17-03-18 04:29:19.284 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:29:19.284 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:29:19.284 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 04:29:19.284 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:19.294 -07 000000462 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:29:19.294 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:29:19.294 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:19.294 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:29:19.294 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:29:19.294 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:29:19.404 -07 000000462 INF: FPGA: Recv YMVTO 154378 878
17-03-18 04:29:19.404 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 117 ms overall
17-03-18 04:29:19.404 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 04:29:19.404 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 878 steps (0.549 mm). Slippage = 0.000 mm (0.00%).
17-03-18 04:29:19.404 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.549 mm, average velocity = 4.693 mm/sec
17-03-18 04:29:21.674 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:21.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1760, R2=1829, Total=3589. Warn if over 250 bubbles per interval.
17-03-18 04:29:22.404 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:29:22.404 -07 000000462 INF: FPGA: Recv YRDPOS 154387
17-03-18 04:29:22.414 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:29:22.414 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:29:22.434 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:29:22.434 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 04:29:22.434 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3143 ms
17-03-18 04:29:22.434 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 60° ===================
17-03-18 04:29:22.434 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:29:22.434 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:29:22.444 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:29:22.444 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:29:22.444 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:29:22.444 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-18 04:29:22.454 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:29:22.454 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 60° ===================
17-03-18 04:29:22.454 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:29:22.454 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:29:22.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:22.484 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:29:22.484 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:29:22.484 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:29:22.784 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:29:23.624 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.001704,
17-03-18 04:29:23.644 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:29:23.644 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:29:23.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:23.714 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:29:23.714 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:29:23.814 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:29:23.814 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:29:23.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:23.844 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:29:23.844 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:29:23.844 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:29:23.974 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:29:24.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:26.674 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-18 04:29:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1764, R2=1833, Total=3597. Warn if over 250 bubbles per interval.
17-03-18 04:29:27.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:27.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:27.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:27.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:28.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:28.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:28.074 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:29:28.074 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:29:28.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:28.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:29:28.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:29:28.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:28.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:29:28.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:29:28.394 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:29:28.524 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:29:28.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:28.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:28.984 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.020806,
17-03-18 04:29:29.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:29.014 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:29:29.014 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:29:30.234 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:29:30.234 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:29:30.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:30.254 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:29:30.254 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:29:30.254 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:29:30.394 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:29:30.414 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:29:30.414 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:29:30.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:30.484 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:29:30.484 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:29:30.584 -07 000000610 INF: =================== Cycle #126, Pumping Reagent CMS (4) ===================
17-03-18 04:29:30.584 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:29:30.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:30.614 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:29:30.614 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:29:30.614 -07 000000610 INF: =================== Cycle #126, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:29:30.744 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:29:30.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:31.674 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 04:29:31.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1767, R2=1836, Total=3603. Warn if over 250 bubbles per interval.
17-03-18 04:29:32.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:32.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:32.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:32.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:32.704 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:29:32.704 -07 000000610 INF: =================== Cycle #126, Pumping Reagent CMS (4) ===================
17-03-18 04:29:32.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:32.864 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:29:32.864 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:29:32.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:33.024 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:29:33.024 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:29:33.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:29:33.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:29:33.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:33.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:33.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:33.644 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:29:33.644 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:29:34.364 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.005817,
17-03-18 04:29:34.864 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:29:34.864 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:29:34.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:34.884 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:29:34.884 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:29:34.884 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:29:35.034 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:29:35.844 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:29:35.844 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:29:35.894 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:35.914 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:29:35.914 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:29:36.014 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:29:36.014 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:29:36.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:36.044 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:29:36.044 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:29:36.044 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:29:36.174 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:29:36.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:36.674 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:36.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1767, R2=1836, Total=3603. Warn if over 250 bubbles per interval.
17-03-18 04:29:37.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:37.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:37.114 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:29:37.114 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:29:37.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:37.274 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:29:37.274 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:29:37.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:37.434 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:29:37.434 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:29:37.434 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:29:37.564 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:29:37.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:38.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:38.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:38.054 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:29:38.054 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:29:38.054 -07 000000012 INF: WaitCommand(10000) start
17-03-18 04:29:38.054 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:29:38.054 -07 000000455 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:29:39.274 -07 000000455 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:29:39.274 -07 000000455 INF: LanePump: Xmit /1?\r
17-03-18 04:29:39.304 -07 000000455 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:29:39.304 -07 000000455 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:29:39.434 -07 000000455 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:29:39.474 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:39.724 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.979922,
17-03-18 04:29:41.004 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:41.034 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:41.454 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:41.484 -07 000000455 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:41.484 -07 000000455 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:29:41.484 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:29:41.484 -07 000000455 INF: ===================  ===================
17-03-18 04:29:41.674 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:41.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1767, R2=1836, Total=3603. Warn if over 250 bubbles per interval.
17-03-18 04:29:46.104 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.997626,
17-03-18 04:29:46.674 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:46.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1767, R2=1836, Total=3603. Warn if over 250 bubbles per interval.
17-03-18 04:29:48.064 -07 000000012 INF: WaitCommand(10000) end
17-03-18 04:29:48.064 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:29:48.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:29:48.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:48.094 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:29:48.094 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:29:48.094 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:29:48.224 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:29:48.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:51.484 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.999021,
17-03-18 04:29:52.124 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:29:52.124 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1767, R2=1836, Total=3603. Warn if over 250 bubbles per interval.
17-03-18 04:29:54.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:54.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:54.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:54.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:55.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:55.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:55.744 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:55.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:29:56.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:56.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:56.224 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:29:56.224 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:29:56.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:56.384 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:29:56.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:29:56.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:56.544 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:29:56.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:29:56.544 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:29:56.674 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:29:56.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:29:56.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1768, R2=1837, Total=3605. Warn if over 250 bubbles per interval.
17-03-18 04:29:56.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:57.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:29:57.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:29:57.164 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:29:57.164 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:29:57.444 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.970374,
17-03-18 04:29:58.384 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:29:58.384 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:29:58.384 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:58.404 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:29:58.404 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:29:58.404 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:29:58.614 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:29:58.634 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:29:58.634 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:29:58.684 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:29:58.704 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:29:58.704 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:29:58.804 -07 000000610 INF: =================== Cycle #126, Pumping Reagent IMT (1) ===================
17-03-18 04:29:58.804 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:29:58.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:29:58.834 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:29:58.834 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:29:58.834 -07 000000610 INF: =================== Cycle #126, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:29:58.964 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:29:59.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:30:00.444 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:00.474 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:30:00.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:00.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:00.924 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:30:00.924 -07 000000610 INF: =================== Cycle #126, Pumping Reagent IMT (1) ===================
17-03-18 04:30:01.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:01.084 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:30:01.084 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:30:01.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:01.244 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:30:01.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:30:01.244 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:30:01.374 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:30:01.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:01.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:30:01.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1837, Total=3606. Warn if over 250 bubbles per interval.
17-03-18 04:30:01.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:01.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:01.864 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:30:01.864 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:30:02.804 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.99219,
17-03-18 04:30:03.084 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:30:03.084 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:30:03.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:30:03.104 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:30:03.104 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:30:03.104 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:30:03.334 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:30:03.354 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:30:03.354 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:30:03.404 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:30:03.424 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:30:03.424 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:30:03.524 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:30:03.524 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:30:03.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:03.554 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:30:03.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:30:03.554 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:30:03.684 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:30:03.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:30:04.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:04.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:04.624 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:30:04.624 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:30:04.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:04.784 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:30:04.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:30:04.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:04.944 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:30:04.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:30:04.944 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:30:05.074 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:30:05.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:05.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:05.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:05.564 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:30:05.564 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:30:05.564 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 65° ===================
17-03-18 04:30:05.564 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:30:05.564 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:30:05.564 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:30:05.574 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:30:05.574 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:30:05.574 -07 000000487 INF: FPGA: Recv TEC2EN 
17-03-18 04:30:05.584 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:30:05.584 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 65° ===================
17-03-18 04:30:05.584 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:30:05.584 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:30:07.324 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:30:07.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:08.164 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.015368,
17-03-18 04:30:11.674 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:13.524 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.000345,
17-03-18 04:30:16.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:16.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:18.884 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.03576,
17-03-18 04:30:21.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:21.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:24.244 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.004458,
17-03-18 04:30:26.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:29.604 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.014009,
17-03-18 04:30:31.674 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:31.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:34.964 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.970374,
17-03-18 04:30:35.594 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:30:35.594 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:30:35.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:30:35.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:35.724 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:30:35.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:30:35.724 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:30:35.854 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:30:35.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:30:36.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:36.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:36.464 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 04:30:36.464 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:30:36.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:36.624 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:30:36.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:30:36.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:36.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:36.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:30:36.784 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:30:36.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:30:36.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:30:36.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:30:36.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:37.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:37.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:37.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:30:37.404 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:30:37.404 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:30:37.404 -07 000000455 INF: WaitCommand(30000) start
17-03-18 04:30:37.404 -07 000000437 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:30:38.624 -07 000000437 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:30:38.624 -07 000000437 INF: LanePump: Xmit /1?\r
17-03-18 04:30:38.654 -07 000000437 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:30:38.654 -07 000000437 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:30:38.784 -07 000000437 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:30:38.824 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:30:40.324 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.993549,
17-03-18 04:30:41.164 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:41.194 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:30:41.614 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 04:30:41.644 -07 000000437 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:30:41.644 -07 000000437 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:30:41.644 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:30:41.644 -07 000000437 INF: ===================  ===================
17-03-18 04:30:41.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:41.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:45.684 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.008536,
17-03-18 04:30:46.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:46.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:51.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:51.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:51.794 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.033041,
17-03-18 04:30:56.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:30:56.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:30:57.174 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.030322,
17-03-18 04:31:01.674 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:01.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:02.534 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.028963,
17-03-18 04:31:06.674 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:06.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:07.414 -07 000000455 INF: WaitCommand(30000) end
17-03-18 04:31:07.414 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 22° ===================
17-03-18 04:31:07.414 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:31:07.624 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:31:07.624 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 04:31:07.634 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:07.634 -07 000000610 INF: =================== Cycle #126, Flow Cell Temp 22° ===================
17-03-18 04:31:07.634 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:31:07.634 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:31:07.634 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:31:07.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:07.674 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:31:07.674 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:31:07.674 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:31:07.804 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:31:07.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:08.534 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.008536,
17-03-18 04:31:10.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:11.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:11.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:11.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:11.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:11.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:11.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:11.904 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:31:11.904 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:31:12.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:12.064 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:31:12.064 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:31:12.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:12.224 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:31:12.224 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:31:12.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:31:12.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:31:12.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:12.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:12.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:12.844 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:31:12.844 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:31:13.894 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.003063,
17-03-18 04:31:14.064 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:31:14.064 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:31:14.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:31:14.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:31:14.084 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:31:14.084 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:31:14.234 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:31:14.254 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:31:14.254 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:31:14.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:31:14.324 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:31:14.324 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:31:14.424 -07 000000610 INF: =================== Cycle #126, Pumping Reagent USM (2) ===================
17-03-18 04:31:14.424 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:31:14.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:14.454 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:31:14.454 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:31:14.454 -07 000000610 INF: =================== Cycle #126, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:31:14.584 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:31:14.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:16.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:16.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:16.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:16.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:16.544 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:31:16.544 -07 000000610 INF: =================== Cycle #126, Pumping Reagent USM (2) ===================
17-03-18 04:31:16.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:16.674 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:16.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:16.704 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:31:16.704 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:31:16.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:16.864 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:31:16.864 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:31:16.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:31:16.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:31:17.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:17.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:17.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:17.484 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:31:17.484 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:31:18.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:31:18.704 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:31:18.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:31:18.724 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:31:18.724 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:31:18.724 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:31:18.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:31:18.894 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:31:18.894 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:31:18.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:31:18.964 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:31:18.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:31:19.064 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:31:19.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:31:19.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:19.094 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:31:19.094 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:31:19.094 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:31:19.224 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:31:19.254 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.999021,
17-03-18 04:31:19.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:20.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:20.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:20.164 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 04:31:20.164 -07 000000610 INF: =================== Cycle #126, Pumping Reagent PR2 (3) ===================
17-03-18 04:31:20.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:20.324 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:31:20.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:31:20.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:31:20.484 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:31:20.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:31:20.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:31:20.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:31:20.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:21.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:21.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:21.104 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:31:21.104 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:31:21.104 -07 000000455 INF: WaitCommand(10000) start
17-03-18 04:31:21.104 -07 000000487 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:31:21.104 -07 000000487 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:31:21.674 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:21.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:22.324 -07 000000487 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:31:22.324 -07 000000487 INF: LanePump: Xmit /1?\r
17-03-18 04:31:22.354 -07 000000487 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:31:22.354 -07 000000487 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:31:22.484 -07 000000487 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:31:22.524 -07 000000487 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:24.054 -07 000000487 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:24.084 -07 000000487 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:31:24.504 -07 000000487 INF: LanePump: Xmit /1Q\r
17-03-18 04:31:24.534 -07 000000487 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:31:24.534 -07 000000487 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:31:24.534 -07 000000487 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:31:24.534 -07 000000487 INF: ===================  ===================
17-03-18 04:31:24.614 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.008536,
17-03-18 04:31:26.674 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:29.974 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.990831,
17-03-18 04:31:31.114 -07 000000455 INF: WaitCommand(10000) end
17-03-18 04:31:31.114 -07 000000610 INF: =================== Cycle #126, Imaging ===================
17-03-18 04:31:31.114 -07 000000610 INF: Imaging Cycle 126: ScanTilesCommand Cycle 126 time start.
17-03-18 04:31:31.114 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:31:31.114 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:31:31.144 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:31:31.144 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:31:31.144 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:31:31.444 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:31:31.464 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:31:31.464 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:31:31.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:31:31.534 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:31:31.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:31.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:31.534 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:31:31.534 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:31.534 -07 000000480 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:31:31.534 -07 000000606 INF: FPGA: Recv EXLED1ON 
17-03-18 04:31:31.544 -07 000000480 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:31:31.544 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:31:31.544 -07 000000461 INF: FPGA: Recv EXLED1ADCR 23211
17-03-18 04:31:31.554 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:31.554 -07 000000480 INF: RedLED: Using Red data: Photodiode ADC 23211 --> 7.5 mW (old method), or 205.7 mW (new method). Difference = 198.2 mW
17-03-18 04:31:31.554 -07 000000480 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:31:31.554 -07 000000512 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:31:31.564 -07 000000480 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:31.564 -07 000000480 INF: RedLED: LED was on for 20 ms
17-03-18 04:31:31.564 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 04:31:31.564 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:31:31.564 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:31.564 -07 000000480 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:31:31.564 -07 000000512 INF: FPGA: Recv EXLED2ON 
17-03-18 04:31:31.574 -07 000000480 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:31:31.574 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:31:31.574 -07 000000512 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 04:31:31.584 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:31.584 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 04:31:31.584 -07 000000480 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:31:31.584 -07 000000461 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:31:31.594 -07 000000480 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:31.594 -07 000000480 INF: GreenLED: LED was on for 20 ms
17-03-18 04:31:31.594 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:31:31.594 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:31:31.594 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 04:31:31.604 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:31:31.604 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:31:31.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:31.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:32.104 -07 000000512 INF: FPGA: Recv EMOUT
17-03-18 04:31:32.104 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:31:32.104 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:31:32.104 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 04:31:32.114 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:31:32.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:31:32.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126554837788643. ------
17-03-18 04:31:32.114 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:32.114 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17851 mm
17-03-18 04:31:32.114 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:31:32.114 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:32.114 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38995, sync = True, waitForSettling = False)
17-03-18 04:31:32.114 -07 000000487 INF: Z Motor: Moving to -0.178508 mm, started at -0.126555 mm, distance = -51.95 um
17-03-18 04:31:32.114 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:31:32.114 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 04:31:32.124 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:31:32.124 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:32.124 -07 000000461 INF: FPGA: Recv YRDPOS 154386
17-03-18 04:31:32.134 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:32.134 -07 000000455 INF: Y Motor: Encoder = 154386 = motor step 120614.1 = 75.3838 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:32.134 -07 000000487 INF: FPGA: Xmit ZDACW 38995\n [Z Motor]
17-03-18 04:31:32.134 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:31:32.134 -07 000000455 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:31:32.134 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:31:32.144 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:31:32.144 -07 000000487 INF: FPGA: 'ZDACW 38995' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:31:32.154 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:31:32.164 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:32.164 -07 000000461 INF: FPGA: Recv ZDACR 38995
17-03-18 04:31:32.174 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:31:32.174 -07 000000487 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:31:32.344 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:31:32.344 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:31:33.834 -07 000000618 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 04:31:33.834 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1700 ms overall
17-03-18 04:31:33.834 -07 000000455 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:31:33.834 -07 000000455 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24754 steps, but required 24782 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 04:31:33.834 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1700 ms, distance = 15.472 mm, average velocity = 9.101 mm/sec
17-03-18 04:31:35.334 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.98264,
17-03-18 04:31:36.674 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:36.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:36.684 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:36.684 -07 000000618 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:31:36.694 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:36.694 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:36.724 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:31:36.724 -07 000000455 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:31:36.724 -07 000000455 INF: Y Motor: Moved to 59.9102 after 4602 ms
17-03-18 04:31:36.724 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178508 mm (DAC = 38995)
17-03-18 04:31:36.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.724 -07 000000012 INF: FPGA: Recv ZSGSRD 37079
17-03-18 04:31:36.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:31:36.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.734 -07 000000626 INF: FPGA: Recv ZSGSRD 37078
17-03-18 04:31:36.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.744 -07 000000487 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:31:36.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.754 -07 000000487 INF: FPGA: Recv ZSGSRD 37080
17-03-18 04:31:36.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.764 -07 000000606 INF: FPGA: Recv ZSGSRD 37078
17-03-18 04:31:36.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.774 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.774 -07 000000487 INF: FPGA: Recv ZSGSRD 37081
17-03-18 04:31:36.784 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.784 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.784 -07 000000461 INF: FPGA: Recv ZSGSRD 37075
17-03-18 04:31:36.794 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.794 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.794 -07 000000012 INF: FPGA: Recv ZSGSRD 37079
17-03-18 04:31:36.804 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.804 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.804 -07 000000480 INF: FPGA: Recv ZSGSRD 37083
17-03-18 04:31:36.814 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.814 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:36.814 -07 000000462 INF: FPGA: Recv ZSGSRD 37076
17-03-18 04:31:36.824 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.824 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:36.824 -07 000000487 INF: FPGA: Recv ZPIEZORD 33274
17-03-18 04:31:36.834 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:36.834 -07 000000512 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.4 V.
17-03-18 04:31:36.834 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37078 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37073 (-177.6 uncal um), Max = 37083 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:31:36.834 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37078, posNoise = 5, negNoise = 5
17-03-18 04:31:36.834 -07 000000512 INF: Z Motor: After move to -0.178508, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:36.834 -07 000000512 INF: Z Motor: Settle wait time = 4606 ms, measure time = 105 ms (allowed 150 ms), total time = 4711 ms
17-03-18 04:31:36.834 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:31:36.884 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 04:31:36.884 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:31:36.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:36.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:36.884 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:36.884 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:31:36.884 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:36.884 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:36.894 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:36.894 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:31:36.914 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:31:36.914 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:31:36.914 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:31:36.914 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:31:36.934 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:31:36.934 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:31:36.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:31:36.974 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:31:37.274 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:31:37.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:31:37.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:31:37.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575894640, 0x0, 559484976) start.
17-03-18 04:31:37.314 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:31:37.314 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:31:37.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 04:31:37.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575894640, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 04:31:37.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:37.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:31:37.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:31:37.514 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:37.514 -07 000000487 INF: Image SNR check: start
17-03-18 04:31:37.514 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:37.524 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:31:37.524 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:31:37.524 -07 000000487 INF: Image SNR check: pass  [peak (Max-Min)=139.94]
17-03-18 04:31:37.524 -07 000000487 INF: Autofocus start
17-03-18 04:31:37.524 -07 000000487 INF: MeasureProfile start
17-03-18 04:31:37.534 -07 000000487 INF: MeasureProfile done
17-03-18 04:31:37.534 -07 000000487 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:31:37.534 -07 000000487 INF: Autofocus finished
17-03-18 04:31:37.724 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:31:37.724 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:31:37.724 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178520289803348. ----------
17-03-18 04:31:37.724 -07 000000610 INF: Cycle	126	Tile	1	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:31:37.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37475, sync = True, waitForSettling = True)
17-03-18 04:31:37.734 -07 000000610 INF: Z Motor: Moving to -0.171550 mm, started at -0.178520 mm, distance = 6.97 um
17-03-18 04:31:37.734 -07 000000610 INF: FPGA: Xmit ZDACW 37475\n [Z Motor]
17-03-18 04:31:37.734 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:31:37.744 -07 000000610 INF: FPGA: 'ZDACW 37475' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:37.744 -07 000000606 INF: FPGA: Recv ZDACR 37475
17-03-18 04:31:37.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:31:37.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.904 -07 000000618 INF: FPGA: Recv ZSGSRD 35994
17-03-18 04:31:37.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.914 -07 000000606 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:31:37.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.924 -07 000000618 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:31:37.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35999
17-03-18 04:31:37.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.944 -07 000000487 INF: FPGA: Recv ZSGSRD 35994
17-03-18 04:31:37.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.954 -07 000000618 INF: FPGA: Recv ZSGSRD 35993
17-03-18 04:31:37.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.964 -07 000000012 INF: FPGA: Recv ZSGSRD 35998
17-03-18 04:31:37.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:31:37.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.974 -07 000000455 INF: FPGA: Recv ZSGSRD 35995
17-03-18 04:31:37.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.984 -07 000000012 INF: FPGA: Recv ZSGSRD 35995
17-03-18 04:31:37.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:37.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:37.994 -07 000000012 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:31:38.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:38.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:38.004 -07 000000455 INF: FPGA: Recv ZPIEZORD 31821
17-03-18 04:31:38.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:38.014 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -9.2 V.
17-03-18 04:31:38.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35995 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35994 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35990 (-170.7 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:31:38.014 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35995, posNoise = 4, negNoise = 5
17-03-18 04:31:38.014 -07 000000610 INF: Z Motor: After move to -0.171550, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:38.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:31:38.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:38.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:38.014 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:38.014 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:38.014 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:31:38.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:38.014 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:31:38.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:31:38.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:38.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:31:38.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:31:38.014 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:31:38.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:38.014 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:31:38.034 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:31:38.034 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:31:38.034 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:31:38.034 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:31:38.044 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:31:38.044 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:31:38.054 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:31:38.054 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 04:31:38.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37652 150\n [Camera]
17-03-18 04:31:38.254 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:31:38.684 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:31:38.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:31:38.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:38.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:31:38.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:31:38.684 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:38.684 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:38.684 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:31:38.694 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:38.694 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 04:31:38.874 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37652 807
17-03-18 04:31:39.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:31:39.084 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:31:39.084 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:31:39.084 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:39.084 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:31:39.084 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:31:39.084 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:39.094 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:39.094 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:39.094 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:31:39.094 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:31:39.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:31:39.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:31:39.224 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:39.344 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:31:39.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:31:39.354 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:39.354 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:39.354 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:31:39.354 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:39.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 04:31:39.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:31:39.414 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:31:39.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37652 150' command took 2 ms to send, 1349 ms to get response, and 1361 ms overall
17-03-18 04:31:39.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:31:39.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171562868053821. ------
17-03-18 04:31:39.424 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17781 mm
17-03-18 04:31:39.424 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:31:39.424 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:31:39.424 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:31:39.424 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38843, sync = True, waitForSettling = False)
17-03-18 04:31:39.424 -07 000000487 INF: Z Motor: Moving to -0.177812 mm, started at -0.171563 mm, distance = -6.25 um
17-03-18 04:31:39.434 -07 000000487 INF: FPGA: Xmit ZDACW 38843\n [Z Motor]
17-03-18 04:31:39.444 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:39.454 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:39.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:31:39.754 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:31:39.754 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:39.754 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:31:39.754 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:31:39.754 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:39.764 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:31:39.764 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 04:31:39.764 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:31:39.774 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:31:39.774 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:39.774 -07 000000606 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:31:39.774 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 311 ms to get response, and 343 ms overall
17-03-18 04:31:39.774 -07 000000512 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:39.774 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:31:39.774 -07 000000512 INF: Y Motor: Moving 1332 steps2
17-03-18 04:31:39.774 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 321 ms to get response, and 346 ms overall
17-03-18 04:31:39.774 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 04:31:39.774 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:31:39.774 -07 000000487 INF: FPGA: 'ZDACW 38843' command took 0 ms to send, 331 ms to get response, and 342 ms overall
17-03-18 04:31:39.784 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:31:39.794 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:39.794 -07 000000462 INF: FPGA: Recv ZDACR 38843
17-03-18 04:31:39.804 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:31:39.804 -07 000000487 INF: Z Motor: MoveAbsStepped took 371 ms (did NOT wait for settling yet))
17-03-18 04:31:39.984 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:31:39.984 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 04:31:40.154 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:31:40.154 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-18 04:31:40.194 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:40.194 -07 000000606 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:31:40.204 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:40.204 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:40.204 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:31:40.204 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.202 mm/sec
17-03-18 04:31:40.694 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.015368,
17-03-18 04:31:41.154 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:41.154 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:31:41.164 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:41.164 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:41.194 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:31:41.194 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:31:41.194 -07 000000512 INF: Y Motor: Moved to 60.7324 after 1764 ms (table move)
17-03-18 04:31:41.194 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177812 mm (DAC = 38843)
17-03-18 04:31:41.194 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.194 -07 000000487 INF: FPGA: Recv ZSGSRD 36977
17-03-18 04:31:41.204 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:31:41.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.204 -07 000000461 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:31:41.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.214 -07 000000487 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:31:41.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.224 -07 000000581 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:31:41.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.234 -07 000000606 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:31:41.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.244 -07 000000502 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:31:41.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.254 -07 000000606 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:31:41.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.264 -07 000000461 INF: FPGA: Recv ZSGSRD 36968
17-03-18 04:31:41.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.274 -07 000000487 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:31:41.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:41.284 -07 000000461 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:31:41.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.294 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:41.294 -07 000000462 INF: FPGA: Recv ZPIEZORD 33125
17-03-18 04:31:41.304 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:41.304 -07 000000626 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 04:31:41.304 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36969 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36969 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36962 (-176.9 uncal um), Max = 36977 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:31:41.304 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36969, posNoise = 8, negNoise = 7
17-03-18 04:31:41.304 -07 000000626 INF: Z Motor: After move to -0.177812, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:41.304 -07 000000626 INF: Z Motor: Settle wait time = 1767 ms, measure time = 104 ms (allowed 150 ms), total time = 1871 ms
17-03-18 04:31:41.304 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:31:41.354 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1924 ms
17-03-18 04:31:41.354 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:31:41.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:41.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:41.354 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:41.354 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:41.354 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:31:41.354 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:41.364 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:41.364 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:31:41.364 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:31:41.364 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:31:41.374 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:31:41.374 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:31:41.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:31:41.424 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:31:41.674 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:41.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:41.724 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:31:41.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:31:41.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:31:41.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575894640, 0x0, 559484976) start.
17-03-18 04:31:41.764 -07 000000461 INF: FPGA: Recv @CAMSNAP 384
17-03-18 04:31:41.764 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:31:41.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 388 ms overall
17-03-18 04:31:41.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575894640, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:31:41.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:41.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:31:41.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:31:41.864 -07 000000462 INF: Autofocus start
17-03-18 04:31:41.864 -07 000000462 INF: MeasureProfile start
17-03-18 04:31:41.864 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:41.864 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:41.874 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:31:41.874 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:31:41.874 -07 000000462 INF: MeasureProfile done
17-03-18 04:31:41.874 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:31:41.874 -07 000000462 INF: Autofocus finished
17-03-18 04:31:42.074 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:31:42.074 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:31:42.074 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177820050679896. ----------
17-03-18 04:31:42.074 -07 000000610 INF: Cycle	126	Tile	2	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:31:42.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37357, sync = True, waitForSettling = True)
17-03-18 04:31:42.084 -07 000000610 INF: Z Motor: Moving to -0.171009 mm, started at -0.177820 mm, distance = 6.81 um
17-03-18 04:31:42.084 -07 000000610 INF: FPGA: Xmit ZDACW 37357\n [Z Motor]
17-03-18 04:31:42.084 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:31:42.094 -07 000000610 INF: FPGA: 'ZDACW 37357' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:42.094 -07 000000569 INF: FPGA: Recv ZDACR 37357
17-03-18 04:31:42.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:31:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.254 -07 000000512 INF: FPGA: Recv ZSGSRD 35913
17-03-18 04:31:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:31:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.274 -07 000000512 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:31:42.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.284 -07 000000581 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:31:42.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.294 -07 000000512 INF: FPGA: Recv ZSGSRD 35913
17-03-18 04:31:42.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:31:42.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.314 -07 000000512 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:31:42.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.324 -07 000000581 INF: FPGA: Recv ZSGSRD 35910
17-03-18 04:31:42.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.334 -07 000000512 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:31:42.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:42.344 -07 000000581 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:31:42.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:42.354 -07 000000581 INF: FPGA: Recv ZPIEZORD 31712
17-03-18 04:31:42.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:42.364 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.3 V.
17-03-18 04:31:42.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35909 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35904 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:31:42.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35909, posNoise = 4, negNoise = 5
17-03-18 04:31:42.364 -07 000000610 INF: Z Motor: After move to -0.171009, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:42.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:31:42.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:42.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:42.364 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:42.364 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:42.364 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:31:42.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:42.364 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:31:42.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:31:42.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:42.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:31:42.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:31:42.364 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:31:42.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:42.364 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:31:42.364 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:31:42.374 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:31:42.384 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:31:42.384 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:31:42.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:31:42.384 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:31:42.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37534 150\n [Camera]
17-03-18 04:31:42.584 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:31:43.014 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:31:43.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:31:43.014 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:43.014 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:43.014 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-18 04:31:43.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:31:43.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:31:43.014 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:43.014 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:43.014 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-18 04:31:43.204 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 807
17-03-18 04:31:43.354 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:31:43.404 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:31:43.414 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:31:43.414 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:43.414 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:31:43.414 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:31:43.414 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:43.414 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:31:43.414 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:31:43.414 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:31:43.424 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:31:43.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:31:43.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:31:43.554 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:43.554 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:43.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:31:43.564 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:31:43.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:31:43.564 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:43.564 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:43.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:31:43.864 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:31:43.864 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:31:43.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37534 150' command took 2 ms to send, 1465 ms to get response, and 1476 ms overall
17-03-18 04:31:43.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:31:43.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171010385809629. ------
17-03-18 04:31:43.874 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:43.874 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17787 mm
17-03-18 04:31:43.874 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:31:43.874 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:31:43.874 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:31:43.874 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:43.874 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38855, sync = True, waitForSettling = False)
17-03-18 04:31:43.874 -07 000000626 INF: Z Motor: Moving to -0.177867 mm, started at -0.171010 mm, distance = -6.86 um
17-03-18 04:31:43.884 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:31:43.884 -07 000000626 INF: FPGA: Xmit ZDACW 38855\n [Z Motor]
17-03-18 04:31:43.884 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:31:43.894 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:43.894 -07 000000626 INF: FPGA: 'ZDACW 38855' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:31:43.894 -07 000000455 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:31:43.904 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:31:43.904 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:31:43.904 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:43.904 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:31:43.904 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:31:43.914 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:43.914 -07 000000012 INF: FPGA: Recv ZDACR 38855
17-03-18 04:31:43.924 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:31:43.924 -07 000000626 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:31:43.924 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:31:43.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:31:43.964 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:31:43.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:43.964 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:31:43.964 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:31:43.964 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:43.964 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:31:43.964 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:31:43.964 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:31:43.974 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:31:44.104 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:31:44.104 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:31:44.294 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:31:44.294 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:31:44.344 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:44.354 -07 000000606 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:31:44.354 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:31:44.354 -07 000000512 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:44.354 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:31:44.354 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 04:31:45.304 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:45.304 -07 000000606 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:31:45.314 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:45.314 -07 000000512 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:45.344 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:31:45.344 -07 000000512 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:31:45.344 -07 000000512 INF: Y Motor: Moved to 61.5630 after 1466 ms (table move)
17-03-18 04:31:45.344 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177867 mm (DAC = 38855)
17-03-18 04:31:45.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.344 -07 000000569 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:31:45.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:31:45.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.354 -07 000000512 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:31:45.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.364 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.364 -07 000000606 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:31:45.374 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36977
17-03-18 04:31:45.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.384 -07 000000569 INF: FPGA: Recv ZSGSRD 36983
17-03-18 04:31:45.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.394 -07 000000606 INF: FPGA: Recv ZSGSRD 36975
17-03-18 04:31:45.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.404 -07 000000462 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:31:45.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.414 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.414 -07 000000512 INF: FPGA: Recv ZSGSRD 36977
17-03-18 04:31:45.424 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:31:45.424 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.424 -07 000000462 INF: FPGA: Recv ZSGSRD 36970
17-03-18 04:31:45.434 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:45.454 -07 000000606 INF: FPGA: Recv ZSGSRD 36982
17-03-18 04:31:45.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:31:45.464 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:45.464 -07 000000512 INF: FPGA: Recv ZPIEZORD 33084
17-03-18 04:31:45.474 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:45.474 -07 000000590 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.6 V.
17-03-18 04:31:45.474 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36970 (-176.9 uncal um), Max = 36983 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:31:45.474 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 7, negNoise = 6
17-03-18 04:31:45.474 -07 000000590 INF: Z Motor: After move to -0.177867, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:45.474 -07 000000590 INF: Z Motor: Settle wait time = 1468 ms, measure time = 126 ms (allowed 150 ms), total time = 1594 ms
17-03-18 04:31:45.474 -07 000000590 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms
17-03-18 04:31:45.504 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:31:45.504 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:31:45.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:45.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:45.504 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:45.504 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:45.504 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:31:45.504 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:45.504 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:45.504 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:31:45.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:45.514 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:31:45.514 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:31:45.514 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:31:45.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:31:45.564 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:31:45.864 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:31:45.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:31:45.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:31:45.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:31:45.904 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:31:45.904 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 04:31:45.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:31:45.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:31:45.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:45.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:31:45.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:31:46.004 -07 000000512 INF: Autofocus start
17-03-18 04:31:46.004 -07 000000512 INF: MeasureProfile start
17-03-18 04:31:46.004 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:46.014 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:46.014 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:31:46.014 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:31:46.024 -07 000000512 INF: MeasureProfile done
17-03-18 04:31:46.024 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:31:46.024 -07 000000512 INF: Autofocus finished
17-03-18 04:31:46.054 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.028963,
17-03-18 04:31:46.214 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:31:46.214 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:31:46.214 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177865020164888. ----------
17-03-18 04:31:46.224 -07 000000610 INF: Cycle	126	Tile	3	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:31:46.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37352, sync = True, waitForSettling = True)
17-03-18 04:31:46.224 -07 000000610 INF: Z Motor: Moving to -0.170986 mm, started at -0.177865 mm, distance = 6.88 um
17-03-18 04:31:46.224 -07 000000610 INF: FPGA: Xmit ZDACW 37352\n [Z Motor]
17-03-18 04:31:46.224 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:31:46.234 -07 000000610 INF: FPGA: 'ZDACW 37352' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:31:46.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:46.234 -07 000000455 INF: FPGA: Recv ZDACR 37352
17-03-18 04:31:46.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:31:46.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.394 -07 000000487 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:31:46.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:46.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.404 -07 000000581 INF: FPGA: Recv ZSGSRD 35913
17-03-18 04:31:46.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:31:46.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.424 -07 000000626 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:31:46.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.434 -07 000000480 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:31:46.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.444 -07 000000590 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:31:46.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.454 -07 000000512 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:31:46.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:31:46.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.474 -07 000000487 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:31:46.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:46.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:31:46.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:46.494 -07 000000581 INF: FPGA: Recv ZPIEZORD 31643
17-03-18 04:31:46.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:46.504 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.4 V.
17-03-18 04:31:46.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:31:46.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 6, negNoise = 4
17-03-18 04:31:46.504 -07 000000610 INF: Z Motor: After move to -0.170986, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:46.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:31:46.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:46.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:46.504 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:46.504 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:46.504 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:31:46.504 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:31:46.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:46.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:31:46.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:46.504 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:31:46.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:31:46.504 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:31:46.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:46.514 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:31:46.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:31:46.514 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:31:46.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:31:46.524 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:31:46.524 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:31:46.524 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:31:46.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37529 150\n [Camera]
17-03-18 04:31:46.674 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:46.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:46.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:31:47.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:31:47.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:31:47.144 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:47.144 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:31:47.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:31:47.144 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:47.144 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:47.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:31:47.154 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:47.154 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:31:47.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37529 807
17-03-18 04:31:47.484 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:31:47.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:31:47.524 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:31:47.524 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:47.534 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:47.534 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:31:47.544 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:31:47.544 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:31:47.544 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:47.544 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:47.544 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:31:47.694 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:31:47.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:31:47.694 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:47.694 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:47.694 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:31:47.694 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:31:47.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:31:47.694 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:47.694 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:47.694 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:31:47.884 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:31:47.884 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:31:47.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37529 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:31:47.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:31:47.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.170997537385346. ------
17-03-18 04:31:47.884 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:47.884 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17711 mm
17-03-18 04:31:47.884 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:31:47.894 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:31:47.894 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 04:31:47.894 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:47.894 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38690, sync = True, waitForSettling = False)
17-03-18 04:31:47.894 -07 000000487 INF: Z Motor: Moving to -0.177111 mm, started at -0.170998 mm, distance = -6.11 um
17-03-18 04:31:47.894 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:47.894 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:31:47.894 -07 000000455 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:31:47.904 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:47.904 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:31:47.904 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:47.904 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:31:47.904 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:31:47.914 -07 000000487 INF: FPGA: Xmit ZDACW 38690\n [Z Motor]
17-03-18 04:31:47.914 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:31:47.924 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:31:47.924 -07 000000487 INF: FPGA: 'ZDACW 38690' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:31:47.934 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:47.934 -07 000000626 INF: FPGA: Recv ZDACR 38690
17-03-18 04:31:47.944 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:31:47.944 -07 000000487 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:31:48.094 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:31:48.094 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:31:48.094 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:48.094 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:31:48.094 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:31:48.094 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:48.104 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:48.104 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:31:48.104 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:31:48.104 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:31:48.104 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 04:31:48.104 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:31:48.294 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:31:48.294 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:31:48.354 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:48.354 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:31:48.364 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:48.364 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:48.364 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:31:48.364 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.147 mm/sec
17-03-18 04:31:49.314 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:49.314 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:31:49.324 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:49.324 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:49.354 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:31:49.354 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:31:49.354 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1460 ms (table move)
17-03-18 04:31:49.354 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177111 mm (DAC = 38690)
17-03-18 04:31:49.354 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.354 -07 000000455 INF: FPGA: Recv ZSGSRD 36867
17-03-18 04:31:49.364 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:31:49.364 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.364 -07 000000480 INF: FPGA: Recv ZSGSRD 36862
17-03-18 04:31:49.374 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.374 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36861
17-03-18 04:31:49.384 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.384 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.384 -07 000000487 INF: FPGA: Recv ZSGSRD 36863
17-03-18 04:31:49.394 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:31:49.394 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.394 -07 000000461 INF: FPGA: Recv ZSGSRD 36862
17-03-18 04:31:49.404 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.404 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.404 -07 000000487 INF: FPGA: Recv ZSGSRD 36856
17-03-18 04:31:49.414 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36861
17-03-18 04:31:49.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.424 -07 000000626 INF: FPGA: Recv ZSGSRD 36857
17-03-18 04:31:49.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.434 -07 000000512 INF: FPGA: Recv ZSGSRD 36864
17-03-18 04:31:49.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:49.444 -07 000000487 INF: FPGA: Recv ZSGSRD 36862
17-03-18 04:31:49.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.454 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:49.454 -07 000000487 INF: FPGA: Recv ZPIEZORD 32949
17-03-18 04:31:49.464 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:49.464 -07 000000606 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.6 V.
