17-03-18 04:34:22.564 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:34:22.564 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:34:22.564 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 04:34:22.564 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:22.564 -07 000000502 INF: FPGA: Recv YRDPOS 153257
17-03-18 04:34:22.574 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:34:22.574 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:22.574 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:34:22.574 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:34:22.574 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:34:22.694 -07 000000012 INF: FPGA: Recv YMVTO 154377 871
17-03-18 04:34:22.694 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 115 ms overall
17-03-18 04:34:22.694 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 04:34:22.694 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 04:34:22.694 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 04:34:23.134 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.983999,
17-03-18 04:34:25.694 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:34:25.694 -07 000000569 INF: FPGA: Recv YRDPOS 154380
17-03-18 04:34:25.704 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:25.704 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:34:25.734 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:34:25.734 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 04:34:25.734 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3169 ms
17-03-18 04:34:25.734 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 60° ===================
17-03-18 04:34:25.734 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:34:25.734 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:34:25.744 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:34:25.754 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:34:25.754 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:34:25.754 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 04:34:25.764 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:34:25.764 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 60° ===================
17-03-18 04:34:25.764 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:34:25.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:34:25.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:34:25.794 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:34:25.794 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:34:25.794 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:34:26.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:34:26.114 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:34:26.114 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:34:26.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:34:26.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:34:26.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:34:26.284 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:34:26.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:34:26.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:26.314 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:34:26.314 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:34:26.314 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:34:26.444 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:34:26.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:26.684 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:34:26.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1769, R2=1838, Total=3607. Warn if over 250 bubbles per interval.
17-03-18 04:34:28.494 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.974486,
17-03-18 04:34:29.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:29.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:30.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:30.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:30.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:30.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:30.544 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:34:30.544 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:34:30.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:30.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:34:30.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:34:30.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:30.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:34:30.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:34:30.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:34:30.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:34:31.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:31.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:31.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:31.484 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:34:31.484 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:34:31.684 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 7
17-03-18 04:34:31.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=7, R2=6, Total=13. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1776, R2=1844, Total=3620. Warn if over 250 bubbles per interval.
17-03-18 04:34:32.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:34:32.704 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:34:32.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:34:32.724 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:34:32.724 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:34:32.724 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:34:32.864 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:34:32.884 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:34:32.884 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:34:32.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:34:32.954 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:34:32.954 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:34:33.054 -07 000000610 INF: =================== Cycle #127, Pumping Reagent CMS (4) ===================
17-03-18 04:34:33.054 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:34:33.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:33.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:34:33.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:34:33.084 -07 000000610 INF: =================== Cycle #127, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:34:33.214 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:34:33.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:33.854 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.990831,
17-03-18 04:34:34.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:34.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:35.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:35.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:35.174 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:34:35.174 -07 000000610 INF: =================== Cycle #127, Pumping Reagent CMS (4) ===================
17-03-18 04:34:35.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:35.334 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:34:35.334 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:34:35.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:35.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:34:35.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:34:35.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:34:35.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:34:35.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:36.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:36.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:36.114 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:34:36.114 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:34:36.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 4
17-03-18 04:34:36.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=4, R2=2, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1780, R2=1846, Total=3626. Warn if over 250 bubbles per interval.
17-03-18 04:34:37.334 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:34:37.334 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:34:37.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:34:37.354 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:34:37.354 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:34:37.354 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:34:37.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:34:37.524 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:34:37.524 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:34:37.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:34:37.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:34:37.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:34:37.694 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:34:37.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:34:37.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:37.724 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:34:37.724 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:34:37.724 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:34:37.854 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:34:37.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:38.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:38.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:38.794 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:34:38.794 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:34:38.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:38.954 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:34:38.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:34:39.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:39.114 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:34:39.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:34:39.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:34:39.214 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.999021,
17-03-18 04:34:39.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:34:39.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:39.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:39.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:39.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:34:39.734 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:34:39.734 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:34:39.734 -07 000000480 INF: WaitCommand(10000) start
17-03-18 04:34:39.734 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:34:40.954 -07 000000447 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:34:40.954 -07 000000447 INF: LanePump: Xmit /1?\r
17-03-18 04:34:40.984 -07 000000447 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:34:40.984 -07 000000447 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:34:41.114 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:34:41.154 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:41.684 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 04:34:41.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1780, R2=1848, Total=3628. Warn if over 250 bubbles per interval.
17-03-18 04:34:42.684 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:42.714 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:43.134 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:43.164 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:43.164 -07 000000447 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:34:43.164 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:34:43.164 -07 000000447 INF: ===================  ===================
17-03-18 04:34:44.574 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.009895,
17-03-18 04:34:46.684 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:34:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1781, R2=1848, Total=3629. Warn if over 250 bubbles per interval.
17-03-18 04:34:49.744 -07 000000480 INF: WaitCommand(10000) end
17-03-18 04:34:49.744 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:34:49.744 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:34:49.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:49.774 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:34:49.774 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:34:49.774 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:34:49.904 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:34:49.934 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.986717,
17-03-18 04:34:49.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:51.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:34:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1849, Total=3631. Warn if over 250 bubbles per interval.
