time = 103 ms (allowed 150 ms), total time = 1661 ms
17-03-18 04:29:12.224 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:29:12.274 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-18 04:29:12.274 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:29:12.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:12.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:12.274 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:12.274 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:12.274 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:29:12.274 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:12.274 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:12.274 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:29:12.284 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:29:12.284 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:29:12.284 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:29:12.284 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:29:12.304 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.997626,
17-03-18 04:29:12.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:29:12.354 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:29:12.654 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:29:12.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:29:12.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:29:12.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:29:12.694 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:29:12.694 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:29:12.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 404 ms overall
17-03-18 04:29:12.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:29:12.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:12.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:29:12.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:29:12.794 -07 000000591 INF: Autofocus start
17-03-18 04:29:12.794 -07 000000591 INF: MeasureProfile start
17-03-18 04:29:12.794 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:12.804 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:12.804 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:12.804 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:29:12.804 -07 000000591 INF: MeasureProfile done
17-03-18 04:29:12.804 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:29:12.804 -07 000000591 INF: Autofocus finished
17-03-18 04:29:13.004 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:29:13.004 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:29:13.004 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133865591205967. ----------
17-03-18 04:29:13.004 -07 000000610 INF: Cycle	125	Tile	18	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:29:13.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27736, sync = True, waitForSettling = True)
17-03-18 04:29:13.014 -07 000000610 INF: Z Motor: Moving to -0.126967 mm, started at -0.133866 mm, distance = 6.90 um
17-03-18 04:29:13.014 -07 000000610 INF: FPGA: Xmit ZDACW 27736\n [Z Motor]
17-03-18 04:29:13.014 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:29:13.024 -07 000000610 INF: FPGA: 'ZDACW 27736' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:29:13.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:13.024 -07 000000444 INF: FPGA: Recv ZDACR 27736
17-03-18 04:29:13.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:29:13.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.184 -07 000000438 INF: FPGA: Recv ZSGSRD 29056
17-03-18 04:29:13.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.194 -07 000000591 INF: FPGA: Recv ZSGSRD 29052
17-03-18 04:29:13.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.204 -07 000000501 INF: FPGA: Recv ZSGSRD 29053
17-03-18 04:29:13.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29053
17-03-18 04:29:13.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.224 -07 000000611 INF: FPGA: Recv ZSGSRD 29056
17-03-18 04:29:13.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29051
17-03-18 04:29:13.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.244 -07 000000438 INF: FPGA: Recv ZSGSRD 29051
17-03-18 04:29:13.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.254 -07 000000501 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:29:13.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.264 -07 000000591 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:29:13.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:13.274 -07 000000611 INF: FPGA: Recv ZSGSRD 29051
17-03-18 04:29:13.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:13.284 -07 000000501 INF: FPGA: Recv ZPIEZORD 24453
17-03-18 04:29:13.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:13.294 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.232 V. Piezo Error = -10.1 V.
17-03-18 04:29:13.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29053 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29053 (-126.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29051 (-126.2 uncal um), Max = 29056 (-126.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:29:13.294 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29053, posNoise = 3, negNoise = 2
17-03-18 04:29:13.294 -07 000000610 INF: Z Motor: After move to -0.126967, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:13.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:29:13.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:13.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:13.294 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:13.294 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:13.294 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:29:13.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:13.294 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:29:13.294 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:29:13.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:13.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:29:13.294 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:29:13.294 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:29:13.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:29:13.304 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:29:13.304 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:29:13.304 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:29:13.304 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:29:13.304 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:29:13.314 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:29:13.314 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:29:13.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 27913 150\n [Camera]
17-03-18 04:29:13.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:29:13.934 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:29:13.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:29:13.934 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:13.944 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:29:13.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:29:13.944 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:13.944 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:13.944 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 04:29:13.944 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:13.944 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:29:14.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27913 806
17-03-18 04:29:14.274 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:29:14.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:29:14.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:29:14.334 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:14.334 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:29:14.334 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:29:14.334 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:14.334 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:14.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:29:14.334 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:14.344 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:29:14.484 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:29:14.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:29:14.484 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:14.484 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:29:14.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:29:14.484 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:14.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 04:29:14.484 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:14.484 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:14.484 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:29:14.674 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-18 04:29:14.674 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:29:14.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 27913 150' command took 2 ms to send, 1354 ms to get response, and 1360 ms overall