17-03-18 04:31:49.464 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36862 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36862 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36856 (-176.2 uncal um), Max = 36867 (-176.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:31:49.464 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36862, posNoise = 5, negNoise = 6
17-03-18 04:31:49.464 -07 000000606 INF: Z Motor: After move to -0.177111, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:49.464 -07 000000606 INF: Z Motor: Settle wait time = 1463 ms, measure time = 106 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:31:49.464 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:31:49.514 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:31:49.514 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:31:49.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:49.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:49.514 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:49.514 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:49.514 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:31:49.514 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:49.514 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:31:49.514 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:31:49.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:31:49.524 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:31:49.524 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:31:49.524 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:31:49.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:31:49.574 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:31:49.874 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:31:49.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:31:49.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:31:49.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:31:49.914 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:31:49.914 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:31:49.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:31:49.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:31:49.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:49.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:31:49.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:31:50.014 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:50.014 -07 000000512 INF: Autofocus start
17-03-18 04:31:50.014 -07 000000512 INF: MeasureProfile start
17-03-18 04:31:50.014 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:50.024 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:31:50.024 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:31:50.034 -07 000000512 INF: MeasureProfile done
17-03-18 04:31:50.034 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:31:50.034 -07 000000512 INF: Autofocus finished
17-03-18 04:31:50.224 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:31:50.224 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:31:50.224 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177132659980727. ----------
17-03-18 04:31:50.224 -07 000000610 INF: Cycle	126	Tile	4	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:31:50.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37205, sync = True, waitForSettling = True)
17-03-18 04:31:50.234 -07 000000610 INF: Z Motor: Moving to -0.170314 mm, started at -0.177133 mm, distance = 6.82 um
17-03-18 04:31:50.234 -07 000000610 INF: FPGA: Xmit ZDACW 37205\n [Z Motor]
17-03-18 04:31:50.234 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:31:50.244 -07 000000610 INF: FPGA: 'ZDACW 37205' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:50.244 -07 000000487 INF: FPGA: Recv ZDACR 37205
17-03-18 04:31:50.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:31:50.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.404 -07 000000512 INF: FPGA: Recv ZSGSRD 35805
17-03-18 04:31:50.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.414 -07 000000581 INF: FPGA: Recv ZSGSRD 35798
17-03-18 04:31:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.424 -07 000000618 INF: FPGA: Recv ZSGSRD 35800
17-03-18 04:31:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.434 -07 000000487 INF: FPGA: Recv ZSGSRD 35801
17-03-18 04:31:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.444 -07 000000512 INF: FPGA: Recv ZSGSRD 35803
17-03-18 04:31:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.454 -07 000000487 INF: FPGA: Recv ZSGSRD 35804
17-03-18 04:31:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.464 -07 000000618 INF: FPGA: Recv ZSGSRD 35806
17-03-18 04:31:50.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.474 -07 000000581 INF: FPGA: Recv ZSGSRD 35805
17-03-18 04:31:50.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.484 -07 000000618 INF: FPGA: Recv ZSGSRD 35803
17-03-18 04:31:50.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:50.494 -07 000000581 INF: FPGA: Recv ZSGSRD 35802
17-03-18 04:31:50.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:50.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:50.514 -07 000000512 INF: FPGA: Recv ZPIEZORD 31547
17-03-18 04:31:50.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:31:50.524 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.4 V.
17-03-18 04:31:50.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35803 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35803 (-169.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35798 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:31:50.524 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35803, posNoise = 3, negNoise = 5
17-03-18 04:31:50.524 -07 000000610 INF: Z Motor: After move to -0.170314, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:50.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 04:31:50.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:50.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:50.524 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:50.524 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:50.524 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:31:50.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:50.524 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:31:50.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:31:50.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:31:50.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:31:50.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:31:50.524 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:31:50.534 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:50.534 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:31:50.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:31:50.534 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:31:50.534 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:31:50.534 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:31:50.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:31:50.544 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:31:50.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37382 150\n [Camera]
17-03-18 04:31:50.744 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:31:51.174 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:31:51.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:31:51.174 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:51.174 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:51.174 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:31:51.174 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:31:51.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:31:51.174 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:51.174 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:51.174 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:31:51.354 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37382 807
17-03-18 04:31:51.414 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.023489,
17-03-18 04:31:51.504 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:31:51.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:31:51.554 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:31:51.554 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:51.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:31:51.554 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:31:51.554 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:51.554 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:31:51.554 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:31:51.554 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:31:51.564 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:31:51.674 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:51.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:51.714 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:31:51.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:31:51.714 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:51.714 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:51.714 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:31:51.714 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:31:51.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:31:51.714 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:51.714 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:51.714 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:31:51.904 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:31:51.904 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:31:51.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37382 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-18 04:31:51.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:31:51.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170329419322602. ------
17-03-18 04:31:51.904 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:51.904 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17692 mm
17-03-18 04:31:51.904 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:31:52.034 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:52.034 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38649, sync = True, waitForSettling = False)
17-03-18 04:31:52.034 -07 000000581 INF: Z Motor: Moving to -0.176924 mm, started at -0.170329 mm, distance = -6.59 um
17-03-18 04:31:52.034 -07 000000581 INF: FPGA: Xmit ZDACW 38649\n [Z Motor]
17-03-18 04:31:52.034 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:31:52.034 -07 000000618 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:31:52.034 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 126 ms to get response, and 127 ms overall
17-03-18 04:31:52.034 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:31:52.044 -07 000000581 INF: FPGA: 'ZDACW 38649' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:31:52.044 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:31:52.054 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:52.054 -07 000000462 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:31:52.064 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:52.064 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:31:52.064 -07 000000618 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:52.064 -07 000000618 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:31:52.064 -07 000000618 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:31:52.064 -07 000000382 INF: FPGA: Recv ZDACR 38649
17-03-18 04:31:52.074 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:31:52.074 -07 000000581 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 04:31:52.074 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:31:52.114 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:31:52.114 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:31:52.114 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:52.114 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:31:52.114 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:31:52.114 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:52.114 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:52.124 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:31:52.124 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:31:52.124 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:31:52.244 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:31:52.244 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-18 04:31:52.444 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:31:52.444 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:31:52.494 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:52.504 -07 000000462 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:31:52.504 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:31:52.504 -07 000000618 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:52.504 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:31:52.504 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-18 04:31:53.454 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:53.454 -07 000000626 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:31:53.464 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:53.464 -07 000000618 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:53.494 -07 000000618 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:31:53.494 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:31:53.494 -07 000000618 INF: Y Motor: Moved to 63.2236 after 1453 ms (table move)
17-03-18 04:31:53.494 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176924 mm (DAC = 38649)
17-03-18 04:31:53.494 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.494 -07 000000626 INF: FPGA: Recv ZSGSRD 36821
17-03-18 04:31:53.504 -07 000000480 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:31:53.504 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.504 -07 000000581 INF: FPGA: Recv ZSGSRD 36827
17-03-18 04:31:53.514 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.514 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.514 -07 000000606 INF: FPGA: Recv ZSGSRD 36833
17-03-18 04:31:53.524 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.524 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.524 -07 000000590 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:31:53.534 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.534 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.534 -07 000000626 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:31:53.544 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.544 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.544 -07 000000581 INF: FPGA: Recv ZSGSRD 36830
17-03-18 04:31:53.554 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.554 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.554 -07 000000606 INF: FPGA: Recv ZSGSRD 36825
17-03-18 04:31:53.564 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.564 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.564 -07 000000462 INF: FPGA: Recv ZSGSRD 36827
17-03-18 04:31:53.574 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.574 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36830
17-03-18 04:31:53.584 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.584 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:53.584 -07 000000461 INF: FPGA: Recv ZSGSRD 36828
17-03-18 04:31:53.594 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.594 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:53.594 -07 000000590 INF: FPGA: Recv ZPIEZORD 32958
17-03-18 04:31:53.604 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:53.604 -07 000000480 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.6 V.
17-03-18 04:31:53.604 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36829 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36829 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36821 (-176.0 uncal um), Max = 36835 (-176.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:31:53.604 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36829, posNoise = 6, negNoise = 8
17-03-18 04:31:53.604 -07 000000480 INF: Z Motor: After move to -0.176924, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:53.604 -07 000000480 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:31:53.604 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:31:53.654 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1740 ms
17-03-18 04:31:53.654 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:31:53.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:53.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:53.654 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:53.654 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:53.654 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:31:53.654 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:53.664 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:53.664 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:31:53.664 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:31:53.664 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:31:53.664 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:31:53.664 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:31:53.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:31:53.714 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:31:54.014 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:31:54.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:31:54.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:31:54.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:31:54.054 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:31:54.054 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:31:54.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:31:54.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:31:54.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:54.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:31:54.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:31:54.154 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:54.154 -07 000000581 INF: Autofocus start
17-03-18 04:31:54.154 -07 000000581 INF: MeasureProfile start
17-03-18 04:31:54.154 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:54.164 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:31:54.164 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:31:54.164 -07 000000581 INF: MeasureProfile done
17-03-18 04:31:54.164 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:31:54.164 -07 000000581 INF: Autofocus finished
17-03-18 04:31:54.364 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:31:54.364 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:31:54.364 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.176920660980049. ----------
17-03-18 04:31:54.364 -07 000000610 INF: Cycle	126	Tile	5	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:31:54.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37164, sync = True, waitForSettling = True)
17-03-18 04:31:54.374 -07 000000610 INF: Z Motor: Moving to -0.170126 mm, started at -0.176921 mm, distance = 6.79 um
17-03-18 04:31:54.374 -07 000000610 INF: FPGA: Xmit ZDACW 37164\n [Z Motor]
17-03-18 04:31:54.374 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:31:54.384 -07 000000610 INF: FPGA: 'ZDACW 37164' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:31:54.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:54.384 -07 000000462 INF: FPGA: Recv ZDACR 37164
17-03-18 04:31:54.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:31:54.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.544 -07 000000447 INF: FPGA: Recv ZSGSRD 35780
17-03-18 04:31:54.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:54.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.554 -07 000000012 INF: FPGA: Recv ZSGSRD 35773
17-03-18 04:31:54.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.564 -07 000000012 INF: FPGA: Recv ZSGSRD 35769
17-03-18 04:31:54.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.574 -07 000000012 INF: FPGA: Recv ZSGSRD 35772
17-03-18 04:31:54.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.584 -07 000000012 INF: FPGA: Recv ZSGSRD 35776
17-03-18 04:31:54.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.594 -07 000000012 INF: FPGA: Recv ZSGSRD 35771
17-03-18 04:31:54.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.604 -07 000000012 INF: FPGA: Recv ZSGSRD 35771
17-03-18 04:31:54.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35775
17-03-18 04:31:54.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.624 -07 000000382 INF: FPGA: Recv ZSGSRD 35774
17-03-18 04:31:54.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:54.634 -07 000000012 INF: FPGA: Recv ZSGSRD 35773
17-03-18 04:31:54.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:54.644 -07 000000512 INF: FPGA: Recv ZPIEZORD 31519
17-03-18 04:31:54.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:54.654 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.4 V.
17-03-18 04:31:54.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35773 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35773 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35769 (-169.2 uncal um), Max = 35780 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:31:54.654 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35773, posNoise = 7, negNoise = 4
17-03-18 04:31:54.654 -07 000000610 INF: Z Motor: After move to -0.170126, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:54.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:31:54.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:54.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:54.654 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:54.654 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:31:54.654 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:54.654 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:54.654 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:31:54.654 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:31:54.654 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:31:54.654 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:31:54.654 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:31:54.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:31:54.664 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:54.664 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:31:54.664 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:31:54.664 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:31:54.664 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:31:54.664 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:31:54.674 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:31:54.674 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:31:54.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37341 150\n [Camera]
17-03-18 04:31:54.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:31:55.294 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:31:55.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:31:55.294 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:55.294 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:31:55.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:31:55.304 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:55.304 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:55.304 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:31:55.304 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:55.304 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:31:55.484 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37341 807
17-03-18 04:31:55.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:31:55.694 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:31:55.704 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:31:55.704 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:55.704 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:55.704 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:31:55.704 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:31:55.704 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:31:55.704 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:55.714 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:55.714 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:31:55.844 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:31:55.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:31:55.844 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:55.844 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:55.844 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:31:55.844 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:31:55.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:31:55.844 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:55.844 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:55.844 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:31:56.034 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:31:56.034 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:31:56.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37341 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-18 04:31:56.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:31:56.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.17013669295835. ------
17-03-18 04:31:56.034 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:56.034 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17621 mm
17-03-18 04:31:56.034 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:31:56.164 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:31:56.164 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:31:56.164 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:56.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:31:56.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:31:56.244 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:56.244 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:31:56.244 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:31:56.244 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:56.254 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:56.254 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:31:56.254 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:31:56.254 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:31:56.264 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:56.264 -07 000000480 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:31:56.264 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 227 ms overall
17-03-18 04:31:56.264 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38492, sync = True, waitForSettling = False)
17-03-18 04:31:56.264 -07 000000487 INF: Z Motor: Moving to -0.176205 mm, started at -0.170137 mm, distance = -6.07 um
17-03-18 04:31:56.264 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 96 ms to get response, and 105 ms overall
17-03-18 04:31:56.264 -07 000000382 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:56.264 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:31:56.264 -07 000000382 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:31:56.284 -07 000000487 INF: FPGA: Xmit ZDACW 38492\n [Z Motor]
17-03-18 04:31:56.284 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:31:56.294 -07 000000487 INF: FPGA: 'ZDACW 38492' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:31:56.294 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:31:56.304 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:31:56.324 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:56.324 -07 000000502 INF: FPGA: Recv ZDACR 38492
17-03-18 04:31:56.334 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:31:56.334 -07 000000487 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 04:31:56.494 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:31:56.494 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 226 ms overall
17-03-18 04:31:56.674 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:31:56.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:31:56.674 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:31:56.674 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 411 ms overall
17-03-18 04:31:56.724 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:56.724 -07 000000467 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:31:56.734 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:31:56.734 -07 000000382 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:56.734 -07 000000382 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:31:56.734 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 411 ms, distance = 0.839 mm, average velocity = 2.041 mm/sec
17-03-18 04:31:56.774 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.996267,
17-03-18 04:31:57.684 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:31:57.684 -07 000000467 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:31:57.694 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.694 -07 000000382 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:31:57.714 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:31:57.714 -07 000000382 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:31:57.714 -07 000000382 INF: Y Motor: Moved to 64.0566 after 1557 ms (table move)
17-03-18 04:31:57.724 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176205 mm (DAC = 38492)
17-03-18 04:31:57.724 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.724 -07 000000590 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:31:57.734 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:31:57.734 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.734 -07 000000487 INF: FPGA: Recv ZSGSRD 36722
17-03-18 04:31:57.744 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.744 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.744 -07 000000480 INF: FPGA: Recv ZSGSRD 36717
17-03-18 04:31:57.754 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.754 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.754 -07 000000012 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:31:57.764 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.764 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.764 -07 000000581 INF: FPGA: Recv ZSGSRD 36721
17-03-18 04:31:57.774 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.774 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.774 -07 000000502 INF: FPGA: Recv ZSGSRD 36716
17-03-18 04:31:57.784 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.784 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.784 -07 000000590 INF: FPGA: Recv ZSGSRD 36713
17-03-18 04:31:57.794 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.794 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.794 -07 000000569 INF: FPGA: Recv ZSGSRD 36715
17-03-18 04:31:57.804 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.804 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.804 -07 000000512 INF: FPGA: Recv ZSGSRD 36720
17-03-18 04:31:57.814 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.814 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:57.814 -07 000000502 INF: FPGA: Recv ZSGSRD 36721
17-03-18 04:31:57.824 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.824 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:57.824 -07 000000590 INF: FPGA: Recv ZPIEZORD 32842
17-03-18 04:31:57.834 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:57.834 -07 000000447 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.6 V.
17-03-18 04:31:57.834 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36720 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36720 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36713 (-175.3 uncal um), Max = 36725 (-175.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:31:57.834 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36720, posNoise = 5, negNoise = 7
17-03-18 04:31:57.834 -07 000000447 INF: Z Motor: After move to -0.176205, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:57.834 -07 000000447 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:31:57.834 -07 000000447 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:31:57.884 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1841 ms
17-03-18 04:31:57.884 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:31:57.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:57.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:57.884 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:57.884 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:57.884 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:31:57.884 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:57.884 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:57.884 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:31:57.894 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:31:57.894 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:31:57.894 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:31:57.894 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:31:57.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:31:57.944 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:31:58.244 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:31:58.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:31:58.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:31:58.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:31:58.284 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:31:58.284 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:31:58.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:31:58.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:31:58.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:58.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:31:58.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:31:58.384 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:31:58.384 -07 000000569 INF: Autofocus start
17-03-18 04:31:58.384 -07 000000569 INF: MeasureProfile start
17-03-18 04:31:58.384 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:31:58.394 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:31:58.394 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:31:58.404 -07 000000569 INF: MeasureProfile done
17-03-18 04:31:58.404 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:31:58.404 -07 000000569 INF: Autofocus finished
17-03-18 04:31:58.594 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:31:58.594 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:31:58.594 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176220421856597. ----------
17-03-18 04:31:58.594 -07 000000610 INF: Cycle	126	Tile	6	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:31:58.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37007, sync = True, waitForSettling = True)
17-03-18 04:31:58.604 -07 000000610 INF: Z Motor: Moving to -0.169407 mm, started at -0.176220 mm, distance = 6.81 um
17-03-18 04:31:58.604 -07 000000610 INF: FPGA: Xmit ZDACW 37007\n [Z Motor]
17-03-18 04:31:58.604 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:31:58.614 -07 000000610 INF: FPGA: 'ZDACW 37007' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:31:58.614 -07 000000606 INF: FPGA: Recv ZDACR 37007
17-03-18 04:31:58.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:31:58.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.774 -07 000000447 INF: FPGA: Recv ZSGSRD 35667
17-03-18 04:31:58.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:31:58.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.784 -07 000000480 INF: FPGA: Recv ZSGSRD 35663
17-03-18 04:31:58.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.794 -07 000000569 INF: FPGA: Recv ZSGSRD 35657
17-03-18 04:31:58.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.804 -07 000000487 INF: FPGA: Recv ZSGSRD 35659
17-03-18 04:31:58.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.814 -07 000000502 INF: FPGA: Recv ZSGSRD 35655
17-03-18 04:31:58.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.824 -07 000000424 INF: FPGA: Recv ZSGSRD 35664
17-03-18 04:31:58.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.834 -07 000000462 INF: FPGA: Recv ZSGSRD 35659
17-03-18 04:31:58.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.844 -07 000000581 INF: FPGA: Recv ZSGSRD 35657
17-03-18 04:31:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.854 -07 000000382 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:31:58.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:31:58.864 -07 000000618 INF: FPGA: Recv ZSGSRD 35659
17-03-18 04:31:58.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:31:58.874 -07 000000618 INF: FPGA: Recv ZPIEZORD 31409
17-03-18 04:31:58.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:31:58.884 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.4 V.
17-03-18 04:31:58.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35660 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35659 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35655 (-168.5 uncal um), Max = 35667 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:31:58.884 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35660, posNoise = 7, negNoise = 5
17-03-18 04:31:58.884 -07 000000610 INF: Z Motor: After move to -0.169407, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:31:58.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:31:58.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:31:58.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:31:58.884 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:31:58.884 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:31:58.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:31:58.894 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:31:58.894 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:31:58.894 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:31:58.894 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:31:58.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:31:58.894 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:31:58.894 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:31:58.894 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:31:58.894 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:31:58.894 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:31:58.894 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:31:58.904 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:31:58.904 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:31:58.904 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:31:58.904 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:31:58.904 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37184 150\n [Camera]
17-03-18 04:31:59.114 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:31:59.534 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:31:59.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:31:59.534 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:31:59.534 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:31:59.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:31:59.534 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:31:59.534 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:31:59.534 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:31:59.544 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:31:59.544 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:31:59.724 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37184 807
17-03-18 04:31:59.874 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:31:59.934 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:31:59.934 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:31:59.934 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:59.934 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:59.934 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:31:59.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:31:59.934 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:31:59.934 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:31:59.944 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:31:59.954 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:32:00.084 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:00.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:00.084 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:00.084 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:00.084 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:32:00.084 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:00.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:00.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:00.084 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:00.084 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:32:00.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:00.274 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:00.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37184 150' command took 2 ms to send, 1352 ms to get response, and 1363 ms overall
17-03-18 04:32:00.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:00.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169410756986331. ------
17-03-18 04:32:00.274 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:00.274 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17582 mm
17-03-18 04:32:00.274 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:00.484 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:32:00.494 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:32:00.494 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:00.494 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 04:32:00.494 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:32:00.494 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:00.494 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:00.494 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:00.494 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:32:00.504 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:32:00.504 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:32:00.504 -07 000000012 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:32:00.504 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:00.514 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:00.514 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 233 ms overall
17-03-18 04:32:00.514 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:00.514 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38409, sync = True, waitForSettling = False)
17-03-18 04:32:00.514 -07 000000581 INF: Z Motor: Moving to -0.175825 mm, started at -0.169411 mm, distance = -6.41 um
17-03-18 04:32:00.524 -07 000000581 INF: FPGA: Xmit ZDACW 38409\n [Z Motor]
17-03-18 04:32:01.324 -07 000000461 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:32:01.324 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:32:01.324 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:01.324 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 810 ms to get response, and 811 ms overall
17-03-18 04:32:01.324 -07 000000012 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:01.324 -07 000000012 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:01.324 -07 000000012 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:32:01.324 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:01.324 -07 000000581 INF: FPGA: 'ZDACW 38409' command took 0 ms to send, 790 ms to get response, and 808 ms overall
17-03-18 04:32:01.324 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 800 ms to get response, and 809 ms overall
17-03-18 04:32:01.334 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:01.334 -07 000000461 INF: FPGA: Recv ZDACR 38409
17-03-18 04:32:01.344 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:32:01.344 -07 000000581 INF: Z Motor: MoveAbsStepped took 827 ms (did NOT wait for settling yet))
17-03-18 04:32:01.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:01.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:01.694 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:32:01.694 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 04:32:01.744 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:01.754 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:32:01.754 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:32:01.754 -07 000000012 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:01.754 -07 000000012 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:32:01.754 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.836 mm, average velocity = 2.212 mm/sec
17-03-18 04:32:02.134 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.003063,
17-03-18 04:32:02.704 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:02.704 -07 000000462 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:32:02.714 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:02.714 -07 000000012 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:02.744 -07 000000012 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:02.744 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:02.744 -07 000000012 INF: Y Motor: Moved to 64.8784 after 2233 ms (table move)
17-03-18 04:32:02.744 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175825 mm (DAC = 38409)
17-03-18 04:32:02.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.744 -07 000000462 INF: FPGA: Recv ZSGSRD 36663
17-03-18 04:32:02.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:02.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36666
17-03-18 04:32:02.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.764 -07 000000462 INF: FPGA: Recv ZSGSRD 36658
17-03-18 04:32:02.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.774 -07 000000618 INF: FPGA: Recv ZSGSRD 36659
17-03-18 04:32:02.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.784 -07 000000581 INF: FPGA: Recv ZSGSRD 36661
17-03-18 04:32:02.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.794 -07 000000480 INF: FPGA: Recv ZSGSRD 36657
17-03-18 04:32:02.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.804 -07 000000461 INF: FPGA: Recv ZSGSRD 36657
17-03-18 04:32:02.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.814 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.814 -07 000000502 INF: FPGA: Recv ZSGSRD 36660
17-03-18 04:32:02.824 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.824 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.824 -07 000000461 INF: FPGA: Recv ZSGSRD 36667
17-03-18 04:32:02.834 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.834 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:02.834 -07 000000502 INF: FPGA: Recv ZSGSRD 36655
17-03-18 04:32:02.844 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.844 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:02.844 -07 000000618 INF: FPGA: Recv ZPIEZORD 32747
17-03-18 04:32:02.854 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:02.854 -07 000000382 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.7 V.
17-03-18 04:32:02.854 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36660 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36655 (-174.9 uncal um), Max = 36667 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:32:02.854 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36660, posNoise = 7, negNoise = 5
17-03-18 04:32:02.854 -07 000000382 INF: Z Motor: After move to -0.175825, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:02.854 -07 000000382 INF: Z Motor: Settle wait time = 2233 ms, measure time = 105 ms (allowed 150 ms), total time = 2338 ms
17-03-18 04:32:02.854 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:02.904 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2622 ms
17-03-18 04:32:02.904 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:02.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:02.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:02.904 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:02.904 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:02.904 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:02.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:02.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:02.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:02.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:02.914 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:02.914 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:02.914 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:32:02.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:02.964 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:03.264 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:03.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:03.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:03.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:32:03.304 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:03.304 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:03.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 04:32:03.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:32:03.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:03.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:32:03.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:32:03.504 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:03.504 -07 000000382 INF: Autofocus start
17-03-18 04:32:03.504 -07 000000382 INF: MeasureProfile start
17-03-18 04:32:03.504 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:03.514 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:03.514 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:03.514 -07 000000382 INF: MeasureProfile done
17-03-18 04:32:03.514 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:32:03.514 -07 000000382 INF: Autofocus finished
17-03-18 04:32:03.714 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:03.714 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:32:03.714 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175834969128092. ----------
17-03-18 04:32:03.714 -07 000000610 INF: Cycle	126	Tile	7	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:03.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36906, sync = True, waitForSettling = True)
17-03-18 04:32:03.724 -07 000000610 INF: Z Motor: Moving to -0.168945 mm, started at -0.175835 mm, distance = 6.89 um
17-03-18 04:32:03.724 -07 000000610 INF: FPGA: Xmit ZDACW 36906\n [Z Motor]
17-03-18 04:32:03.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:32:03.734 -07 000000610 INF: FPGA: 'ZDACW 36906' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:03.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:03.734 -07 000000590 INF: FPGA: Recv ZDACR 36906
17-03-18 04:32:03.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:03.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.894 -07 000000590 INF: FPGA: Recv ZSGSRD 35583
17-03-18 04:32:03.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.904 -07 000000590 INF: FPGA: Recv ZSGSRD 35588
17-03-18 04:32:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.914 -07 000000590 INF: FPGA: Recv ZSGSRD 35584
17-03-18 04:32:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.924 -07 000000590 INF: FPGA: Recv ZSGSRD 35592
17-03-18 04:32:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.934 -07 000000590 INF: FPGA: Recv ZSGSRD 35587
17-03-18 04:32:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.944 -07 000000590 INF: FPGA: Recv ZSGSRD 35593
17-03-18 04:32:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.954 -07 000000590 INF: FPGA: Recv ZSGSRD 35589
17-03-18 04:32:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.964 -07 000000590 INF: FPGA: Recv ZSGSRD 35588
17-03-18 04:32:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.974 -07 000000590 INF: FPGA: Recv ZSGSRD 35591
17-03-18 04:32:03.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:03.984 -07 000000590 INF: FPGA: Recv ZSGSRD 35587
17-03-18 04:32:03.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:03.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:03.994 -07 000000590 INF: FPGA: Recv ZPIEZORD 31300
17-03-18 04:32:04.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:04.004 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.4 V.
17-03-18 04:32:04.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35588 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35588 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35583 (-168.0 uncal um), Max = 35593 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:32:04.004 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35588, posNoise = 5, negNoise = 5
17-03-18 04:32:04.004 -07 000000610 INF: Z Motor: After move to -0.168945, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:04.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:32:04.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:04.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:04.004 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:04.004 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:04.004 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:04.004 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:04.004 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:04.004 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:04.004 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:32:04.004 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:04.004 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:04.004 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:04.014 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:04.014 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:04.014 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:32:04.014 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:04.024 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:32:04.024 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:32:04.024 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:32:04.024 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:32:04.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37083 150\n [Camera]
17-03-18 04:32:04.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:04.654 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:04.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:04.654 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:04.654 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:04.654 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:32:04.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:04.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:04.654 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:04.654 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:04.654 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:32:04.844 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37083 807
17-03-18 04:32:04.994 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:05.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:32:05.054 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:32:05.054 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:05.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:32:05.054 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:32:05.054 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:05.054 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:05.054 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:32:05.064 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:05.064 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:32:05.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:05.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:05.194 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:05.194 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:05.194 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:32:05.204 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:05.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:05.204 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:05.204 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:05.204 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:32:05.384 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:05.394 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:05.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37083 150' command took 2 ms to send, 1349 ms to get response, and 1359 ms overall
17-03-18 04:32:05.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:05.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.168948213712124. ------
17-03-18 04:32:05.514 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:05.514 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17551 mm
17-03-18 04:32:05.514 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:05.524 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:32:05.524 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:32:05.524 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:05.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:32:05.604 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:32:05.604 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:05.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:32:05.604 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:32:05.604 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:05.604 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:05.614 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:05.614 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:32:05.614 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:32:05.624 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:05.624 -07 000000467 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:32:05.624 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 96 ms to get response, and 104 ms overall
17-03-18 04:32:05.624 -07 000000480 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:05.624 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:05.624 -07 000000480 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:32:05.624 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 106 ms to get response, and 108 ms overall
17-03-18 04:32:05.624 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:05.624 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38340, sync = True, waitForSettling = False)
17-03-18 04:32:05.624 -07 000000467 INF: Z Motor: Moving to -0.175509 mm, started at -0.168948 mm, distance = -6.56 um
17-03-18 04:32:05.634 -07 000000467 INF: FPGA: Xmit ZDACW 38340\n [Z Motor]
17-03-18 04:32:05.634 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:32:05.644 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:05.644 -07 000000467 INF: FPGA: 'ZDACW 38340' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:32:05.654 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:05.654 -07 000000590 INF: FPGA: Recv ZDACR 38340
17-03-18 04:32:05.664 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:05.664 -07 000000467 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 04:32:05.844 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:05.844 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 214 ms overall
17-03-18 04:32:06.004 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:32:06.004 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-18 04:32:06.054 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:06.064 -07 000000590 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:32:06.064 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:32:06.064 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:06.064 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:32:06.064 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.233 mm/sec
17-03-18 04:32:06.674 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:06.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:07.034 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:07.034 -07 000000590 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:32:07.044 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:32:07.044 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:07.074 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:07.074 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:07.074 -07 000000480 INF: Y Motor: Moved to 65.7134 after 1556 ms (table move)
17-03-18 04:32:07.084 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175509 mm (DAC = 38340)
17-03-18 04:32:07.084 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.084 -07 000000467 INF: FPGA: Recv ZSGSRD 36610
17-03-18 04:32:07.094 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:32:07.094 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36608
17-03-18 04:32:07.104 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.104 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.104 -07 000000467 INF: FPGA: Recv ZSGSRD 36612
17-03-18 04:32:07.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.114 -07 000000480 INF: FPGA: Recv ZSGSRD 36614
17-03-18 04:32:07.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.124 -07 000000590 INF: FPGA: Recv ZSGSRD 36607
17-03-18 04:32:07.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.134 -07 000000626 INF: FPGA: Recv ZSGSRD 36608
17-03-18 04:32:07.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.144 -07 000000590 INF: FPGA: Recv ZSGSRD 36610
17-03-18 04:32:07.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.154 -07 000000480 INF: FPGA: Recv ZSGSRD 36608
17-03-18 04:32:07.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.164 -07 000000606 INF: FPGA: Recv ZSGSRD 36613
17-03-18 04:32:07.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:07.184 -07 000000626 INF: FPGA: Recv ZSGSRD 36615
17-03-18 04:32:07.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:07.194 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:07.194 -07 000000461 INF: FPGA: Recv ZPIEZORD 32714
17-03-18 04:32:07.204 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:07.204 -07 000000462 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.6 V.
17-03-18 04:32:07.204 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36610 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36610 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36607 (-174.6 uncal um), Max = 36615 (-174.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:32:07.204 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36610, posNoise = 5, negNoise = 3
17-03-18 04:32:07.204 -07 000000462 INF: Z Motor: After move to -0.175509, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:07.204 -07 000000462 INF: Z Motor: Settle wait time = 1453 ms, measure time = 118 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:32:07.204 -07 000000462 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:07.244 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-18 04:32:07.244 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:07.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:07.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:07.244 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:07.244 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:07.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:07.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:32:07.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:07.244 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:07.254 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:07.254 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:07.254 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:32:07.254 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:32:07.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:07.304 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:07.494 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.978563,
17-03-18 04:32:07.604 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:07.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:07.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:07.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:07.644 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:07.644 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:07.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:32:07.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:32:07.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:07.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:32:07.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:32:07.844 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:07.844 -07 000000480 INF: Autofocus start
17-03-18 04:32:07.844 -07 000000480 INF: MeasureProfile start
17-03-18 04:32:07.844 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:07.854 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:07.854 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:07.854 -07 000000480 INF: MeasureProfile done
17-03-18 04:32:07.854 -07 000000480 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:32:07.854 -07 000000480 INF: Autofocus finished
17-03-18 04:32:08.054 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:08.054 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:08.054 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175513758521004. ----------
17-03-18 04:32:08.054 -07 000000610 INF: Cycle	126	Tile	8	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:08.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36890, sync = True, waitForSettling = True)
17-03-18 04:32:08.064 -07 000000610 INF: Z Motor: Moving to -0.168872 mm, started at -0.175514 mm, distance = 6.64 um
17-03-18 04:32:08.064 -07 000000610 INF: FPGA: Xmit ZDACW 36890\n [Z Motor]
17-03-18 04:32:08.064 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:32:08.074 -07 000000610 INF: FPGA: 'ZDACW 36890' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:08.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:08.074 -07 000000626 INF: FPGA: Recv ZDACR 36890
17-03-18 04:32:08.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.234 -07 000000461 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:32:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.244 -07 000000447 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:32:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:32:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.264 -07 000000626 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:32:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.274 -07 000000606 INF: FPGA: Recv ZSGSRD 35581
17-03-18 04:32:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.284 -07 000000447 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:32:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.294 -07 000000461 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:32:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.304 -07 000000606 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:32:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35578
17-03-18 04:32:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:08.324 -07 000000569 INF: FPGA: Recv ZSGSRD 35578
17-03-18 04:32:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:08.334 -07 000000626 INF: FPGA: Recv ZPIEZORD 31294
17-03-18 04:32:08.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:08.344 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.4 V.