17-03-18 04:34:55.294 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.990831,
17-03-18 04:34:56.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:56.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:56.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:56.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:56.684 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:34:56.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:34:56.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:57.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:57.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:57.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:34:57.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:57.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:57.904 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:34:57.904 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:34:58.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:58.064 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:34:58.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:34:58.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:34:58.224 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:34:58.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:34:58.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:34:58.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:34:58.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:58.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:34:58.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:34:58.844 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:34:58.844 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:35:00.064 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:35:00.064 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:35:00.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:35:00.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:35:00.084 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:35:00.084 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:35:00.294 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:35:00.314 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:35:00.314 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:35:00.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:35:00.384 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:35:00.384 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:35:00.484 -07 000000610 INF: =================== Cycle #127, Pumping Reagent IMT (1) ===================
17-03-18 04:35:00.484 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:35:00.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:00.514 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:35:00.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:35:00.514 -07 000000610 INF: =================== Cycle #127, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:35:00.644 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:35:00.654 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.994908,
17-03-18 04:35:00.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:35:01.684 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:01.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:02.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:02.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:35:02.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:02.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:02.604 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:35:02.604 -07 000000610 INF: =================== Cycle #127, Pumping Reagent IMT (1) ===================
17-03-18 04:35:02.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:02.764 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:35:02.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:35:02.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:02.924 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:35:02.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:35:02.924 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:35:03.054 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:35:03.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:03.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:03.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:03.544 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:35:03.544 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:35:04.764 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:35:04.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:35:04.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:35:04.784 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:35:04.784 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:35:04.784 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:35:05.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:35:05.034 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:35:05.034 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:35:05.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:35:05.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:35:05.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:35:05.204 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:35:05.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:35:05.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:05.234 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:35:05.234 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:35:05.234 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:35:05.364 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:35:05.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:35:06.014 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.990831,
17-03-18 04:35:06.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:06.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:06.304 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:35:06.304 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:35:06.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:06.464 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:35:06.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:35:06.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:06.624 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:35:06.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:35:06.624 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:35:06.684 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:06.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:06.754 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:35:06.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:07.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:07.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:07.244 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:35:07.244 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:35:07.244 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 65° ===================
17-03-18 04:35:07.244 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:35:07.244 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:35:07.244 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:35:07.254 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:35:07.254 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:35:07.254 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 04:35:07.264 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:35:07.264 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 65° ===================
17-03-18 04:35:07.264 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:35:07.264 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:35:11.374 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.989471,
17-03-18 04:35:11.684 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:11.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:16.684 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:16.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:16.734 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.000345,
17-03-18 04:35:21.684 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:21.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:22.094 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.005817,
17-03-18 04:35:26.684 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:26.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:27.454 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.02213,
17-03-18 04:35:31.684 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:31.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:32.814 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.997626,
17-03-18 04:35:36.684 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:36.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:37.274 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:35:37.274 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:35:37.274 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:35:37.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:37.404 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:35:37.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:35:37.404 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:35:37.534 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:35:37.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:35:38.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:38.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:38.144 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 04:35:38.144 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:35:38.174 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.981281,
17-03-18 04:35:38.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:38.304 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:35:38.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:35:38.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:35:38.464 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:35:38.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:35:38.464 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:35:38.594 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:35:38.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:39.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:39.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:39.084 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:35:39.084 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:35:39.084 -07 000000382 INF: WaitCommand(30000) start
17-03-18 04:35:39.084 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:35:39.084 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:35:40.304 -07 000000569 INF: AsyncDelayTimer waited 1214ms
17-03-18 04:35:40.304 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-18 04:35:40.334 -07 000000569 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:35:40.334 -07 000000569 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:35:40.464 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:35:40.504 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:35:41.684 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:41.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:42.844 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:42.874 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:35:43.294 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 04:35:43.324 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:35:43.324 -07 000000569 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:35:43.324 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:35:43.324 -07 000000569 INF: ===================  ===================
17-03-18 04:35:43.534 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.96762,
17-03-18 04:35:46.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:48.894 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.012614,
17-03-18 04:35:51.684 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:54.254 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.003063,
17-03-18 04:35:56.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:35:56.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:35:59.614 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.000345,
17-03-18 04:36:01.684 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:01.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:04.974 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.016692,
17-03-18 04:36:06.684 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:06.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:09.094 -07 000000382 INF: WaitCommand(30000) end
17-03-18 04:36:09.094 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 22° ===================
17-03-18 04:36:09.094 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:36:09.184 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:36:09.184 -07 000000581 INF: FPGA: Recv TEC2EN 
17-03-18 04:36:09.194 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:09.194 -07 000000610 INF: =================== Cycle #127, Flow Cell Temp 22° ===================
17-03-18 04:36:09.194 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:36:09.194 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:36:09.194 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:36:09.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:09.234 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:36:09.234 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:36:09.234 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:36:09.364 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:36:09.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:10.334 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.030322,
17-03-18 04:36:11.684 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:11.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:12.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:12.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:12.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:13.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:13.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:13.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:13.464 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:36:13.464 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:36:13.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:13.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:36:13.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:36:13.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:13.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:36:13.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:36:13.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:36:13.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:36:13.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:14.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:14.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:14.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:36:14.404 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:36:15.624 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:36:15.624 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:36:15.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:36:15.644 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:36:15.644 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:36:15.644 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:36:15.694 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.989471,
17-03-18 04:36:15.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:36:15.814 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:36:15.814 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:36:15.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:36:15.884 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:36:15.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:36:15.984 -07 000000610 INF: =================== Cycle #127, Pumping Reagent USM (2) ===================
17-03-18 04:36:15.984 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:36:15.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:16.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:36:16.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:36:16.014 -07 000000610 INF: =================== Cycle #127, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:36:16.144 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:36:16.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:16.684 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:16.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:17.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:17.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:18.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:18.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:18.104 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:36:18.104 -07 000000610 INF: =================== Cycle #127, Pumping Reagent USM (2) ===================
17-03-18 04:36:18.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:18.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:36:18.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:36:18.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:18.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:36:18.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:36:18.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:36:18.554 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:36:18.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:19.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:19.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:19.044 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:36:19.044 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:36:20.264 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:36:20.264 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:36:20.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:36:20.284 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:36:20.284 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:36:20.284 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:36:20.434 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:36:20.454 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:36:20.454 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:36:20.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:36:20.524 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:36:20.524 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:36:20.624 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:36:20.624 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:36:20.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:20.654 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:36:20.654 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:36:20.654 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:36:20.784 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:36:20.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:21.054 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.99219,
17-03-18 04:36:21.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:21.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:21.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:21.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:21.724 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:36:21.724 -07 000000610 INF: =================== Cycle #127, Pumping Reagent PR2 (3) ===================
17-03-18 04:36:21.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:21.884 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:36:21.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:36:22.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:36:22.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:36:22.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:36:22.044 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:36:22.174 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:36:22.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:22.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:22.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:22.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:36:22.664 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:36:22.664 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:36:22.664 -07 000000591 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:36:22.664 -07 000000447 INF: WaitCommand(10000) start
17-03-18 04:36:23.884 -07 000000591 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:36:23.884 -07 000000591 INF: LanePump: Xmit /1?\r
17-03-18 04:36:23.914 -07 000000591 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:36:23.914 -07 000000591 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:36:24.044 -07 000000591 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:36:24.084 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:25.614 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:25.644 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:36:26.064 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 04:36:26.094 -07 000000591 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:36:26.094 -07 000000591 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:36:26.094 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:36:26.094 -07 000000591 INF: ===================  ===================
17-03-18 04:36:26.414 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.983999,
17-03-18 04:36:26.684 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:26.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:31.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:31.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:31.774 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.970374,
17-03-18 04:36:32.674 -07 000000447 INF: WaitCommand(10000) end
17-03-18 04:36:32.674 -07 000000610 INF: =================== Cycle #127, Imaging ===================
17-03-18 04:36:32.674 -07 000000610 INF: Imaging Cycle 127: ScanTilesCommand Cycle 127 time start.