17-03-18 04:29:14.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:29:14.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126965987365716. ------
17-03-18 04:29:14.674 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:14.674 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13332 mm
17-03-18 04:29:14.674 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:29:14.684 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:14.684 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:29:14.684 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29123, sync = True, waitForSettling = False)
17-03-18 04:29:14.684 -07 000000012 INF: Z Motor: Moving to -0.133317 mm, started at -0.126966 mm, distance = -6.35 um
17-03-18 04:29:14.684 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:29:14.684 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:29:14.684 -07 000000447 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:29:14.694 -07 000000012 INF: FPGA: Xmit ZDACW 29123\n [Z Motor]
17-03-18 04:29:14.694 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:29:14.704 -07 000000012 INF: FPGA: 'ZDACW 29123' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:29:14.704 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:14.704 -07 000000608 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:29:14.714 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:29:14.714 -07 000000447 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:14.714 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:14.714 -07 000000447 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:29:14.714 -07 000000447 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:29:14.714 -07 000000608 INF: FPGA: Recv ZDACR 29123
17-03-18 04:29:14.724 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:29:14.724 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:29:14.724 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:29:14.884 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:29:14.884 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:29:14.894 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:29:14.894 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:29:14.894 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:14.894 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:29:14.894 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:29:14.894 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:14.894 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:14.894 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:29:14.894 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:29:14.904 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:29:15.094 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:29:15.094 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:29:15.124 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:15.134 -07 000000467 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:29:15.134 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:29:15.134 -07 000000447 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:15.134 -07 000000447 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:29:15.134 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 04:29:16.084 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:16.084 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:29:16.094 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:16.094 -07 000000447 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:16.104 -07 000000447 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:29:16.104 -07 000000447 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:29:16.104 -07 000000447 INF: Y Motor: Moved to 74.8315 after 1426 ms (table move)
17-03-18 04:29:16.114 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133317 mm (DAC = 29123)
17-03-18 04:29:16.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.114 -07 000000012 INF: FPGA: Recv ZSGSRD 30043
17-03-18 04:29:16.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:29:16.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.124 -07 000000585 INF: FPGA: Recv ZSGSRD 30035
17-03-18 04:29:16.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.134 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.134 -07 000000585 INF: FPGA: Recv ZSGSRD 30036
17-03-18 04:29:16.144 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.144 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.144 -07 000000585 INF: FPGA: Recv ZSGSRD 30040
17-03-18 04:29:16.154 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.154 -07 000000585 INF: FPGA: Recv ZSGSRD 30039
17-03-18 04:29:16.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.164 -07 000000585 INF: FPGA: Recv ZSGSRD 30052
17-03-18 04:29:16.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.174 -07 000000447 INF: FPGA: Recv ZSGSRD 30045
17-03-18 04:29:16.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.184 -07 000000611 INF: FPGA: Recv ZSGSRD 30049
17-03-18 04:29:16.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.194 -07 000000611 INF: FPGA: Recv ZSGSRD 30039
17-03-18 04:29:16.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:16.204 -07 000000611 INF: FPGA: Recv ZSGSRD 30037
17-03-18 04:29:16.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.214 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:16.214 -07 000000611 INF: FPGA: Recv ZPIEZORD 25772
17-03-18 04:29:16.224 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:16.224 -07 000000501 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.4 V.
17-03-18 04:29:16.224 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30042 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30035 (-132.5 uncal um), Max = 30052 (-132.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:29:16.224 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30042, posNoise = 10, negNoise = 7
17-03-18 04:29:16.224 -07 000000501 INF: Z Motor: After move to -0.133317, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:16.224 -07 000000501 INF: Z Motor: Settle wait time = 1430 ms, measure time = 109 ms (allowed 150 ms), total time = 1539 ms
17-03-18 04:29:16.224 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:29:16.274 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-18 04:29:16.274 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:29:16.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:16.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:16.274 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:16.274 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:16.274 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:29:16.274 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:16.274 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:16.274 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:29:16.284 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:29:16.284 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:29:16.294 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:29:16.294 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:29:16.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:29:16.344 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:29:16.644 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:29:16.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:29:16.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:29:16.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 04:29:16.674 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:16.684 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:29:16.684 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:29:16.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:29:16.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:29:16.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:16.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:29:16.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:29:16.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 124. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:29:16.784 -07 000000561 INF: Autofocus start
17-03-18 04:29:16.784 -07 000000561 INF: MeasureProfile start
17-03-18 04:29:16.784 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:29:16.784 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:29:16.794 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:29:16.794 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:29:16.794 -07 000000561 INF: MeasureProfile done
17-03-18 04:29:16.794 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:29:16.794 -07 000000561 INF: Autofocus finished