17-03-18 04:32:08.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35578 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35578 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35574 (-168.0 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:32:08.344 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35578, posNoise = 3, negNoise = 4
17-03-18 04:32:08.344 -07 000000610 INF: Z Motor: After move to -0.168872, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:08.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:32:08.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:08.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:08.344 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:08.344 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:08.344 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:08.344 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:08.344 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:08.344 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:08.344 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:08.344 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:08.344 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:32:08.344 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:08.354 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:08.354 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:08.354 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:32:08.354 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:08.364 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:32:08.364 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:32:08.364 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:32:08.364 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:32:08.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37067 150\n [Camera]
17-03-18 04:32:08.574 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:08.994 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:08.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:08.994 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:08.994 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:08.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:08.994 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:08.994 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:08.994 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:09.004 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:09.004 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:32:09.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37067 807
17-03-18 04:32:09.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:09.374 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:32:09.374 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:32:09.374 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:09.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:32:09.384 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:32:09.384 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:09.384 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:32:09.384 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:09.384 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:32:09.394 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:32:09.534 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:09.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:09.534 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:09.534 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:09.534 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:32:09.544 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:09.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:09.544 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:09.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:09.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:32:09.724 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:09.724 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:09.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37067 150' command took 2 ms to send, 1349 ms to get response, and 1359 ms overall
17-03-18 04:32:09.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:09.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168883971590706. ------
17-03-18 04:32:09.734 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:09.734 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17539 mm
17-03-18 04:32:09.734 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:09.734 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:32:09.734 -07 000000447 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:32:09.854 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:09.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:32:09.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:32:09.944 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:09.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:32:09.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:32:09.944 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:09.954 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:09.954 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:09.954 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:32:09.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:32:09.964 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38314, sync = True, waitForSettling = False)
17-03-18 04:32:09.964 -07 000000480 INF: Z Motor: Moving to -0.175390 mm, started at -0.168884 mm, distance = -6.51 um
17-03-18 04:32:09.964 -07 000000480 INF: FPGA: Xmit ZDACW 38314\n [Z Motor]
17-03-18 04:32:09.964 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:09.964 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:32:09.964 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 109 ms to get response, and 232 ms overall
17-03-18 04:32:09.964 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 106 ms to get response, and 109 ms overall
17-03-18 04:32:09.964 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:32:09.964 -07 000000447 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:09.964 -07 000000447 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:09.964 -07 000000447 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:32:09.974 -07 000000480 INF: FPGA: 'ZDACW 38314' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:09.974 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:09.984 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:09.994 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:09.994 -07 000000606 INF: FPGA: Recv ZDACR 38314
17-03-18 04:32:10.004 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:32:10.004 -07 000000480 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:32:10.184 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:10.184 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-18 04:32:10.344 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:32:10.344 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 04:32:10.394 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:10.404 -07 000000467 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:32:10.404 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:32:10.404 -07 000000447 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:10.404 -07 000000447 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:32:10.404 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.839 mm, average velocity = 2.208 mm/sec
17-03-18 04:32:11.354 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:11.354 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:32:11.364 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.364 -07 000000447 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:11.394 -07 000000447 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:11.394 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:32:11.394 -07 000000447 INF: Y Motor: Moved to 66.5386 after 1654 ms (table move)
17-03-18 04:32:11.394 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175390 mm (DAC = 38314)
17-03-18 04:32:11.394 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.394 -07 000000480 INF: FPGA: Recv ZSGSRD 36588
17-03-18 04:32:11.404 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:11.404 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.404 -07 000000467 INF: FPGA: Recv ZSGSRD 36599
17-03-18 04:32:11.414 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.414 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.414 -07 000000480 INF: FPGA: Recv ZSGSRD 36602
17-03-18 04:32:11.424 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.424 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36591
17-03-18 04:32:11.434 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.434 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.434 -07 000000467 INF: FPGA: Recv ZSGSRD 36599
17-03-18 04:32:11.444 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:11.444 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.444 -07 000000467 INF: FPGA: Recv ZSGSRD 36593
17-03-18 04:32:11.454 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:11.454 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.454 -07 000000467 INF: FPGA: Recv ZSGSRD 36592
17-03-18 04:32:11.464 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.464 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.464 -07 000000480 INF: FPGA: Recv ZSGSRD 36588
17-03-18 04:32:11.474 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.474 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.474 -07 000000606 INF: FPGA: Recv ZSGSRD 36586
17-03-18 04:32:11.484 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.484 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:11.484 -07 000000467 INF: FPGA: Recv ZSGSRD 36594
17-03-18 04:32:11.494 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.494 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:11.494 -07 000000467 INF: FPGA: Recv ZPIEZORD 32675
17-03-18 04:32:11.504 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:11.504 -07 000000569 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.7 V.
17-03-18 04:32:11.504 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36593 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36592 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36586 (-174.5 uncal um), Max = 36602 (-174.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:32:11.504 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36593, posNoise = 9, negNoise = 7
17-03-18 04:32:11.504 -07 000000569 INF: Z Motor: After move to -0.175390, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:11.504 -07 000000569 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-18 04:32:11.504 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:11.554 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1815 ms
17-03-18 04:32:11.554 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:11.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:11.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:11.554 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:11.554 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:11.554 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:11.554 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:11.554 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:11.554 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:11.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:11.564 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:11.564 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:11.564 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:32:11.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:11.614 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:11.674 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:11.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:11.914 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:11.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:11.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:11.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:11.954 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:11.954 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:11.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:32:12.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:32:12.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:12.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:32:12.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:32:12.054 -07 000000455 INF: Autofocus start
17-03-18 04:32:12.054 -07 000000455 INF: MeasureProfile start
17-03-18 04:32:12.054 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:12.054 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:12.064 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:12.064 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:12.064 -07 000000455 INF: MeasureProfile done
17-03-18 04:32:12.064 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:32:12.064 -07 000000455 INF: Autofocus finished
17-03-18 04:32:12.264 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:12.264 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:12.264 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175404546914594. ----------
17-03-18 04:32:12.264 -07 000000610 INF: Cycle	126	Tile	9	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:12.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36811, sync = True, waitForSettling = True)
17-03-18 04:32:12.274 -07 000000610 INF: Z Motor: Moving to -0.168510 mm, started at -0.175405 mm, distance = 6.89 um
17-03-18 04:32:12.274 -07 000000610 INF: FPGA: Xmit ZDACW 36811\n [Z Motor]
17-03-18 04:32:12.274 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:32:12.284 -07 000000610 INF: FPGA: 'ZDACW 36811' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:12.284 -07 000000512 INF: FPGA: Recv ZDACR 36811
17-03-18 04:32:12.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:12.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35528
17-03-18 04:32:12.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:12.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.454 -07 000000012 INF: FPGA: Recv ZSGSRD 35514
17-03-18 04:32:12.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.464 -07 000000480 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:32:12.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.474 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:32:12.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35527
17-03-18 04:32:12.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.494 -07 000000012 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:32:12.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.504 -07 000000012 INF: FPGA: Recv ZSGSRD 35523
17-03-18 04:32:12.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.514 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:32:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.524 -07 000000512 INF: FPGA: Recv ZSGSRD 35526
17-03-18 04:32:12.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:12.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35525
17-03-18 04:32:12.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:12.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:12.554 -07 000000618 INF: FPGA: Recv ZPIEZORD 31200
17-03-18 04:32:12.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:12.564 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.5 V.
17-03-18 04:32:12.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35523 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35514 (-167.6 uncal um), Max = 35528 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:32:12.564 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35523, posNoise = 5, negNoise = 9
17-03-18 04:32:12.564 -07 000000610 INF: Z Motor: After move to -0.168510, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:12.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 04:32:12.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:12.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:12.564 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:12.564 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:12.564 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:12.564 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:12.564 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:12.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:12.564 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:12.564 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:12.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:32:12.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:12.564 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:12.564 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:12.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:32:12.564 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:12.584 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:32:12.584 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:32:12.584 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:32:12.584 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:32:12.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36988 150\n [Camera]
17-03-18 04:32:12.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:12.854 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.003063,
17-03-18 04:32:13.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:13.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:13.224 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:13.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:13.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:13.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:13.224 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:13.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:32:13.224 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:13.224 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:13.414 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36988 807
17-03-18 04:32:13.564 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:13.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:32:13.624 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:32:13.624 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:13.624 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:13.624 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:32:13.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:32:13.624 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:32:13.624 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:13.624 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:13.634 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:32:13.764 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:13.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:13.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:13.764 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:13.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:32:13.764 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:13.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:13.764 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:13.764 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:13.764 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:32:13.954 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:13.954 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:13.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36988 150' command took 2 ms to send, 1347 ms to get response, and 1360 ms overall
17-03-18 04:32:13.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:13.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168530639922909. ------
17-03-18 04:32:13.964 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:13.964 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17537 mm
17-03-18 04:32:13.964 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:13.964 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:32:13.964 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 04:32:13.964 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38310, sync = True, waitForSettling = False)
17-03-18 04:32:13.964 -07 000000012 INF: Z Motor: Moving to -0.175372 mm, started at -0.168531 mm, distance = -6.84 um
17-03-18 04:32:13.964 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:13.974 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:13.974 -07 000000012 INF: FPGA: Xmit ZDACW 38310\n [Z Motor]
17-03-18 04:32:13.974 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:32:13.984 -07 000000012 INF: FPGA: 'ZDACW 38310' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:32:13.984 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:13.984 -07 000000569 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:32:13.994 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:32:13.994 -07 000000512 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:13.994 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:13.994 -07 000000512 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:32:13.994 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:14.004 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:14.004 -07 000000480 INF: FPGA: Recv ZDACR 38310
17-03-18 04:32:14.014 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:14.014 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:32:14.014 -07 000000012 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:32:14.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:32:14.174 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:32:14.174 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:14.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:32:14.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:32:14.174 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:14.174 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:14.174 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:14.174 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:32:14.184 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:32:14.194 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:14.194 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:32:14.384 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:32:14.384 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:32:14.434 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:14.444 -07 000000618 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:32:14.444 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:14.444 -07 000000512 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:14.444 -07 000000512 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:32:14.444 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 04:32:15.394 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:15.394 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:32:15.404 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:15.404 -07 000000512 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:15.434 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:15.434 -07 000000512 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:15.434 -07 000000512 INF: Y Motor: Moved to 67.3711 after 1463 ms (table move)
17-03-18 04:32:15.434 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175372 mm (DAC = 38310)
17-03-18 04:32:15.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.434 -07 000000618 INF: FPGA: Recv ZSGSRD 36596
17-03-18 04:32:15.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:15.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.444 -07 000000467 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:32:15.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.454 -07 000000382 INF: FPGA: Recv ZSGSRD 36588
17-03-18 04:32:15.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.464 -07 000000382 INF: FPGA: Recv ZSGSRD 36597
17-03-18 04:32:15.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.474 -07 000000467 INF: FPGA: Recv ZSGSRD 36591
17-03-18 04:32:15.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.484 -07 000000382 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:32:15.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.494 -07 000000382 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:32:15.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.504 -07 000000512 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:32:15.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.514 -07 000000618 INF: FPGA: Recv ZSGSRD 36593
17-03-18 04:32:15.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:15.524 -07 000000467 INF: FPGA: Recv ZSGSRD 36588
17-03-18 04:32:15.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.534 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:15.534 -07 000000512 INF: FPGA: Recv ZPIEZORD 32653
17-03-18 04:32:15.544 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:15.544 -07 000000606 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.7 V.
17-03-18 04:32:15.544 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36590 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36588 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36587 (-174.5 uncal um), Max = 36597 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:32:15.544 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36590, posNoise = 7, negNoise = 3
17-03-18 04:32:15.544 -07 000000606 INF: Z Motor: After move to -0.175372, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:15.544 -07 000000606 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:32:15.544 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:15.594 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:32:15.594 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:15.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:15.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:15.594 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:15.594 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:15.594 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:15.594 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:15.594 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:15.594 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:15.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:15.604 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:15.614 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:32:15.614 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:32:15.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:15.664 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:15.964 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:15.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:15.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:15.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:32:16.004 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:16.004 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:16.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 04:32:16.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:32:16.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:16.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:32:16.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:32:16.104 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:16.104 -07 000000512 INF: Autofocus start
17-03-18 04:32:16.104 -07 000000512 INF: MeasureProfile start
17-03-18 04:32:16.104 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:16.114 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:16.114 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:16.114 -07 000000512 INF: MeasureProfile done
17-03-18 04:32:16.114 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:32:16.114 -07 000000512 INF: Autofocus finished
17-03-18 04:32:16.314 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:16.314 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:16.314 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175385274278168. ----------
17-03-18 04:32:16.314 -07 000000610 INF: Cycle	126	Tile	10	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:16.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36807, sync = True, waitForSettling = True)
17-03-18 04:32:16.324 -07 000000610 INF: Z Motor: Moving to -0.168492 mm, started at -0.175385 mm, distance = 6.89 um
17-03-18 04:32:16.324 -07 000000610 INF: FPGA: Xmit ZDACW 36807\n [Z Motor]
17-03-18 04:32:16.324 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:32:16.334 -07 000000610 INF: FPGA: 'ZDACW 36807' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:16.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:16.334 -07 000000606 INF: FPGA: Recv ZDACR 36807
17-03-18 04:32:16.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:16.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.494 -07 000000618 INF: FPGA: Recv ZSGSRD 35519
17-03-18 04:32:16.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:16.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35523
17-03-18 04:32:16.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:32:16.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.524 -07 000000606 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:32:16.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.534 -07 000000382 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:32:16.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35519
17-03-18 04:32:16.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.554 -07 000000606 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:32:16.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:32:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.574 -07 000000382 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:32:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:16.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:32:16.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:16.594 -07 000000382 INF: FPGA: Recv ZPIEZORD 31242
17-03-18 04:32:16.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:16.604 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.4 V.
17-03-18 04:32:16.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35519 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35519 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35517 (-167.6 uncal um), Max = 35523 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:32:16.604 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35519, posNoise = 4, negNoise = 2
17-03-18 04:32:16.604 -07 000000610 INF: Z Motor: After move to -0.168492, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:16.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:32:16.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:16.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:16.604 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:16.604 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:16.604 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:16.604 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:16.604 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:16.604 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:16.604 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:16.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:16.604 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:16.604 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:16.614 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:32:16.614 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:16.614 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:16.614 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:16.614 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:32:16.614 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:32:16.614 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:32:16.614 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:16.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36984 150\n [Camera]
17-03-18 04:32:16.674 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:16.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:16.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:32:17.244 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:17.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:17.244 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:17.244 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:17.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:32:17.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:17.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:17.244 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:17.244 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:17.244 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:32:17.444 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36984 807
17-03-18 04:32:17.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:17.624 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:32:17.624 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:32:17.624 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:17.624 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:32:17.624 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:32:17.624 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:17.634 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:17.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:32:17.634 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:17.644 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:32:17.794 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:17.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:17.794 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:17.794 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:17.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:32:17.794 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:17.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:17.794 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:17.794 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:17.794 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:32:17.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:32:17.984 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:18.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36984 150' command took 2 ms to send, 1477 ms to get response, and 1484 ms overall
17-03-18 04:32:18.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:18.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168504943074342. ------
17-03-18 04:32:18.114 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:18.114 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17483 mm
17-03-18 04:32:18.114 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:18.114 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38193, sync = True, waitForSettling = False)
17-03-18 04:32:18.114 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:32:18.114 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:32:18.114 -07 000000606 INF: Z Motor: Moving to -0.174836 mm, started at -0.168505 mm, distance = -6.33 um
17-03-18 04:32:18.114 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:18.124 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:18.124 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:18.134 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:18.134 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:32:18.144 -07 000000606 INF: FPGA: Xmit ZDACW 38193\n [Z Motor]
17-03-18 04:32:18.144 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:32:18.144 -07 000000590 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:18.144 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:32:18.144 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:18.144 -07 000000590 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:32:18.154 -07 000000606 INF: FPGA: 'ZDACW 38193' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:32:18.154 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:18.164 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:18.164 -07 000000424 INF: FPGA: Recv ZDACR 38193
17-03-18 04:32:18.174 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:32:18.174 -07 000000606 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:32:18.194 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:32:18.194 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:32:18.194 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:18.194 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:32:18.194 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:32:18.194 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:18.204 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:18.204 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:18.204 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:32:18.214 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.996267,
17-03-18 04:32:18.214 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:32:18.324 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:18.324 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:18.524 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:32:18.524 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:32:18.574 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:18.574 -07 000000618 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:32:18.584 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:18.584 -07 000000590 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:18.584 -07 000000590 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:32:18.584 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.842 mm, average velocity = 2.191 mm/sec
17-03-18 04:32:19.534 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:19.534 -07 000000606 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:32:19.544 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:19.544 -07 000000590 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:19.574 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:19.574 -07 000000590 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:19.574 -07 000000590 INF: Y Motor: Moved to 68.2041 after 1453 ms (table move)
17-03-18 04:32:19.574 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174836 mm (DAC = 38193)
17-03-18 04:32:19.574 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.574 -07 000000461 INF: FPGA: Recv ZSGSRD 36512
17-03-18 04:32:19.584 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:19.584 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.584 -07 000000461 INF: FPGA: Recv ZSGSRD 36510
17-03-18 04:32:19.594 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.594 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.594 -07 000000461 INF: FPGA: Recv ZSGSRD 36509
17-03-18 04:32:19.604 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.604 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.604 -07 000000467 INF: FPGA: Recv ZSGSRD 36499
17-03-18 04:32:19.614 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.614 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.614 -07 000000461 INF: FPGA: Recv ZSGSRD 36504
17-03-18 04:32:19.624 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.624 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.624 -07 000000467 INF: FPGA: Recv ZSGSRD 36511
17-03-18 04:32:19.634 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.634 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.634 -07 000000461 INF: FPGA: Recv ZSGSRD 36503
17-03-18 04:32:19.644 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.644 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.644 -07 000000487 INF: FPGA: Recv ZSGSRD 36506
17-03-18 04:32:19.654 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.654 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.654 -07 000000618 INF: FPGA: Recv ZSGSRD 36512
17-03-18 04:32:19.664 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.664 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:19.664 -07 000000461 INF: FPGA: Recv ZSGSRD 36513
17-03-18 04:32:19.674 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.674 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:19.674 -07 000000618 INF: FPGA: Recv ZPIEZORD 32539
17-03-18 04:32:19.684 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:19.684 -07 000000382 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.8 V.
17-03-18 04:32:19.684 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36508 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36510 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36499 (-173.9 uncal um), Max = 36513 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:32:19.684 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36508, posNoise = 5, negNoise = 9
17-03-18 04:32:19.684 -07 000000382 INF: Z Motor: After move to -0.174836, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:19.684 -07 000000382 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:32:19.684 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:19.734 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:32:19.734 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:19.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:19.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:19.734 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:19.734 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:19.734 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:19.734 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:19.734 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:19.734 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:19.744 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:19.744 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:19.744 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:19.744 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:32:19.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:19.804 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:20.104 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:20.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:20.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:20.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:20.144 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:20.144 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:20.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 04:32:20.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:32:20.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:20.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:32:20.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:32:20.244 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:20.244 -07 000000487 INF: Autofocus start
17-03-18 04:32:20.244 -07 000000487 INF: MeasureProfile start
17-03-18 04:32:20.244 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:20.254 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:20.254 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:20.254 -07 000000487 INF: MeasureProfile done
17-03-18 04:32:20.254 -07 000000487 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:32:20.254 -07 000000487 INF: Autofocus finished
17-03-18 04:32:20.454 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:20.454 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:20.454 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174858488882544. ----------
17-03-18 04:32:20.454 -07 000000610 INF: Cycle	126	Tile	11	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:20.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36690, sync = True, waitForSettling = True)
17-03-18 04:32:20.464 -07 000000610 INF: Z Motor: Moving to -0.167956 mm, started at -0.174858 mm, distance = 6.90 um
17-03-18 04:32:20.464 -07 000000610 INF: FPGA: Xmit ZDACW 36690\n [Z Motor]
17-03-18 04:32:20.464 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:32:20.474 -07 000000610 INF: FPGA: 'ZDACW 36690' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:20.474 -07 000000382 INF: FPGA: Recv ZDACR 36690
17-03-18 04:32:20.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:20.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.634 -07 000000487 INF: FPGA: Recv ZSGSRD 35438
17-03-18 04:32:20.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.644 -07 000000467 INF: FPGA: Recv ZSGSRD 35437
17-03-18 04:32:20.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.654 -07 000000382 INF: FPGA: Recv ZSGSRD 35438
17-03-18 04:32:20.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.664 -07 000000467 INF: FPGA: Recv ZSGSRD 35434
17-03-18 04:32:20.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.674 -07 000000382 INF: FPGA: Recv ZSGSRD 35431
17-03-18 04:32:20.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35437
17-03-18 04:32:20.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.694 -07 000000487 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:32:20.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.704 -07 000000382 INF: FPGA: Recv ZSGSRD 35435
17-03-18 04:32:20.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.714 -07 000000618 INF: FPGA: Recv ZSGSRD 35435
17-03-18 04:32:20.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:20.724 -07 000000487 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:32:20.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:20.734 -07 000000467 INF: FPGA: Recv ZPIEZORD 31124
17-03-18 04:32:20.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:20.744 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.5 V.
17-03-18 04:32:20.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35436 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35437 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35431 (-167.1 uncal um), Max = 35440 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:32:20.744 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35436, posNoise = 4, negNoise = 5
17-03-18 04:32:20.744 -07 000000610 INF: Z Motor: After move to -0.167956, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:20.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:32:20.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:20.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:20.744 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:20.744 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:20.744 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:20.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:20.744 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:20.744 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:20.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:20.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:20.744 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:32:20.744 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:20.754 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:20.754 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:20.754 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 04:32:20.754 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:20.764 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:32:20.764 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:32:20.764 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:32:20.764 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:32:20.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36866 150\n [Camera]
17-03-18 04:32:20.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:21.394 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:21.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:21.394 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:21.394 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:21.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:21.394 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:21.394 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:21.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:21.404 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:21.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:32:21.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36866 807
17-03-18 04:32:21.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:21.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:21.734 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:21.794 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:32:21.794 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:32:21.794 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:21.794 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:21.794 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:32:21.794 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:32:21.794 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:32:21.794 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:21.804 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:21.804 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:32:21.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:21.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:21.934 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:21.944 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:21.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:32:21.944 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:21.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:21.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:21.944 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:21.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:32:22.124 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:22.134 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:22.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36866 150' command took 2 ms to send, 1350 ms to get response, and 1362 ms overall
17-03-18 04:32:22.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:22.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.167971733466576. ------
17-03-18 04:32:22.134 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:22.134 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17456 mm
17-03-18 04:32:22.134 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:22.134 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:32:22.134 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38133, sync = True, waitForSettling = False)
17-03-18 04:32:22.134 -07 000000487 INF: Z Motor: Moving to -0.174562 mm, started at -0.167972 mm, distance = -6.59 um
17-03-18 04:32:22.134 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:22.134 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 04:32:22.144 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:22.144 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:22.144 -07 000000467 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:32:22.154 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:22.154 -07 000000569 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:22.154 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:22.274 -07 000000487 INF: FPGA: Xmit ZDACW 38133\n [Z Motor]
17-03-18 04:32:22.284 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:32:22.284 -07 000000487 INF: FPGA: 'ZDACW 38133' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-18 04:32:22.284 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:22.284 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:22.284 -07 000000569 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:32:22.284 -07 000000455 INF: FPGA: Recv ZDACR 38133
17-03-18 04:32:22.294 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:22.294 -07 000000487 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 04:32:22.294 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:22.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:32:22.344 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:32:22.344 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:22.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:32:22.344 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:32:22.344 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:22.344 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:22.354 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:32:22.354 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:32:22.354 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:32:22.354 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:22.354 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 75 ms to get response, and 212 ms overall
17-03-18 04:32:22.664 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 04:32:22.664 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:32:22.714 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:22.724 -07 000000487 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:32:22.724 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:22.724 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:22.724 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:32:22.724 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.178 mm/sec
17-03-18 04:32:23.574 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.026244,
17-03-18 04:32:23.674 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:23.674 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:32:23.684 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.684 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:23.714 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:23.714 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:23.714 -07 000000569 INF: Y Motor: Moved to 69.0264 after 1572 ms (table move)
17-03-18 04:32:23.714 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174562 mm (DAC = 38133)
17-03-18 04:32:23.714 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.714 -07 000000447 INF: FPGA: Recv ZSGSRD 36472
17-03-18 04:32:23.724 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:23.724 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.724 -07 000000569 INF: FPGA: Recv ZSGSRD 36452
17-03-18 04:32:23.734 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.734 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.734 -07 000000618 INF: FPGA: Recv ZSGSRD 36459
17-03-18 04:32:23.744 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.744 -07 000000467 INF: FPGA: Recv ZSGSRD 36468
17-03-18 04:32:23.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.754 -07 000000012 INF: FPGA: Recv ZSGSRD 36457
17-03-18 04:32:23.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.764 -07 000000618 INF: FPGA: Recv ZSGSRD 36459
17-03-18 04:32:23.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.774 -07 000000487 INF: FPGA: Recv ZSGSRD 36463
17-03-18 04:32:23.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.784 -07 000000447 INF: FPGA: Recv ZSGSRD 36460
17-03-18 04:32:23.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.794 -07 000000569 INF: FPGA: Recv ZSGSRD 36468
17-03-18 04:32:23.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:23.804 -07 000000618 INF: FPGA: Recv ZSGSRD 36466
17-03-18 04:32:23.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:23.814 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:23.814 -07 000000447 INF: FPGA: Recv ZPIEZORD 32496
17-03-18 04:32:23.824 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:23.824 -07 000000382 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.8 V.
17-03-18 04:32:23.824 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36462 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36462 (-173.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36452 (-173.6 uncal um), Max = 36472 (-173.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:32:23.824 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36462, posNoise = 10, negNoise = 10
17-03-18 04:32:23.824 -07 000000382 INF: Z Motor: After move to -0.174562, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:23.824 -07 000000382 INF: Z Motor: Settle wait time = 1576 ms, measure time = 106 ms (allowed 150 ms), total time = 1682 ms
17-03-18 04:32:23.824 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:23.874 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 04:32:23.874 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:23.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:23.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:23.874 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:23.874 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:23.874 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:23.874 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:23.884 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:23.884 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:23.884 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:23.884 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:23.884 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:23.884 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:32:23.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:23.934 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:24.234 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:24.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:24.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:24.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:24.274 -07 000000487 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:32:24.274 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:24.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 04:32:24.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:32:24.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:24.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:32:24.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:32:24.374 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:24.374 -07 000000581 INF: Autofocus start
17-03-18 04:32:24.374 -07 000000581 INF: MeasureProfile start
17-03-18 04:32:24.374 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:24.384 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:24.384 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:24.384 -07 000000581 INF: MeasureProfile done
17-03-18 04:32:24.384 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:32:24.384 -07 000000581 INF: Autofocus finished
17-03-18 04:32:24.584 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:24.584 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:24.594 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174562975124023. ----------
17-03-18 04:32:24.594 -07 000000610 INF: Cycle	126	Tile	12	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:24.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36648, sync = True, waitForSettling = True)
17-03-18 04:32:24.594 -07 000000610 INF: Z Motor: Moving to -0.167764 mm, started at -0.174563 mm, distance = 6.80 um
17-03-18 04:32:24.594 -07 000000610 INF: FPGA: Xmit ZDACW 36648\n [Z Motor]
17-03-18 04:32:24.594 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:32:24.604 -07 000000610 INF: FPGA: 'ZDACW 36648' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:24.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:24.604 -07 000000487 INF: FPGA: Recv ZDACR 36648
17-03-18 04:32:24.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:24.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.764 -07 000000487 INF: FPGA: Recv ZSGSRD 35407
17-03-18 04:32:24.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:24.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.774 -07 000000581 INF: FPGA: Recv ZSGSRD 35404
17-03-18 04:32:24.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.784 -07 000000581 INF: FPGA: Recv ZSGSRD 35399
17-03-18 04:32:24.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.794 -07 000000487 INF: FPGA: Recv ZSGSRD 35408
17-03-18 04:32:24.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.804 -07 000000487 INF: FPGA: Recv ZSGSRD 35400
17-03-18 04:32:24.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.814 -07 000000461 INF: FPGA: Recv ZSGSRD 35411
17-03-18 04:32:24.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.824 -07 000000467 INF: FPGA: Recv ZSGSRD 35401
17-03-18 04:32:24.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.834 -07 000000461 INF: FPGA: Recv ZSGSRD 35406
17-03-18 04:32:24.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.844 -07 000000569 INF: FPGA: Recv ZSGSRD 35408
17-03-18 04:32:24.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:24.854 -07 000000581 INF: FPGA: Recv ZSGSRD 35404
17-03-18 04:32:24.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:24.864 -07 000000569 INF: FPGA: Recv ZPIEZORD 31074
17-03-18 04:32:24.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:24.874 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.5 V.
17-03-18 04:32:24.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35405 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35405 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35399 (-166.9 uncal um), Max = 35411 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:32:24.874 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35405, posNoise = 6, negNoise = 6
17-03-18 04:32:24.874 -07 000000610 INF: Z Motor: After move to -0.167764, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:24.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:32:24.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:24.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:24.874 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:24.874 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:24.874 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:24.874 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:24.874 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:24.874 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:24.874 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:24.874 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:24.874 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:24.874 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:24.884 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:24.884 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:24.884 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:24.884 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:24.894 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:32:24.894 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:32:24.894 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:32:24.894 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:24.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36824 150\n [Camera]
17-03-18 04:32:25.094 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:25.514 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:25.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:25.514 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:25.514 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:25.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:25.514 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:25.514 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:25.514 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:32:25.524 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:25.524 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:25.704 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36824 807
17-03-18 04:32:25.854 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:25.904 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:32:25.904 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:32:25.904 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:25.904 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:32:25.904 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:32:25.904 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:25.904 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:25.904 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:32:25.904 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:25.914 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:32:26.064 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:26.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:26.064 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:26.064 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:26.064 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:32:26.064 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:26.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:26.064 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:26.064 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:26.064 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:32:26.254 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:26.254 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:26.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36824 150' command took 2 ms to send, 1352 ms to get response, and 1360 ms overall
17-03-18 04:32:26.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:26.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167772582890182. ------
17-03-18 04:32:26.254 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:26.254 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17420 mm
17-03-18 04:32:26.254 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:26.264 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:26.264 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:26.264 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:26.264 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:32:26.264 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:32:26.264 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38055, sync = True, waitForSettling = False)
17-03-18 04:32:26.264 -07 000000487 INF: Z Motor: Moving to -0.174205 mm, started at -0.167773 mm, distance = -6.43 um
17-03-18 04:32:26.274 -07 000000487 INF: FPGA: Xmit ZDACW 38055\n [Z Motor]
17-03-18 04:32:26.274 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:32:26.284 -07 000000487 INF: FPGA: 'ZDACW 38055' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:32:26.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:26.284 -07 000000590 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:32:26.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:32:26.294 -07 000000461 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:26.294 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:26.294 -07 000000462 INF: FPGA: Recv ZDACR 38055
17-03-18 04:32:26.294 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:26.294 -07 000000461 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:32:26.304 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:26.304 -07 000000487 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:32:26.304 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:26.464 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:32:26.464 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:32:26.464 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:26.464 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:26.464 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:32:26.464 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:32:26.464 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:32:26.464 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:26.464 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:26.474 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:32:26.474 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:32:26.474 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:32:26.674 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:26.674 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:32:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:26.684 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-18 04:32:26.724 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:26.734 -07 000000626 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:32:26.734 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:26.734 -07 000000461 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:26.734 -07 000000461 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:32:26.734 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.846 mm, average velocity = 2.192 mm/sec
17-03-18 04:32:27.684 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:27.684 -07 000000480 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:32:27.694 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:27.694 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:27.724 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:27.724 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:32:27.724 -07 000000461 INF: Y Motor: Moved to 69.8628 after 1457 ms (table move)
17-03-18 04:32:27.724 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174205 mm (DAC = 38055)
17-03-18 04:32:27.724 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.724 -07 000000012 INF: FPGA: Recv ZSGSRD 36408
17-03-18 04:32:27.734 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:27.734 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.734 -07 000000487 INF: FPGA: Recv ZSGSRD 36410
17-03-18 04:32:27.744 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.744 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.744 -07 000000461 INF: FPGA: Recv ZSGSRD 36408
17-03-18 04:32:27.754 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.754 -07 000000626 INF: FPGA: Recv ZSGSRD 36405
17-03-18 04:32:27.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.764 -07 000000512 INF: FPGA: Recv ZSGSRD 36408
17-03-18 04:32:27.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.774 -07 000000461 INF: FPGA: Recv ZSGSRD 36398
17-03-18 04:32:27.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.784 -07 000000569 INF: FPGA: Recv ZSGSRD 36406
17-03-18 04:32:27.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.794 -07 000000512 INF: FPGA: Recv ZSGSRD 36408
17-03-18 04:32:27.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36406
17-03-18 04:32:27.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:27.814 -07 000000512 INF: FPGA: Recv ZSGSRD 36416
17-03-18 04:32:27.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.824 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:27.824 -07 000000569 INF: FPGA: Recv ZPIEZORD 32432
17-03-18 04:32:27.834 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:27.834 -07 000000467 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.8 V.
17-03-18 04:32:27.834 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36407 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36408 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36398 (-173.3 uncal um), Max = 36416 (-173.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:32:27.834 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36407, posNoise = 9, negNoise = 9
17-03-18 04:32:27.834 -07 000000467 INF: Z Motor: After move to -0.174205, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:27.834 -07 000000467 INF: Z Motor: Settle wait time = 1462 ms, measure time = 104 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:32:27.834 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:27.884 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:32:27.884 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:27.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:27.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:27.894 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:27.894 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:27.894 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:27.894 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:27.894 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:27.894 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:27.894 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:27.894 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:27.904 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:32:27.904 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:32:27.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:27.944 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:28.244 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:28.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:28.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:28.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:32:28.284 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:28.284 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:28.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:32:28.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:32:28.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:28.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:32:28.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:32:28.384 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:28.384 -07 000000512 INF: Autofocus start
17-03-18 04:32:28.384 -07 000000512 INF: MeasureProfile start
17-03-18 04:32:28.384 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:28.394 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:28.394 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:28.394 -07 000000512 INF: MeasureProfile done
17-03-18 04:32:28.394 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:32:28.394 -07 000000512 INF: Autofocus finished
17-03-18 04:32:28.594 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:28.594 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:28.594 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174209643456226. ----------
17-03-18 04:32:28.594 -07 000000610 INF: Cycle	126	Tile	13	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:28.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36569, sync = True, waitForSettling = True)
17-03-18 04:32:28.604 -07 000000610 INF: Z Motor: Moving to -0.167402 mm, started at -0.174210 mm, distance = 6.81 um
17-03-18 04:32:28.604 -07 000000610 INF: FPGA: Xmit ZDACW 36569\n [Z Motor]
17-03-18 04:32:28.604 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:32:28.614 -07 000000610 INF: FPGA: 'ZDACW 36569' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:28.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:28.624 -07 000000569 INF: FPGA: Recv ZDACR 36569
17-03-18 04:32:28.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:28.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:28.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.784 -07 000000502 INF: FPGA: Recv ZSGSRD 35346
17-03-18 04:32:28.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.794 -07 000000424 INF: FPGA: Recv ZSGSRD 35345
17-03-18 04:32:28.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:28.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.804 -07 000000461 INF: FPGA: Recv ZSGSRD 35349
17-03-18 04:32:28.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.814 -07 000000569 INF: FPGA: Recv ZSGSRD 35350
17-03-18 04:32:28.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.824 -07 000000590 INF: FPGA: Recv ZSGSRD 35345
17-03-18 04:32:28.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.834 -07 000000581 INF: FPGA: Recv ZSGSRD 35347
17-03-18 04:32:28.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35347
17-03-18 04:32:28.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.854 -07 000000461 INF: FPGA: Recv ZSGSRD 35350
17-03-18 04:32:28.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.864 -07 000000512 INF: FPGA: Recv ZSGSRD 35343
17-03-18 04:32:28.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:28.874 -07 000000461 INF: FPGA: Recv ZSGSRD 35353
17-03-18 04:32:28.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:28.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:28.884 -07 000000626 INF: FPGA: Recv ZPIEZORD 31052
17-03-18 04:32:28.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:28.894 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.5 V.
17-03-18 04:32:28.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35347 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35343 (-166.5 uncal um), Max = 35353 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:32:28.894 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 5, negNoise = 5
17-03-18 04:32:28.894 -07 000000610 INF: Z Motor: After move to -0.167402, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:28.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 04:32:28.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:28.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:28.894 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:28.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:28.894 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:28.894 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:28.894 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:28.894 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:28.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:28.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:28.894 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:28.894 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:28.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:28.894 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:32:28.894 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:28.894 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:28.904 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:32:28.904 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:32:28.904 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:32:28.904 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:28.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36746 150\n [Camera]
17-03-18 04:32:28.934 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.993549,
17-03-18 04:32:29.114 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:29.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:29.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:29.534 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:29.534 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:29.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 04:32:29.534 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:29.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:29.534 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:29.544 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:29.544 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:32:29.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36746 807
17-03-18 04:32:29.874 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:32:29.914 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:32:29.914 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:32:29.914 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:29.924 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:29.924 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:32:29.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:32:29.934 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:32:29.934 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:29.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:29.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:32:30.084 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:30.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:30.084 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:30.084 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:30.084 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:32:30.084 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:30.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:30.084 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:30.084 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:30.084 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:32:30.274 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:32:30.274 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:30.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36746 150' command took 2 ms to send, 1354 ms to get response, and 1360 ms overall
17-03-18 04:32:30.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:30.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167406402798101. ------
17-03-18 04:32:30.404 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17372 mm
17-03-18 04:32:30.404 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:30.404 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:30.404 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:32:30.404 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:32:30.414 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:30.484 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:32:30.484 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:32:30.484 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:30.484 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:32:30.484 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:32:30.484 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:30.494 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:30.494 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:32:30.494 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:32:30.494 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:32:30.504 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37949, sync = True, waitForSettling = False)
17-03-18 04:32:30.504 -07 000000012 INF: Z Motor: Moving to -0.173719 mm, started at -0.167406 mm, distance = -6.31 um
17-03-18 04:32:30.504 -07 000000012 INF: FPGA: Xmit ZDACW 37949\n [Z Motor]
17-03-18 04:32:30.504 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:30.504 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:32:30.504 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 89 ms to get response, and 101 ms overall
17-03-18 04:32:30.504 -07 000000512 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:30.504 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:30.504 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:32:30.504 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 98 ms to get response, and 104 ms overall
17-03-18 04:32:30.514 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:30.514 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:32:30.514 -07 000000012 INF: FPGA: 'ZDACW 37949' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:32:30.524 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:30.534 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:30.534 -07 000000455 INF: FPGA: Recv ZDACR 37949
17-03-18 04:32:30.544 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:32:30.544 -07 000000012 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 04:32:30.724 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:30.724 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 216 ms overall
17-03-18 04:32:30.884 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:32:30.884 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 04:32:30.934 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:30.934 -07 000000012 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:32:30.944 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:30.944 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:30.944 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:32:30.944 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec
17-03-18 04:32:31.684 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:31.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:31.894 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:31.894 -07 000000455 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:32:31.904 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:31.904 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:31.934 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:31.934 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:32:31.934 -07 000000512 INF: Y Motor: Moved to 70.6880 after 1524 ms (table move)
17-03-18 04:32:31.934 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173719 mm (DAC = 37949)
17-03-18 04:32:31.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.934 -07 000000618 INF: FPGA: Recv ZSGSRD 36337
17-03-18 04:32:31.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:31.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.944 -07 000000512 INF: FPGA: Recv ZSGSRD 36336
17-03-18 04:32:31.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:31.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.954 -07 000000455 INF: FPGA: Recv ZSGSRD 36332
17-03-18 04:32:31.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:31.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.964 -07 000000382 INF: FPGA: Recv ZSGSRD 36331
17-03-18 04:32:31.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:31.974 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.974 -07 000000012 INF: FPGA: Recv ZSGSRD 36333
17-03-18 04:32:31.984 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:31.984 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.984 -07 000000455 INF: FPGA: Recv ZSGSRD 36332
17-03-18 04:32:31.994 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:31.994 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:31.994 -07 000000480 INF: FPGA: Recv ZSGSRD 36326
17-03-18 04:32:32.004 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.004 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:32.004 -07 000000455 INF: FPGA: Recv ZSGSRD 36328
17-03-18 04:32:32.014 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.014 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:32.014 -07 000000480 INF: FPGA: Recv ZSGSRD 36334
17-03-18 04:32:32.024 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.024 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:32.024 -07 000000606 INF: FPGA: Recv ZSGSRD 36335
17-03-18 04:32:32.034 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.034 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:32.034 -07 000000480 INF: FPGA: Recv ZPIEZORD 32366
17-03-18 04:32:32.044 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.044 -07 000000461 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.8 V.