17-03-18 04:36:32.674 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:36:32.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:36:32.704 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:36:32.704 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:36:32.704 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:36:33.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:36:33.024 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:36:33.024 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:36:33.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:36:33.094 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:36:33.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:33.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:33.094 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:36:33.094 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:33.094 -07 000000382 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:36:33.094 -07 000000480 INF: FPGA: Recv EXLED1ON 
17-03-18 04:36:33.104 -07 000000382 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:36:33.104 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:36:33.104 -07 000000502 INF: FPGA: Recv EXLED1ADCR 23158
17-03-18 04:36:33.114 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:33.114 -07 000000382 INF: RedLED: Using Red data: Photodiode ADC 23158 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-18 04:36:33.114 -07 000000382 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:36:33.114 -07 000000447 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:36:33.124 -07 000000382 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:33.124 -07 000000382 INF: RedLED: LED was on for 19 ms
17-03-18 04:36:33.124 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 04:36:33.124 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:36:33.124 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:33.124 -07 000000382 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:36:33.124 -07 000000591 INF: FPGA: Recv EXLED2ON 
17-03-18 04:36:33.134 -07 000000382 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:36:33.134 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:36:33.134 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 04:36:33.144 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:33.144 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 04:36:33.144 -07 000000382 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:36:33.144 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:36:33.154 -07 000000382 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:36:33.154 -07 000000382 INF: GreenLED: LED was on for 20 ms
17-03-18 04:36:33.154 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:36:33.154 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:36:33.154 -07 000000581 INF: FPGA: Recv EMCUR 
17-03-18 04:36:33.164 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:33.164 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:36:33.664 -07 000000581 INF: FPGA: Recv EMOUT
17-03-18 04:36:33.664 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:36:33.664 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:36:33.664 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 04:36:33.674 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:33.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:36:33.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.12643277775795. ------
17-03-18 04:36:33.674 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:33.674 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17844 mm
17-03-18 04:36:33.674 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:36:33.674 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:33.684 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:36:33.684 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:36:33.684 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:36:33.684 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 04:36:33.684 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38980, sync = True, waitForSettling = False)
17-03-18 04:36:33.684 -07 000000591 INF: Z Motor: Moving to -0.178439 mm, started at -0.126433 mm, distance = -52.01 um
17-03-18 04:36:33.694 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:33.694 -07 000000581 INF: FPGA: Recv YRDPOS 154380
17-03-18 04:36:33.704 -07 000000591 INF: FPGA: Xmit ZDACW 38980\n [Z Motor]
17-03-18 04:36:33.704 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:36:33.704 -07 000000382 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:33.704 -07 000000382 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:36:33.704 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:36:33.704 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:36:33.714 -07 000000591 INF: FPGA: 'ZDACW 38980' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:36:33.714 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:33.714 -07 000000581 INF: FPGA: Recv ZDACR 38980
17-03-18 04:36:33.724 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:36:33.724 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:33.724 -07 000000591 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:36:33.884 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:36:33.884 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:36:35.404 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-18 04:36:35.404 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 04:36:35.404 -07 000000382 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:36:35.404 -07 000000382 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-18 04:36:35.404 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-18 04:36:36.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:36.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:37.134 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.020806,
17-03-18 04:36:38.254 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:38.254 -07 000000590 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:36:38.264 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.264 -07 000000382 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:38.294 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:36:38.294 -07 000000382 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:36:38.294 -07 000000382 INF: Y Motor: Moved to 59.9102 after 4610 ms
17-03-18 04:36:38.294 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178439 mm (DAC = 38980)
17-03-18 04:36:38.294 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.294 -07 000000626 INF: FPGA: Recv ZSGSRD 37068
17-03-18 04:36:38.304 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:36:38.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.304 -07 000000382 INF: FPGA: Recv ZSGSRD 37058
17-03-18 04:36:38.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.314 -07 000000590 INF: FPGA: Recv ZSGSRD 37067
17-03-18 04:36:38.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.324 -07 000000502 INF: FPGA: Recv ZSGSRD 37064
17-03-18 04:36:38.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.334 -07 000000382 INF: FPGA: Recv ZSGSRD 37071
17-03-18 04:36:38.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.344 -07 000000502 INF: FPGA: Recv ZSGSRD 37068
17-03-18 04:36:38.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.354 -07 000000591 INF: FPGA: Recv ZSGSRD 37067
17-03-18 04:36:38.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.364 -07 000000382 INF: FPGA: Recv ZSGSRD 37072
17-03-18 04:36:38.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.374 -07 000000590 INF: FPGA: Recv ZSGSRD 37063
17-03-18 04:36:38.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.384 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:38.384 -07 000000569 INF: FPGA: Recv ZSGSRD 37064
17-03-18 04:36:38.394 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.394 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:38.394 -07 000000591 INF: FPGA: Recv ZPIEZORD 33251
17-03-18 04:36:38.404 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:38.404 -07 000000447 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.4 V.