17-03-18 04:29:16.994 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:29:16.994 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:29:16.994 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133319533173918. ----------
17-03-18 04:29:16.994 -07 000000610 INF: Cycle	125	Tile	19	Exposure Settings		A	421	G	202	T	202	C	421
17-03-18 04:29:17.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27647, sync = True, waitForSettling = True)
17-03-18 04:29:17.004 -07 000000610 INF: Z Motor: Moving to -0.126560 mm, started at -0.133320 mm, distance = 6.76 um
17-03-18 04:29:17.004 -07 000000610 INF: FPGA: Xmit ZDACW 27647\n [Z Motor]
17-03-18 04:29:17.004 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:29:17.014 -07 000000610 INF: FPGA: 'ZDACW 27647' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:29:17.014 -07 000000585 INF: FPGA: Recv ZDACR 27647
17-03-18 04:29:17.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:29:17.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.174 -07 000000447 INF: FPGA: Recv ZSGSRD 28991
17-03-18 04:29:17.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:17.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.184 -07 000000608 INF: FPGA: Recv ZSGSRD 28985
17-03-18 04:29:17.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.194 -07 000000438 INF: FPGA: Recv ZSGSRD 28994
17-03-18 04:29:17.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.204 -07 000000438 INF: FPGA: Recv ZSGSRD 28990
17-03-18 04:29:17.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.214 -07 000000438 INF: FPGA: Recv ZSGSRD 28987
17-03-18 04:29:17.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.224 -07 000000438 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:29:17.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.234 -07 000000438 INF: FPGA: Recv ZSGSRD 28982
17-03-18 04:29:17.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.244 -07 000000438 INF: FPGA: Recv ZSGSRD 28994
17-03-18 04:29:17.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.254 -07 000000438 INF: FPGA: Recv ZSGSRD 28985
17-03-18 04:29:17.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:29:17.264 -07 000000438 INF: FPGA: Recv ZSGSRD 28991
17-03-18 04:29:17.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:29:17.274 -07 000000438 INF: FPGA: Recv ZPIEZORD 24447
17-03-18 04:29:17.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:29:17.284 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.219 V. Piezo Error = -10.0 V.
17-03-18 04:29:17.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28989 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28990 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 28982 (-125.7 uncal um), Max = 28994 (-125.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:29:17.284 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28989, posNoise = 5, negNoise = 7
17-03-18 04:29:17.284 -07 000000610 INF: Z Motor: After move to -0.126560, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:29:17.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:29:17.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:29:17.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:29:17.284 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:29:17.284 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:29:17.284 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:29:17.284 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:29:17.284 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:29:17.284 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:29:17.294 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:29:17.294 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:29:17.294 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:29:17.294 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:29:17.304 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:29:17.304 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:29:17.304 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:29:17.304 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:29:17.304 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:29:17.304 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:29:17.314 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:29:17.314 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:29:17.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 27824 150\n [Camera]
17-03-18 04:29:17.514 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:29:17.684 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.986717,
17-03-18 04:29:17.934 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-18 04:29:17.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-18 04:29:17.934 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:17.944 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:17.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:29:17.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-18 04:29:17.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-18 04:29:17.944 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:17.944 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:17.944 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 04:29:18.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27824 806
17-03-18 04:29:18.284 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-18 04:29:18.324 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:29:18.324 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:29:18.324 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:18.324 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:29:18.324 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:29:18.324 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:18.324 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:29:18.324 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:29:18.324 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:29:18.334 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:29:18.484 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-18 04:29:18.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-18 04:29:18.484 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:29:18.484 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:29:18.484 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-18 04:29:18.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-18 04:29:18.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-18 04:29:18.484 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:29:18.484 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:29:18.484 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:29:18.674 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-18 04:29:18.674 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:29:18.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 27824 150' command took 2 ms to send, 1345 ms to get response, and 1358 ms overall
17-03-18 04:29:18.884 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:29:18.884 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:29:18.884 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:18.894 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:29:18.894 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:29:18.894 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:29:18.894 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:29:18.894 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:29:18.894 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:29:18.894 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:29:18.904 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:29:18.944 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:29:18.944 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:29:18.984 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:29:19.114 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 04:29:19.114 -07 000000610 INF: Imaging Cycle 125: ScanTilesCommand Cycle 125 time end. Duration was 166974 ms.
17-03-18 04:29:19.114 -07 000000610 INF: =================== Cycle #125 ===================
17-03-18 04:29:19.114 -07 000000610 INF: ===================  ===================
17-03-18 04:29:19.114 -07 000000487 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:29:19.124 -07 000000461 INF: FPGA: Recv EXLED1ADCR 27
17-03-18 04:29:19.124 -07 000000487 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 5 ms to get response, and 7 ms overall
17-03-18 04:29:19.124 -07 000000487 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-18 04:29:19.124 -07 000000487 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 125, FrontChillerTemperature: 3.986717, FrontChillerHeatSinkTemperature: 0.418176, AmbientTemperature: 18.5769, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.26411, GreenLEDSensorTemperature: 27.12842, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-18 04:29:19.234 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.