17-03-18 04:32:32.044 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36332 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36332 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36326 (-172.8 uncal um), Max = 36337 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:32:32.044 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36332, posNoise = 5, negNoise = 6
17-03-18 04:32:32.044 -07 000000461 INF: Z Motor: After move to -0.173719, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:32.044 -07 000000461 INF: Z Motor: Settle wait time = 1426 ms, measure time = 106 ms (allowed 150 ms), total time = 1532 ms
17-03-18 04:32:32.044 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:32.094 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1685 ms
17-03-18 04:32:32.094 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:32.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:32.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:32.094 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:32.094 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:32.094 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:32.094 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:32.094 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:32.094 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:32.094 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:32.094 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:32.104 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:32.104 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:32:32.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:32.154 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:32.454 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:32.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:32.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:32.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:32.494 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:32.494 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:32.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:32:32.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:32:32.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:32.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:32:32.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:32:32.594 -07 000000382 INF: Autofocus start
17-03-18 04:32:32.594 -07 000000382 INF: MeasureProfile start
17-03-18 04:32:32.594 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:32.594 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:32.604 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:32.604 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:32.604 -07 000000382 INF: MeasureProfile done
17-03-18 04:32:32.604 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:32:32.604 -07 000000382 INF: Autofocus finished
17-03-18 04:32:32.804 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:32.804 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:32.804 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173727827545594. ----------
17-03-18 04:32:32.804 -07 000000610 INF: Cycle	126	Tile	14	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:32.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36482, sync = True, waitForSettling = True)
17-03-18 04:32:32.814 -07 000000610 INF: Z Motor: Moving to -0.167004 mm, started at -0.173728 mm, distance = 6.72 um
17-03-18 04:32:32.814 -07 000000610 INF: FPGA: Xmit ZDACW 36482\n [Z Motor]
17-03-18 04:32:32.814 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:32:32.824 -07 000000610 INF: FPGA: 'ZDACW 36482' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:32.824 -07 000000512 INF: FPGA: Recv ZDACR 36482
17-03-18 04:32:32.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:32.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:32.984 -07 000000512 INF: FPGA: Recv ZSGSRD 35282
17-03-18 04:32:32.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:32.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:32.994 -07 000000512 INF: FPGA: Recv ZSGSRD 35292
17-03-18 04:32:33.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.004 -07 000000447 INF: FPGA: Recv ZSGSRD 35296
17-03-18 04:32:33.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.014 -07 000000447 INF: FPGA: Recv ZSGSRD 35278
17-03-18 04:32:33.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.024 -07 000000447 INF: FPGA: Recv ZSGSRD 35285
17-03-18 04:32:33.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.034 -07 000000447 INF: FPGA: Recv ZSGSRD 35287
17-03-18 04:32:33.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.044 -07 000000480 INF: FPGA: Recv ZSGSRD 35285
17-03-18 04:32:33.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.054 -07 000000447 INF: FPGA: Recv ZSGSRD 35290
17-03-18 04:32:33.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.064 -07 000000480 INF: FPGA: Recv ZSGSRD 35283
17-03-18 04:32:33.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:33.074 -07 000000447 INF: FPGA: Recv ZSGSRD 35290
17-03-18 04:32:33.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:33.084 -07 000000480 INF: FPGA: Recv ZPIEZORD 30961
17-03-18 04:32:33.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:33.094 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 04:32:33.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35287 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35286 (-166.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35278 (-166.1 uncal um), Max = 35296 (-166.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:32:33.094 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35287, posNoise = 9, negNoise = 9
17-03-18 04:32:33.094 -07 000000610 INF: Z Motor: After move to -0.167004, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:33.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:32:33.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:33.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:33.094 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:33.094 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:33.094 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:33.094 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:33.094 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:33.094 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:33.094 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:33.094 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:33.094 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:33.094 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:33.104 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:32:33.104 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:33.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:33.104 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:33.114 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:32:33.114 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:32:33.114 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:32:33.114 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:32:33.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36659 150\n [Camera]
17-03-18 04:32:33.324 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:33.744 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:33.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:33.744 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:33.744 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:33.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:33.744 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:33.744 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:33.744 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:33.754 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:33.754 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:32:33.934 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36659 807
17-03-18 04:32:34.084 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:34.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:32:34.134 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:32:34.134 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:34.144 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:32:34.144 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:32:34.144 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:34.144 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:34.144 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:32:34.144 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:34.154 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:32:34.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:34.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:34.294 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.005817,
17-03-18 04:32:34.294 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:34.294 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:34.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:32:34.294 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:34.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:34.294 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:34.294 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:34.294 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:32:34.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:32:34.484 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:34.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36659 150' command took 2 ms to send, 1351 ms to get response, and 1363 ms overall
17-03-18 04:32:34.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:34.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167014525857454. ------
17-03-18 04:32:34.484 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:34.484 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17368 mm
17-03-18 04:32:34.484 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:34.494 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:32:34.494 -07 000000447 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:32:34.494 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:34.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 04:32:34.694 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:32:34.694 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:34.694 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 04:32:34.694 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:32:34.704 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:34.704 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:34.704 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:34.704 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:32:34.714 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:32:34.834 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:34.834 -07 000000461 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:32:34.834 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 346 ms to get response, and 347 ms overall
17-03-18 04:32:34.834 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 336 ms to get response, and 345 ms overall
17-03-18 04:32:34.834 -07 000000447 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:34.834 -07 000000447 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:34.834 -07 000000447 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:32:34.834 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:34.834 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37941, sync = True, waitForSettling = False)
17-03-18 04:32:34.834 -07 000000512 INF: Z Motor: Moving to -0.173683 mm, started at -0.167015 mm, distance = -6.67 um
17-03-18 04:32:34.844 -07 000000512 INF: FPGA: Xmit ZDACW 37941\n [Z Motor]
17-03-18 04:32:34.844 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:32:34.854 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:34.854 -07 000000512 INF: FPGA: 'ZDACW 37941' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:32:34.864 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:34.864 -07 000000461 INF: FPGA: Recv ZDACR 37941
17-03-18 04:32:34.874 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:34.874 -07 000000512 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 04:32:35.044 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:35.044 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 200 ms to get response, and 203 ms overall
17-03-18 04:32:35.224 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:32:35.224 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:32:35.274 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:35.284 -07 000000461 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:32:35.284 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:35.284 -07 000000447 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:35.284 -07 000000447 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:32:35.284 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 04:32:36.234 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:36.234 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:32:36.244 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:36.244 -07 000000447 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:36.274 -07 000000447 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:36.274 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:32:36.274 -07 000000447 INF: Y Motor: Moved to 71.5186 after 1780 ms (table move)
17-03-18 04:32:36.274 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173683 mm (DAC = 37941)
17-03-18 04:32:36.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.284 -07 000000461 INF: FPGA: Recv ZSGSRD 36323
17-03-18 04:32:36.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:36.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.284 -07 000000461 INF: FPGA: Recv ZSGSRD 36325
17-03-18 04:32:36.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.294 -07 000000480 INF: FPGA: Recv ZSGSRD 36336
17-03-18 04:32:36.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.304 -07 000000480 INF: FPGA: Recv ZSGSRD 36331
17-03-18 04:32:36.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.314 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.314 -07 000000447 INF: FPGA: Recv ZSGSRD 36329
17-03-18 04:32:36.324 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.324 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.324 -07 000000447 INF: FPGA: Recv ZSGSRD 36330
17-03-18 04:32:36.334 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:36.334 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.344 -07 000000480 INF: FPGA: Recv ZSGSRD 36331
17-03-18 04:32:36.344 -07 000000606 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 1 ms to get response, and 7 ms overall
17-03-18 04:32:36.344 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.344 -07 000000447 INF: FPGA: Recv ZSGSRD 36326
17-03-18 04:32:36.354 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:36.354 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.354 -07 000000461 INF: FPGA: Recv ZSGSRD 36325
17-03-18 04:32:36.364 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.364 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:36.364 -07 000000447 INF: FPGA: Recv ZSGSRD 36329
17-03-18 04:32:36.374 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.374 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:36.374 -07 000000502 INF: FPGA: Recv ZPIEZORD 32366
17-03-18 04:32:36.384 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:36.384 -07 000000606 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.8 V.
17-03-18 04:32:36.384 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36328 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36329 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36323 (-172.8 uncal um), Max = 36336 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:32:36.384 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36328, posNoise = 8, negNoise = 5
17-03-18 04:32:36.384 -07 000000606 INF: Z Motor: After move to -0.173683, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:36.384 -07 000000606 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-18 04:32:36.384 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:36.434 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1941 ms
17-03-18 04:32:36.434 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:36.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:36.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:36.434 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:36.434 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:36.434 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:36.434 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:36.434 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:36.434 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:36.444 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:32:36.444 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:36.454 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:36.454 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:32:36.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:36.494 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:36.684 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:36.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:36.794 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:36.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:36.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:36.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:36.834 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:36.834 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:36.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:32:36.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 04:32:36.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:36.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:36.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 04:32:37.034 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:37.034 -07 000000447 INF: Autofocus start
17-03-18 04:32:37.034 -07 000000447 INF: MeasureProfile start
17-03-18 04:32:37.034 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:37.044 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:37.044 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:37.044 -07 000000447 INF: MeasureProfile done
17-03-18 04:32:37.044 -07 000000447 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:32:37.044 -07 000000447 INF: Autofocus finished
17-03-18 04:32:37.244 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:37.244 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:37.244 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173702130697027. ----------
17-03-18 04:32:37.244 -07 000000610 INF: Cycle	126	Tile	15	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:37.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36456, sync = True, waitForSettling = True)
17-03-18 04:32:37.254 -07 000000610 INF: Z Motor: Moving to -0.166885 mm, started at -0.173702 mm, distance = 6.82 um
17-03-18 04:32:37.254 -07 000000610 INF: FPGA: Xmit ZDACW 36456\n [Z Motor]
17-03-18 04:32:37.254 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:32:37.264 -07 000000610 INF: FPGA: 'ZDACW 36456' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:37.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:37.264 -07 000000467 INF: FPGA: Recv ZDACR 36456
17-03-18 04:32:37.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:37.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.424 -07 000000467 INF: FPGA: Recv ZSGSRD 35277
17-03-18 04:32:37.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:37.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.434 -07 000000467 INF: FPGA: Recv ZSGSRD 35273
17-03-18 04:32:37.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.444 -07 000000467 INF: FPGA: Recv ZSGSRD 35263
17-03-18 04:32:37.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.454 -07 000000467 INF: FPGA: Recv ZSGSRD 35264
17-03-18 04:32:37.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.464 -07 000000467 INF: FPGA: Recv ZSGSRD 35270
17-03-18 04:32:37.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.474 -07 000000467 INF: FPGA: Recv ZSGSRD 35269
17-03-18 04:32:37.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.484 -07 000000467 INF: FPGA: Recv ZSGSRD 35269
17-03-18 04:32:37.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.494 -07 000000467 INF: FPGA: Recv ZSGSRD 35271
17-03-18 04:32:37.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.504 -07 000000480 INF: FPGA: Recv ZSGSRD 35267
17-03-18 04:32:37.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:37.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35262
17-03-18 04:32:37.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:37.524 -07 000000512 INF: FPGA: Recv ZPIEZORD 30928
17-03-18 04:32:37.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:37.534 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.6 V.
17-03-18 04:32:37.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35268 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35269 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35262 (-166.0 uncal um), Max = 35277 (-166.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:32:37.534 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35268, posNoise = 9, negNoise = 6
17-03-18 04:32:37.534 -07 000000610 INF: Z Motor: After move to -0.166885, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:37.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:32:37.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:37.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:37.534 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:37.534 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:37.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:37.534 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:37.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:37.534 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:37.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:32:37.534 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:37.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 04:32:37.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:37.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:32:37.544 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:37.544 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:32:37.544 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:37.554 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:32:37.554 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:32:37.554 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:32:37.554 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:32:37.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36632 150\n [Camera]
17-03-18 04:32:37.754 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:38.184 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:32:38.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:32:38.184 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:38.184 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:32:38.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:32:38.184 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:38.184 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:38.184 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:38.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:38.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:32:38.374 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36632 807
17-03-18 04:32:38.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:38.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:32:38.584 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:32:38.584 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:38.584 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:38.584 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:32:38.594 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:32:38.594 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:32:38.594 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:38.594 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:38.604 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:32:38.724 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:38.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:38.724 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:38.724 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:38.724 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:32:38.734 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:38.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:38.734 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:38.734 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:38.734 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:32:38.914 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:38.914 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:38.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36632 150' command took 2 ms to send, 1347 ms to get response, and 1359 ms overall
17-03-18 04:32:38.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:38.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.16689246582676. ------
17-03-18 04:32:38.924 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:38.924 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17340 mm
17-03-18 04:32:38.924 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:38.924 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:32:38.924 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:32:38.924 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37880, sync = True, waitForSettling = False)
17-03-18 04:32:38.924 -07 000000480 INF: Z Motor: Moving to -0.173404 mm, started at -0.166892 mm, distance = -6.51 um
17-03-18 04:32:39.034 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:39.034 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:39.034 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-18 04:32:39.044 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:39.044 -07 000000581 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:32:39.044 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 115 ms overall
17-03-18 04:32:39.044 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:39.044 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:39.044 -07 000000467 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:32:39.054 -07 000000480 INF: FPGA: Xmit ZDACW 37880\n [Z Motor]
17-03-18 04:32:39.054 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:32:39.064 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:39.064 -07 000000480 INF: FPGA: 'ZDACW 37880' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-18 04:32:39.074 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:39.074 -07 000000606 INF: FPGA: Recv ZDACR 37880
17-03-18 04:32:39.084 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:39.084 -07 000000480 INF: Z Motor: MoveAbsStepped took 154 ms (did NOT wait for settling yet))
17-03-18 04:32:39.114 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:32:39.114 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:32:39.114 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:39.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:32:39.114 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:32:39.114 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:39.114 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:39.124 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:39.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:32:39.124 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:32:39.244 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:39.244 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-18 04:32:39.434 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:32:39.434 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 04:32:39.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:39.494 -07 000000512 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:32:39.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:39.494 -07 000000467 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:39.494 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:32:39.494 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.131 mm/sec
17-03-18 04:32:39.654 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.986717,
17-03-18 04:32:40.444 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:40.444 -07 000000512 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:32:40.454 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.454 -07 000000467 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:40.484 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:40.484 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:40.484 -07 000000467 INF: Y Motor: Moved to 72.3491 after 1555 ms (table move)
17-03-18 04:32:40.484 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173404 mm (DAC = 37880)
17-03-18 04:32:40.484 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.484 -07 000000512 INF: FPGA: Recv ZSGSRD 36278
17-03-18 04:32:40.494 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:40.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.494 -07 000000581 INF: FPGA: Recv ZSGSRD 36280
17-03-18 04:32:40.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.504 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36279
17-03-18 04:32:40.514 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.514 -07 000000480 INF: FPGA: Recv ZSGSRD 36287
17-03-18 04:32:40.524 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.524 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.524 -07 000000467 INF: FPGA: Recv ZSGSRD 36287
17-03-18 04:32:40.534 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.534 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.534 -07 000000512 INF: FPGA: Recv ZSGSRD 36280
17-03-18 04:32:40.544 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.544 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.544 -07 000000467 INF: FPGA: Recv ZSGSRD 36278
17-03-18 04:32:40.554 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.554 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.554 -07 000000512 INF: FPGA: Recv ZSGSRD 36282
17-03-18 04:32:40.564 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.564 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.564 -07 000000467 INF: FPGA: Recv ZSGSRD 36283
17-03-18 04:32:40.574 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.574 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:40.574 -07 000000512 INF: FPGA: Recv ZSGSRD 36287
17-03-18 04:32:40.584 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.584 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:40.584 -07 000000581 INF: FPGA: Recv ZPIEZORD 32326
17-03-18 04:32:40.594 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:40.594 -07 000000462 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.7 V.
17-03-18 04:32:40.594 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36282 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36281 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36278 (-172.5 uncal um), Max = 36287 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:32:40.594 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36282, posNoise = 5, negNoise = 4
17-03-18 04:32:40.594 -07 000000462 INF: Z Motor: After move to -0.173404, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:40.594 -07 000000462 INF: Z Motor: Settle wait time = 1559 ms, measure time = 105 ms (allowed 150 ms), total time = 1664 ms
17-03-18 04:32:40.594 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:40.644 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1717 ms
17-03-18 04:32:40.644 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:40.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:40.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:40.654 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:40.654 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:40.654 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:40.654 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:40.654 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:40.654 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:40.654 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:40.654 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:40.664 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:32:40.664 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:32:40.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:40.704 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:41.004 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:41.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:41.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:41.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:32:41.044 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:41.044 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:41.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:32:41.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 04:32:41.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:41.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:32:41.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 04:32:41.144 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:41.144 -07 000000467 INF: Autofocus start
17-03-18 04:32:41.144 -07 000000467 INF: MeasureProfile start
17-03-18 04:32:41.144 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:41.154 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:41.154 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:41.154 -07 000000467 INF: MeasureProfile done
17-03-18 04:32:41.154 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:32:41.154 -07 000000467 INF: Autofocus finished
17-03-18 04:32:41.354 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:41.354 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:41.354 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173406616938506. ----------
17-03-18 04:32:41.354 -07 000000610 INF: Cycle	126	Tile	16	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:41.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36395, sync = True, waitForSettling = True)
17-03-18 04:32:41.364 -07 000000610 INF: Z Motor: Moving to -0.166606 mm, started at -0.173407 mm, distance = 6.80 um
17-03-18 04:32:41.364 -07 000000610 INF: FPGA: Xmit ZDACW 36395\n [Z Motor]
17-03-18 04:32:41.364 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:32:41.374 -07 000000610 INF: FPGA: 'ZDACW 36395' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:32:41.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:41.374 -07 000000480 INF: FPGA: Recv ZDACR 36395
17-03-18 04:32:41.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:41.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.534 -07 000000382 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:32:41.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:41.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:32:41.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.554 -07 000000382 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:32:41.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.564 -07 000000455 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:32:41.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.574 -07 000000382 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:32:41.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:32:41.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.594 -07 000000382 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:32:41.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35232
17-03-18 04:32:41.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.614 -07 000000382 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:32:41.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:41.624 -07 000000626 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:32:41.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:41.634 -07 000000382 INF: FPGA: Recv ZPIEZORD 30918
17-03-18 04:32:41.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:41.644 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.5 V.
17-03-18 04:32:41.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35226 (-165.8 uncal um), Error = 0.8 uncal um, Median = 35225 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35223 (-165.7 uncal um), Max = 35232 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:32:41.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35226, posNoise = 6, negNoise = 3
17-03-18 04:32:41.644 -07 000000610 INF: Z Motor: After move to -0.166606, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:41.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:32:41.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:41.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:41.644 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:41.644 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:41.644 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:41.644 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:41.644 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:41.644 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:41.644 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:41.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:41.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:41.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:41.654 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:32:41.654 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:41.654 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:32:41.654 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:41.664 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:32:41.664 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:32:41.664 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:32:41.664 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:41.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36572 150\n [Camera]
17-03-18 04:32:41.684 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:41.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:41.864 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:42.284 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:42.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:42.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:42.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:42.284 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:42.284 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:42.294 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:42.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:32:42.294 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:42.294 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:32:42.474 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36572 807
17-03-18 04:32:42.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:42.694 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:32:42.694 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:32:42.694 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:42.694 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:32:42.694 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:32:42.694 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:42.694 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:42.694 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:32:42.694 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:42.704 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:32:42.834 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1162
17-03-18 04:32:42.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1162
17-03-18 04:32:42.834 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:42.834 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:42.834 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:32:42.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1162
17-03-18 04:32:42.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1162
17-03-18 04:32:42.834 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:42.834 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:42.834 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:32:43.024 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:32:43.024 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:43.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36572 150' command took 2 ms to send, 1352 ms to get response, and 1360 ms overall
17-03-18 04:32:43.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:43.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166622648916806. ------
17-03-18 04:32:43.024 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:43.024 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17305 mm
17-03-18 04:32:43.024 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:43.034 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:43.034 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:32:43.034 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:43.034 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:32:43.034 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37803, sync = True, waitForSettling = False)
17-03-18 04:32:43.034 -07 000000581 INF: Z Motor: Moving to -0.173051 mm, started at -0.166623 mm, distance = -6.43 um
17-03-18 04:32:43.034 -07 000000606 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:32:43.044 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:43.044 -07 000000626 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:32:43.054 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:32:43.054 -07 000000606 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:43.054 -07 000000606 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:43.054 -07 000000606 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:32:43.054 -07 000000581 INF: FPGA: Xmit ZDACW 37803\n [Z Motor]
17-03-18 04:32:43.054 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:32:43.064 -07 000000581 INF: FPGA: 'ZDACW 37803' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:32:43.064 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:43.064 -07 000000424 INF: FPGA: Recv ZDACR 37803
17-03-18 04:32:43.074 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:43.074 -07 000000581 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:32:43.074 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:43.234 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:43.234 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:43.234 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:32:43.234 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:32:43.234 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:43.244 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:32:43.244 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:32:43.244 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:43.244 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:43.244 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:32:43.244 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:43.254 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:32:43.444 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:32:43.444 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:32:43.494 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:43.494 -07 000000382 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:32:43.504 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:43.504 -07 000000606 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:43.504 -07 000000606 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:32:43.504 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-18 04:32:44.454 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:44.454 -07 000000480 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:32:44.464 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:44.464 -07 000000606 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:44.494 -07 000000606 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:44.494 -07 000000606 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:32:44.494 -07 000000606 INF: Y Motor: Moved to 73.1758 after 1458 ms (table move)
17-03-18 04:32:44.494 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173051 mm (DAC = 37803)
17-03-18 04:32:44.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.494 -07 000000606 INF: FPGA: Recv ZSGSRD 36233
17-03-18 04:32:44.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:44.504 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.504 -07 000000606 INF: FPGA: Recv ZSGSRD 36229
17-03-18 04:32:44.514 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.514 -07 000000606 INF: FPGA: Recv ZSGSRD 36232
17-03-18 04:32:44.524 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.524 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.524 -07 000000455 INF: FPGA: Recv ZSGSRD 36226
17-03-18 04:32:44.534 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.534 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.534 -07 000000455 INF: FPGA: Recv ZSGSRD 36230
17-03-18 04:32:44.544 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.554 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.554 -07 000000424 INF: FPGA: Recv ZSGSRD 36227
17-03-18 04:32:44.564 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:44.564 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.564 -07 000000480 INF: FPGA: Recv ZSGSRD 36226
17-03-18 04:32:44.574 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.594 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.594 -07 000000480 INF: FPGA: Recv ZSGSRD 36227
17-03-18 04:32:44.604 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:32:44.624 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.624 -07 000000012 INF: FPGA: Recv ZSGSRD 36225
17-03-18 04:32:44.634 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:32:44.634 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:44.634 -07 000000012 INF: FPGA: Recv ZSGSRD 36228
17-03-18 04:32:44.644 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.644 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:44.644 -07 000000012 INF: FPGA: Recv ZPIEZORD 32244
17-03-18 04:32:44.654 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:44.654 -07 000000462 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.8 V.
17-03-18 04:32:44.654 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36228 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36228 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36225 (-172.2 uncal um), Max = 36233 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:32:44.654 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36228, posNoise = 5, negNoise = 3
17-03-18 04:32:44.654 -07 000000462 INF: Z Motor: After move to -0.173051, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:44.654 -07 000000462 INF: Z Motor: Settle wait time = 1462 ms, measure time = 155 ms (allowed 150 ms), total time = 1617 ms
17-03-18 04:32:44.654 -07 000000462 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 04:32:44.654 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:32:44.654 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:44.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:44.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:44.654 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:44.654 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:44.654 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:44.654 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:44.664 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:44.664 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:44.664 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:44.664 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:44.674 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:32:44.674 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:32:44.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:44.714 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:45.014 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.001704,
17-03-18 04:32:45.014 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:45.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:45.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:45.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 04:32:45.054 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:45.054 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:45.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:32:45.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:32:45.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:45.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:32:45.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:32:45.154 -07 000000462 INF: Autofocus start
17-03-18 04:32:45.154 -07 000000462 INF: MeasureProfile start
17-03-18 04:32:45.154 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:45.154 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:45.164 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:45.164 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:45.164 -07 000000462 INF: MeasureProfile done
17-03-18 04:32:45.164 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:32:45.164 -07 000000462 INF: Autofocus finished
17-03-18 04:32:45.364 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:45.364 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 04:32:45.364 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173059709482851. ----------
17-03-18 04:32:45.374 -07 000000610 INF: Cycle	126	Tile	17	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:45.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36318, sync = True, waitForSettling = True)
17-03-18 04:32:45.374 -07 000000610 INF: Z Motor: Moving to -0.166253 mm, started at -0.173060 mm, distance = 6.81 um
17-03-18 04:32:45.374 -07 000000610 INF: FPGA: Xmit ZDACW 36318\n [Z Motor]
17-03-18 04:32:45.374 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:32:45.384 -07 000000610 INF: FPGA: 'ZDACW 36318' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:32:45.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:45.384 -07 000000462 INF: FPGA: Recv ZDACR 36318
17-03-18 04:32:45.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:45.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.544 -07 000000480 INF: FPGA: Recv ZSGSRD 35168
17-03-18 04:32:45.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:45.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.554 -07 000000467 INF: FPGA: Recv ZSGSRD 35169
17-03-18 04:32:45.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35163
17-03-18 04:32:45.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.574 -07 000000467 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:32:45.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.584 -07 000000467 INF: FPGA: Recv ZSGSRD 35169
17-03-18 04:32:45.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.594 -07 000000467 INF: FPGA: Recv ZSGSRD 35169
17-03-18 04:32:45.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35174
17-03-18 04:32:45.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.614 -07 000000467 INF: FPGA: Recv ZSGSRD 35170
17-03-18 04:32:45.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.624 -07 000000480 INF: FPGA: Recv ZSGSRD 35170
17-03-18 04:32:45.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:45.634 -07 000000480 INF: FPGA: Recv ZSGSRD 35166
17-03-18 04:32:45.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:45.644 -07 000000012 INF: FPGA: Recv ZPIEZORD 30839
17-03-18 04:32:45.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:45.654 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.5 V.
17-03-18 04:32:45.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35169 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35169 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35163 (-165.4 uncal um), Max = 35174 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:32:45.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35169, posNoise = 5, negNoise = 6
17-03-18 04:32:45.654 -07 000000610 INF: Z Motor: After move to -0.166253, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:45.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:32:45.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:45.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:45.654 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:45.654 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:45.654 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:45.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:45.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:45.654 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:45.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:45.654 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:45.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:45.654 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:45.664 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:45.664 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:45.664 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:32:45.664 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:45.674 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:32:45.674 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:45.674 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:32:45.674 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:32:45.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36495 150\n [Camera]
17-03-18 04:32:45.874 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:46.294 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:46.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:46.294 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:46.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:46.294 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:46.294 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:46.304 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:32:46.304 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:46.304 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:46.304 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:32:46.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36495 807
17-03-18 04:32:46.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:46.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:32:46.684 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:32:46.684 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:46.684 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:46.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:32:46.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:32:46.684 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:46.684 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:46.684 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:46.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:32:46.694 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:32:46.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:46.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:46.844 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:46.844 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:46.844 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:32:46.844 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:46.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:46.844 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:46.844 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:46.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:32:47.034 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:32:47.034 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:47.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36495 150' command took 4 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:32:47.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:47.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166256468824726. ------
17-03-18 04:32:47.034 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17221 mm
17-03-18 04:32:47.034 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:47.044 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:47.044 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:47.044 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:32:47.044 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:32:47.044 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37620, sync = True, waitForSettling = False)
17-03-18 04:32:47.044 -07 000000502 INF: Z Motor: Moving to -0.172213 mm, started at -0.166256 mm, distance = -5.96 um
17-03-18 04:32:47.054 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:47.054 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:47.054 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:32:47.064 -07 000000502 INF: FPGA: Xmit ZDACW 37620\n [Z Motor]
17-03-18 04:32:47.064 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:32:47.064 -07 000000012 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:47.064 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:47.064 -07 000000012 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:32:47.064 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:32:47.074 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:47.074 -07 000000502 INF: FPGA: 'ZDACW 37620' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:32:47.084 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:47.094 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:47.094 -07 000000447 INF: FPGA: Recv ZDACR 37620
17-03-18 04:32:47.104 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:32:47.104 -07 000000502 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 04:32:47.244 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:32:47.244 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:32:47.244 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:47.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:32:47.244 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:32:47.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:47.254 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:47.254 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:47.254 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:32:47.254 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:32:47.274 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:47.274 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:32:47.454 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:32:47.454 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:32:47.494 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:47.504 -07 000000447 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:32:47.504 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:32:47.504 -07 000000012 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:47.504 -07 000000012 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:32:47.504 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 04:32:48.454 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:48.454 -07 000000480 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:32:48.464 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:48.464 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:48.484 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:48.484 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:32:48.484 -07 000000012 INF: Y Motor: Moved to 74.0078 after 1439 ms (table move)
17-03-18 04:32:48.484 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172213 mm (DAC = 37620)
17-03-18 04:32:48.484 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.494 -07 000000480 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:32:48.494 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:32:48.494 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.494 -07 000000480 INF: FPGA: Recv ZSGSRD 36095
17-03-18 04:32:48.504 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.504 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.504 -07 000000480 INF: FPGA: Recv ZSGSRD 36095
17-03-18 04:32:48.514 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.514 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.514 -07 000000382 INF: FPGA: Recv ZSGSRD 36100
17-03-18 04:32:48.524 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.524 -07 000000382 INF: FPGA: Recv ZSGSRD 36105
17-03-18 04:32:48.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.534 -07 000000480 INF: FPGA: Recv ZSGSRD 36097
17-03-18 04:32:48.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.544 -07 000000461 INF: FPGA: Recv ZSGSRD 36097
17-03-18 04:32:48.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.554 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.554 -07 000000461 INF: FPGA: Recv ZSGSRD 36098
17-03-18 04:32:48.564 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.564 -07 000000461 INF: FPGA: Recv ZSGSRD 36099
17-03-18 04:32:48.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:48.574 -07 000000461 INF: FPGA: Recv ZSGSRD 36093
17-03-18 04:32:48.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.584 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:48.584 -07 000000462 INF: FPGA: Recv ZPIEZORD 32075
17-03-18 04:32:48.594 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:48.594 -07 000000590 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.9 V.
17-03-18 04:32:48.594 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36098 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36098 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36093 (-171.3 uncal um), Max = 36105 (-171.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:32:48.594 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36098, posNoise = 7, negNoise = 5
17-03-18 04:32:48.594 -07 000000590 INF: Z Motor: After move to -0.172213, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:48.594 -07 000000590 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-18 04:32:48.594 -07 000000590 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:48.644 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 04:32:48.644 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:48.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:48.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:48.644 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:48.644 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:48.644 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:48.644 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:48.644 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:48.654 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:48.654 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:48.654 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:48.664 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:32:48.664 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:32:48.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:48.714 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:49.014 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:49.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:49.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:49.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) start.
17-03-18 04:32:49.054 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:49.054 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:49.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:32:49.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 04:32:49.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:49.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:32:49.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:32:49.154 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:49.154 -07 000000462 INF: Autofocus start
17-03-18 04:32:49.154 -07 000000462 INF: MeasureProfile start
17-03-18 04:32:49.154 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:49.164 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:49.164 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:49.164 -07 000000462 INF: MeasureProfile done
17-03-18 04:32:49.164 -07 000000462 INF: X=-32  Z correction [um]=-0.2344
17-03-18 04:32:49.164 -07 000000462 INF: Autofocus finished
17-03-18 04:32:49.364 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:49.364 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:49.364 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172224561904422. ----------
17-03-18 04:32:49.374 -07 000000610 INF: Cycle	126	Tile	18	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:49.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36082, sync = True, waitForSettling = True)
17-03-18 04:32:49.374 -07 000000610 INF: Z Motor: Moving to -0.165173 mm, started at -0.172225 mm, distance = 7.05 um
17-03-18 04:32:49.374 -07 000000610 INF: FPGA: Xmit ZDACW 36082\n [Z Motor]
17-03-18 04:32:49.374 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:32:49.384 -07 000000610 INF: FPGA: 'ZDACW 36082' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:32:49.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:49.384 -07 000000480 INF: FPGA: Recv ZDACR 36082
17-03-18 04:32:49.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:49.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.544 -07 000000487 INF: FPGA: Recv ZSGSRD 35003
17-03-18 04:32:49.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:49.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.554 -07 000000480 INF: FPGA: Recv ZSGSRD 35002
17-03-18 04:32:49.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35002
17-03-18 04:32:49.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.574 -07 000000487 INF: FPGA: Recv ZSGSRD 34999
17-03-18 04:32:49.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.584 -07 000000590 INF: FPGA: Recv ZSGSRD 35007
17-03-18 04:32:49.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.594 -07 000000480 INF: FPGA: Recv ZSGSRD 35001
17-03-18 04:32:49.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35001
17-03-18 04:32:49.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.614 -07 000000487 INF: FPGA: Recv ZSGSRD 35006
17-03-18 04:32:49.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.634 -07 000000480 INF: FPGA: Recv ZSGSRD 35005
17-03-18 04:32:49.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:49.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:49.644 -07 000000467 INF: FPGA: Recv ZSGSRD 35000
17-03-18 04:32:49.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:49.654 -07 000000480 INF: FPGA: Recv ZPIEZORD 30642
17-03-18 04:32:49.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:49.664 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.506 V. Piezo Error = -9.6 V.
17-03-18 04:32:49.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35003 (-164.3 uncal um), Error = 0.8 uncal um, Median = 35002 (-164.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34999 (-164.3 uncal um), Max = 35007 (-164.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:32:49.664 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35003, posNoise = 4, negNoise = 4
17-03-18 04:32:49.664 -07 000000610 INF: Z Motor: After move to -0.165173, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:49.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 04:32:49.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:49.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:49.664 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:49.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:49.664 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:49.664 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:49.664 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:49.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:49.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:49.664 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:49.664 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:49.664 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:49.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:32:49.664 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:49.674 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:49.674 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:49.674 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:32:49.674 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:32:49.674 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:32:49.674 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:32:49.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36258 150\n [Camera]
17-03-18 04:32:49.884 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:50.304 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:50.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:50.304 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:50.304 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:50.304 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 04:32:50.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:50.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:50.304 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:50.304 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:50.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 04:32:50.374 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.994908,
17-03-18 04:32:50.494 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36258 807
17-03-18 04:32:50.644 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:50.684 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:32:50.684 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:32:50.684 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:50.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:32:50.684 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:32:50.684 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:50.684 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:50.684 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:32:50.684 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:50.694 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:32:50.844 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:50.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:50.854 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:50.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:50.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:32:50.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:50.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:50.854 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:50.854 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:50.854 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:32:51.044 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:32:51.044 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:51.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36258 150' command took 2 ms to send, 1351 ms to get response, and 1359 ms overall
17-03-18 04:32:51.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:32:51.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165190049609194. ------
17-03-18 04:32:51.044 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17154 mm
17-03-18 04:32:51.044 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:51.044 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:51.054 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:32:51.054 -07 000000590 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:32:51.054 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37472, sync = True, waitForSettling = False)
17-03-18 04:32:51.054 -07 000000487 INF: Z Motor: Moving to -0.171536 mm, started at -0.165190 mm, distance = -6.35 um
17-03-18 04:32:51.054 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:51.054 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:51.054 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:32:51.054 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:32:51.064 -07 000000487 INF: FPGA: Xmit ZDACW 37472\n [Z Motor]
17-03-18 04:32:51.064 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:51.064 -07 000000590 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:51.064 -07 000000590 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:32:51.064 -07 000000590 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:32:51.064 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:32:51.074 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:51.074 -07 000000487 INF: FPGA: 'ZDACW 37472' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:51.084 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:32:51.094 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:51.094 -07 000000424 INF: FPGA: Recv ZDACR 37472
17-03-18 04:32:51.104 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:32:51.104 -07 000000487 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:32:51.244 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:32:51.244 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:32:51.244 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:51.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:32:51.244 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:32:51.244 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:51.244 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:51.254 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:32:51.254 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:32:51.254 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:32:51.274 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:51.274 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:32:51.454 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:32:51.454 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:32:51.484 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:51.494 -07 000000424 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:32:51.494 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:32:51.494 -07 000000590 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:51.494 -07 000000590 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:32:51.494 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 04:32:51.674 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:52.444 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:52.444 -07 000000455 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:32:52.454 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:52.454 -07 000000590 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:52.464 -07 000000590 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:32:52.464 -07 000000590 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:32:52.474 -07 000000590 INF: Y Motor: Moved to 74.8311 after 1419 ms (table move)
17-03-18 04:32:52.474 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171536 mm (DAC = 37472)
17-03-18 04:32:52.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.474 -07 000000480 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:32:52.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:32:52.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.484 -07 000000467 INF: FPGA: Recv ZSGSRD 35987
17-03-18 04:32:52.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.494 -07 000000581 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:32:52.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.504 -07 000000487 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:32:52.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.514 -07 000000424 INF: FPGA: Recv ZSGSRD 35995
17-03-18 04:32:52.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:32:52.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.534 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.534 -07 000000487 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:32:52.544 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.544 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.544 -07 000000487 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:32:52.554 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.554 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.554 -07 000000581 INF: FPGA: Recv ZSGSRD 35985
17-03-18 04:32:52.564 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:52.564 -07 000000455 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:32:52.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.574 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:52.574 -07 000000581 INF: FPGA: Recv ZPIEZORD 31935
17-03-18 04:32:52.584 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:52.584 -07 000000606 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -9.0 V.