17-03-18 04:36:38.404 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37066 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37067 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37058 (-177.5 uncal um), Max = 37072 (-177.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:36:38.404 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37066, posNoise = 6, negNoise = 8
17-03-18 04:36:38.404 -07 000000447 INF: Z Motor: After move to -0.178439, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:38.404 -07 000000447 INF: Z Motor: Settle wait time = 4613 ms, measure time = 108 ms (allowed 150 ms), total time = 4721 ms
17-03-18 04:36:38.404 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:36:38.454 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 04:36:38.454 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:36:38.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:38.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:38.454 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:38.454 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:38.454 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:36:38.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:38.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:38.454 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:36:38.474 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 04:36:38.474 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:36:38.484 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:36:38.484 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:36:38.484 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:36:38.484 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 04:36:38.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:36:38.534 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:36:38.834 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:36:38.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:36:38.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:36:38.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-18 04:36:38.874 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:36:38.874 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:36:38.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:36:38.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:36:38.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:38.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:36:38.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:36:39.074 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:39.074 -07 000000502 INF: Image SNR check: start
17-03-18 04:36:39.074 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:39.084 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:39.084 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:36:39.084 -07 000000502 INF: Image SNR check: pass  [peak (Max-Min)=139.89]
17-03-18 04:36:39.084 -07 000000502 INF: Autofocus start
17-03-18 04:36:39.084 -07 000000502 INF: MeasureProfile start
17-03-18 04:36:39.104 -07 000000502 INF: MeasureProfile done
17-03-18 04:36:39.104 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:36:39.104 -07 000000502 INF: Autofocus finished
17-03-18 04:36:39.284 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:36:39.284 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:36:39.284 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178443199257647. ----------
17-03-18 04:36:39.284 -07 000000610 INF: Cycle	127	Tile	1	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:36:39.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37477, sync = True, waitForSettling = True)
17-03-18 04:36:39.294 -07 000000610 INF: Z Motor: Moving to -0.171559 mm, started at -0.178443 mm, distance = 6.88 um
17-03-18 04:36:39.294 -07 000000610 INF: FPGA: Xmit ZDACW 37477\n [Z Motor]
17-03-18 04:36:39.294 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:36:39.304 -07 000000610 INF: FPGA: 'ZDACW 37477' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:39.304 -07 000000591 INF: FPGA: Recv ZDACR 37477
17-03-18 04:36:39.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:36:39.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.464 -07 000000447 INF: FPGA: Recv ZSGSRD 35998
17-03-18 04:36:39.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:39.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.474 -07 000000590 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:36:39.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.484 -07 000000569 INF: FPGA: Recv ZSGSRD 35998
17-03-18 04:36:39.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.494 -07 000000581 INF: FPGA: Recv ZSGSRD 35998
17-03-18 04:36:39.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.504 -07 000000382 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:36:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.514 -07 000000590 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:36:39.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.524 -07 000000502 INF: FPGA: Recv ZSGSRD 35991
17-03-18 04:36:39.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.534 -07 000000581 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:36:39.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.544 -07 000000590 INF: FPGA: Recv ZSGSRD 35999
17-03-18 04:36:39.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:39.554 -07 000000382 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:36:39.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:39.564 -07 000000581 INF: FPGA: Recv ZPIEZORD 31810
17-03-18 04:36:39.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:39.574 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -9.2 V.
17-03-18 04:36:39.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35996 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35997 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35991 (-170.7 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:36:39.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35996, posNoise = 3, negNoise = 5
17-03-18 04:36:39.574 -07 000000610 INF: Z Motor: After move to -0.171559, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:39.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:36:39.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:39.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:39.574 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:39.574 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:36:39.574 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:39.574 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:39.574 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:39.574 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:36:39.574 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:36:39.574 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:36:39.574 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:36:39.574 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:36:39.584 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:36:39.584 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:36:39.594 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:36:39.594 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:36:39.604 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:36:39.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:36:39.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:36:39.604 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:36:39.614 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:36:39.614 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 04:36:39.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37654 150\n [Camera]
17-03-18 04:36:39.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:36:40.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:36:40.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:36:40.244 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:40.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:36:40.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:36:40.244 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:40.244 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:40.244 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:36:40.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:40.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:36:40.434 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37654 808
17-03-18 04:36:40.584 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:36:40.644 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:36:40.644 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:36:40.644 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:40.644 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:36:40.644 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:36:40.644 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:40.654 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:36:40.654 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:36:40.654 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:36:40.664 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 04:36:40.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:36:40.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:36:40.784 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:40.784 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:40.784 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:36:40.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:36:40.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:36:40.794 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:40.794 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:40.794 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:36:40.974 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:36:40.974 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:36:40.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37654 150' command took 2 ms to send, 1349 ms to get response, and 1361 ms overall
17-03-18 04:36:40.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:36:40.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171569292265962. ------
17-03-18 04:36:40.994 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:41.184 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:36:41.184 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:36:41.184 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:41.184 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:36:41.184 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:36:41.184 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:41.194 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:36:41.194 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:36:41.194 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:36:41.204 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:36:41.204 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17783 mm
17-03-18 04:36:41.204 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:36:41.214 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:41.214 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 230 ms overall
17-03-18 04:36:41.214 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:36:41.214 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:36:41.214 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:36:41.224 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:41.824 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38846, sync = True, waitForSettling = False)
17-03-18 04:36:41.824 -07 000000480 INF: Z Motor: Moving to -0.177826 mm, started at -0.171569 mm, distance = -6.26 um
17-03-18 04:36:41.824 -07 000000480 INF: FPGA: Xmit ZDACW 38846\n [Z Motor]
17-03-18 04:36:42.824 -07 000000591 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:36:42.824 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:36:42.824 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:42.824 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1600 ms to get response, and 1606 ms overall
17-03-18 04:36:42.824 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:36:42.824 -07 000000480 INF: FPGA: 'ZDACW 38846' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 04:36:42.824 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:42.824 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1590 ms to get response, and 1602 ms overall
17-03-18 04:36:42.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:42.824 -07 000000382 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:42.824 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:36:42.824 -07 000000382 INF: Y Motor: Moving 1332 steps2
17-03-18 04:36:42.824 -07 000000581 INF: FPGA: Recv ZDACR 38846
17-03-18 04:36:42.834 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:36:42.834 -07 000000480 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 04:36:42.844 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:36:43.134 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.0344,
17-03-18 04:36:43.214 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:36:43.214 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:36:43.254 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:43.264 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:36:43.264 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 04:36:43.264 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:43.264 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:36:43.264 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.832 mm, average velocity = 2.102 mm/sec
17-03-18 04:36:44.214 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:44.214 -07 000000569 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:36:44.224 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.224 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:44.254 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:36:44.254 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:36:44.254 -07 000000382 INF: Y Motor: Moved to 60.7324 after 3034 ms (table move)
17-03-18 04:36:44.254 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177826 mm (DAC = 38846)
17-03-18 04:36:44.254 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.254 -07 000000382 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:36:44.264 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:36:44.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.264 -07 000000480 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:36:44.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.274 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36970
17-03-18 04:36:44.284 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.284 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.284 -07 000000579 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:36:44.294 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.294 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.294 -07 000000579 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:36:44.304 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.304 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.304 -07 000000625 INF: FPGA: Recv ZSGSRD 36975
17-03-18 04:36:44.314 -07 000000590 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.314 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.314 -07 000000625 INF: FPGA: Recv ZSGSRD 36968
17-03-18 04:36:44.324 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.324 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.324 -07 000000625 INF: FPGA: Recv ZSGSRD 36968
17-03-18 04:36:44.334 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.334 -07 000000480 INF: FPGA: Recv ZSGSRD 36970
17-03-18 04:36:44.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:44.344 -07 000000480 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:36:44.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.354 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:44.354 -07 000000480 INF: FPGA: Recv ZPIEZORD 33114
17-03-18 04:36:44.364 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:44.364 -07 000000590 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.5 V.
17-03-18 04:36:44.364 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36972 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36972 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36968 (-176.9 uncal um), Max = 36975 (-177.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:36:44.364 -07 000000590 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36972, posNoise = 3, negNoise = 4
17-03-18 04:36:44.364 -07 000000590 INF: Z Motor: After move to -0.177826, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:44.364 -07 000000590 INF: Z Motor: Settle wait time = 2434 ms, measure time = 105 ms (allowed 150 ms), total time = 2539 ms
17-03-18 04:36:44.364 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:36:44.414 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3200 ms
17-03-18 04:36:44.414 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:36:44.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:44.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:44.414 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:44.414 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:44.414 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:36:44.414 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:44.414 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:44.414 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:36:44.424 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:36:44.424 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:36:44.434 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:36:44.434 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:36:44.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:36:44.484 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:36:44.784 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:36:44.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:36:44.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:36:44.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 04:36:44.824 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:36:44.824 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:36:44.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:36:44.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 04:36:44.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:44.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:36:44.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:36:44.924 -07 000000447 INF: Autofocus start
17-03-18 04:36:44.924 -07 000000447 INF: MeasureProfile start
17-03-18 04:36:44.924 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:44.924 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:44.934 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:44.934 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:36:44.934 -07 000000447 INF: MeasureProfile done
17-03-18 04:36:44.934 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:36:44.934 -07 000000447 INF: Autofocus finished
17-03-18 04:36:45.134 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:36:45.134 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:36:45.134 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177839323316321. ----------
17-03-18 04:36:45.134 -07 000000610 INF: Cycle	127	Tile	2	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:36:45.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37343, sync = True, waitForSettling = True)
17-03-18 04:36:45.144 -07 000000610 INF: Z Motor: Moving to -0.170945 mm, started at -0.177839 mm, distance = 6.89 um
17-03-18 04:36:45.144 -07 000000610 INF: FPGA: Xmit ZDACW 37343\n [Z Motor]
17-03-18 04:36:45.144 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:36:45.154 -07 000000610 INF: FPGA: 'ZDACW 37343' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:45.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:45.154 -07 000000569 INF: FPGA: Recv ZDACR 37343
17-03-18 04:36:45.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:36:45.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.314 -07 000000591 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:36:45.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:45.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.324 -07 000000625 INF: FPGA: Recv ZSGSRD 35898
17-03-18 04:36:45.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.334 -07 000000579 INF: FPGA: Recv ZSGSRD 35900
17-03-18 04:36:45.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.344 -07 000000569 INF: FPGA: Recv ZSGSRD 35895
17-03-18 04:36:45.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.354 -07 000000447 INF: FPGA: Recv ZSGSRD 35900
17-03-18 04:36:45.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.364 -07 000000625 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:36:45.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.374 -07 000000579 INF: FPGA: Recv ZSGSRD 35894
17-03-18 04:36:45.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.384 -07 000000569 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:36:45.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.394 -07 000000608 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:36:45.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:45.404 -07 000000625 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:36:45.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:45.414 -07 000000480 INF: FPGA: Recv ZPIEZORD 31676
17-03-18 04:36:45.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:45.424 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.3 V.
17-03-18 04:36:45.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35900 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35901 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35894 (-170.0 uncal um), Max = 35906 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:36:45.424 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35900, posNoise = 6, negNoise = 6
17-03-18 04:36:45.424 -07 000000610 INF: Z Motor: After move to -0.170945, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:45.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:36:45.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:45.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:45.424 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:45.424 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:45.424 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:36:45.424 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:45.424 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:36:45.424 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:36:45.424 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:36:45.424 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:36:45.424 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:36:45.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:36:45.434 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:36:45.434 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:36:45.434 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:36:45.434 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:36:45.444 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:36:45.444 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:36:45.444 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:36:45.444 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:36:45.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37520 150\n [Camera]
17-03-18 04:36:45.654 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:36:46.074 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:36:46.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:36:46.074 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:46.074 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:46.074 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:36:46.074 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:36:46.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:36:46.074 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:46.074 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:46.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:36:46.264 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37520 808
17-03-18 04:36:46.414 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:36:46.474 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:36:46.474 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:36:46.474 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:46.474 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:46.474 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:36:46.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:36:46.474 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:36:46.484 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:46.484 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:46.494 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:36:46.624 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:36:46.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:36:46.744 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:36:46.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:46.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:36:46.744 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:46.744 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:46.744 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:46.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:36:46.754 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:46.754 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 584155952, 0x0, 391868352) start.