17-03-18 04:32:52.584 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35991 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35992 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35985 (-170.6 uncal um), Max = 35997 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:32:52.584 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35991, posNoise = 6, negNoise = 6
17-03-18 04:32:52.584 -07 000000606 INF: Z Motor: After move to -0.171536, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:52.584 -07 000000606 INF: Z Motor: Settle wait time = 1424 ms, measure time = 106 ms (allowed 150 ms), total time = 1530 ms
17-03-18 04:32:52.584 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:32:52.634 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 04:32:52.634 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:32:52.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:52.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:52.634 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:52.634 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:32:52.634 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:52.634 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:52.644 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:32:52.644 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:32:52.644 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:32:52.644 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:32:52.654 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:32:52.654 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:32:52.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:32:52.694 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:32:52.994 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:32:52.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:32:52.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:32:52.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 04:32:53.034 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:32:53.034 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:32:53.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:32:53.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:32:53.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:53.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:32:53.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:32:53.134 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:53.134 -07 000000606 INF: Autofocus start
17-03-18 04:32:53.134 -07 000000606 INF: MeasureProfile start
17-03-18 04:32:53.134 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:53.144 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:32:53.144 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:32:53.144 -07 000000606 INF: MeasureProfile done
17-03-18 04:32:53.144 -07 000000606 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:32:53.144 -07 000000606 INF: Autofocus finished
17-03-18 04:32:53.344 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:32:53.344 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:32:53.344 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171537171205254. ----------
17-03-18 04:32:53.344 -07 000000610 INF: Cycle	126	Tile	19	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:32:53.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36005, sync = True, waitForSettling = True)
17-03-18 04:32:53.354 -07 000000610 INF: Z Motor: Moving to -0.164820 mm, started at -0.171537 mm, distance = 6.72 um
17-03-18 04:32:53.354 -07 000000610 INF: FPGA: Xmit ZDACW 36005\n [Z Motor]
17-03-18 04:32:53.354 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:32:53.364 -07 000000610 INF: FPGA: 'ZDACW 36005' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:32:53.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:53.364 -07 000000480 INF: FPGA: Recv ZDACR 36005
17-03-18 04:32:53.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:32:53.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.524 -07 000000618 INF: FPGA: Recv ZSGSRD 34948
17-03-18 04:32:53.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:32:53.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.534 -07 000000480 INF: FPGA: Recv ZSGSRD 34954
17-03-18 04:32:53.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.544 -07 000000618 INF: FPGA: Recv ZSGSRD 34942
17-03-18 04:32:53.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.554 -07 000000618 INF: FPGA: Recv ZSGSRD 34948
17-03-18 04:32:53.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.564 -07 000000618 INF: FPGA: Recv ZSGSRD 34953
17-03-18 04:32:53.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.574 -07 000000467 INF: FPGA: Recv ZSGSRD 34946
17-03-18 04:32:53.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.584 -07 000000467 INF: FPGA: Recv ZSGSRD 34949
17-03-18 04:32:53.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.594 -07 000000618 INF: FPGA: Recv ZSGSRD 34946
17-03-18 04:32:53.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.604 -07 000000618 INF: FPGA: Recv ZSGSRD 34950
17-03-18 04:32:53.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:32:53.614 -07 000000467 INF: FPGA: Recv ZSGSRD 34949
17-03-18 04:32:53.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:32:53.624 -07 000000480 INF: FPGA: Recv ZPIEZORD 30563
17-03-18 04:32:53.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:32:53.634 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.494 V. Piezo Error = -9.6 V.
17-03-18 04:32:53.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34948 (-164.0 uncal um), Error = 0.8 uncal um, Median = 34948 (-164.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34942 (-163.9 uncal um), Max = 34954 (-164.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:32:53.634 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34948, posNoise = 6, negNoise = 6
17-03-18 04:32:53.634 -07 000000610 INF: Z Motor: After move to -0.164820, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:32:53.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:32:53.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:32:53.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:32:53.634 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:32:53.634 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:32:53.634 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:32:53.634 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:32:53.634 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:32:53.634 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:32:53.634 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:32:53.634 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:32:53.644 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:32:53.644 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:32:53.644 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:32:53.644 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:32:53.644 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:32:53.644 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:32:53.654 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:32:53.654 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:53.654 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:32:53.654 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:32:53.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36181 150\n [Camera]
17-03-18 04:32:53.854 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:32:54.274 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:32:54.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:32:54.274 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:54.274 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:54.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:32:54.274 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:32:54.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:32:54.284 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:54.284 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:54.284 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:32:54.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36181 807
17-03-18 04:32:54.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:32:54.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:32:54.664 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:32:54.664 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:54.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:32:54.664 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:32:54.664 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:54.664 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:54.664 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:32:54.664 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:32:54.674 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:32:54.824 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:32:54.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:32:54.824 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:32:54.824 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:32:54.824 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:32:54.824 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:32:54.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:32:54.824 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:32:54.824 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:32:54.824 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:32:55.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:32:55.014 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:32:55.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36181 150' command took 2 ms to send, 1355 ms to get response, and 1360 ms overall
17-03-18 04:32:55.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:32:55.224 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:32:55.224 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:55.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:32:55.234 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:32:55.234 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:32:55.234 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:32:55.234 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:32:55.234 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:32:55.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:32:55.244 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:32:55.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 04:32:55.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:32:55.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:32:55.324 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:32:55.344 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:32:55.344 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 04:32:55.354 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:32:55.354 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:32:55.734 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.020806,
17-03-18 04:32:55.854 -07 000000012 INF: FPGA: Recv EMIN
17-03-18 04:32:55.854 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:32:55.854 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:32:55.854 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 04:32:55.864 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:32:55.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:32:55.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164836717941397. ------
17-03-18 04:32:55.864 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:32:55.864 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13933 mm
17-03-18 04:32:55.864 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:32:55.864 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:32:55.864 -07 000000467 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 04:32:55.864 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30436, sync = True, waitForSettling = False)
17-03-18 04:32:55.864 -07 000000618 INF: Z Motor: Moving to -0.139327 mm, started at -0.164837 mm, distance = 25.51 um
17-03-18 04:32:55.864 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:32:55.874 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:32:55.874 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:32:55.874 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:32:55.884 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:32:55.884 -07 000000467 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:32:55.884 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:32:55.884 -07 000000467 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:32:55.884 -07 000000467 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:32:55.894 -07 000000618 INF: FPGA: Xmit ZDACW 30436\n [Z Motor]
17-03-18 04:32:55.894 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:32:55.904 -07 000000467 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:32:55.904 -07 000000618 INF: FPGA: 'ZDACW 30436' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:32:55.914 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:32:55.914 -07 000000462 INF: FPGA: Recv ZDACR 30436
17-03-18 04:32:55.924 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:32:55.924 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:32:56.084 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:32:56.084 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 212 ms overall
17-03-18 04:32:56.674 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:32:56.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:32:57.524 -07 000000447 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 04:32:57.524 -07 000000467 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-18 04:32:57.524 -07 000000467 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:32:57.524 -07 000000467 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 04:32:57.524 -07 000000467 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.097 mm/sec
17-03-18 04:33:00.374 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:00.374 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-18 04:33:00.384 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:00.384 -07 000000467 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:00.424 -07 000000467 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:00.424 -07 000000467 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 04:33:00.424 -07 000000467 INF: Y Motor: Moved to 59.9111 after 4553 ms
17-03-18 04:33:00.424 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139327 mm (DAC = 30436)
17-03-18 04:33:00.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.424 -07 000000447 INF: FPGA: Recv ZSGSRD 30980
17-03-18 04:33:00.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:00.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.434 -07 000000467 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:33:00.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.444 -07 000000461 INF: FPGA: Recv ZSGSRD 30984
17-03-18 04:33:00.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.454 -07 000000467 INF: FPGA: Recv ZSGSRD 30978
17-03-18 04:33:00.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.464 -07 000000447 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:33:00.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.474 -07 000000447 INF: FPGA: Recv ZSGSRD 30976
17-03-18 04:33:00.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.484 -07 000000447 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:33:00.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.494 -07 000000447 INF: FPGA: Recv ZSGSRD 30976
17-03-18 04:33:00.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.504 -07 000000480 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:33:00.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:00.514 -07 000000480 INF: FPGA: Recv ZSGSRD 30982
17-03-18 04:33:00.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.524 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:00.524 -07 000000569 INF: FPGA: Recv ZPIEZORD 26404
17-03-18 04:33:00.534 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:00.534 -07 000000626 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -10.0 V.
17-03-18 04:33:00.534 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30976 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30975 (-138.5 uncal um), Max = 30984 (-138.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:33:00.534 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 6, negNoise = 3
17-03-18 04:33:00.534 -07 000000626 INF: Z Motor: After move to -0.139327, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:00.534 -07 000000626 INF: Z Motor: Settle wait time = 4556 ms, measure time = 107 ms (allowed 150 ms), total time = 4663 ms
17-03-18 04:33:00.534 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:00.584 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-18 04:33:00.584 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:00.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:00.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:01.464 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:01.464 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:01.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:01.464 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:01.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:01.464 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:33:01.484 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 04:33:01.484 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:01.484 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:01.484 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:01.494 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:33:01.494 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 04:33:01.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:01.544 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:01.674 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:01.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:01.774 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.011254,
17-03-18 04:33:01.844 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:01.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:01.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:01.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-18 04:33:01.884 -07 000000569 INF: FPGA: Recv @CAMSNAP 382
17-03-18 04:33:01.884 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:01.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 04:33:01.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 04:33:01.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:01.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:33:01.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 04:33:01.984 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:01.984 -07 000000424 INF: Image SNR check: start
17-03-18 04:33:01.984 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:01.994 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:01.994 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:02.004 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=126.27]
17-03-18 04:33:02.004 -07 000000424 INF: Autofocus start
17-03-18 04:33:02.004 -07 000000424 INF: MeasureProfile start
17-03-18 04:33:02.014 -07 000000424 INF: MeasureProfile done
17-03-18 04:33:02.014 -07 000000424 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 04:33:02.014 -07 000000424 INF: Autofocus finished
17-03-18 04:33:02.194 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:02.194 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:02.194 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139332595738606. ----------
17-03-18 04:33:02.194 -07 000000610 INF: Cycle	126	Tile	1	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:02.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28914, sync = True, waitForSettling = True)
17-03-18 04:33:02.204 -07 000000610 INF: Z Motor: Moving to -0.132360 mm, started at -0.139333 mm, distance = 6.97 um
17-03-18 04:33:02.204 -07 000000610 INF: FPGA: Xmit ZDACW 28914\n [Z Motor]
17-03-18 04:33:02.204 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:33:02.214 -07 000000610 INF: FPGA: 'ZDACW 28914' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:02.214 -07 000000424 INF: FPGA: Recv ZDACR 28914
17-03-18 04:33:02.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.374 -07 000000569 INF: FPGA: Recv ZSGSRD 29896
17-03-18 04:33:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:02.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29896
17-03-18 04:33:02.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.394 -07 000000012 INF: FPGA: Recv ZSGSRD 29884
17-03-18 04:33:02.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.404 -07 000000424 INF: FPGA: Recv ZSGSRD 29889
17-03-18 04:33:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.414 -07 000000455 INF: FPGA: Recv ZSGSRD 29892
17-03-18 04:33:02.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.424 -07 000000012 INF: FPGA: Recv ZSGSRD 29892
17-03-18 04:33:02.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.434 -07 000000462 INF: FPGA: Recv ZSGSRD 29887
17-03-18 04:33:02.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.444 -07 000000012 INF: FPGA: Recv ZSGSRD 29892
17-03-18 04:33:02.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.454 -07 000000462 INF: FPGA: Recv ZSGSRD 29896
17-03-18 04:33:02.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:02.464 -07 000000480 INF: FPGA: Recv ZSGSRD 29894
17-03-18 04:33:02.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:02.474 -07 000000467 INF: FPGA: Recv ZPIEZORD 25253
17-03-18 04:33:02.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:02.484 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -10.2 V.
17-03-18 04:33:02.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29892 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29892 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29884 (-131.5 uncal um), Max = 29896 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:33:02.484 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29892, posNoise = 4, negNoise = 8
17-03-18 04:33:02.484 -07 000000610 INF: Z Motor: After move to -0.132360, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:02.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:33:02.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:02.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:02.484 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:02.484 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:02.484 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:02.484 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:02.484 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:02.484 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:02.484 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:33:02.484 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:02.484 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:02.484 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:33:02.494 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:02.494 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:02.504 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:33:02.504 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:02.504 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:33:02.504 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:02.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:33:02.514 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:02.514 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:33:02.524 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 04:33:02.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29090 150\n [Camera]
17-03-18 04:33:02.724 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:03.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:03.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:03.144 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:03.144 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:03.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:33:03.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:03.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:03.144 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:03.144 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:03.144 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:33:03.334 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29090 808
17-03-18 04:33:03.484 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:33:03.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:33:03.544 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:33:03.544 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:03.544 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:33:03.544 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:33:03.544 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:03.554 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:03.554 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:33:03.554 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:03.554 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:33:03.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:03.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:03.694 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:03.694 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:03.694 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:33:03.694 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:03.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:03.694 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:03.694 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:03.694 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 04:33:03.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:33:03.884 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:03.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29090 150' command took 2 ms to send, 1351 ms to get response, and 1359 ms overall
17-03-18 04:33:03.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:03.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132355901352654. ------
17-03-18 04:33:03.884 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:03.884 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13876 mm
17-03-18 04:33:03.884 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:03.894 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:03.894 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:33:03.894 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:33:03.894 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30312, sync = True, waitForSettling = False)
17-03-18 04:33:03.894 -07 000000480 INF: Z Motor: Moving to -0.138759 mm, started at -0.132356 mm, distance = -6.40 um
17-03-18 04:33:03.894 -07 000000581 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 04:33:03.894 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:03.904 -07 000000480 INF: FPGA: Xmit ZDACW 30312\n [Z Motor]
17-03-18 04:33:03.904 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:33:04.044 -07 000000480 INF: FPGA: 'ZDACW 30312' command took 0 ms to send, 0 ms to get response, and 155 ms overall
17-03-18 04:33:04.044 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:04.054 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:04.054 -07 000000590 INF: FPGA: Recv YRDPOS 122698
17-03-18 04:33:04.054 -07 000000581 INF: FPGA: 'YRDPOS' command took 1 ms to send, 1 ms to get response, and 159 ms overall
17-03-18 04:33:04.054 -07 000000581 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:04.054 -07 000000581 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:04.054 -07 000000581 INF: Y Motor: Moving 1330 steps2
17-03-18 04:33:04.054 -07 000000590 INF: FPGA: Recv ZDACR 30312
17-03-18 04:33:04.064 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:33:04.064 -07 000000480 INF: Z Motor: MoveAbsStepped took 168 ms (did NOT wait for settling yet))
17-03-18 04:33:04.064 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:04.094 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:04.094 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 04:33:04.104 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 408 ms.
17-03-18 04:33:04.104 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:33:04.104 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:04.104 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 412 ms.
17-03-18 04:33:04.104 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:33:04.104 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:04.104 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:04.114 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:33:04.114 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 04:33:04.114 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 04:33:04.434 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:33:04.434 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:33:04.474 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:04.484 -07 000000467 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:33:04.484 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:33:04.484 -07 000000581 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:04.484 -07 000000581 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:33:04.484 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.831 mm, average velocity = 2.149 mm/sec
17-03-18 04:33:05.434 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:05.434 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:33:05.444 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:05.444 -07 000000581 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:05.474 -07 000000581 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:05.474 -07 000000581 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:05.474 -07 000000581 INF: Y Motor: Moved to 60.7329 after 1581 ms (table move)
17-03-18 04:33:05.474 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138759 mm (DAC = 30312)
17-03-18 04:33:05.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.474 -07 000000512 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:33:05.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:33:05.484 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:33:05.494 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.494 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.494 -07 000000461 INF: FPGA: Recv ZSGSRD 30889
17-03-18 04:33:05.504 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.504 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.504 -07 000000569 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:33:05.514 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.514 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.514 -07 000000512 INF: FPGA: Recv ZSGSRD 30895
17-03-18 04:33:05.524 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.524 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.524 -07 000000569 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:33:05.534 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.534 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.534 -07 000000424 INF: FPGA: Recv ZSGSRD 30884
17-03-18 04:33:05.544 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.544 -07 000000512 INF: FPGA: Recv ZSGSRD 30881
17-03-18 04:33:05.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.554 -07 000000424 INF: FPGA: Recv ZSGSRD 30890
17-03-18 04:33:05.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:05.564 -07 000000512 INF: FPGA: Recv ZSGSRD 30892
17-03-18 04:33:05.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.574 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:05.574 -07 000000590 INF: FPGA: Recv ZPIEZORD 26585
17-03-18 04:33:05.584 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:05.584 -07 000000502 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.5 V.
17-03-18 04:33:05.584 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30891 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30893 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30881 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:33:05.584 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30891, posNoise = 4, negNoise = 10
17-03-18 04:33:05.584 -07 000000502 INF: Z Motor: After move to -0.138759, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:05.584 -07 000000502 INF: Z Motor: Settle wait time = 1584 ms, measure time = 105 ms (allowed 150 ms), total time = 1689 ms
17-03-18 04:33:05.584 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:05.634 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 04:33:05.634 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:05.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:05.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:05.634 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:05.634 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:05.634 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:05.634 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:05.634 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:05.634 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:05.644 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:05.644 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:05.654 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:33:05.654 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:33:05.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:05.704 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:06.004 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:06.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:06.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:06.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:06.044 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:06.044 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:06.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 04:33:06.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:33:06.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:06.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:06.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:33:06.144 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:06.144 -07 000000590 INF: Autofocus start
17-03-18 04:33:06.144 -07 000000590 INF: MeasureProfile start
17-03-18 04:33:06.144 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:06.154 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:06.154 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:06.154 -07 000000590 INF: MeasureProfile done
17-03-18 04:33:06.154 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:33:06.154 -07 000000590 INF: Autofocus finished
17-03-18 04:33:06.354 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:06.354 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:06.354 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138773689282273. ----------
17-03-18 04:33:06.354 -07 000000610 INF: Cycle	126	Tile	2	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:06.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28837, sync = True, waitForSettling = True)
17-03-18 04:33:06.364 -07 000000610 INF: Z Motor: Moving to -0.132007 mm, started at -0.138774 mm, distance = 6.77 um
17-03-18 04:33:06.364 -07 000000610 INF: FPGA: Xmit ZDACW 28837\n [Z Motor]
17-03-18 04:33:06.364 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:33:06.374 -07 000000610 INF: FPGA: 'ZDACW 28837' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:06.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:06.374 -07 000000480 INF: FPGA: Recv ZDACR 28837
17-03-18 04:33:06.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:06.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29843
17-03-18 04:33:06.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:06.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.544 -07 000000467 INF: FPGA: Recv ZSGSRD 29836
17-03-18 04:33:06.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.554 -07 000000480 INF: FPGA: Recv ZSGSRD 29842
17-03-18 04:33:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.564 -07 000000590 INF: FPGA: Recv ZSGSRD 29835
17-03-18 04:33:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29835
17-03-18 04:33:06.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.584 -07 000000462 INF: FPGA: Recv ZSGSRD 29840
17-03-18 04:33:06.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.594 -07 000000424 INF: FPGA: Recv ZSGSRD 29834
17-03-18 04:33:06.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.604 -07 000000590 INF: FPGA: Recv ZSGSRD 29836
17-03-18 04:33:06.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.614 -07 000000569 INF: FPGA: Recv ZSGSRD 29837
17-03-18 04:33:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:06.624 -07 000000462 INF: FPGA: Recv ZSGSRD 29842
17-03-18 04:33:06.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:06.634 -07 000000424 INF: FPGA: Recv ZPIEZORD 25171
17-03-18 04:33:06.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:06.644 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -10.2 V.
17-03-18 04:33:06.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29838 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29836 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29843 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:33:06.644 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29838, posNoise = 5, negNoise = 4
17-03-18 04:33:06.644 -07 000000610 INF: Z Motor: After move to -0.132007, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:06.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:33:06.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:06.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:06.644 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:06.644 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:06.644 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:06.644 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:06.644 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:06.644 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:06.644 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:06.644 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:06.644 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:06.644 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:06.654 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:06.654 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:06.654 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:06.654 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:06.664 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:33:06.664 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:33:06.664 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:33:06.664 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:33:06.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29013 150\n [Camera]
17-03-18 04:33:06.684 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:06.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:06.864 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:07.144 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.997626,
17-03-18 04:33:07.294 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:07.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:07.294 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:07.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:07.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:07.294 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:07.294 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:07.294 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:33:07.304 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:07.304 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:33:07.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29013 807
17-03-18 04:33:07.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:07.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:33:07.674 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:33:07.674 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:07.684 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:33:07.684 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:33:07.684 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:07.684 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:07.684 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:07.684 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:33:07.694 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:33:07.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1162
17-03-18 04:33:07.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1162
17-03-18 04:33:07.844 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:07.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1162
17-03-18 04:33:07.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1162
17-03-18 04:33:07.844 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:07.964 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:07.964 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:33:07.974 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:07.974 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:33:08.024 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:08.034 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:08.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29013 150' command took 2 ms to send, 1346 ms to get response, and 1360 ms overall
17-03-18 04:33:08.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:08.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132008993896998. ------
17-03-18 04:33:08.034 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:08.034 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13881 mm
17-03-18 04:33:08.034 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:08.034 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30322, sync = True, waitForSettling = False)
17-03-18 04:33:08.034 -07 000000502 INF: Z Motor: Moving to -0.138805 mm, started at -0.132009 mm, distance = -6.80 um
17-03-18 04:33:08.034 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:33:08.034 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 04:33:08.044 -07 000000502 INF: FPGA: Xmit ZDACW 30322\n [Z Motor]
17-03-18 04:33:08.054 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:08.364 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:33:08.374 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:33:08.374 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:08.374 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:33:08.374 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:33:08.374 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:08.374 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:08.374 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:08.374 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 04:33:08.384 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-18 04:33:08.384 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:08.384 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:33:08.384 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-18 04:33:08.384 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 326 ms to get response, and 346 ms overall
17-03-18 04:33:08.384 -07 000000455 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:08.384 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 346 ms to get response, and 350 ms overall
17-03-18 04:33:08.384 -07 000000502 INF: FPGA: 'ZDACW 30322' command took 0 ms to send, 336 ms to get response, and 347 ms overall
17-03-18 04:33:08.384 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:08.394 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:08.394 -07 000000462 INF: FPGA: Recv ZDACR 30322
17-03-18 04:33:08.394 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:33:08.394 -07 000000502 INF: Z Motor: MoveAbsStepped took 351 ms (did NOT wait for settling yet))
17-03-18 04:33:08.394 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:08.394 -07 000000455 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:33:08.404 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:08.594 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:08.594 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 04:33:08.774 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:33:08.774 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 04:33:08.824 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:08.824 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:33:08.834 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:33:08.834 -07 000000455 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:08.834 -07 000000455 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:33:08.834 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.192 mm/sec
17-03-18 04:33:09.784 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:09.784 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:33:09.794 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.794 -07 000000455 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:09.824 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:09.824 -07 000000455 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:09.824 -07 000000455 INF: Y Motor: Moved to 61.5640 after 1781 ms (table move)
17-03-18 04:33:09.824 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138805 mm (DAC = 30322)
17-03-18 04:33:09.824 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30884
17-03-18 04:33:09.834 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:09.834 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.834 -07 000000590 INF: FPGA: Recv ZSGSRD 30890
17-03-18 04:33:09.844 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.844 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.844 -07 000000455 INF: FPGA: Recv ZSGSRD 30893
17-03-18 04:33:09.854 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.854 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.854 -07 000000502 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:33:09.864 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.864 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.864 -07 000000462 INF: FPGA: Recv ZSGSRD 30896
17-03-18 04:33:09.874 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.874 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.874 -07 000000462 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:33:09.884 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.884 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.884 -07 000000012 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:33:09.894 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.894 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.894 -07 000000462 INF: FPGA: Recv ZSGSRD 30888
17-03-18 04:33:09.904 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.904 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.904 -07 000000590 INF: FPGA: Recv ZSGSRD 30900
17-03-18 04:33:09.914 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:09.914 -07 000000590 INF: FPGA: Recv ZSGSRD 30895
17-03-18 04:33:09.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.924 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:09.924 -07 000000012 INF: FPGA: Recv ZPIEZORD 26636
17-03-18 04:33:09.934 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:09.934 -07 000000461 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.4 V.
17-03-18 04:33:09.934 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30894 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30884 (-137.9 uncal um), Max = 30904 (-138.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:33:09.934 -07 000000461 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30894, posNoise = 10, negNoise = 10
17-03-18 04:33:09.934 -07 000000461 INF: Z Motor: After move to -0.138805, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:09.934 -07 000000461 INF: Z Motor: Settle wait time = 1784 ms, measure time = 107 ms (allowed 150 ms), total time = 1891 ms
17-03-18 04:33:09.934 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:09.984 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1943 ms
17-03-18 04:33:09.984 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:09.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:09.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:09.984 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:09.984 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:09.984 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:09.984 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:09.984 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:09.984 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:09.994 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:09.994 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:10.004 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:33:10.004 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:33:10.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:10.054 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:10.354 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:10.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:10.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:10.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-18 04:33:10.394 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:10.394 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:10.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:33:10.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:33:10.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:10.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:10.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:33:10.494 -07 000000382 INF: Autofocus start
17-03-18 04:33:10.494 -07 000000382 INF: MeasureProfile start
17-03-18 04:33:10.494 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:10.504 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:10.504 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:33:10.504 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:10.504 -07 000000382 INF: MeasureProfile done
17-03-18 04:33:10.504 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:10.504 -07 000000382 INF: Autofocus finished
17-03-18 04:33:10.704 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:10.704 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:10.704 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138792961918698. ----------
17-03-18 04:33:10.704 -07 000000610 INF: Cycle	126	Tile	3	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:10.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28829, sync = True, waitForSettling = True)
17-03-18 04:33:10.714 -07 000000610 INF: Z Motor: Moving to -0.131971 mm, started at -0.138793 mm, distance = 6.82 um
17-03-18 04:33:10.714 -07 000000610 INF: FPGA: Xmit ZDACW 28829\n [Z Motor]
17-03-18 04:33:10.714 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:33:10.724 -07 000000610 INF: FPGA: 'ZDACW 28829' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:10.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:10.724 -07 000000618 INF: FPGA: Recv ZDACR 28829
17-03-18 04:33:10.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:10.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.884 -07 000000502 INF: FPGA: Recv ZSGSRD 29828
17-03-18 04:33:10.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.894 -07 000000618 INF: FPGA: Recv ZSGSRD 29838
17-03-18 04:33:10.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29829
17-03-18 04:33:10.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.914 -07 000000618 INF: FPGA: Recv ZSGSRD 29826
17-03-18 04:33:10.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29833
17-03-18 04:33:10.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.934 -07 000000618 INF: FPGA: Recv ZSGSRD 29831
17-03-18 04:33:10.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.944 -07 000000590 INF: FPGA: Recv ZSGSRD 29837
17-03-18 04:33:10.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.954 -07 000000447 INF: FPGA: Recv ZSGSRD 29834
17-03-18 04:33:10.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.964 -07 000000382 INF: FPGA: Recv ZSGSRD 29830
17-03-18 04:33:10.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:10.974 -07 000000618 INF: FPGA: Recv ZSGSRD 29836
17-03-18 04:33:10.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:10.984 -07 000000012 INF: FPGA: Recv ZPIEZORD 25251
17-03-18 04:33:10.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:10.994 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -10.0 V.
17-03-18 04:33:10.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29832 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29832 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29826 (-131.1 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:10.994 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29832, posNoise = 6, negNoise = 6
17-03-18 04:33:10.994 -07 000000610 INF: Z Motor: After move to -0.131971, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:10.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:33:10.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:10.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:10.994 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:10.994 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:10.994 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:10.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:10.994 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:10.994 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:10.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:10.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:10.994 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:10.994 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:11.004 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:11.004 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:11.004 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:11.004 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:11.014 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:33:11.014 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:11.014 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:33:11.014 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:11.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29006 150\n [Camera]
17-03-18 04:33:11.214 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:11.634 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:11.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:11.634 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:11.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:11.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:11.644 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:11.644 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:11.644 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:33:11.644 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:11.644 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:33:11.684 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:11.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:11.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29006 807
17-03-18 04:33:11.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:12.024 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:33:12.024 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:33:12.024 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:12.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:33:12.024 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:33:12.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:12.024 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:12.024 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:33:12.034 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:12.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:33:12.184 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:12.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:12.184 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:12.184 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:12.184 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:33:12.184 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:12.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:12.184 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:12.184 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:12.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:33:12.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:33:12.374 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:12.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29006 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-18 04:33:12.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:12.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131970448624148. ------
17-03-18 04:33:12.374 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13830 mm
17-03-18 04:33:12.374 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:12.374 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:12.384 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:33:12.384 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 04:33:12.384 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:12.384 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30211, sync = True, waitForSettling = False)
17-03-18 04:33:12.384 -07 000000618 INF: Z Motor: Moving to -0.138297 mm, started at -0.131970 mm, distance = -6.33 um
17-03-18 04:33:12.394 -07 000000618 INF: FPGA: Xmit ZDACW 30211\n [Z Motor]
17-03-18 04:33:12.394 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:33:12.404 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:12.414 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:12.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:33:12.574 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:33:12.574 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:12.574 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:33:12.574 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:33:12.584 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:12.584 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:12.584 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:33:12.584 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:33:12.584 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:33:13.324 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:33:13.324 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:33:13.324 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:13.324 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 900 ms to get response, and 930 ms overall
17-03-18 04:33:13.324 -07 000000618 INF: FPGA: 'ZDACW 30211' command took 0 ms to send, 920 ms to get response, and 936 ms overall
17-03-18 04:33:13.324 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:13.324 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.005817,
17-03-18 04:33:13.324 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 910 ms to get response, and 936 ms overall
17-03-18 04:33:13.324 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:13.324 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:13.324 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:33:13.324 -07 000000626 INF: FPGA: Recv ZDACR 30211
17-03-18 04:33:13.334 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:13.334 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:13.334 -07 000000618 INF: Z Motor: MoveAbsStepped took 946 ms (did NOT wait for settling yet))
17-03-18 04:33:13.704 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:33:13.704 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 385 ms overall
17-03-18 04:33:13.754 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:13.754 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:33:13.764 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:33:13.764 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:13.764 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 04:33:13.764 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-18 04:33:14.714 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:14.714 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:33:14.724 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:14.724 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:14.754 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:14.754 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:14.754 -07 000000382 INF: Y Motor: Moved to 62.3955 after 2366 ms (table move)
17-03-18 04:33:14.754 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138297 mm (DAC = 30211)
17-03-18 04:33:14.754 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.754 -07 000000626 INF: FPGA: Recv ZSGSRD 30819
17-03-18 04:33:14.764 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:33:14.764 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.764 -07 000000012 INF: FPGA: Recv ZSGSRD 30817
17-03-18 04:33:14.774 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.774 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30820
17-03-18 04:33:14.784 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.784 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.784 -07 000000590 INF: FPGA: Recv ZSGSRD 30816
17-03-18 04:33:14.794 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.794 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.794 -07 000000012 INF: FPGA: Recv ZSGSRD 30815
17-03-18 04:33:14.804 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.804 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.804 -07 000000590 INF: FPGA: Recv ZSGSRD 30812
17-03-18 04:33:14.814 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.814 -07 000000569 INF: FPGA: Recv ZSGSRD 30819
17-03-18 04:33:14.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.824 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.824 -07 000000618 INF: FPGA: Recv ZSGSRD 30810
17-03-18 04:33:14.834 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.834 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.834 -07 000000569 INF: FPGA: Recv ZSGSRD 30817
17-03-18 04:33:14.844 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:14.844 -07 000000618 INF: FPGA: Recv ZSGSRD 30824
17-03-18 04:33:14.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.854 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:14.854 -07 000000590 INF: FPGA: Recv ZPIEZORD 26585
17-03-18 04:33:14.864 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:14.864 -07 000000502 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.3 V.
17-03-18 04:33:14.864 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30817 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30817 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30810 (-137.5 uncal um), Max = 30824 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:33:14.864 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30817, posNoise = 7, negNoise = 7
17-03-18 04:33:14.864 -07 000000502 INF: Z Motor: After move to -0.138297, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:14.864 -07 000000502 INF: Z Motor: Settle wait time = 2371 ms, measure time = 105 ms (allowed 150 ms), total time = 2476 ms
17-03-18 04:33:14.864 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:14.914 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2531 ms
17-03-18 04:33:14.914 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:14.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:14.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:14.914 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:14.914 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:14.914 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:14.914 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:14.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:33:14.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:14.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:14.924 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:14.934 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:14.934 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:33:14.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:14.984 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:15.284 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:15.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:15.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:15.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 04:33:15.324 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:15.324 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:15.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 04:33:15.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:33:15.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:15.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:33:15.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:33:15.424 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:15.424 -07 000000569 INF: Autofocus start
17-03-18 04:33:15.424 -07 000000569 INF: MeasureProfile start
17-03-18 04:33:15.424 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:15.434 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:15.434 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:15.434 -07 000000569 INF: MeasureProfile done
17-03-18 04:33:15.434 -07 000000569 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:33:15.434 -07 000000569 INF: Autofocus finished
17-03-18 04:33:15.634 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:15.634 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:15.634 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138298297583782. ----------
17-03-18 04:33:15.644 -07 000000610 INF: Cycle	126	Tile	4	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:15.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28752, sync = True, waitForSettling = True)
17-03-18 04:33:15.644 -07 000000610 INF: Z Motor: Moving to -0.131618 mm, started at -0.138298 mm, distance = 6.68 um
17-03-18 04:33:15.644 -07 000000610 INF: FPGA: Xmit ZDACW 28752\n [Z Motor]
17-03-18 04:33:15.644 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:33:15.654 -07 000000610 INF: FPGA: 'ZDACW 28752' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:33:15.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:15.654 -07 000000502 INF: FPGA: Recv ZDACR 28752
17-03-18 04:33:15.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.814 -07 000000382 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:33:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.824 -07 000000502 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:33:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.834 -07 000000382 INF: FPGA: Recv ZSGSRD 29779
17-03-18 04:33:15.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:33:15.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.854 -07 000000502 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:33:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.864 -07 000000569 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:33:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29785
17-03-18 04:33:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.884 -07 000000569 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:33:15.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.894 -07 000000502 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:33:15.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:15.904 -07 000000569 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:33:15.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:15.914 -07 000000382 INF: FPGA: Recv ZPIEZORD 25183
17-03-18 04:33:15.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:15.924 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -10.1 V.
17-03-18 04:33:15.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29778 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29778 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29774 (-130.8 uncal um), Max = 29785 (-130.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:33:15.924 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29778, posNoise = 7, negNoise = 4
17-03-18 04:33:15.924 -07 000000610 INF: Z Motor: After move to -0.131618, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:15.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:33:15.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:15.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:15.924 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:15.924 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:15.924 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:15.924 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:15.924 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:15.924 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:15.924 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:15.924 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:15.924 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:15.924 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:15.934 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:15.934 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:15.934 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:15.934 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:15.934 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:33:15.934 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:33:15.944 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:33:15.944 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:33:15.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28929 150\n [Camera]
17-03-18 04:33:16.144 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:16.564 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:16.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:16.564 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:16.564 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:16.564 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:33:16.564 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:16.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:16.574 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:16.574 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:16.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:33:16.684 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:16.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:16.754 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28929 807
17-03-18 04:33:16.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:16.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:33:16.944 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:33:16.944 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:16.954 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:16.954 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:33:16.954 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:33:16.954 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:16.954 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:33:16.964 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:16.964 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:33:17.114 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:17.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:17.114 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:17.234 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:17.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:17.234 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:17.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:17.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:33:17.244 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:17.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:33:17.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:17.304 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:17.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28929 150' command took 2 ms to send, 1354 ms to get response, and 1360 ms overall
17-03-18 04:33:17.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:17.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131623541168493. ------
17-03-18 04:33:17.314 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:17.314 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13838 mm
17-03-18 04:33:17.314 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:17.314 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:17.314 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:33:17.314 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 04:33:17.314 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30230, sync = True, waitForSettling = False)
17-03-18 04:33:17.314 -07 000000590 INF: Z Motor: Moving to -0.138384 mm, started at -0.131624 mm, distance = -6.76 um
17-03-18 04:33:17.324 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:17.324 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:17.324 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:33:17.334 -07 000000590 INF: FPGA: Xmit ZDACW 30230\n [Z Motor]
17-03-18 04:33:17.334 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:33:17.334 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:17.334 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:17.334 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:33:17.334 -07 000000512 INF: Y Motor: Moving 1339 steps-15
17-03-18 04:33:17.344 -07 000000590 INF: FPGA: 'ZDACW 30230' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:33:17.344 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:17.354 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:17.364 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:17.364 -07 000000581 INF: FPGA: Recv ZDACR 30230
17-03-18 04:33:17.374 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:33:17.374 -07 000000590 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:33:17.544 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:17.544 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:33:17.634 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:33:17.634 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:33:17.634 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:17.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:33:17.634 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:33:17.634 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:17.644 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:17.644 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 04:33:17.644 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:17.654 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:33:17.724 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:33:17.724 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 394 ms overall
17-03-18 04:33:17.774 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:17.774 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:33:17.784 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:33:17.784 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:17.784 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:33:17.784 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-18 04:33:18.704 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.001704,
17-03-18 04:33:18.734 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:18.734 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:33:18.744 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:18.744 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:18.774 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:18.774 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:18.774 -07 000000512 INF: Y Motor: Moved to 63.2241 after 1458 ms (table move)
17-03-18 04:33:18.774 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138384 mm (DAC = 30230)
17-03-18 04:33:18.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.774 -07 000000424 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:33:18.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:33:18.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.784 -07 000000626 INF: FPGA: Recv ZSGSRD 30830
17-03-18 04:33:18.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.794 -07 000000606 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:33:18.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.804 -07 000000626 INF: FPGA: Recv ZSGSRD 30833
17-03-18 04:33:18.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.814 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.814 -07 000000424 INF: FPGA: Recv ZSGSRD 30840
17-03-18 04:33:18.824 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.824 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30835
17-03-18 04:33:18.834 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.834 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.834 -07 000000606 INF: FPGA: Recv ZSGSRD 30830
17-03-18 04:33:18.844 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.844 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.844 -07 000000618 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:33:18.854 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.854 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.854 -07 000000618 INF: FPGA: Recv ZSGSRD 30826
17-03-18 04:33:18.864 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.864 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:18.864 -07 000000424 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:33:18.874 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.874 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:18.874 -07 000000626 INF: FPGA: Recv ZPIEZORD 26583
17-03-18 04:33:18.884 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:18.884 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.3 V.