17-03-18 04:36:46.814 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:36:46.814 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:36:46.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37520 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-18 04:36:46.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:36:46.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.170952567900353. ------
17-03-18 04:36:46.814 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:46.824 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17780 mm
17-03-18 04:36:46.824 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:36:46.824 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:36:46.824 -07 000000625 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:36:46.824 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:47.144 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:36:47.144 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:36:47.144 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:47.144 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 584155952, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:36:47.144 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:36:47.144 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:47.154 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:36:47.154 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:36:47.154 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:36:47.154 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:36:47.164 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:47.164 -07 000000382 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:36:47.164 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 331 ms to get response, and 337 ms overall
17-03-18 04:36:47.164 -07 000000625 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:47.164 -07 000000625 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:36:47.164 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:36:47.164 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 340 ms to get response, and 342 ms overall
17-03-18 04:36:47.164 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:36:47.164 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38841, sync = True, waitForSettling = False)
17-03-18 04:36:47.164 -07 000000382 INF: Z Motor: Moving to -0.177803 mm, started at -0.170953 mm, distance = -6.85 um
17-03-18 04:36:47.174 -07 000000382 INF: FPGA: Xmit ZDACW 38841\n [Z Motor]
17-03-18 04:36:47.174 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:36:47.184 -07 000000382 INF: FPGA: 'ZDACW 38841' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:36:47.184 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:36:47.194 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:47.194 -07 000000502 INF: FPGA: Recv ZDACR 38841
17-03-18 04:36:47.204 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:36:47.204 -07 000000382 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:36:47.384 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:36:47.384 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:36:47.544 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:36:47.544 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 04:36:47.584 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:47.594 -07 000000474 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:36:47.594 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:36:47.594 -07 000000625 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:47.594 -07 000000625 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:36:47.594 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.217 mm/sec
17-03-18 04:36:48.514 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.042558,
17-03-18 04:36:48.544 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:48.544 -07 000000474 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:36:48.554 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:48.554 -07 000000625 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:48.584 -07 000000625 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:36:48.584 -07 000000625 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:36:48.584 -07 000000625 INF: Y Motor: Moved to 61.5635 after 1758 ms (table move)
17-03-18 04:36:48.584 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177803 mm (DAC = 38841)
17-03-18 04:36:48.584 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.584 -07 000000502 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:36:48.594 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:36:48.594 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.594 -07 000000590 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:36:48.604 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.604 -07 000000480 INF: FPGA: Recv ZSGSRD 36965
17-03-18 04:36:48.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.614 -07 000000502 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:36:48.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.624 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.624 -07 000000480 INF: FPGA: Recv ZSGSRD 36960
17-03-18 04:36:48.634 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.634 -07 000000382 INF: FPGA: Recv ZSGSRD 36963
17-03-18 04:36:48.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.644 -07 000000480 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:36:48.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.654 -07 000000625 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:36:48.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.664 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.664 -07 000000480 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:36:48.674 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.674 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:48.674 -07 000000382 INF: FPGA: Recv ZSGSRD 36968
17-03-18 04:36:48.684 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.684 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:48.684 -07 000000480 INF: FPGA: Recv ZPIEZORD 33148
17-03-18 04:36:48.694 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:48.694 -07 000000447 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 04:36:48.694 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36967 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36967 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36960 (-176.9 uncal um), Max = 36973 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:36:48.694 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36967, posNoise = 6, negNoise = 7
17-03-18 04:36:48.694 -07 000000447 INF: Z Motor: After move to -0.177803, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:48.694 -07 000000447 INF: Z Motor: Settle wait time = 1423 ms, measure time = 104 ms (allowed 150 ms), total time = 1527 ms
17-03-18 04:36:48.694 -07 000000447 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:36:48.744 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1919 ms
17-03-18 04:36:48.744 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:36:48.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:48.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:48.744 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:48.744 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:48.744 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:36:48.744 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:48.744 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:48.744 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:36:48.754 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:36:48.754 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:36:48.764 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:36:48.764 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:36:48.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:36:48.804 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:36:49.104 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:36:49.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:36:49.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:36:49.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 04:36:49.144 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:36:49.144 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:36:49.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:36:49.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 04:36:49.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:49.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:36:49.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:36:49.244 -07 000000590 INF: Autofocus start
17-03-18 04:36:49.244 -07 000000590 INF: MeasureProfile start
17-03-18 04:36:49.244 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:49.244 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:49.254 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:36:49.254 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:36:49.254 -07 000000590 INF: MeasureProfile done
17-03-18 04:36:49.254 -07 000000590 INF: X=-32  Z correction [um]=-0.2344
17-03-18 04:36:49.254 -07 000000590 INF: Autofocus finished
17-03-18 04:36:49.454 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:36:49.454 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:36:49.454 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177807202255612. ----------
17-03-18 04:36:49.454 -07 000000610 INF: Cycle	127	Tile	3	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:36:49.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37302, sync = True, waitForSettling = True)
17-03-18 04:36:49.464 -07 000000610 INF: Z Motor: Moving to -0.170758 mm, started at -0.177807 mm, distance = 7.05 um
17-03-18 04:36:49.464 -07 000000610 INF: FPGA: Xmit ZDACW 37302\n [Z Motor]
17-03-18 04:36:49.464 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:36:49.474 -07 000000610 INF: FPGA: 'ZDACW 37302' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:36:49.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:49.474 -07 000000447 INF: FPGA: Recv ZDACR 37302
17-03-18 04:36:49.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:36:49.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.634 -07 000000474 INF: FPGA: Recv ZSGSRD 35872
17-03-18 04:36:49.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:49.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.644 -07 000000382 INF: FPGA: Recv ZSGSRD 35874
17-03-18 04:36:49.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.654 -07 000000474 INF: FPGA: Recv ZSGSRD 35872
17-03-18 04:36:49.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.664 -07 000000581 INF: FPGA: Recv ZSGSRD 35871
17-03-18 04:36:49.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.674 -07 000000474 INF: FPGA: Recv ZSGSRD 35876
17-03-18 04:36:49.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35873
17-03-18 04:36:49.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.694 -07 000000502 INF: FPGA: Recv ZSGSRD 35873
17-03-18 04:36:49.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.704 -07 000000590 INF: FPGA: Recv ZSGSRD 35869
17-03-18 04:36:49.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.714 -07 000000591 INF: FPGA: Recv ZSGSRD 35872
17-03-18 04:36:49.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:49.724 -07 000000480 INF: FPGA: Recv ZSGSRD 35871
17-03-18 04:36:49.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:49.734 -07 000000591 INF: FPGA: Recv ZPIEZORD 31627
17-03-18 04:36:49.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:49.744 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.4 V.
17-03-18 04:36:49.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35872 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35872 (-169.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35869 (-169.9 uncal um), Max = 35876 (-169.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:36:49.744 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35872, posNoise = 4, negNoise = 3
17-03-18 04:36:49.744 -07 000000610 INF: Z Motor: After move to -0.170758, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:49.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:36:49.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:49.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:49.744 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:49.744 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:49.744 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:36:49.744 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:49.744 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:36:49.744 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:36:49.744 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:49.744 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:36:49.744 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:36:49.744 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:36:49.754 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:36:49.754 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:36:49.754 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:36:49.754 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:36:49.764 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 04:36:49.764 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:36:49.764 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 04:36:49.774 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:36:49.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37479 150\n [Camera]
17-03-18 04:36:49.974 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:36:50.394 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:36:50.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:36:50.394 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:50.394 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:36:50.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:36:50.394 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:50.404 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:50.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:36:50.404 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:50.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:36:50.584 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37479 808
17-03-18 04:36:50.734 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:36:50.804 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:36:50.804 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:36:50.804 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:50.804 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:36:50.804 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:36:50.804 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:50.804 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:50.804 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:36:50.804 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:50.914 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 04:36:50.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:36:50.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:36:50.944 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:50.944 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:36:50.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:36:50.944 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:50.944 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:50.944 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:36:50.944 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:50.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:36:51.134 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:36:51.134 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:36:51.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37479 150' command took 2 ms to send, 1352 ms to get response, and 1361 ms overall
17-03-18 04:36:51.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:36:51.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.170772689960384. ------
17-03-18 04:36:51.134 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:51.134 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17689 mm
17-03-18 04:36:51.134 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:36:51.144 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:36:51.144 -07 000000608 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 04:36:51.144 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:51.334 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:36:51.334 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:36:51.334 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:51.334 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:51.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:36:51.344 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:36:51.344 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:51.344 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:36:51.344 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:51.344 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:36:51.354 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:51.354 -07 000000591 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:36:51.354 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 216 ms overall
17-03-18 04:36:51.354 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 212 ms overall
17-03-18 04:36:51.354 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:36:51.354 -07 000000608 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:51.354 -07 000000608 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:36:51.354 -07 000000608 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:36:51.354 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38641, sync = True, waitForSettling = False)
17-03-18 04:36:51.354 -07 000000625 INF: Z Motor: Moving to -0.176887 mm, started at -0.170773 mm, distance = -6.11 um
17-03-18 04:36:51.364 -07 000000625 INF: FPGA: Xmit ZDACW 38641\n [Z Motor]
17-03-18 04:36:51.364 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:36:51.374 -07 000000625 INF: FPGA: 'ZDACW 38641' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:36:51.374 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:36:51.384 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:51.384 -07 000000591 INF: FPGA: Recv ZDACR 38641
17-03-18 04:36:51.394 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:36:51.394 -07 000000625 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 04:36:51.554 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:36:51.554 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-18 04:36:51.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:51.744 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:36:51.744 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:36:51.794 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:51.794 -07 000000480 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:36:51.804 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:36:51.804 -07 000000608 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:51.804 -07 000000608 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:36:51.804 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-18 04:36:52.754 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:52.754 -07 000000625 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:36:52.764 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.764 -07 000000608 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:52.784 -07 000000608 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:36:52.784 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:36:52.784 -07 000000608 INF: Y Motor: Moved to 62.3950 after 1647 ms (table move)
17-03-18 04:36:52.794 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176887 mm (DAC = 38641)
17-03-18 04:36:52.794 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.794 -07 000000625 INF: FPGA: Recv ZSGSRD 36825
17-03-18 04:36:52.804 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:52.804 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.804 -07 000000591 INF: FPGA: Recv ZSGSRD 36824
17-03-18 04:36:52.814 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.814 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.814 -07 000000591 INF: FPGA: Recv ZSGSRD 36821
17-03-18 04:36:52.824 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.824 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.824 -07 000000591 INF: FPGA: Recv ZSGSRD 36829
17-03-18 04:36:52.834 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.834 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.834 -07 000000591 INF: FPGA: Recv ZSGSRD 36823
17-03-18 04:36:52.844 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.844 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.844 -07 000000591 INF: FPGA: Recv ZSGSRD 36820
17-03-18 04:36:52.854 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.854 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.854 -07 000000625 INF: FPGA: Recv ZSGSRD 36822
17-03-18 04:36:52.864 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.864 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.864 -07 000000480 INF: FPGA: Recv ZSGSRD 36828
17-03-18 04:36:52.874 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.874 -07 000000591 INF: FPGA: Recv ZSGSRD 36824
17-03-18 04:36:52.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:52.884 -07 000000591 INF: FPGA: Recv ZSGSRD 36833
17-03-18 04:36:52.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.894 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:52.894 -07 000000608 INF: FPGA: Recv ZPIEZORD 32941
17-03-18 04:36:52.904 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:52.904 -07 000000590 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.896 V. Piezo Error = -8.6 V.