17-03-18 04:33:18.884 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30831 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30831 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30840 (-137.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:33:18.884 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30831, posNoise = 9, negNoise = 8
17-03-18 04:33:18.884 -07 000000382 INF: Z Motor: After move to -0.138384, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:18.884 -07 000000382 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:33:18.884 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:18.934 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:33:18.934 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:18.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:18.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:18.934 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:18.934 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:18.934 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:18.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:18.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:18.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:18.944 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:18.944 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:18.944 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:18.944 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:33:18.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:18.994 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:19.294 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:19.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:19.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:19.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 04:33:19.334 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:19.334 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:19.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 04:33:19.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 04:33:19.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:19.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:33:19.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 04:33:19.434 -07 000000626 INF: Autofocus start
17-03-18 04:33:19.434 -07 000000626 INF: MeasureProfile start
17-03-18 04:33:19.434 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:19.444 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:19.444 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:33:19.444 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:19.464 -07 000000626 INF: MeasureProfile done
17-03-18 04:33:19.464 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:33:19.464 -07 000000626 INF: Autofocus finished
17-03-18 04:33:19.644 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:19.644 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:33:19.644 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138388236553767. ----------
17-03-18 04:33:19.654 -07 000000610 INF: Cycle	126	Tile	5	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:19.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28724, sync = True, waitForSettling = True)
17-03-18 04:33:19.654 -07 000000610 INF: Z Motor: Moving to -0.131490 mm, started at -0.138388 mm, distance = 6.90 um
17-03-18 04:33:19.654 -07 000000610 INF: FPGA: Xmit ZDACW 28724\n [Z Motor]
17-03-18 04:33:19.654 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:33:19.664 -07 000000610 INF: FPGA: 'ZDACW 28724' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:19.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:19.664 -07 000000424 INF: FPGA: Recv ZDACR 28724
17-03-18 04:33:19.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:19.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.824 -07 000000502 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:33:19.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:19.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:33:19.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.844 -07 000000502 INF: FPGA: Recv ZSGSRD 29756
17-03-18 04:33:19.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.854 -07 000000618 INF: FPGA: Recv ZSGSRD 29751
17-03-18 04:33:19.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.864 -07 000000502 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:33:19.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29755
17-03-18 04:33:19.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29758
17-03-18 04:33:19.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.894 -07 000000382 INF: FPGA: Recv ZSGSRD 29760
17-03-18 04:33:19.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.904 -07 000000618 INF: FPGA: Recv ZSGSRD 29757
17-03-18 04:33:19.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:19.914 -07 000000626 INF: FPGA: Recv ZSGSRD 29760
17-03-18 04:33:19.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:19.924 -07 000000606 INF: FPGA: Recv ZPIEZORD 25178
17-03-18 04:33:19.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:19.934 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -10.0 V.
17-03-18 04:33:19.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29758 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29759 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29751 (-130.7 uncal um), Max = 29762 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:33:19.934 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29758, posNoise = 4, negNoise = 7
17-03-18 04:33:19.934 -07 000000610 INF: Z Motor: After move to -0.131490, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:19.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:33:19.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:19.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:19.934 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:19.934 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:19.934 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:19.934 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:19.934 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:19.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:19.934 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:33:19.934 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:19.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:19.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:19.944 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:19.944 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:19.944 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:19.944 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:19.944 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:33:19.954 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:19.954 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:33:19.954 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:33:19.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28901 150\n [Camera]
17-03-18 04:33:20.154 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:20.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:20.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:20.574 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:20.574 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:20.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:33:20.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:20.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:20.574 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:20.574 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:20.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:33:20.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28901 807
17-03-18 04:33:20.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:20.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:33:20.974 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:33:20.974 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:20.984 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:20.984 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:33:20.984 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:33:20.984 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:33:20.984 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:20.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:20.994 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:33:21.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:21.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:21.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:21.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:21.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:21.234 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:21.234 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:21.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:33:21.234 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:21.234 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:33:21.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:21.314 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:21.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28901 150' command took 2 ms to send, 1352 ms to get response, and 1360 ms overall
17-03-18 04:33:21.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:21.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131495056925658. ------
17-03-18 04:33:21.314 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:21.314 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13761 mm
17-03-18 04:33:21.314 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:21.324 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:33:21.324 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:21.324 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:33:21.324 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 04:33:21.324 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:21.324 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30061, sync = True, waitForSettling = False)
17-03-18 04:33:21.324 -07 000000502 INF: Z Motor: Moving to -0.137610 mm, started at -0.131495 mm, distance = -6.12 um
17-03-18 04:33:21.324 -07 000000455 INF: FPGA: Recv YRDPOS 129484
17-03-18 04:33:21.334 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:33:21.334 -07 000000626 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:21.334 -07 000000502 INF: FPGA: Xmit ZDACW 30061\n [Z Motor]
17-03-18 04:33:21.334 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:33:21.334 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:21.334 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:33:21.344 -07 000000502 INF: FPGA: 'ZDACW 30061' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:33:21.344 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:21.354 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:21.364 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:21.364 -07 000000455 INF: FPGA: Recv ZDACR 30061
17-03-18 04:33:21.374 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:33:21.374 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:33:21.544 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:21.544 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 04:33:21.614 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:33:21.614 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:33:21.614 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:21.624 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:21.624 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:33:21.624 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:33:21.624 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:21.634 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:33:21.634 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:21.634 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 04:33:21.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:21.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:21.724 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 04:33:21.724 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 391 ms overall
17-03-18 04:33:21.774 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:21.774 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:33:21.784 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:33:21.784 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:21.784 -07 000000626 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 04:33:21.784 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.144 mm/sec
17-03-18 04:33:22.734 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:22.734 -07 000000012 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:33:22.744 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:22.744 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:22.764 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:22.764 -07 000000626 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:22.764 -07 000000626 INF: Y Motor: Moved to 64.0571 after 1444 ms (table move)
17-03-18 04:33:22.764 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137610 mm (DAC = 30061)
17-03-18 04:33:22.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30717
17-03-18 04:33:22.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 04:33:22.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30712
17-03-18 04:33:22.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:33:22.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.784 -07 000000502 INF: FPGA: Recv ZSGSRD 30710
17-03-18 04:33:22.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30706
17-03-18 04:33:22.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.804 -07 000000012 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:33:22.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.814 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.814 -07 000000012 INF: FPGA: Recv ZSGSRD 30716
17-03-18 04:33:22.824 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.824 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.824 -07 000000502 INF: FPGA: Recv ZSGSRD 30715
17-03-18 04:33:22.834 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.834 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.834 -07 000000502 INF: FPGA: Recv ZSGSRD 30704
17-03-18 04:33:22.844 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.844 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.844 -07 000000502 INF: FPGA: Recv ZSGSRD 30708
17-03-18 04:33:22.854 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.854 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:22.854 -07 000000467 INF: FPGA: Recv ZSGSRD 30709
17-03-18 04:33:22.864 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.864 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:22.864 -07 000000012 INF: FPGA: Recv ZPIEZORD 26426
17-03-18 04:33:22.874 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:22.874 -07 000000382 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.4 V.
17-03-18 04:33:22.874 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30711 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30710 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30704 (-136.8 uncal um), Max = 30717 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:33:22.874 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30711, posNoise = 6, negNoise = 7
17-03-18 04:33:22.874 -07 000000382 INF: Z Motor: After move to -0.137610, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:22.874 -07 000000382 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms
17-03-18 04:33:22.874 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:22.924 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 04:33:22.924 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:22.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:22.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:22.924 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:22.924 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:22.924 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:22.924 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:22.934 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:22.934 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:22.934 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:22.934 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:22.944 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:22.944 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:33:22.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:23.004 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:23.304 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:23.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:23.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:23.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 04:33:23.344 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:23.344 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:23.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 399 ms overall
17-03-18 04:33:23.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:33:23.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:23.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:23.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:33:23.444 -07 000000012 INF: Autofocus start
17-03-18 04:33:23.444 -07 000000012 INF: MeasureProfile start
17-03-18 04:33:23.444 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:23.444 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:23.454 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:23.454 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:23.454 -07 000000012 INF: MeasureProfile done
17-03-18 04:33:23.454 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:23.454 -07 000000012 INF: Autofocus finished
17-03-18 04:33:23.654 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:23.654 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:23.654 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137617331096756. ----------
17-03-18 04:33:23.654 -07 000000610 INF: Cycle	126	Tile	6	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:23.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28568, sync = True, waitForSettling = True)
17-03-18 04:33:23.664 -07 000000610 INF: Z Motor: Moving to -0.130776 mm, started at -0.137617 mm, distance = 6.84 um
17-03-18 04:33:23.664 -07 000000610 INF: FPGA: Xmit ZDACW 28568\n [Z Motor]
17-03-18 04:33:23.664 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:33:23.674 -07 000000610 INF: FPGA: 'ZDACW 28568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:23.674 -07 000000462 INF: FPGA: Recv ZDACR 28568
17-03-18 04:33:23.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:23.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.834 -07 000000462 INF: FPGA: Recv ZSGSRD 29645
17-03-18 04:33:23.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:23.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.844 -07 000000626 INF: FPGA: Recv ZSGSRD 29645
17-03-18 04:33:23.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.854 -07 000000480 INF: FPGA: Recv ZSGSRD 29649
17-03-18 04:33:23.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.864 -07 000000626 INF: FPGA: Recv ZSGSRD 29646
17-03-18 04:33:23.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.874 -07 000000626 INF: FPGA: Recv ZSGSRD 29645
17-03-18 04:33:23.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29648
17-03-18 04:33:23.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29648
17-03-18 04:33:23.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29649
17-03-18 04:33:23.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.914 -07 000000462 INF: FPGA: Recv ZSGSRD 29650
17-03-18 04:33:23.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:23.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29645
17-03-18 04:33:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:23.934 -07 000000424 INF: FPGA: Recv ZPIEZORD 25065
17-03-18 04:33:23.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:23.944 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -10.0 V.
17-03-18 04:33:23.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29647 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29647 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29645 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:33:23.944 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29647, posNoise = 3, negNoise = 2
17-03-18 04:33:23.944 -07 000000610 INF: Z Motor: After move to -0.130776, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:23.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:33:23.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:23.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:23.944 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:23.944 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:23.944 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:23.944 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:23.944 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:23.944 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:23.944 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:23.944 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:23.944 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:23.944 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:23.954 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:23.954 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:23.954 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:23.954 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:23.964 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:33:23.964 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:33:23.964 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:33:23.964 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:33:23.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28745 150\n [Camera]
17-03-18 04:33:24.074 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.026244,
17-03-18 04:33:24.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:24.594 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:24.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:24.594 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:24.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:24.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:24.594 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:24.604 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:24.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:33:24.604 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:24.604 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:33:24.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28745 807
17-03-18 04:33:24.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:24.994 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:33:24.994 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:33:24.994 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:24.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:33:24.994 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:33:24.994 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:24.994 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:24.994 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:33:24.994 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:25.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:33:25.134 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:25.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:25.134 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:25.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:25.144 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:25.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:25.144 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-18 04:33:25.144 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:25.144 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:25.144 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1474691344, 0x0, 418435064) start.
17-03-18 04:33:25.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:25.324 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:25.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28745 150' command took 2 ms to send, 1347 ms to get response, and 1359 ms overall
17-03-18 04:33:25.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:25.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130781969377922. ------
17-03-18 04:33:25.334 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:25.334 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13730 mm
17-03-18 04:33:25.334 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:25.334 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:33:25.334 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 04:33:25.334 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:25.334 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29993, sync = True, waitForSettling = False)
17-03-18 04:33:25.334 -07 000000569 INF: Z Motor: Moving to -0.137299 mm, started at -0.130782 mm, distance = -6.52 um
17-03-18 04:33:25.344 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:25.344 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:25.344 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:33:25.354 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:33:25.354 -07 000000569 INF: FPGA: Xmit ZDACW 29993\n [Z Motor]
17-03-18 04:33:25.354 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:25.354 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:25.354 -07 000000480 INF: Y Motor: Moving 1337 steps-11
17-03-18 04:33:25.474 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:25.474 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:33:25.474 -07 000000569 INF: FPGA: 'ZDACW 29993' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 04:33:25.484 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:25.484 -07 000000502 INF: FPGA: Recv ZDACR 29993
17-03-18 04:33:25.494 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:25.494 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:33:25.494 -07 000000569 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-18 04:33:25.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:33:25.544 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:33:25.544 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:25.544 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1474691344, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:33:25.544 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:33:25.544 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:25.544 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:25.544 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:33:25.544 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:25.554 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:33:25.684 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:25.684 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 339 ms overall
17-03-18 04:33:25.864 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:33:25.864 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 517 ms overall
17-03-18 04:33:25.914 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:25.914 -07 000000487 INF: FPGA: Recv YRDPOS 132872
17-03-18 04:33:25.924 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:33:25.924 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:25.924 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:33:25.924 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 517 ms, distance = 0.835 mm, average velocity = 1.616 mm/sec
17-03-18 04:33:26.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:26.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:26.874 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:26.874 -07 000000606 INF: FPGA: Recv YRDPOS 132872
17-03-18 04:33:26.884 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.884 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:26.914 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:26.914 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:26.914 -07 000000480 INF: Y Motor: Moved to 64.8789 after 1573 ms (table move)
17-03-18 04:33:26.914 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137299 mm (DAC = 29993)
17-03-18 04:33:26.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.914 -07 000000447 INF: FPGA: Recv ZSGSRD 30666
17-03-18 04:33:26.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:26.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.924 -07 000000424 INF: FPGA: Recv ZSGSRD 30660
17-03-18 04:33:26.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.934 -07 000000618 INF: FPGA: Recv ZSGSRD 30665
17-03-18 04:33:26.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.944 -07 000000502 INF: FPGA: Recv ZSGSRD 30666
17-03-18 04:33:26.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.954 -07 000000462 INF: FPGA: Recv ZSGSRD 30671
17-03-18 04:33:26.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.964 -07 000000502 INF: FPGA: Recv ZSGSRD 30665
17-03-18 04:33:26.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.974 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.974 -07 000000581 INF: FPGA: Recv ZSGSRD 30657
17-03-18 04:33:26.984 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:26.984 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.984 -07 000000455 INF: FPGA: Recv ZSGSRD 30662
17-03-18 04:33:26.994 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:26.994 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:26.994 -07 000000487 INF: FPGA: Recv ZSGSRD 30658
17-03-18 04:33:27.004 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:27.004 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:27.004 -07 000000382 INF: FPGA: Recv ZSGSRD 30660
17-03-18 04:33:27.014 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:27.014 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:27.014 -07 000000590 INF: FPGA: Recv ZPIEZORD 26420
17-03-18 04:33:27.024 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:27.024 -07 000000461 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.3 V.
17-03-18 04:33:27.024 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30663 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30671 (-136.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:27.024 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30663, posNoise = 8, negNoise = 6
17-03-18 04:33:27.024 -07 000000461 INF: Z Motor: After move to -0.137299, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:27.024 -07 000000461 INF: Z Motor: Settle wait time = 1577 ms, measure time = 106 ms (allowed 150 ms), total time = 1683 ms
17-03-18 04:33:27.024 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:27.074 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 04:33:27.074 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:27.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:27.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:27.074 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:27.074 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:27.074 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:27.074 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:27.074 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:27.074 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:27.074 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:27.084 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:27.094 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:33:27.094 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:33:27.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:27.144 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:33:27.444 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:33:27.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:33:27.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:27.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:27.484 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:27.484 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:27.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:33:27.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:33:27.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:27.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:27.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:33:27.584 -07 000000590 INF: Autofocus start
17-03-18 04:33:27.584 -07 000000590 INF: MeasureProfile start
17-03-18 04:33:27.584 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:27.584 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:27.594 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:27.594 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:27.594 -07 000000590 INF: MeasureProfile done
17-03-18 04:33:27.594 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:27.594 -07 000000590 INF: Autofocus finished
17-03-18 04:33:27.794 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:27.794 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:27.794 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137308968913951. ----------
17-03-18 04:33:27.804 -07 000000610 INF: Cycle	126	Tile	7	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:27.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28500, sync = True, waitForSettling = True)
17-03-18 04:33:27.804 -07 000000610 INF: Z Motor: Moving to -0.130465 mm, started at -0.137309 mm, distance = 6.84 um
17-03-18 04:33:27.804 -07 000000610 INF: FPGA: Xmit ZDACW 28500\n [Z Motor]
17-03-18 04:33:27.804 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:33:27.814 -07 000000610 INF: FPGA: 'ZDACW 28500' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:33:27.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:27.814 -07 000000618 INF: FPGA: Recv ZDACR 28500
17-03-18 04:33:27.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:27.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:27.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:27.974 -07 000000606 INF: FPGA: Recv ZSGSRD 29599
17-03-18 04:33:27.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:27.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:27.984 -07 000000581 INF: FPGA: Recv ZSGSRD 29603
17-03-18 04:33:27.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:27.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:27.994 -07 000000618 INF: FPGA: Recv ZSGSRD 29596
17-03-18 04:33:28.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.004 -07 000000512 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:33:28.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.014 -07 000000618 INF: FPGA: Recv ZSGSRD 29604
17-03-18 04:33:28.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.024 -07 000000512 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:33:28.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.034 -07 000000618 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:33:28.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.044 -07 000000512 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:33:28.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.054 -07 000000618 INF: FPGA: Recv ZSGSRD 29599
17-03-18 04:33:28.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:28.064 -07 000000512 INF: FPGA: Recv ZSGSRD 29602
17-03-18 04:33:28.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:28.074 -07 000000512 INF: FPGA: Recv ZPIEZORD 25008
17-03-18 04:33:28.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:28.084 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -10.1 V.
17-03-18 04:33:28.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29598 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29598 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29593 (-129.7 uncal um), Max = 29604 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:33:28.084 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29598, posNoise = 6, negNoise = 5
17-03-18 04:33:28.084 -07 000000610 INF: Z Motor: After move to -0.130465, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:28.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:33:28.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:28.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:28.084 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:28.084 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:28.084 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:28.084 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:28.084 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:28.084 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:28.084 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:28.084 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:28.084 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:28.084 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:28.094 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:28.094 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:28.094 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:28.094 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:28.104 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:33:28.104 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:33:28.104 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:33:28.104 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:33:28.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28677 150\n [Camera]
17-03-18 04:33:28.304 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:28.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:28.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:28.734 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:28.734 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:28.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:28.734 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:28.734 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:28.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:33:28.734 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:28.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:33:29.114 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:33:29.114 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:33:29.114 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:29.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:33:29.114 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:33:29.114 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:29.114 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:29.114 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:33:29.114 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:29.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:33:29.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28677 807
17-03-18 04:33:29.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:29.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:29.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:29.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:29.274 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:29.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:29.274 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:29.274 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:29.274 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:33:29.284 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:29.284 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:33:29.444 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.999021,
17-03-18 04:33:29.464 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:29.464 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:29.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28677 150' command took 2 ms to send, 1347 ms to get response, and 1360 ms overall
17-03-18 04:33:29.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:29.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130467182982976. ------
17-03-18 04:33:29.474 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13719 mm
17-03-18 04:33:29.474 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:29.474 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29970, sync = True, waitForSettling = False)
17-03-18 04:33:29.474 -07 000000487 INF: Z Motor: Moving to -0.137194 mm, started at -0.130467 mm, distance = -6.73 um
17-03-18 04:33:29.474 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:33:29.474 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 04:33:29.484 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:29.484 -07 000000447 INF: FPGA: Recv YRDPOS 132872
17-03-18 04:33:29.494 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:29.494 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:33:29.494 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:29.494 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:29.494 -07 000000502 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:33:29.494 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:29.504 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:33:29.504 -07 000000487 INF: FPGA: Xmit ZDACW 29970\n [Z Motor]
17-03-18 04:33:29.504 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:33:29.514 -07 000000487 INF: FPGA: 'ZDACW 29970' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 04:33:29.514 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:29.524 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:29.534 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:29.534 -07 000000447 INF: FPGA: Recv ZDACR 29970
17-03-18 04:33:29.544 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:33:29.544 -07 000000487 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 04:33:29.684 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:33:29.684 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:33:29.684 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:29.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:33:29.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:33:29.684 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:29.684 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:29.684 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:29.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:33:29.694 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:33:29.724 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:29.724 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:33:29.884 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:33:29.884 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:33:29.934 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:29.944 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:33:29.944 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 04:33:29.944 -07 000000502 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:29.944 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:33:29.944 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-18 04:33:30.894 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:30.894 -07 000000461 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:33:30.904 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:30.904 -07 000000502 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:30.934 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:30.934 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:30.934 -07 000000502 INF: Y Motor: Moved to 65.7139 after 1458 ms (table move)
17-03-18 04:33:30.944 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137194 mm (DAC = 29970)
17-03-18 04:33:30.944 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:30.944 -07 000000012 INF: FPGA: Recv ZSGSRD 30644
17-03-18 04:33:30.954 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:30.954 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:30.954 -07 000000012 INF: FPGA: Recv ZSGSRD 30649
17-03-18 04:33:30.964 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:30.964 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:30.964 -07 000000012 INF: FPGA: Recv ZSGSRD 30648
17-03-18 04:33:30.974 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:30.974 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:30.974 -07 000000012 INF: FPGA: Recv ZSGSRD 30653
17-03-18 04:33:30.984 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:30.984 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:30.984 -07 000000012 INF: FPGA: Recv ZSGSRD 30644
17-03-18 04:33:30.994 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:30.994 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:30.994 -07 000000012 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:33:31.004 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:31.004 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:31.004 -07 000000012 INF: FPGA: Recv ZSGSRD 30646
17-03-18 04:33:31.014 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:31.014 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:31.014 -07 000000012 INF: FPGA: Recv ZSGSRD 30644
17-03-18 04:33:31.024 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:31.024 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:31.024 -07 000000012 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:33:31.034 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:31.034 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:31.034 -07 000000012 INF: FPGA: Recv ZSGSRD 30649
17-03-18 04:33:31.044 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:31.044 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:31.044 -07 000000487 INF: FPGA: Recv ZPIEZORD 26389
17-03-18 04:33:31.054 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:31.054 -07 000000480 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.4 V.
17-03-18 04:33:31.054 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30648 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30648 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30644 (-136.4 uncal um), Max = 30653 (-136.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:33:31.054 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30648, posNoise = 5, negNoise = 4
17-03-18 04:33:31.054 -07 000000480 INF: Z Motor: After move to -0.137194, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:31.054 -07 000000480 INF: Z Motor: Settle wait time = 1463 ms, measure time = 110 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:33:31.054 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:31.094 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:33:31.094 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:31.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:31.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:31.094 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:31.094 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:31.094 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:31.094 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:31.094 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:31.094 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:31.104 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:31.104 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:31.104 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:33:31.104 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:33:31.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:31.154 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:31.454 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:31.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:31.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:31.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1425127184, 0x0, 559484976) start.
17-03-18 04:33:31.494 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:31.494 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:31.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:33:31.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1425127184, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:33:31.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:31.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:33:31.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:33:31.594 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:32.324 -07 000000382 INF: Autofocus start
17-03-18 04:33:32.324 -07 000000382 INF: MeasureProfile start
17-03-18 04:33:32.334 -07 000000382 INF: MeasureProfile done
17-03-18 04:33:32.334 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:32.334 -07 000000382 INF: Autofocus finished
17-03-18 04:33:32.334 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:32.334 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:32.334 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 735 ms to get response, and 740 ms overall
17-03-18 04:33:32.334 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:32.334 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:32.534 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:32.534 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 04:33:32.544 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137212605731825. ----------
17-03-18 04:33:32.544 -07 000000610 INF: Cycle	126	Tile	8	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:32.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28477, sync = True, waitForSettling = True)
17-03-18 04:33:32.544 -07 000000610 INF: Z Motor: Moving to -0.130359 mm, started at -0.137213 mm, distance = 6.85 um
17-03-18 04:33:32.544 -07 000000610 INF: FPGA: Xmit ZDACW 28477\n [Z Motor]
17-03-18 04:33:32.554 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:33:32.554 -07 000000610 INF: FPGA: 'ZDACW 28477' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:33:32.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:32.554 -07 000000480 INF: FPGA: Recv ZDACR 28477
17-03-18 04:33:32.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:32.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.714 -07 000000480 INF: FPGA: Recv ZSGSRD 29584
17-03-18 04:33:32.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:32.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.724 -07 000000480 INF: FPGA: Recv ZSGSRD 29585
17-03-18 04:33:32.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.734 -07 000000382 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:33:32.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.744 -07 000000382 INF: FPGA: Recv ZSGSRD 29575
17-03-18 04:33:32.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.754 -07 000000480 INF: FPGA: Recv ZSGSRD 29585
17-03-18 04:33:32.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:32.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.764 -07 000000382 INF: FPGA: Recv ZSGSRD 29586
17-03-18 04:33:32.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.774 -07 000000480 INF: FPGA: Recv ZSGSRD 29578
17-03-18 04:33:32.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.784 -07 000000382 INF: FPGA: Recv ZSGSRD 29583
17-03-18 04:33:32.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.794 -07 000000480 INF: FPGA: Recv ZSGSRD 29575
17-03-18 04:33:32.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:32.804 -07 000000382 INF: FPGA: Recv ZSGSRD 29579
17-03-18 04:33:32.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:32.814 -07 000000382 INF: FPGA: Recv ZPIEZORD 24997
17-03-18 04:33:32.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:32.824 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -10.1 V.
17-03-18 04:33:32.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29581 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29575 (-129.5 uncal um), Max = 29586 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:32.824 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29581, posNoise = 5, negNoise = 6
17-03-18 04:33:32.824 -07 000000610 INF: Z Motor: After move to -0.130359, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:32.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 04:33:32.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:32.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:32.824 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:32.824 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:32.824 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:32.824 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:32.824 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:32.824 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:32.834 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:33:32.834 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:32.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:32.834 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:32.834 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:32.834 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:32.834 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:32.834 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:32.844 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:33:32.844 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:33:32.844 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:33:32.844 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:33:32.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28654 150\n [Camera]
17-03-18 04:33:33.044 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:33:33.464 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:33.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:33.464 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:33.464 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:33.464 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:33:33.474 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:33.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:33.474 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:33.474 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:33.474 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:33:33.664 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28654 807
17-03-18 04:33:33.804 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:33.864 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:33:33.864 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:33:33.864 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:33.874 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:33.874 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:33:33.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:33:33.874 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:33:33.874 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:33.874 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:33.884 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:33:34.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:34.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:34.014 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:34.014 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:34.014 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:33:34.014 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:34.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:34.014 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:34.014 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:34.014 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:33:34.204 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:34.204 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:34.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28654 150' command took 2 ms to send, 1355 ms to get response, and 1360 ms overall
17-03-18 04:33:34.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:34.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130357971376566. ------
17-03-18 04:33:34.324 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13678 mm
17-03-18 04:33:34.324 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:34.334 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:34.334 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:34.334 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:33:34.334 -07 000000467 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 04:33:34.334 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29879, sync = True, waitForSettling = False)
17-03-18 04:33:34.334 -07 000000569 INF: Z Motor: Moving to -0.136777 mm, started at -0.130358 mm, distance = -6.42 um
17-03-18 04:33:34.344 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:34.344 -07 000000569 INF: FPGA: Xmit ZDACW 29879\n [Z Motor]
17-03-18 04:33:34.344 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:33:34.354 -07 000000569 INF: FPGA: 'ZDACW 29879' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:33:34.354 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:34.354 -07 000000461 INF: FPGA: Recv YRDPOS 134583
17-03-18 04:33:34.364 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:34.364 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:33:34.364 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:34.364 -07 000000467 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:34.364 -07 000000467 INF: Y Motor: Moving 1341 steps-18
17-03-18 04:33:34.374 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:34.374 -07 000000447 INF: FPGA: Recv ZDACR 29879
17-03-18 04:33:34.384 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:33:34.384 -07 000000569 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:33:34.384 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:34.414 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:33:34.414 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:33:34.414 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:34.414 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:33:34.414 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:33:34.414 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:34.424 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:34.424 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:33:34.424 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:33:34.434 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:33:34.564 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:34.564 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:33:34.754 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:33:34.754 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 393 ms overall
17-03-18 04:33:34.804 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.99219,
17-03-18 04:33:34.824 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:34.824 -07 000000618 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:33:34.834 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:33:34.834 -07 000000467 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:34.834 -07 000000467 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:33:34.834 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-18 04:33:35.784 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:35.784 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:33:35.794 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:35.794 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:35.824 -07 000000467 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:35.824 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:33:35.824 -07 000000467 INF: Y Motor: Moved to 66.5391 after 1489 ms (table move)
17-03-18 04:33:35.824 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136777 mm (DAC = 29879)
17-03-18 04:33:35.824 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.824 -07 000000581 INF: FPGA: Recv ZSGSRD 30583
17-03-18 04:33:36.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:36.824 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 991 ms to get response, and 994 ms overall
17-03-18 04:33:36.824 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:36.824 -07 000000569 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:33:36.834 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:36.834 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.834 -07 000000447 INF: FPGA: Recv ZSGSRD 30584
17-03-18 04:33:36.844 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.844 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.844 -07 000000569 INF: FPGA: Recv ZSGSRD 30575
17-03-18 04:33:36.854 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.854 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.854 -07 000000447 INF: FPGA: Recv ZSGSRD 30578
17-03-18 04:33:36.864 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.864 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30581
17-03-18 04:33:36.874 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.874 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.874 -07 000000447 INF: FPGA: Recv ZSGSRD 30585
17-03-18 04:33:36.884 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.884 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.884 -07 000000590 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:33:36.894 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.894 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.894 -07 000000447 INF: FPGA: Recv ZSGSRD 30575
17-03-18 04:33:36.904 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.904 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:36.904 -07 000000590 INF: FPGA: Recv ZSGSRD 30576
17-03-18 04:33:36.914 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.914 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:36.914 -07 000000581 INF: FPGA: Recv ZPIEZORD 26377
17-03-18 04:33:36.924 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:36.924 -07 000000480 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.2 V.
17-03-18 04:33:36.924 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30580 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30582 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30575 (-135.9 uncal um), Max = 30585 (-136.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:33:36.924 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30580, posNoise = 5, negNoise = 5
17-03-18 04:33:36.924 -07 000000480 INF: Z Motor: After move to -0.136777, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:36.924 -07 000000480 INF: Z Motor: Settle wait time = 1491 ms, measure time = 1095 ms (allowed 150 ms), total time = 2586 ms
17-03-18 04:33:36.924 -07 000000480 INF: Z Motor: Warning: Actual position measuring time = 1095 ms, longer than max expected time of 150 ms
17-03-18 04:33:36.924 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2591 ms
17-03-18 04:33:36.924 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:36.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:36.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:36.924 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:36.924 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:36.924 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:36.924 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:36.924 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:33:36.934 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:36.934 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:36.934 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:36.944 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:36.944 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:33:36.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:36.984 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:37.284 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:37.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:37.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:37.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:37.324 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:37.324 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:37.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:33:37.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:33:37.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:37.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:37.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:33:37.424 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:37.424 -07 000000447 INF: Autofocus start
17-03-18 04:33:37.424 -07 000000447 INF: MeasureProfile start
17-03-18 04:33:37.424 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:37.434 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:37.434 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:37.434 -07 000000447 INF: MeasureProfile done
17-03-18 04:33:37.434 -07 000000447 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:33:37.434 -07 000000447 INF: Autofocus finished
17-03-18 04:33:37.634 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:37.634 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:37.634 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136775759306185. ----------
17-03-18 04:33:37.634 -07 000000610 INF: Cycle	126	Tile	9	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:37.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28420, sync = True, waitForSettling = True)
17-03-18 04:33:37.644 -07 000000610 INF: Z Motor: Moving to -0.130098 mm, started at -0.136776 mm, distance = 6.68 um
17-03-18 04:33:37.644 -07 000000610 INF: FPGA: Xmit ZDACW 28420\n [Z Motor]
17-03-18 04:33:37.644 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:33:37.654 -07 000000610 INF: FPGA: 'ZDACW 28420' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:37.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:37.654 -07 000000447 INF: FPGA: Recv ZDACR 28420
17-03-18 04:33:37.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.814 -07 000000590 INF: FPGA: Recv ZSGSRD 29547
17-03-18 04:33:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:37.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29543
17-03-18 04:33:37.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.834 -07 000000569 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:33:37.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:33:37.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.854 -07 000000480 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:33:37.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.864 -07 000000447 INF: FPGA: Recv ZSGSRD 29544
17-03-18 04:33:37.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.874 -07 000000480 INF: FPGA: Recv ZSGSRD 29541
17-03-18 04:33:37.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.884 -07 000000569 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:33:37.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.894 -07 000000581 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:33:37.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:37.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29535
17-03-18 04:33:37.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:37.914 -07 000000590 INF: FPGA: Recv ZPIEZORD 24967
17-03-18 04:33:37.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:37.924 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -10.0 V.
17-03-18 04:33:37.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29541 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29542 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29535 (-129.3 uncal um), Max = 29547 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:37.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29541, posNoise = 6, negNoise = 6
17-03-18 04:33:37.924 -07 000000610 INF: Z Motor: After move to -0.130098, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:37.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:33:37.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:37.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:37.934 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:37.934 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:37.934 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:37.934 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:37.934 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:37.934 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:37.934 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:37.934 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:37.934 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:37.934 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:37.934 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:37.934 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:37.934 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:33:37.934 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:37.954 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:33:37.954 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:33:37.954 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:33:37.954 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:33:37.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28597 150\n [Camera]
17-03-18 04:33:38.154 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:38.574 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:38.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:38.574 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:38.584 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:38.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:38.584 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:38.584 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:38.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:33:38.584 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:38.584 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:33:38.764 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28597 807
17-03-18 04:33:38.914 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:38.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:33:38.964 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:33:38.964 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:38.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:33:38.964 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:33:38.964 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:38.974 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:38.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:38.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:33:38.974 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:33:39.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:39.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:39.124 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:39.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:39.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:39.124 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:39.134 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:39.134 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:33:39.134 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:39.134 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:33:39.314 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:33:39.314 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:39.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28597 150' command took 2 ms to send, 1354 ms to get response, and 1360 ms overall
17-03-18 04:33:39.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:39.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130101002890895. ------
17-03-18 04:33:39.314 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:39.324 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13691 mm
17-03-18 04:33:39.324 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:39.324 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:39.324 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:33:39.444 -07 000000618 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 04:33:39.444 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29909, sync = True, waitForSettling = False)
17-03-18 04:33:39.444 -07 000000455 INF: Z Motor: Moving to -0.136915 mm, started at -0.130101 mm, distance = -6.81 um
17-03-18 04:33:39.444 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:39.444 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 04:33:39.444 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:33:39.454 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:39.454 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:39.454 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:39.454 -07 000000618 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:39.454 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:33:39.464 -07 000000455 INF: FPGA: Xmit ZDACW 29909\n [Z Motor]
17-03-18 04:33:39.464 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:33:39.474 -07 000000455 INF: FPGA: 'ZDACW 29909' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:33:39.474 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:39.484 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:39.484 -07 000000569 INF: FPGA: Recv ZDACR 29909
17-03-18 04:33:39.494 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:33:39.494 -07 000000455 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:33:39.534 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:33:39.534 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:33:39.534 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:39.534 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:33:39.534 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:33:39.534 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:39.534 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:39.534 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:33:39.534 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:39.544 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:33:39.654 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:39.654 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 04:33:39.844 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:33:39.844 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:33:39.894 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:39.904 -07 000000447 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:33:39.904 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:33:39.904 -07 000000618 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:39.904 -07 000000618 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:33:39.904 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 04:33:40.174 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.986717,
17-03-18 04:33:40.854 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:40.854 -07 000000487 INF: FPGA: Recv YRDPOS 137978
17-03-18 04:33:40.864 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:40.864 -07 000000618 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:40.894 -07 000000618 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:40.894 -07 000000618 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:33:40.894 -07 000000618 INF: Y Motor: Moved to 67.3721 after 1449 ms (table move)
17-03-18 04:33:40.894 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136915 mm (DAC = 29909)
17-03-18 04:33:40.894 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.894 -07 000000502 INF: FPGA: Recv ZSGSRD 30601
17-03-18 04:33:40.904 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:33:40.904 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.904 -07 000000590 INF: FPGA: Recv ZSGSRD 30611
17-03-18 04:33:40.914 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.914 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.914 -07 000000502 INF: FPGA: Recv ZSGSRD 30607
17-03-18 04:33:40.924 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.924 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.924 -07 000000590 INF: FPGA: Recv ZSGSRD 30602
17-03-18 04:33:40.934 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.934 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.934 -07 000000502 INF: FPGA: Recv ZSGSRD 30601
17-03-18 04:33:40.944 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.944 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.944 -07 000000569 INF: FPGA: Recv ZSGSRD 30602
17-03-18 04:33:40.954 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.954 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.954 -07 000000606 INF: FPGA: Recv ZSGSRD 30600
17-03-18 04:33:40.964 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.964 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.964 -07 000000606 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:33:40.974 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.974 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.974 -07 000000606 INF: FPGA: Recv ZSGSRD 30599
17-03-18 04:33:40.984 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.984 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:40.984 -07 000000606 INF: FPGA: Recv ZSGSRD 30604
17-03-18 04:33:40.994 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:40.994 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:40.994 -07 000000606 INF: FPGA: Recv ZPIEZORD 26407
17-03-18 04:33:41.004 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:41.004 -07 000000480 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.2 V.
17-03-18 04:33:41.004 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30602 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30602 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30596 (-136.1 uncal um), Max = 30611 (-136.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:41.004 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30602, posNoise = 9, negNoise = 6
17-03-18 04:33:41.004 -07 000000480 INF: Z Motor: After move to -0.136915, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:41.004 -07 000000480 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:33:41.004 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:41.054 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1729 ms
17-03-18 04:33:41.054 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:41.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:41.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:41.054 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:41.054 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:41.054 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:41.054 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:41.054 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:33:41.054 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:41.064 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:41.064 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:41.064 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:41.064 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:33:41.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:41.114 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:41.414 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:41.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:41.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:41.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:41.454 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:41.454 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:41.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 04:33:41.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:33:41.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:41.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:41.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:33:41.554 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:41.554 -07 000000606 INF: Autofocus start
17-03-18 04:33:41.554 -07 000000606 INF: MeasureProfile start
17-03-18 04:33:41.554 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:41.564 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:41.564 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:41.564 -07 000000606 INF: MeasureProfile done
17-03-18 04:33:41.564 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:41.564 -07 000000606 INF: Autofocus finished
17-03-18 04:33:41.684 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:41.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:41.764 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:41.764 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:41.774 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136917091973304. ----------
17-03-18 04:33:41.774 -07 000000610 INF: Cycle	126	Tile	10	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:41.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28416, sync = True, waitForSettling = True)
17-03-18 04:33:41.774 -07 000000610 INF: Z Motor: Moving to -0.130080 mm, started at -0.136917 mm, distance = 6.84 um
17-03-18 04:33:41.774 -07 000000610 INF: FPGA: Xmit ZDACW 28416\n [Z Motor]
17-03-18 04:33:41.774 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:33:41.784 -07 000000610 INF: FPGA: 'ZDACW 28416' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:41.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:41.784 -07 000000618 INF: FPGA: Recv ZDACR 28416
17-03-18 04:33:41.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:41.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:41.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:41.944 -07 000000618 INF: FPGA: Recv ZSGSRD 29536
17-03-18 04:33:41.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:41.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:41.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29541
17-03-18 04:33:41.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:41.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:41.964 -07 000000618 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:33:41.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:41.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:41.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:33:41.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:41.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:41.984 -07 000000581 INF: FPGA: Recv ZSGSRD 29538
17-03-18 04:33:41.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:41.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:41.994 -07 000000590 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:33:42.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:42.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:42.004 -07 000000012 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:33:42.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:42.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:42.014 -07 000000590 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:33:42.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:42.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:42.024 -07 000000012 INF: FPGA: Recv ZSGSRD 29543
17-03-18 04:33:42.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:42.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:42.034 -07 000000581 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:33:42.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:42.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:42.044 -07 000000618 INF: FPGA: Recv ZPIEZORD 24971
17-03-18 04:33:42.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:42.054 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -10.0 V.
17-03-18 04:33:42.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29539 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29536 (-129.3 uncal um), Max = 29543 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:33:42.054 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29539, posNoise = 4, negNoise = 3
17-03-18 04:33:42.054 -07 000000610 INF: Z Motor: After move to -0.130080, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:42.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:33:42.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:42.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:42.054 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:42.054 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:42.054 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:42.054 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:42.054 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:42.054 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:42.054 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:33:42.054 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:42.054 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:42.054 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:42.064 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:33:42.064 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:42.064 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:42.064 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:42.074 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:33:42.074 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:33:42.074 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:33:42.074 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:33:42.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28593 150\n [Camera]
17-03-18 04:33:42.274 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:42.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:42.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:42.704 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:42.704 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:42.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:42.704 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:42.704 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:42.704 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:33:42.704 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:42.704 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:33:42.894 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28593 807
17-03-18 04:33:43.044 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:43.104 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:33:43.104 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:33:43.104 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:43.104 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:33:43.104 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:33:43.104 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:43.104 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:43.104 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:33:43.104 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:43.114 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:33:43.244 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1163
17-03-18 04:33:43.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1163
17-03-18 04:33:43.254 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:43.254 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:43.254 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-18 04:33:43.254 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1163
17-03-18 04:33:43.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1163
17-03-18 04:33:43.254 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:43.254 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:43.254 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 04:33:43.434 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:43.434 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:43.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28593 150' command took 2 ms to send, 1348 ms to get response, and 1360 ms overall
17-03-18 04:33:43.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:43.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130088154466612. ------
17-03-18 04:33:43.444 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:43.444 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13650 mm
17-03-18 04:33:43.444 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:43.444 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29818, sync = True, waitForSettling = False)
17-03-18 04:33:43.444 -07 000000012 INF: Z Motor: Moving to -0.136498 mm, started at -0.130088 mm, distance = -6.41 um
17-03-18 04:33:43.444 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:33:43.444 -07 000000581 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 04:33:43.454 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:43.464 -07 000000012 INF: FPGA: Xmit ZDACW 29818\n [Z Motor]
17-03-18 04:33:43.644 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:33:43.644 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:33:43.644 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:43.654 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:33:43.654 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:33:43.654 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:43.654 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:43.654 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:33:43.654 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:33:43.654 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:33:43.674 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:43.674 -07 000000480 INF: FPGA: Recv YRDPOS 137978
17-03-18 04:33:43.674 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:33:43.674 -07 000000012 INF: FPGA: 'ZDACW 29818' command took 0 ms to send, 200 ms to get response, and 221 ms overall
17-03-18 04:33:43.674 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:43.674 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 224 ms overall
17-03-18 04:33:43.674 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 210 ms to get response, and 221 ms overall
17-03-18 04:33:43.674 -07 000000581 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:43.674 -07 000000581 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:43.674 -07 000000581 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:33:43.674 -07 000000480 INF: FPGA: Recv ZDACR 29818
17-03-18 04:33:43.684 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:43.684 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:43.684 -07 000000012 INF: Z Motor: MoveAbsStepped took 231 ms (did NOT wait for settling yet))
17-03-18 04:33:43.694 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:43.884 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:43.884 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 212 ms overall
17-03-18 04:33:44.064 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:33:44.064 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 04:33:44.114 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:44.124 -07 000000461 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:33:44.124 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:33:44.124 -07 000000581 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:44.124 -07 000000581 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 04:33:44.124 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.841 mm, average velocity = 2.123 mm/sec
17-03-18 04:33:45.074 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:45.074 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:33:45.084 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.084 -07 000000581 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:45.114 -07 000000581 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:45.114 -07 000000581 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:45.114 -07 000000581 INF: Y Motor: Moved to 68.2051 after 1662 ms (table move)
17-03-18 04:33:45.114 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136498 mm (DAC = 29818)
17-03-18 04:33:45.114 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.114 -07 000000618 INF: FPGA: Recv ZSGSRD 30544
17-03-18 04:33:45.124 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:45.124 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.124 -07 000000581 INF: FPGA: Recv ZSGSRD 30544
17-03-18 04:33:45.134 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.134 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.134 -07 000000480 INF: FPGA: Recv ZSGSRD 30539
17-03-18 04:33:45.144 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.144 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.144 -07 000000626 INF: FPGA: Recv ZSGSRD 30539
17-03-18 04:33:45.154 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.154 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.154 -07 000000581 INF: FPGA: Recv ZSGSRD 30535
17-03-18 04:33:45.164 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.164 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30537
17-03-18 04:33:45.174 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.174 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.174 -07 000000626 INF: FPGA: Recv ZSGSRD 30532
17-03-18 04:33:45.184 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.184 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.184 -07 000000480 INF: FPGA: Recv ZSGSRD 30535
17-03-18 04:33:45.194 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.194 -07 000000447 INF: FPGA: Recv ZSGSRD 30534
17-03-18 04:33:45.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:45.204 -07 000000480 INF: FPGA: Recv ZSGSRD 30539
17-03-18 04:33:45.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:45.224 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:45.224 -07 000000626 INF: FPGA: Recv ZPIEZORD 26312
17-03-18 04:33:45.234 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:33:45.234 -07 000000512 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.3 V.
17-03-18 04:33:45.234 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30538 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30538 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30532 (-135.7 uncal um), Max = 30544 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:45.234 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30538, posNoise = 6, negNoise = 6
17-03-18 04:33:45.234 -07 000000512 INF: Z Motor: After move to -0.136498, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:45.234 -07 000000512 INF: Z Motor: Settle wait time = 1665 ms, measure time = 117 ms (allowed 150 ms), total time = 1782 ms
17-03-18 04:33:45.234 -07 000000512 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:45.274 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1824 ms
17-03-18 04:33:45.274 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:45.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:45.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:45.274 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:45.274 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:45.274 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:45.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:45.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:45.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:45.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:45.284 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:45.294 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:33:45.294 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:33:45.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:45.344 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:45.534 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.970374,
17-03-18 04:33:45.644 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:45.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:45.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:45.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:33:45.684 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:45.684 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:45.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:33:45.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:33:45.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:45.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:33:45.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:33:45.784 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:45.784 -07 000000626 INF: Autofocus start
17-03-18 04:33:45.784 -07 000000626 INF: MeasureProfile start
17-03-18 04:33:45.784 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:45.794 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:45.794 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:45.794 -07 000000626 INF: MeasureProfile done
17-03-18 04:33:45.794 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:45.794 -07 000000626 INF: Autofocus finished
17-03-18 04:33:45.994 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:45.994 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:45.994 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136505942396231. ----------
17-03-18 04:33:45.994 -07 000000610 INF: Cycle	126	Tile	11	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:46.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28325, sync = True, waitForSettling = True)
17-03-18 04:33:46.004 -07 000000610 INF: Z Motor: Moving to -0.129664 mm, started at -0.136506 mm, distance = 6.84 um
17-03-18 04:33:46.004 -07 000000610 INF: FPGA: Xmit ZDACW 28325\n [Z Motor]
17-03-18 04:33:46.004 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:33:46.014 -07 000000610 INF: FPGA: 'ZDACW 28325' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:46.014 -07 000000512 INF: FPGA: Recv ZDACR 28325
17-03-18 04:33:46.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:46.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.174 -07 000000462 INF: FPGA: Recv ZSGSRD 29477
17-03-18 04:33:46.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:46.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.184 -07 000000590 INF: FPGA: Recv ZSGSRD 29476
17-03-18 04:33:46.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.194 -07 000000382 INF: FPGA: Recv ZSGSRD 29469
17-03-18 04:33:46.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29470
17-03-18 04:33:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.214 -07 000000581 INF: FPGA: Recv ZSGSRD 29481
17-03-18 04:33:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.224 -07 000000487 INF: FPGA: Recv ZSGSRD 29468
17-03-18 04:33:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.234 -07 000000461 INF: FPGA: Recv ZSGSRD 29478
17-03-18 04:33:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.244 -07 000000467 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:33:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.254 -07 000000569 INF: FPGA: Recv ZSGSRD 29475
17-03-18 04:33:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:46.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29476
17-03-18 04:33:46.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:46.274 -07 000000581 INF: FPGA: Recv ZPIEZORD 24911
17-03-18 04:33:46.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:46.284 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.0 V.
17-03-18 04:33:46.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29474 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29481 (-128.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:33:46.284 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29474, posNoise = 7, negNoise = 6
17-03-18 04:33:46.284 -07 000000610 INF: Z Motor: After move to -0.129664, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:46.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:33:46.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:46.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:46.284 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:46.284 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:46.284 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:46.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:46.284 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:46.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:46.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:33:46.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:46.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:46.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:46.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:46.284 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:46.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:46.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:46.304 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:33:46.304 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:33:46.304 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:33:46.304 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:46.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28502 150\n [Camera]
17-03-18 04:33:46.504 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:46.684 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:46.924 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:46.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:46.924 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:46.924 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:46.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start.
17-03-18 04:33:46.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:46.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:46.934 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:46.934 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:46.934 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:33:47.114 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28502 807
17-03-18 04:33:47.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:47.304 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:33:47.304 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:33:47.304 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:47.304 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:33:47.304 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:33:47.304 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:47.314 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:33:47.314 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:33:47.314 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:33:47.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:33:47.474 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:47.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:47.474 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:47.474 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:47.474 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:33:47.474 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:47.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:47.474 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:47.474 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:47.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:33:47.664 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:47.664 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:47.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28502 150' command took 2 ms to send, 1355 ms to get response, and 1359 ms overall
17-03-18 04:33:47.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:47.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129670580677397. ------
17-03-18 04:33:47.794 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:47.794 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13629 mm
17-03-18 04:33:47.794 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:47.804 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:33:47.804 -07 000000467 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 04:33:47.804 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:47.884 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 04:33:47.884 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:33:47.884 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:47.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 409 ms.
17-03-18 04:33:47.884 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:33:47.884 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:47.894 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:47.894 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:33:47.894 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 04:33:47.894 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 04:33:47.904 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:47.904 -07 000000447 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:33:47.904 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 92 ms to get response, and 99 ms overall
17-03-18 04:33:47.904 -07 000000467 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:47.904 -07 000000467 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:47.904 -07 000000467 INF: Y Motor: Moving 1340 steps-15
17-03-18 04:33:47.904 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 102 ms to get response, and 103 ms overall
17-03-18 04:33:47.904 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:47.904 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29772, sync = True, waitForSettling = False)
17-03-18 04:33:47.904 -07 000000447 INF: Z Motor: Moving to -0.136287 mm, started at -0.129671 mm, distance = -6.62 um
17-03-18 04:33:47.914 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:47.924 -07 000000447 INF: FPGA: Xmit ZDACW 29772\n [Z Motor]
17-03-18 04:33:47.924 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:33:47.934 -07 000000447 INF: FPGA: 'ZDACW 29772' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:33:47.934 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:47.934 -07 000000581 INF: FPGA: Recv ZDACR 29772
17-03-18 04:33:47.944 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:47.944 -07 000000447 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:33:48.114 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:48.114 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 04:33:48.284 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:33:48.284 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 04:33:48.334 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:48.334 -07 000000581 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:33:48.344 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:48.344 -07 000000467 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:48.344 -07 000000467 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:33:48.344 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 04:33:49.294 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:49.294 -07 000000447 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:33:49.304 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:49.304 -07 000000467 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:49.334 -07 000000467 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:49.334 -07 000000467 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:49.334 -07 000000467 INF: Y Motor: Moved to 69.0273 after 1528 ms (table move)
17-03-18 04:33:49.334 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136287 mm (DAC = 29772)
17-03-18 04:33:49.334 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.334 -07 000000581 INF: FPGA: Recv ZSGSRD 30505
17-03-18 04:33:49.344 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:49.344 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.344 -07 000000382 INF: FPGA: Recv ZSGSRD 30501
17-03-18 04:33:49.354 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.354 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.354 -07 000000581 INF: FPGA: Recv ZSGSRD 30509
17-03-18 04:33:49.364 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.364 -07 000000382 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:33:49.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.374 -07 000000581 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:33:49.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.384 -07 000000382 INF: FPGA: Recv ZSGSRD 30504
17-03-18 04:33:49.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.394 -07 000000581 INF: FPGA: Recv ZSGSRD 30502
17-03-18 04:33:49.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.404 -07 000000382 INF: FPGA: Recv ZSGSRD 30501
17-03-18 04:33:49.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.414 -07 000000581 INF: FPGA: Recv ZSGSRD 30499
17-03-18 04:33:49.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:49.424 -07 000000382 INF: FPGA: Recv ZSGSRD 30503
17-03-18 04:33:49.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:49.444 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:49.444 -07 000000447 INF: FPGA: Recv ZPIEZORD 26274
17-03-18 04:33:49.454 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:33:49.454 -07 000000424 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.3 V.
17-03-18 04:33:49.454 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30504 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30504 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30499 (-135.5 uncal um), Max = 30509 (-135.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:33:49.454 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30504, posNoise = 5, negNoise = 5
17-03-18 04:33:49.454 -07 000000424 INF: Z Motor: After move to -0.136287, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:49.454 -07 000000424 INF: Z Motor: Settle wait time = 1430 ms, measure time = 117 ms (allowed 150 ms), total time = 1547 ms
17-03-18 04:33:49.454 -07 000000424 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:49.494 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1690 ms
17-03-18 04:33:49.494 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:49.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:49.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:49.494 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:49.494 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:49.494 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:49.494 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:49.494 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:49.494 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:49.494 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:49.494 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:49.504 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:49.504 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:33:49.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:49.554 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:49.854 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:49.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:49.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:49.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:49.894 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:49.894 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:49.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:33:49.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:33:49.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:49.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:49.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:33:49.994 -07 000000424 INF: Autofocus start
17-03-18 04:33:49.994 -07 000000424 INF: MeasureProfile start
17-03-18 04:33:49.994 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:49.994 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:50.004 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:50.004 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:50.004 -07 000000424 INF: MeasureProfile done
17-03-18 04:33:50.004 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:50.004 -07 000000424 INF: Autofocus finished
17-03-18 04:33:50.204 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:50.204 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:50.204 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136287519183411. ----------
17-03-18 04:33:50.204 -07 000000610 INF: Cycle	126	Tile	12	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:50.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = True)
17-03-18 04:33:50.214 -07 000000610 INF: Z Motor: Moving to -0.129453 mm, started at -0.136288 mm, distance = 6.83 um
17-03-18 04:33:50.214 -07 000000610 INF: FPGA: Xmit ZDACW 28279\n [Z Motor]
17-03-18 04:33:50.214 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:33:50.224 -07 000000610 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:50.224 -07 000000487 INF: FPGA: Recv ZDACR 28279
17-03-18 04:33:50.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:50.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.384 -07 000000606 INF: FPGA: Recv ZSGSRD 29443
17-03-18 04:33:50.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:50.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29439
17-03-18 04:33:50.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.404 -07 000000512 INF: FPGA: Recv ZSGSRD 29441
17-03-18 04:33:50.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.414 -07 000000467 INF: FPGA: Recv ZSGSRD 29440
17-03-18 04:33:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.424 -07 000000512 INF: FPGA: Recv ZSGSRD 29449
17-03-18 04:33:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 12 ms overall
17-03-18 04:33:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.434 -07 000000581 INF: FPGA: Recv ZSGSRD 29443
17-03-18 04:33:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:33:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.444 -07 000000512 INF: FPGA: Recv ZSGSRD 29434
17-03-18 04:33:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29442
17-03-18 04:33:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.464 -07 000000512 INF: FPGA: Recv ZSGSRD 29441
17-03-18 04:33:50.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:50.474 -07 000000581 INF: FPGA: Recv ZSGSRD 29442
17-03-18 04:33:50.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:50.484 -07 000000461 INF: FPGA: Recv ZPIEZORD 24840
17-03-18 04:33:50.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:50.494 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -10.1 V.
17-03-18 04:33:50.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29441 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29442 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29434 (-128.6 uncal um), Max = 29449 (-128.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:33:50.494 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29441, posNoise = 8, negNoise = 7
17-03-18 04:33:50.494 -07 000000610 INF: Z Motor: After move to -0.129453, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:50.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:33:50.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:50.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:50.494 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:50.494 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:50.494 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:50.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:50.494 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:50.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:50.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:50.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:33:50.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:50.494 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:50.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:50.504 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:50.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:33:50.504 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:50.514 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:33:50.514 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:50.514 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:33:50.514 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:33:50.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28456 150\n [Camera]
17-03-18 04:33:50.714 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:50.894 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.001704,
17-03-18 04:33:51.134 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:51.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:51.134 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:51.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:51.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:51.134 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:51.144 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:51.144 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:33:51.144 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:51.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:33:51.324 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 807
17-03-18 04:33:51.474 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:51.524 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:33:51.524 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:33:51.524 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:51.524 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:51.524 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:33:51.524 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:33:51.524 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:51.524 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:51.524 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:33:51.534 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:33:51.684 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:51.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:51.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:51.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:51.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:33:51.684 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:51.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:51.684 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:51.684 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:51.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:33:51.684 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:51.874 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:33:51.874 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:51.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28456 150' command took 2 ms to send, 1353 ms to get response, and 1359 ms overall
17-03-18 04:33:51.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:51.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129458581676719. ------
17-03-18 04:33:51.874 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:51.874 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13593 mm
17-03-18 04:33:51.874 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:52.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 04:33:52.094 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:33:52.094 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:52.094 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 04:33:52.094 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:33:52.094 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:52.094 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:52.094 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:33:52.094 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:33:52.104 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:33:52.114 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:33:52.114 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 04:33:52.114 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:52.234 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:52.234 -07 000000467 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:33:52.234 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 350 ms to get response, and 352 ms overall
17-03-18 04:33:52.234 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 119 ms overall
17-03-18 04:33:52.234 -07 000000461 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:52.234 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:52.234 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:33:52.234 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:52.234 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29694, sync = True, waitForSettling = False)
17-03-18 04:33:52.234 -07 000000467 INF: Z Motor: Moving to -0.135930 mm, started at -0.129459 mm, distance = -6.47 um
17-03-18 04:33:52.244 -07 000000467 INF: FPGA: Xmit ZDACW 29694\n [Z Motor]
17-03-18 04:33:52.254 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:52.824 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:33:52.824 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:52.824 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 04:33:52.824 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-18 04:33:52.824 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 560 ms to get response, and 588 ms overall
17-03-18 04:33:52.824 -07 000000467 INF: FPGA: 'ZDACW 29694' command took 0 ms to send, 570 ms to get response, and 587 ms overall
17-03-18 04:33:52.824 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:52.824 -07 000000581 INF: FPGA: Recv ZDACR 29694
17-03-18 04:33:52.834 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:52.834 -07 000000467 INF: Z Motor: MoveAbsStepped took 597 ms (did NOT wait for settling yet))
17-03-18 04:33:52.874 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:52.874 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:33:52.884 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:52.884 -07 000000461 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:52.884 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:33:52.884 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 589 ms, distance = 0.845 mm, average velocity = 1.435 mm/sec
17-03-18 04:33:53.834 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:53.834 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-18 04:33:53.844 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.844 -07 000000461 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:53.874 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:53.874 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:33:53.874 -07 000000461 INF: Y Motor: Moved to 69.8638 after 1760 ms (table move)
17-03-18 04:33:53.874 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135930 mm (DAC = 29694)
17-03-18 04:33:53.874 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.874 -07 000000461 INF: FPGA: Recv ZSGSRD 30448
17-03-18 04:33:53.884 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:33:53.884 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.884 -07 000000462 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:33:53.894 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.894 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.894 -07 000000467 INF: FPGA: Recv ZSGSRD 30449
17-03-18 04:33:53.904 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.904 -07 000000462 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:33:53.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.914 -07 000000462 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:33:53.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:53.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.924 -07 000000461 INF: FPGA: Recv ZSGSRD 30452
17-03-18 04:33:53.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.934 -07 000000462 INF: FPGA: Recv ZSGSRD 30451
17-03-18 04:33:53.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.944 -07 000000461 INF: FPGA: Recv ZSGSRD 30449
17-03-18 04:33:53.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.954 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.954 -07 000000461 INF: FPGA: Recv ZSGSRD 30450
17-03-18 04:33:53.964 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:53.964 -07 000000462 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:33:53.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.974 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:53.974 -07 000000462 INF: FPGA: Recv ZPIEZORD 26189
17-03-18 04:33:53.984 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:53.984 -07 000000487 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.4 V.
17-03-18 04:33:53.984 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30449 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30448 (-135.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30447 (-135.1 uncal um), Max = 30452 (-135.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:33:53.984 -07 000000487 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30449, posNoise = 3, negNoise = 2
17-03-18 04:33:53.984 -07 000000487 INF: Z Motor: After move to -0.135930, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:53.984 -07 000000487 INF: Z Motor: Settle wait time = 1641 ms, measure time = 106 ms (allowed 150 ms), total time = 1747 ms
17-03-18 04:33:53.984 -07 000000487 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:54.034 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2152 ms
17-03-18 04:33:54.034 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:54.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:54.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:54.034 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:54.034 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:54.034 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:54.034 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:54.034 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:54.044 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:54.044 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:54.044 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:54.054 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:33:54.054 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:33:54.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:54.104 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:33:54.404 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:33:54.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:33:54.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:54.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:54.434 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:54.434 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:54.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:33:54.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:33:54.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:54.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:54.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:33:54.534 -07 000000618 INF: Autofocus start
17-03-18 04:33:54.534 -07 000000618 INF: MeasureProfile start
17-03-18 04:33:54.534 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:54.534 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:54.544 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:54.544 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:54.554 -07 000000618 INF: MeasureProfile done
17-03-18 04:33:54.554 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:54.554 -07 000000618 INF: Autofocus finished
17-03-18 04:33:54.744 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:54.744 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:54.744 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.135934187515614. ----------
17-03-18 04:33:54.744 -07 000000610 INF: Cycle	126	Tile	13	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:54.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28201, sync = True, waitForSettling = True)
17-03-18 04:33:54.754 -07 000000610 INF: Z Motor: Moving to -0.129096 mm, started at -0.135934 mm, distance = 6.84 um
17-03-18 04:33:54.754 -07 000000610 INF: FPGA: Xmit ZDACW 28201\n [Z Motor]
17-03-18 04:33:54.754 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:33:54.764 -07 000000610 INF: FPGA: 'ZDACW 28201' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:33:54.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:54.764 -07 000000626 INF: FPGA: Recv ZDACR 28201
17-03-18 04:33:54.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:33:54.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29382
17-03-18 04:33:54.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:54.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.934 -07 000000467 INF: FPGA: Recv ZSGSRD 29390
17-03-18 04:33:54.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.944 -07 000000502 INF: FPGA: Recv ZSGSRD 29387
17-03-18 04:33:54.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29381
17-03-18 04:33:54.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.964 -07 000000618 INF: FPGA: Recv ZSGSRD 29384
17-03-18 04:33:54.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.974 -07 000000467 INF: FPGA: Recv ZSGSRD 29383
17-03-18 04:33:54.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.984 -07 000000502 INF: FPGA: Recv ZSGSRD 29392
17-03-18 04:33:54.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:54.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:54.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29387
17-03-18 04:33:55.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:55.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:55.004 -07 000000618 INF: FPGA: Recv ZSGSRD 29384
17-03-18 04:33:55.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:55.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:55.014 -07 000000012 INF: FPGA: Recv ZSGSRD 29388
17-03-18 04:33:55.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:55.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:55.024 -07 000000502 INF: FPGA: Recv ZPIEZORD 24794
17-03-18 04:33:55.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:55.034 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -10.1 V.
17-03-18 04:33:55.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29386 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29386 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29381 (-128.3 uncal um), Max = 29392 (-128.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:33:55.034 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29386, posNoise = 6, negNoise = 5
17-03-18 04:33:55.034 -07 000000610 INF: Z Motor: After move to -0.129096, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:55.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:33:55.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:55.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:55.034 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:55.034 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:55.034 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:33:55.034 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:55.034 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:33:55.034 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:33:55.034 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:33:55.034 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:33:55.034 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:33:55.034 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:33:55.044 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:33:55.044 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:33:55.044 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:33:55.044 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:33:55.054 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:33:55.054 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:33:55.054 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:33:55.054 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:33:55.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28378 150\n [Camera]
17-03-18 04:33:55.254 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:33:55.674 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:33:55.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:33:55.674 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:55.674 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:33:55.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:33:55.684 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:55.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:55.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:33:55.684 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:55.684 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:33:55.864 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28378 807
17-03-18 04:33:56.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:33:56.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:33:56.074 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:33:56.074 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:56.084 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:56.084 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:33:56.084 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:33:56.084 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:33:56.084 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:56.084 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:56.094 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:33:56.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:33:56.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:33:56.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:33:56.224 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:33:56.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:33:56.224 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:33:56.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:33:56.224 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:33:56.224 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:33:56.224 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:33:56.254 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.023489,
17-03-18 04:33:56.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:33:56.414 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:33:56.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28378 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-18 04:33:56.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:33:56.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129105250008922. ------
17-03-18 04:33:56.424 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13550 mm
17-03-18 04:33:56.424 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:33:56.424 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:56.534 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:56.534 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-18 04:33:56.534 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:33:56.534 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:33:56.534 -07 000000487 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-18 04:33:56.534 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29599, sync = True, waitForSettling = False)
17-03-18 04:33:56.534 -07 000000502 INF: Z Motor: Moving to -0.135496 mm, started at -0.129105 mm, distance = -6.39 um
17-03-18 04:33:56.544 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:56.554 -07 000000502 INF: FPGA: Xmit ZDACW 29599\n [Z Motor]
17-03-18 04:33:56.604 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:33:56.604 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:33:56.604 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:56.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:33:56.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:33:56.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:56.614 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:33:56.614 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:33:56.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:33:56.614 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:33:57.534 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-18 04:33:57.534 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:33:57.534 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:33:57.534 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:33:57.534 -07 000000502 INF: FPGA: 'ZDACW 29599' command took 0 ms to send, 971 ms to get response, and 995 ms overall
17-03-18 04:33:57.534 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 991 ms to get response, and 996 ms overall
17-03-18 04:33:57.534 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:57.534 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 981 ms to get response, and 996 ms overall
17-03-18 04:33:57.534 -07 000000487 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:57.534 -07 000000487 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:33:57.534 -07 000000487 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:33:57.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:33:57.534 -07 000000462 INF: FPGA: Recv ZDACR 29599
17-03-18 04:33:57.544 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:57.544 -07 000000502 INF: Z Motor: MoveAbsStepped took 1004 ms (did NOT wait for settling yet))
17-03-18 04:33:57.544 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:33:57.914 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:33:57.914 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:33:57.964 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:57.974 -07 000000480 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:33:57.974 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:33:57.974 -07 000000487 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:57.974 -07 000000487 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:33:57.974 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-18 04:33:58.924 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:33:58.924 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:33:58.934 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:33:58.934 -07 000000487 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:33:58.964 -07 000000487 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:33:58.964 -07 000000487 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:33:58.964 -07 000000487 INF: Y Motor: Moved to 70.6885 after 2426 ms (table move)
17-03-18 04:33:58.964 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135496 mm (DAC = 29599)
17-03-18 04:33:58.964 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:58.964 -07 000000590 INF: FPGA: Recv ZSGSRD 30388
17-03-18 04:33:58.974 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:33:58.974 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:58.974 -07 000000590 INF: FPGA: Recv ZSGSRD 30388
17-03-18 04:33:58.984 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:58.984 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:58.984 -07 000000590 INF: FPGA: Recv ZSGSRD 30382
17-03-18 04:33:58.994 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:58.994 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:58.994 -07 000000590 INF: FPGA: Recv ZSGSRD 30379
17-03-18 04:33:59.004 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.004 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:59.004 -07 000000590 INF: FPGA: Recv ZSGSRD 30380
17-03-18 04:33:59.014 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.014 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:59.014 -07 000000590 INF: FPGA: Recv ZSGSRD 30384
17-03-18 04:33:59.024 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.024 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:59.024 -07 000000590 INF: FPGA: Recv ZSGSRD 30378
17-03-18 04:33:59.034 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.034 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:59.034 -07 000000590 INF: FPGA: Recv ZSGSRD 30379
17-03-18 04:33:59.044 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.044 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:59.044 -07 000000590 INF: FPGA: Recv ZSGSRD 30381
17-03-18 04:33:59.054 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.054 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:33:59.054 -07 000000590 INF: FPGA: Recv ZSGSRD 30388
17-03-18 04:33:59.064 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.064 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:33:59.064 -07 000000590 INF: FPGA: Recv ZPIEZORD 26112
17-03-18 04:33:59.074 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.074 -07 000000447 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.4 V.
17-03-18 04:33:59.074 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30383 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30382 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30378 (-134.7 uncal um), Max = 30388 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:33:59.074 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30383, posNoise = 5, negNoise = 5
17-03-18 04:33:59.074 -07 000000447 INF: Z Motor: After move to -0.135496, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:33:59.074 -07 000000447 INF: Z Motor: Settle wait time = 2431 ms, measure time = 104 ms (allowed 150 ms), total time = 2535 ms
17-03-18 04:33:59.074 -07 000000447 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:33:59.124 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2699 ms
17-03-18 04:33:59.124 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:33:59.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:33:59.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:33:59.124 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:33:59.124 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:33:59.124 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:33:59.124 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:33:59.124 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:33:59.124 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:33:59.134 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:33:59.134 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:33:59.134 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:33:59.134 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:33:59.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:33:59.184 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:33:59.484 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:33:59.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:33:59.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:33:59.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:33:59.524 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:33:59.524 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 04:33:59.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:33:59.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:33:59.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:33:59.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:33:59.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:33:59.724 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:33:59.724 -07 000000447 INF: Autofocus start
17-03-18 04:33:59.724 -07 000000447 INF: MeasureProfile start
17-03-18 04:33:59.724 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:33:59.734 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:33:59.734 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:33:59.734 -07 000000447 INF: MeasureProfile done
17-03-18 04:33:59.734 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:33:59.734 -07 000000447 INF: Autofocus finished
17-03-18 04:33:59.934 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:33:59.934 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:33:59.934 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135510189514258. ----------
17-03-18 04:33:59.934 -07 000000610 INF: Cycle	126	Tile	14	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:33:59.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28106, sync = True, waitForSettling = True)
17-03-18 04:33:59.944 -07 000000610 INF: Z Motor: Moving to -0.128661 mm, started at -0.135510 mm, distance = 6.85 um
17-03-18 04:33:59.944 -07 000000610 INF: FPGA: Xmit ZDACW 28106\n [Z Motor]
17-03-18 04:33:59.944 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:33:59.954 -07 000000610 INF: FPGA: 'ZDACW 28106' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:33:59.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:33:59.954 -07 000000382 INF: FPGA: Recv ZDACR 28106
17-03-18 04:33:59.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:33:59.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:34:00.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.114 -07 000000467 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:34:00.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:00.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.124 -07 000000382 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:34:00.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.134 -07 000000569 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:34:00.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.144 -07 000000382 INF: FPGA: Recv ZSGSRD 29312
17-03-18 04:34:00.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.164 -07 000000382 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:34:00.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:34:00.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.174 -07 000000455 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:34:00.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:34:00.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.194 -07 000000382 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:34:00.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.204 -07 000000467 INF: FPGA: Recv ZSGSRD 29316
17-03-18 04:34:00.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:00.214 -07 000000447 INF: FPGA: Recv ZSGSRD 29313
17-03-18 04:34:00.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:00.224 -07 000000382 INF: FPGA: Recv ZPIEZORD 24669
17-03-18 04:34:00.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:00.234 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -10.2 V.
17-03-18 04:34:00.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29312 (-127.9 uncal um), Max = 29324 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:34:00.234 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 6, negNoise = 6
17-03-18 04:34:00.234 -07 000000610 INF: Z Motor: After move to -0.128661, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:00.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:34:00.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:00.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:00.234 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:00.234 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:00.234 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:34:00.234 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:00.234 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:34:00.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:34:00.234 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:34:00.234 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:34:00.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:34:00.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:34:00.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:34:00.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:34:00.244 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:34:00.244 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:34:00.254 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:34:00.254 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:34:00.254 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:34:00.254 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:34:00.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28283 150\n [Camera]
17-03-18 04:34:00.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:34:00.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:34:00.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:34:00.884 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:34:00.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:34:00.884 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:00.884 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:00.884 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:00.884 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:34:00.884 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:00.894 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:34:01.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28283 807
17-03-18 04:34:01.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:34:01.284 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:34:01.284 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:34:01.284 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:01.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:34:01.284 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:34:01.284 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:01.294 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:34:01.294 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:34:01.294 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:34:01.304 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:34:01.424 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:34:01.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:34:01.424 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:01.424 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:01.424 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:34:01.424 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:34:01.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:34:01.434 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:01.434 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:01.434 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:34:01.614 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.05619,
17-03-18 04:34:01.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:34:01.614 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:34:01.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28283 150' command took 2 ms to send, 1347 ms to get response, and 1360 ms overall
17-03-18 04:34:01.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:34:01.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128668403583283. ------
17-03-18 04:34:01.624 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13538 mm
17-03-18 04:34:01.624 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:34:01.624 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29573, sync = True, waitForSettling = False)
17-03-18 04:34:01.634 -07 000000487 INF: Z Motor: Moving to -0.135377 mm, started at -0.128668 mm, distance = -6.71 um
17-03-18 04:34:01.634 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:01.634 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:34:01.634 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 04:34:01.634 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:01.644 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:34:01.644 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:01.644 -07 000000606 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:34:01.654 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:34:01.654 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:01.654 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:34:01.654 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:34:01.664 -07 000000487 INF: FPGA: Xmit ZDACW 29573\n [Z Motor]
17-03-18 04:34:01.664 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:34:01.674 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:34:01.674 -07 000000487 INF: FPGA: 'ZDACW 29573' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:34:01.684 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:34:01.684 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:34:01.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:34:01.704 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:01.704 -07 000000569 INF: FPGA: Recv ZDACR 29573
17-03-18 04:34:01.714 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:34:01.714 -07 000000487 INF: Z Motor: MoveAbsStepped took 80 ms (did NOT wait for settling yet))
17-03-18 04:34:01.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:34:01.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:34:01.824 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:01.824 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:34:01.824 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:34:01.824 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:01.824 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:01.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:34:01.834 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:34:01.834 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:34:01.874 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:34:01.874 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:34:02.054 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:34:02.054 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 04:34:02.104 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:02.114 -07 000000590 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:34:02.114 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:34:02.114 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:02.114 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:34:02.114 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.844 mm, average velocity = 2.069 mm/sec
17-03-18 04:34:03.064 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:03.064 -07 000000606 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:34:03.074 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:03.074 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:03.104 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:34:03.104 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:34:03.104 -07 000000502 INF: Y Motor: Moved to 71.5190 after 1470 ms (table move)
17-03-18 04:34:03.104 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135377 mm (DAC = 29573)
17-03-18 04:34:03.104 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.104 -07 000000012 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:34:03.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:34:03.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.114 -07 000000487 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:34:03.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.124 -07 000000502 INF: FPGA: Recv ZSGSRD 30361
17-03-18 04:34:03.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.134 -07 000000606 INF: FPGA: Recv ZSGSRD 30369
17-03-18 04:34:03.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.144 -07 000000502 INF: FPGA: Recv ZSGSRD 30371
17-03-18 04:34:03.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.154 -07 000000606 INF: FPGA: Recv ZSGSRD 30371
17-03-18 04:34:03.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.164 -07 000000487 INF: FPGA: Recv ZSGSRD 30359
17-03-18 04:34:03.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.174 -07 000000502 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:34:03.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.184 -07 000000480 INF: FPGA: Recv ZSGSRD 30361
17-03-18 04:34:03.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:03.194 -07 000000606 INF: FPGA: Recv ZSGSRD 30364
17-03-18 04:34:03.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.204 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:03.204 -07 000000487 INF: FPGA: Recv ZPIEZORD 26110
17-03-18 04:34:03.214 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:03.214 -07 000000462 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.3 V.
17-03-18 04:34:03.214 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30364 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30361 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30359 (-134.6 uncal um), Max = 30371 (-134.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:34:03.214 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30364, posNoise = 7, negNoise = 5
17-03-18 04:34:03.214 -07 000000462 INF: Z Motor: After move to -0.135377, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:03.214 -07 000000462 INF: Z Motor: Settle wait time = 1475 ms, measure time = 105 ms (allowed 150 ms), total time = 1580 ms
17-03-18 04:34:03.214 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:34:03.264 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 04:34:03.264 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:34:03.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:03.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:03.264 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:03.264 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:03.274 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:34:03.274 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:03.274 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:34:03.274 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:34:03.274 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:34:03.274 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:34:03.284 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:34:03.284 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:34:03.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:34:03.334 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:34:03.634 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:34:03.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:34:03.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:34:03.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 04:34:03.674 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:34:03.674 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:34:03.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:34:03.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:34:03.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:03.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:34:03.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:34:03.774 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:03.774 -07 000000424 INF: Autofocus start
17-03-18 04:34:03.774 -07 000000424 INF: MeasureProfile start
17-03-18 04:34:03.774 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:03.784 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:03.784 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:34:03.784 -07 000000424 INF: MeasureProfile done
17-03-18 04:34:03.784 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:34:03.784 -07 000000424 INF: Autofocus finished
17-03-18 04:34:03.984 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:34:03.984 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:34:03.984 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135388129483565. ----------
17-03-18 04:34:03.984 -07 000000610 INF: Cycle	126	Tile	15	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:34:03.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28081, sync = True, waitForSettling = True)
17-03-18 04:34:03.994 -07 000000610 INF: Z Motor: Moving to -0.128547 mm, started at -0.135388 mm, distance = 6.84 um
17-03-18 04:34:03.994 -07 000000610 INF: FPGA: Xmit ZDACW 28081\n [Z Motor]
17-03-18 04:34:03.994 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:34:04.004 -07 000000610 INF: FPGA: 'ZDACW 28081' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:04.004 -07 000000590 INF: FPGA: Recv ZDACR 28081
17-03-18 04:34:04.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:34:04.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.164 -07 000000487 INF: FPGA: Recv ZSGSRD 29297
17-03-18 04:34:04.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:04.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.174 -07 000000606 INF: FPGA: Recv ZSGSRD 29306
17-03-18 04:34:04.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.184 -07 000000424 INF: FPGA: Recv ZSGSRD 29303
17-03-18 04:34:04.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.194 -07 000000455 INF: FPGA: Recv ZSGSRD 29303
17-03-18 04:34:04.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.204 -07 000000424 INF: FPGA: Recv ZSGSRD 29299
17-03-18 04:34:04.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.214 -07 000000447 INF: FPGA: Recv ZSGSRD 29297
17-03-18 04:34:04.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.224 -07 000000569 INF: FPGA: Recv ZSGSRD 29299
17-03-18 04:34:04.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.234 -07 000000462 INF: FPGA: Recv ZSGSRD 29300
17-03-18 04:34:04.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.244 -07 000000012 INF: FPGA: Recv ZSGSRD 29301
17-03-18 04:34:04.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:04.254 -07 000000462 INF: FPGA: Recv ZSGSRD 29299
17-03-18 04:34:04.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:04.264 -07 000000590 INF: FPGA: Recv ZPIEZORD 24694
17-03-18 04:34:04.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:04.274 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -10.1 V.
17-03-18 04:34:04.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29297 (-127.8 uncal um), Max = 29306 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:34:04.274 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 6, negNoise = 3
17-03-18 04:34:04.274 -07 000000610 INF: Z Motor: After move to -0.128547, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:04.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:34:04.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:04.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:04.274 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:04.274 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:34:04.274 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:04.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:34:04.274 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:34:04.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:04.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:34:04.274 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:34:04.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:34:04.274 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:34:04.274 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:34:04.274 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:34:04.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:34:04.284 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:34:04.294 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:34:04.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:34:04.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:34:04.294 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:34:04.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28257 150\n [Camera]
17-03-18 04:34:04.504 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:34:04.924 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:34:04.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:34:04.924 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:04.924 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:04.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:34:04.924 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:34:04.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:34:04.924 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:04.924 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:04.924 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:34:05.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28257 807
17-03-18 04:34:05.264 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:34:05.314 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:34:05.314 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:34:05.314 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:05.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:34:05.324 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:34:05.324 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:05.324 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:34:05.324 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:34:05.324 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:34:05.334 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:34:05.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:34:05.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:34:05.464 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:05.464 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:05.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:34:05.474 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:34:05.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:34:05.474 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:05.474 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:05.474 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:34:05.654 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:34:05.664 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:34:05.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28257 150' command took 2 ms to send, 1352 ms to get response, and 1362 ms overall
17-03-18 04:34:05.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:34:05.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128552767764731. ------
17-03-18 04:34:05.664 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:05.664 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13494 mm
17-03-18 04:34:05.664 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:34:05.674 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:34:05.674 -07 000000487 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 04:34:05.674 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:05.674 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29478, sync = True, waitForSettling = False)
17-03-18 04:34:05.674 -07 000000382 INF: Z Motor: Moving to -0.134942 mm, started at -0.128553 mm, distance = -6.39 um
17-03-18 04:34:05.674 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:05.674 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:34:05.674 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:34:05.684 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:34:05.684 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:05.684 -07 000000487 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:05.684 -07 000000487 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:34:05.684 -07 000000487 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:34:05.694 -07 000000382 INF: FPGA: Xmit ZDACW 29478\n [Z Motor]
17-03-18 04:34:05.694 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:34:05.704 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:34:05.704 -07 000000382 INF: FPGA: 'ZDACW 29478' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:05.714 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:05.714 -07 000000424 INF: FPGA: Recv ZDACR 29478
17-03-18 04:34:05.724 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:34:05.724 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:34:05.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:34:05.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:34:05.874 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:05.874 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:34:05.874 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:34:05.874 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:05.874 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:05.884 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:34:05.884 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:34:05.884 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:34:05.884 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 04:34:05.884 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:34:06.074 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:34:06.074 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:34:06.124 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:06.134 -07 000000382 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:34:06.134 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:34:06.134 -07 000000487 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:06.134 -07 000000487 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 04:34:06.134 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 04:34:06.684 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:34:06.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:34:07.024 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.005817,
17-03-18 04:34:07.084 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:07.084 -07 000000382 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:34:07.094 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:07.094 -07 000000487 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:07.124 -07 000000487 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:34:07.124 -07 000000487 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:34:07.124 -07 000000487 INF: Y Motor: Moved to 72.3496 after 1450 ms (table move)
17-03-18 04:34:07.124 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134942 mm (DAC = 29478)
17-03-18 04:34:07.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.124 -07 000000487 INF: FPGA: Recv ZSGSRD 30297
17-03-18 04:34:07.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:34:07.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.134 -07 000000487 INF: FPGA: Recv ZSGSRD 30297
17-03-18 04:34:07.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.144 -07 000000480 INF: FPGA: Recv ZSGSRD 30299
17-03-18 04:34:07.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.154 -07 000000480 INF: FPGA: Recv ZSGSRD 30296
17-03-18 04:34:07.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.164 -07 000000467 INF: FPGA: Recv ZSGSRD 30293
17-03-18 04:34:07.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.174 -07 000000467 INF: FPGA: Recv ZSGSRD 30292
17-03-18 04:34:07.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.184 -07 000000606 INF: FPGA: Recv ZSGSRD 30296
17-03-18 04:34:07.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30298
17-03-18 04:34:07.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.204 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.204 -07 000000606 INF: FPGA: Recv ZSGSRD 30289
17-03-18 04:34:07.214 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.214 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:07.214 -07 000000487 INF: FPGA: Recv ZSGSRD 30297
17-03-18 04:34:07.224 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.224 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:07.224 -07 000000487 INF: FPGA: Recv ZPIEZORD 26021
17-03-18 04:34:07.234 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:07.234 -07 000000462 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.498 V. Piezo Error = -9.4 V.
17-03-18 04:34:07.234 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30295 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30296 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30289 (-134.1 uncal um), Max = 30299 (-134.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:34:07.234 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30295, posNoise = 4, negNoise = 6
17-03-18 04:34:07.234 -07 000000462 INF: Z Motor: After move to -0.134942, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:07.234 -07 000000462 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:34:07.234 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:34:07.284 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:34:07.284 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:34:07.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:07.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:07.284 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:07.284 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:07.284 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:34:07.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:07.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:34:07.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:34:07.294 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:34:07.294 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:34:07.304 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:34:07.304 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:34:07.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:34:07.354 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:34:07.654 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:34:07.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:34:07.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:34:07.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) start.
17-03-18 04:34:07.684 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:34:07.694 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:34:07.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:34:07.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:34:07.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:07.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:34:07.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:34:07.794 -07 000000480 INF: Autofocus start
17-03-18 04:34:07.794 -07 000000480 INF: MeasureProfile start
17-03-18 04:34:07.794 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:07.794 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:07.804 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:07.804 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:34:07.804 -07 000000480 INF: MeasureProfile done
17-03-18 04:34:07.804 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:34:07.804 -07 000000480 INF: Autofocus finished
17-03-18 04:34:08.004 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:34:08.004 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:34:08.004 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134944858845783. ----------
17-03-18 04:34:08.014 -07 000000610 INF: Cycle	126	Tile	16	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:34:08.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28002, sync = True, waitForSettling = True)
17-03-18 04:34:08.014 -07 000000610 INF: Z Motor: Moving to -0.128185 mm, started at -0.134945 mm, distance = 6.76 um
17-03-18 04:34:08.014 -07 000000610 INF: FPGA: Xmit ZDACW 28002\n [Z Motor]
17-03-18 04:34:08.014 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:34:08.024 -07 000000610 INF: FPGA: 'ZDACW 28002' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:34:08.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:08.024 -07 000000512 INF: FPGA: Recv ZDACR 28002
17-03-18 04:34:08.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:34:08.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29243
17-03-18 04:34:08.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:08.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.194 -07 000000626 INF: FPGA: Recv ZSGSRD 29252
17-03-18 04:34:08.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29240
17-03-18 04:34:08.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.214 -07 000000480 INF: FPGA: Recv ZSGSRD 29242
17-03-18 04:34:08.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.224 -07 000000618 INF: FPGA: Recv ZSGSRD 29251
17-03-18 04:34:08.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.234 -07 000000606 INF: FPGA: Recv ZSGSRD 29240
17-03-18 04:34:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.244 -07 000000467 INF: FPGA: Recv ZSGSRD 29241
17-03-18 04:34:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.254 -07 000000424 INF: FPGA: Recv ZSGSRD 29242
17-03-18 04:34:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.264 -07 000000012 INF: FPGA: Recv ZSGSRD 29244
17-03-18 04:34:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:08.274 -07 000000447 INF: FPGA: Recv ZSGSRD 29246
17-03-18 04:34:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:08.284 -07 000000569 INF: FPGA: Recv ZPIEZORD 24671
17-03-18 04:34:08.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:08.294 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -10.0 V.
17-03-18 04:34:08.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29244 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29242 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29240 (-127.4 uncal um), Max = 29252 (-127.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:34:08.294 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29244, posNoise = 8, negNoise = 4
17-03-18 04:34:08.294 -07 000000610 INF: Z Motor: After move to -0.128185, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:08.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:34:08.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:08.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:08.294 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:08.294 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:08.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:34:08.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:34:08.294 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:34:08.294 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:08.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:34:08.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:34:08.294 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:34:08.294 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:34:08.304 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:34:08.304 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:34:08.304 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:34:08.304 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:34:08.314 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:34:08.314 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:34:08.314 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:34:08.314 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:34:08.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28179 150\n [Camera]
17-03-18 04:34:08.514 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:34:08.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:34:08.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:34:08.934 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:08.934 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:08.934 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 04:34:08.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:34:08.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:34:08.934 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:08.934 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:08.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 04:34:09.124 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28179 807
17-03-18 04:34:09.274 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:34:09.314 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:34:09.314 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:34:09.314 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:09.314 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:34:09.314 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:34:09.314 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:09.314 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:09.314 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:34:09.324 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:09.324 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:34:09.484 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:34:09.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:34:09.484 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:09.484 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:09.484 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:34:09.484 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:34:09.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:34:09.484 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:09.484 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:09.484 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:34:09.674 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:34:09.674 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:34:09.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28179 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:34:09.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:34:09.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128193011884792. ------
17-03-18 04:34:09.674 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:09.674 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13469 mm
17-03-18 04:34:09.674 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:34:09.684 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:34:09.684 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 04:34:09.684 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:09.684 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:34:09.684 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:09.684 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29422, sync = True, waitForSettling = False)
17-03-18 04:34:09.684 -07 000000606 INF: Z Motor: Moving to -0.134685 mm, started at -0.128193 mm, distance = -6.49 um
17-03-18 04:34:09.684 -07 000000487 INF: FPGA: Recv YRDPOS 148173
17-03-18 04:34:09.694 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:34:09.694 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:09.694 -07 000000606 INF: FPGA: Xmit ZDACW 29422\n [Z Motor]
17-03-18 04:34:09.694 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 04:34:09.694 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:34:09.694 -07 000000626 INF: Y Motor: Moving 1348 steps-27
17-03-18 04:34:09.704 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:34:09.704 -07 000000606 INF: FPGA: 'ZDACW 29422' command took 2 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:34:09.714 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:34:09.724 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:09.724 -07 000000487 INF: FPGA: Recv ZDACR 29422
17-03-18 04:34:09.734 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:09.734 -07 000000606 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:34:09.884 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:34:09.884 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:34:09.884 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:09.884 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:34:09.884 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:34:09.884 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:09.894 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:09.894 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:34:09.894 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:34:09.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:34:09.904 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:34:09.904 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 222 ms overall
17-03-18 04:34:10.084 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:34:10.084 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 04:34:10.134 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:10.134 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:34:10.144 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:34:10.144 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:10.144 -07 000000626 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:34:10.144 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-18 04:34:11.094 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:11.094 -07 000000581 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:34:11.104 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:11.104 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:11.134 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:34:11.134 -07 000000626 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:34:11.134 -07 000000626 INF: Y Motor: Moved to 73.1763 after 1449 ms (table move)
17-03-18 04:34:11.134 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134685 mm (DAC = 29422)
17-03-18 04:34:11.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.134 -07 000000480 INF: FPGA: Recv ZSGSRD 30253
17-03-18 04:34:11.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:34:11.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.144 -07 000000447 INF: FPGA: Recv ZSGSRD 30251
17-03-18 04:34:11.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:11.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.154 -07 000000606 INF: FPGA: Recv ZSGSRD 30247
17-03-18 04:34:11.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:11.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.164 -07 000000467 INF: FPGA: Recv ZSGSRD 30259
17-03-18 04:34:11.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:11.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.174 -07 000000480 INF: FPGA: Recv ZSGSRD 30264
17-03-18 04:34:11.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:11.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.194 -07 000000447 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:34:11.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:34:11.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.204 -07 000000382 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:34:11.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:11.234 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.234 -07 000000480 INF: FPGA: Recv ZSGSRD 30256
17-03-18 04:34:11.244 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:11.264 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.264 -07 000000480 INF: FPGA: Recv ZSGSRD 30250
17-03-18 04:34:11.274 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:11.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:11.274 -07 000000581 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:34:11.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:11.284 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:11.284 -07 000000462 INF: FPGA: Recv ZPIEZORD 26028
17-03-18 04:34:11.294 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:11.294 -07 000000618 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.3 V.
17-03-18 04:34:11.294 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30254 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30255 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30247 (-133.8 uncal um), Max = 30264 (-134.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:34:11.294 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30254, posNoise = 10, negNoise = 7
17-03-18 04:34:11.294 -07 000000618 INF: Z Motor: After move to -0.134685, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:11.294 -07 000000618 INF: Z Motor: Settle wait time = 1453 ms, measure time = 155 ms (allowed 150 ms), total time = 1608 ms
17-03-18 04:34:11.294 -07 000000618 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 04:34:11.294 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:34:11.294 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:34:11.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:11.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:11.294 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:11.294 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:11.294 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:34:11.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:11.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:34:11.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:34:11.304 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:34:11.304 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:34:11.314 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:34:11.314 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:34:11.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:34:11.364 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:34:11.664 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:34:11.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:34:11.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:34:11.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 04:34:11.684 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:34:11.704 -07 000000606 INF: FPGA: Recv @CAMSNAP 382
17-03-18 04:34:11.704 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:34:11.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 387 ms overall
17-03-18 04:34:11.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:34:11.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:11.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:11.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 04:34:11.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:34:11.904 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:11.904 -07 000000462 INF: Autofocus start
17-03-18 04:34:11.904 -07 000000462 INF: MeasureProfile start
17-03-18 04:34:11.904 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:11.914 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:11.914 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:34:11.914 -07 000000462 INF: MeasureProfile done
17-03-18 04:34:11.914 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:34:11.914 -07 000000462 INF: Autofocus finished
17-03-18 04:34:12.114 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:34:12.114 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:34:12.114 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134681466147971. ----------
17-03-18 04:34:12.114 -07 000000610 INF: Cycle	126	Tile	17	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:34:12.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27930, sync = True, waitForSettling = True)
17-03-18 04:34:12.124 -07 000000610 INF: Z Motor: Moving to -0.127855 mm, started at -0.134681 mm, distance = 6.83 um
17-03-18 04:34:12.124 -07 000000610 INF: FPGA: Xmit ZDACW 27930\n [Z Motor]
17-03-18 04:34:12.124 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:34:12.134 -07 000000610 INF: FPGA: 'ZDACW 27930' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:12.134 -07 000000512 INF: FPGA: Recv ZDACR 27930
17-03-18 04:34:12.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:34:12.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29195
17-03-18 04:34:12.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:12.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.304 -07 000000626 INF: FPGA: Recv ZSGSRD 29192
17-03-18 04:34:12.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.314 -07 000000569 INF: FPGA: Recv ZSGSRD 29194
17-03-18 04:34:12.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29193
17-03-18 04:34:12.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.334 -07 000000569 INF: FPGA: Recv ZSGSRD 29187
17-03-18 04:34:12.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.344 -07 000000512 INF: FPGA: Recv ZSGSRD 29197
17-03-18 04:34:12.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:12.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.354 -07 000000512 INF: FPGA: Recv ZSGSRD 29196
17-03-18 04:34:12.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.364 -07 000000618 INF: FPGA: Recv ZSGSRD 29190
17-03-18 04:34:12.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:12.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.384 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 4.009895,
17-03-18 04:34:12.384 -07 000000569 INF: FPGA: Recv ZSGSRD 29194
17-03-18 04:34:12.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:34:12.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:12.404 -07 000000590 INF: FPGA: Recv ZSGSRD 29192
17-03-18 04:34:12.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:34:12.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:12.434 -07 000000012 INF: FPGA: Recv ZPIEZORD 24667
17-03-18 04:34:12.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:12.444 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.9 V.
17-03-18 04:34:12.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29193 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29194 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29187 (-127.1 uncal um), Max = 29197 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:34:12.444 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29193, posNoise = 4, negNoise = 6
17-03-18 04:34:12.444 -07 000000610 INF: Z Motor: After move to -0.127855, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:12.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 04:34:12.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:12.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:12.444 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:12.444 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:12.444 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:34:12.444 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:34:12.444 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:34:12.444 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:12.444 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:34:12.444 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:34:12.444 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:34:12.444 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:34:12.454 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:34:12.454 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:34:12.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:34:12.454 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:34:12.454 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:34:12.454 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:34:12.454 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:34:12.454 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:34:12.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28106 150\n [Camera]
17-03-18 04:34:12.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:34:13.084 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:34:13.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:34:13.084 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:13.084 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:13.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:34:13.084 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:34:13.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:34:13.084 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:13.084 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:13.084 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:34:13.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28106 807
17-03-18 04:34:13.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:34:13.464 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:34:13.464 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:34:13.464 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:13.464 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:13.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:34:13.464 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:34:13.464 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:13.464 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:34:13.474 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:34:13.474 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:34:13.634 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:34:13.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:34:13.634 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:13.634 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:13.634 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:34:13.634 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:34:13.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:34:13.634 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:13.634 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:13.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:34:13.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:34:13.824 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:34:13.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28106 150' command took 2 ms to send, 1353 ms to get response, and 1359 ms overall
17-03-18 04:34:13.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:34:13.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127865377065563. ------
17-03-18 04:34:13.834 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:13.834 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13371 mm
17-03-18 04:34:13.834 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:34:13.834 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:13.834 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:34:13.834 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 04:34:13.834 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29208, sync = True, waitForSettling = False)
17-03-18 04:34:13.834 -07 000000590 INF: Z Motor: Moving to -0.133706 mm, started at -0.127865 mm, distance = -5.84 um
17-03-18 04:34:13.844 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:13.844 -07 000000590 INF: FPGA: Xmit ZDACW 29208\n [Z Motor]
17-03-18 04:34:13.844 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:34:13.854 -07 000000590 INF: FPGA: 'ZDACW 29208' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:34:13.854 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:13.854 -07 000000581 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:34:13.864 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:34:13.864 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:34:13.864 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:13.864 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:34:13.864 -07 000000424 INF: Y Motor: Moving 1354 steps-33
17-03-18 04:34:13.874 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:13.874 -07 000000581 INF: FPGA: Recv ZDACR 29208
17-03-18 04:34:13.884 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:34:13.884 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:13.884 -07 000000590 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:34:14.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:34:14.024 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:34:14.024 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:14.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:34:14.024 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:34:14.024 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:14.024 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:14.034 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:34:14.034 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:34:14.034 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:34:14.064 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:34:14.064 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:34:14.254 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:34:14.254 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:34:14.294 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:14.304 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:34:14.304 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:34:14.304 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:14.304 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:34:14.304 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 04:34:15.254 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:15.254 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:34:15.264 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:15.264 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:15.284 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:34:15.284 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:34:15.284 -07 000000424 INF: Y Motor: Moved to 74.0083 after 1450 ms (table move)
17-03-18 04:34:15.284 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133706 mm (DAC = 29208)
17-03-18 04:34:15.284 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.294 -07 000000424 INF: FPGA: Recv ZSGSRD 30112
17-03-18 04:34:15.294 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:34:15.294 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.294 -07 000000447 INF: FPGA: Recv ZSGSRD 30100
17-03-18 04:34:15.304 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.304 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.304 -07 000000424 INF: FPGA: Recv ZSGSRD 30104
17-03-18 04:34:15.314 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.314 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.314 -07 000000424 INF: FPGA: Recv ZSGSRD 30099
17-03-18 04:34:15.324 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.324 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.324 -07 000000424 INF: FPGA: Recv ZSGSRD 30100
17-03-18 04:34:15.334 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.334 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.334 -07 000000424 INF: FPGA: Recv ZSGSRD 30110
17-03-18 04:34:15.344 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.344 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.344 -07 000000424 INF: FPGA: Recv ZSGSRD 30106
17-03-18 04:34:15.354 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.354 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.354 -07 000000424 INF: FPGA: Recv ZSGSRD 30102
17-03-18 04:34:15.364 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.364 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.364 -07 000000424 INF: FPGA: Recv ZSGSRD 30098
17-03-18 04:34:15.374 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.374 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:15.374 -07 000000424 INF: FPGA: Recv ZSGSRD 30102
17-03-18 04:34:15.384 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.384 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:15.384 -07 000000424 INF: FPGA: Recv ZPIEZORD 25846
17-03-18 04:34:15.394 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:15.394 -07 000000502 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.4 V.
17-03-18 04:34:15.394 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30103 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30102 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30098 (-132.9 uncal um), Max = 30112 (-133.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:34:15.394 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30103, posNoise = 9, negNoise = 5
17-03-18 04:34:15.394 -07 000000502 INF: Z Motor: After move to -0.133706, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:15.394 -07 000000502 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms
17-03-18 04:34:15.394 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:34:15.444 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 04:34:15.444 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:34:15.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:15.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:15.444 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:15.444 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:15.444 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:34:15.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:15.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:34:15.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:34:15.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:34:15.454 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:34:15.464 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:34:15.464 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:34:15.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:34:15.514 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:34:15.814 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:34:15.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:34:15.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:34:15.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-18 04:34:15.844 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:34:15.854 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:34:15.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:34:15.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:34:15.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:15.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:34:15.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:34:15.954 -07 000000569 INF: Autofocus start
17-03-18 04:34:15.954 -07 000000569 INF: MeasureProfile start
17-03-18 04:34:15.954 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:15.954 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:15.964 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:15.964 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:34:15.964 -07 000000569 INF: MeasureProfile done
17-03-18 04:34:15.964 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:34:15.964 -07 000000569 INF: Autofocus finished
17-03-18 04:34:16.164 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:34:16.164 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:34:16.174 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133711410114565. ----------
17-03-18 04:34:16.174 -07 000000610 INF: Cycle	126	Tile	18	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:34:16.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27703, sync = True, waitForSettling = True)
17-03-18 04:34:16.174 -07 000000610 INF: Z Motor: Moving to -0.126816 mm, started at -0.133711 mm, distance = 6.90 um
17-03-18 04:34:16.174 -07 000000610 INF: FPGA: Xmit ZDACW 27703\n [Z Motor]
17-03-18 04:34:16.174 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:34:16.184 -07 000000610 INF: FPGA: 'ZDACW 27703' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:16.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:16.184 -07 000000012 INF: FPGA: Recv ZDACR 27703
17-03-18 04:34:16.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:34:16.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.344 -07 000000581 INF: FPGA: Recv ZSGSRD 29028
17-03-18 04:34:16.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:16.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.354 -07 000000569 INF: FPGA: Recv ZSGSRD 29026
17-03-18 04:34:16.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.364 -07 000000581 INF: FPGA: Recv ZSGSRD 29030
17-03-18 04:34:16.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.374 -07 000000569 INF: FPGA: Recv ZSGSRD 29027
17-03-18 04:34:16.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.384 -07 000000382 INF: FPGA: Recv ZSGSRD 29033
17-03-18 04:34:16.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.394 -07 000000581 INF: FPGA: Recv ZSGSRD 29029
17-03-18 04:34:16.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.404 -07 000000424 INF: FPGA: Recv ZSGSRD 29023
17-03-18 04:34:16.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.414 -07 000000382 INF: FPGA: Recv ZSGSRD 29026
17-03-18 04:34:16.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.424 -07 000000569 INF: FPGA: Recv ZSGSRD 29023
17-03-18 04:34:16.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:16.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29030
17-03-18 04:34:16.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:16.444 -07 000000012 INF: FPGA: Recv ZPIEZORD 24467
17-03-18 04:34:16.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:16.454 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.227 V. Piezo Error = -10.0 V.
17-03-18 04:34:16.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29028 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29028 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29023 (-126.0 uncal um), Max = 29033 (-126.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:34:16.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29028, posNoise = 5, negNoise = 5
17-03-18 04:34:16.454 -07 000000610 INF: Z Motor: After move to -0.126816, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:16.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:34:16.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:16.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:16.454 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:16.454 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:34:16.454 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:16.454 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:34:16.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:34:16.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:16.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:34:16.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:34:16.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:34:16.454 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:34:16.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:34:16.454 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:34:16.454 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:34:16.454 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:34:16.464 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:34:16.464 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:34:16.464 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:34:16.464 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:34:16.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 27880 150\n [Camera]
17-03-18 04:34:16.674 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:34:16.684 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:34:16.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:34:17.094 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:34:17.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:34:17.094 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:17.094 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:17.094 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:34:17.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:34:17.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:34:17.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:17.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:17.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:34:17.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27880 807
17-03-18 04:34:17.434 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:34:17.474 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:34:17.474 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:34:17.474 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:17.474 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:17.474 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:34:17.474 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:34:17.474 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:17.474 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:17.474 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:34:17.484 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:34:17.644 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:34:17.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:34:17.644 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:17.644 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:17.644 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:34:17.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:34:17.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:34:17.644 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:17.644 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:17.644 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 04:34:17.774 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.954032,
17-03-18 04:34:17.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:34:17.964 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:34:17.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 27880 150' command took 2 ms to send, 1484 ms to get response, and 1490 ms overall
17-03-18 04:34:17.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:34:17.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126805382062172. ------
17-03-18 04:34:17.974 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:17.974 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13319 mm
17-03-18 04:34:17.974 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:34:17.974 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:17.974 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29095, sync = True, waitForSettling = False)
17-03-18 04:34:17.974 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:34:17.974 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 04:34:17.974 -07 000000590 INF: Z Motor: Moving to -0.133188 mm, started at -0.126805 mm, distance = -6.38 um
17-03-18 04:34:17.984 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:34:17.984 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:17.984 -07 000000512 INF: FPGA: Recv YRDPOS 151570
17-03-18 04:34:17.994 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:34:17.994 -07 000000424 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:17.994 -07 000000590 INF: FPGA: Xmit ZDACW 29095\n [Z Motor]
17-03-18 04:34:17.994 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:34:17.994 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:34:17.994 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:34:18.004 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:34:18.004 -07 000000590 INF: FPGA: 'ZDACW 29095' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:34:18.014 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:34:18.024 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:18.024 -07 000000382 INF: FPGA: Recv ZDACR 29095
17-03-18 04:34:18.034 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:34:18.034 -07 000000590 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:34:18.054 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 410 ms.
17-03-18 04:34:18.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 408 ms.
17-03-18 04:34:18.054 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:34:18.054 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:18.054 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:34:18.054 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:18.054 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:18.064 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:34:18.064 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 04:34:18.064 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 04:34:18.204 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:34:18.204 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 04:34:18.384 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:34:18.384 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 390 ms overall
17-03-18 04:34:18.414 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:18.424 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:34:18.424 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:34:18.424 -07 000000424 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:18.424 -07 000000424 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 04:34:18.424 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.154 mm/sec
17-03-18 04:34:19.374 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:19.374 -07 000000590 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:34:19.384 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:19.384 -07 000000424 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:19.404 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:34:19.404 -07 000000424 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:34:19.404 -07 000000424 INF: Y Motor: Moved to 74.8320 after 1425 ms (table move)
17-03-18 04:34:19.404 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133188 mm (DAC = 29095)
17-03-18 04:34:19.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.404 -07 000000581 INF: FPGA: Recv ZSGSRD 30024
17-03-18 04:34:19.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:19.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.414 -07 000000581 INF: FPGA: Recv ZSGSRD 30022
17-03-18 04:34:19.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.424 -07 000000447 INF: FPGA: Recv ZSGSRD 30018
17-03-18 04:34:19.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.434 -07 000000447 INF: FPGA: Recv ZSGSRD 30010
17-03-18 04:34:19.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.444 -07 000000447 INF: FPGA: Recv ZSGSRD 30024
17-03-18 04:34:19.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.454 -07 000000382 INF: FPGA: Recv ZSGSRD 30025
17-03-18 04:34:19.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.464 -07 000000382 INF: FPGA: Recv ZSGSRD 30025
17-03-18 04:34:19.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.474 -07 000000382 INF: FPGA: Recv ZSGSRD 30027
17-03-18 04:34:19.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.484 -07 000000480 INF: FPGA: Recv ZSGSRD 30018
17-03-18 04:34:19.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:19.494 -07 000000447 INF: FPGA: Recv ZSGSRD 30027
17-03-18 04:34:19.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.504 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:19.504 -07 000000480 INF: FPGA: Recv ZPIEZORD 25787
17-03-18 04:34:19.514 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:19.514 -07 000000626 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.3 V.
17-03-18 04:34:19.514 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30022 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30024 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30010 (-132.3 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 04:34:19.514 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30022, posNoise = 5, negNoise = 12
17-03-18 04:34:19.514 -07 000000626 INF: Z Motor: After move to -0.133188, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:19.514 -07 000000626 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-18 04:34:19.514 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:34:19.564 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-18 04:34:19.564 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:34:19.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:19.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:19.564 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:19.564 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:19.564 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:34:19.564 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:19.564 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:34:19.564 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:34:19.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:34:19.574 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:34:19.584 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:34:19.584 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:34:19.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:34:19.634 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:34:19.934 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:34:19.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:34:19.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:34:19.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) start.
17-03-18 04:34:19.974 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:34:19.974 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:34:19.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:34:20.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575345344, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:34:20.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:20.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:34:20.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:34:20.074 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:34:20.074 -07 000000480 INF: Autofocus start
17-03-18 04:34:20.074 -07 000000480 INF: MeasureProfile start
17-03-18 04:34:20.074 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:34:20.084 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:34:20.084 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:34:20.084 -07 000000480 INF: MeasureProfile done
17-03-18 04:34:20.084 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:34:20.084 -07 000000480 INF: Autofocus finished
17-03-18 04:34:20.284 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:34:20.284 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:34:20.284 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133191048931082. ----------
17-03-18 04:34:20.284 -07 000000610 INF: Cycle	126	Tile	19	Exposure Settings		A	422	G	203	T	203	C	422
17-03-18 04:34:20.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27619, sync = True, waitForSettling = True)
17-03-18 04:34:20.294 -07 000000610 INF: Z Motor: Moving to -0.126432 mm, started at -0.133191 mm, distance = 6.76 um
17-03-18 04:34:20.294 -07 000000610 INF: FPGA: Xmit ZDACW 27619\n [Z Motor]
17-03-18 04:34:20.294 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:34:20.304 -07 000000610 INF: FPGA: 'ZDACW 27619' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:34:20.304 -07 000000502 INF: FPGA: Recv ZDACR 27619
17-03-18 04:34:20.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:34:20.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.464 -07 000000502 INF: FPGA: Recv ZSGSRD 28968
17-03-18 04:34:20.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:20.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.474 -07 000000590 INF: FPGA: Recv ZSGSRD 28975
17-03-18 04:34:20.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.484 -07 000000590 INF: FPGA: Recv ZSGSRD 28971
17-03-18 04:34:20.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.494 -07 000000590 INF: FPGA: Recv ZSGSRD 28967
17-03-18 04:34:20.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.504 -07 000000590 INF: FPGA: Recv ZSGSRD 28972
17-03-18 04:34:20.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.514 -07 000000590 INF: FPGA: Recv ZSGSRD 28971
17-03-18 04:34:20.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.524 -07 000000590 INF: FPGA: Recv ZSGSRD 28971
17-03-18 04:34:20.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.534 -07 000000590 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:34:20.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.544 -07 000000590 INF: FPGA: Recv ZSGSRD 28968
17-03-18 04:34:20.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:34:20.554 -07 000000502 INF: FPGA: Recv ZSGSRD 28973
17-03-18 04:34:20.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:34:20.564 -07 000000502 INF: FPGA: Recv ZPIEZORD 24404
17-03-18 04:34:20.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:20.574 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.214 V. Piezo Error = -10.0 V.
17-03-18 04:34:20.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28970 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28971 (-125.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 28967 (-125.6 uncal um), Max = 28975 (-125.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:34:20.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28970, posNoise = 5, negNoise = 3
17-03-18 04:34:20.574 -07 000000610 INF: Z Motor: After move to -0.126432, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:34:20.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:34:20.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:34:20.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:34:20.574 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:34:20.574 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:34:20.574 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:34:20.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:34:20.574 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:34:20.574 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:34:20.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:34:20.574 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:34:20.574 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:34:20.574 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:34:20.584 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:34:20.584 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:34:20.584 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:34:20.584 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:34:20.584 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:34:20.584 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:34:20.594 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:34:20.594 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:34:20.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 27796 150\n [Camera]
17-03-18 04:34:20.794 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:34:21.214 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-18 04:34:21.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-18 04:34:21.214 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:21.214 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-18 04:34:21.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-18 04:34:21.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:21.224 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:21.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:34:21.224 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:21.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:34:21.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27796 807
17-03-18 04:34:21.554 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-18 04:34:21.594 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:34:21.594 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:34:21.594 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:21.604 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:34:21.604 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:34:21.604 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:21.604 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:21.604 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:34:21.604 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:21.614 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:34:21.684 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:34:21.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 125. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:34:21.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-18 04:34:21.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-18 04:34:21.764 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:34:21.764 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-18 04:34:21.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-18 04:34:21.764 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:34:21.894 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:34:21.894 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:34:21.894 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:34:21.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:34:21.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-18 04:34:21.954 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:34:21.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 27796 150' command took 2 ms to send, 1356 ms to get response, and 1362 ms overall
17-03-18 04:34:22.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:34:22.294 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:34:22.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:22.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:34:22.294 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:34:22.294 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:34:22.294 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:22.304 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:34:22.304 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-18 04:34:22.304 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:34:22.304 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 04:34:22.344 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:34:22.344 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:34:22.384 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 04:34:22.404 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 04:34:22.404 -07 000000610 INF: Imaging Cycle 126: ScanTilesCommand Cycle 126 time end. Duration was 171287 ms.
17-03-18 04:34:22.404 -07 000000610 INF: =================== Cycle #126 ===================
17-03-18 04:34:22.404 -07 000000610 INF: ===================  ===================
17-03-18 04:34:22.404 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:34:22.414 -07 000000590 INF: FPGA: Recv EXLED1ADCR 30
17-03-18 04:34:22.414 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:34:22.414 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 30 --> 0.0 mW (old method), or 2.3 mW (new method). Difference = 2.3 mW
17-03-18 04:34:22.414 -07 000000382 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 126, FrontChillerTemperature: 3.954032, FrontChillerHeatSinkTemperature: 0.31015, AmbientTemperature: 18.62148, FlowCellCompartmentTemperature: 21.98239, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.36689, GreenLEDSensorTemperature: 27.03058, PhotodiodePowerAdcGreen: 30, PhotodiodePowerMwGreen: 2.291791
17-03-18 04:34:22.504 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.