17-03-18 04:36:52.904 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36825 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36824 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36820 (-176.0 uncal um), Max = 36833 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:36:52.904 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36825, posNoise = 8, negNoise = 5
17-03-18 04:36:52.904 -07 000000590 INF: Z Motor: After move to -0.176887, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:52.904 -07 000000590 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-18 04:36:52.904 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:36:52.954 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-18 04:36:52.954 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:36:52.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:52.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:52.954 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:52.954 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:52.954 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:36:52.954 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:52.954 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:52.954 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:36:52.964 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:36:52.964 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:36:52.964 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:36:52.964 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:36:52.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:36:53.014 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:36:53.314 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:36:53.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:36:53.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:36:53.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 04:36:53.354 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:36:53.354 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:36:53.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 04:36:53.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:36:53.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:53.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:36:53.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:36:53.454 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:53.454 -07 000000625 INF: Autofocus start
17-03-18 04:36:53.454 -07 000000625 INF: MeasureProfile start
17-03-18 04:36:53.454 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:53.464 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:36:53.464 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:36:53.464 -07 000000625 INF: MeasureProfile done
17-03-18 04:36:53.464 -07 000000625 INF: X=64  Z correction [um]=0.2557664
17-03-18 04:36:53.464 -07 000000625 INF: Autofocus finished
17-03-18 04:36:53.664 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:36:53.664 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:36:53.674 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.176894964131482. ----------
17-03-18 04:36:53.674 -07 000000610 INF: Cycle	127	Tile	4	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:36:53.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37209, sync = True, waitForSettling = True)
17-03-18 04:36:53.674 -07 000000610 INF: Z Motor: Moving to -0.170332 mm, started at -0.176895 mm, distance = 6.56 um
17-03-18 04:36:53.674 -07 000000610 INF: FPGA: Xmit ZDACW 37209\n [Z Motor]
17-03-18 04:36:53.674 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:36:53.684 -07 000000610 INF: FPGA: 'ZDACW 37209' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:36:53.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:53.684 -07 000000591 INF: FPGA: Recv ZDACR 37209
17-03-18 04:36:53.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:53.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:36:53.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.844 -07 000000590 INF: FPGA: Recv ZSGSRD 35804
17-03-18 04:36:53.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:53.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.854 -07 000000625 INF: FPGA: Recv ZSGSRD 35810
17-03-18 04:36:53.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:53.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.864 -07 000000608 INF: FPGA: Recv ZSGSRD 35799
17-03-18 04:36:53.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:53.884 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.988112,
17-03-18 04:36:53.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.894 -07 000000591 INF: FPGA: Recv ZSGSRD 35806
17-03-18 04:36:53.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:36:53.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.914 -07 000000590 INF: FPGA: Recv ZSGSRD 35802
17-03-18 04:36:53.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:36:53.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.934 -07 000000625 INF: FPGA: Recv ZSGSRD 35807
17-03-18 04:36:53.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:36:53.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.944 -07 000000626 INF: FPGA: Recv ZSGSRD 35799
17-03-18 04:36:53.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:53.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.964 -07 000000625 INF: FPGA: Recv ZSGSRD 35804
17-03-18 04:36:53.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:36:53.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.974 -07 000000591 INF: FPGA: Recv ZSGSRD 35805
17-03-18 04:36:53.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:53.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:53.984 -07 000000590 INF: FPGA: Recv ZSGSRD 35805
17-03-18 04:36:53.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:53.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:53.994 -07 000000626 INF: FPGA: Recv ZPIEZORD 31577
17-03-18 04:36:54.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:54.004 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.3 V.
17-03-18 04:36:54.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35799 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:36:54.004 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 6, negNoise = 5
17-03-18 04:36:54.004 -07 000000610 INF: Z Motor: After move to -0.170332, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:54.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 04:36:54.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:54.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:54.004 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:54.004 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:54.004 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:36:54.004 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:36:54.004 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:36:54.004 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:54.004 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:36:54.004 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:36:54.004 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:36:54.004 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:36:54.014 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:36:54.014 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:36:54.014 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:36:54.014 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:36:54.024 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:36:54.024 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:36:54.024 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:36:54.024 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:36:54.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37386 150\n [Camera]
17-03-18 04:36:54.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:36:54.644 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:36:54.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:36:54.644 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:54.654 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:36:54.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:36:54.654 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:54.654 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:54.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) start.
17-03-18 04:36:54.654 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:54.654 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:36:54.844 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37386 808
17-03-18 04:36:54.994 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:36:55.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:36:55.024 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:36:55.024 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:55.034 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:55.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:36:55.034 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:36:55.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:55.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:55.034 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:36:55.044 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:36:55.194 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:36:55.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:36:55.194 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:55.194 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:36:55.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:36:55.194 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:55.204 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:55.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:36:55.204 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:55.204 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:36:55.384 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:36:55.384 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:36:55.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37386 150' command took 2 ms to send, 1356 ms to get response, and 1361 ms overall
17-03-18 04:36:55.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:36:55.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170335843534744. ------
17-03-18 04:36:55.394 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:55.394 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17695 mm
17-03-18 04:36:55.394 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:36:55.394 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:55.394 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:36:55.394 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:36:55.394 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38655, sync = True, waitForSettling = False)
17-03-18 04:36:55.394 -07 000000447 INF: Z Motor: Moving to -0.176951 mm, started at -0.170336 mm, distance = -6.62 um
17-03-18 04:36:55.404 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:55.404 -07 000000447 INF: FPGA: Xmit ZDACW 38655\n [Z Motor]
17-03-18 04:36:55.404 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:36:55.414 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:55.414 -07 000000447 INF: FPGA: 'ZDACW 38655' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:55.424 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:36:55.434 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:55.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:36:55.604 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:36:55.604 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:55.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:36:55.604 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:36:55.604 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:55.604 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:36:55.604 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:36:55.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:36:55.614 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:36:55.624 -07 000000480 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:36:55.624 -07 000000480 INF: FPGA: Recv ZDACR 38655
17-03-18 04:36:55.624 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 205 ms to get response, and 227 ms overall
17-03-18 04:36:55.624 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 185 ms to get response, and 215 ms overall
17-03-18 04:36:55.624 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:36:55.624 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 04:36:55.624 -07 000000447 INF: Z Motor: MoveAbsStepped took 227 ms (did NOT wait for settling yet))
17-03-18 04:36:55.624 -07 000000608 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:55.624 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:36:55.624 -07 000000608 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:36:55.624 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:36:56.004 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:36:56.004 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 04:36:56.054 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:56.064 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:36:56.064 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:36:56.064 -07 000000608 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:56.064 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:36:56.064 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 04:36:56.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:36:56.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:36:57.014 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:57.014 -07 000000447 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:36:57.024 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:36:57.024 -07 000000608 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:57.054 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:36:57.054 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:36:57.054 -07 000000608 INF: Y Motor: Moved to 63.2236 after 1651 ms (table move)
17-03-18 04:36:57.054 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176951 mm (DAC = 38655)
17-03-18 04:36:57.054 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36828
17-03-18 04:36:57.064 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:36:57.064 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.064 -07 000000569 INF: FPGA: Recv ZSGSRD 36829
17-03-18 04:36:57.074 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.074 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.074 -07 000000608 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:36:57.084 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.084 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.084 -07 000000480 INF: FPGA: Recv ZSGSRD 36826
17-03-18 04:36:57.094 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.094 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.094 -07 000000480 INF: FPGA: Recv ZSGSRD 36826
17-03-18 04:36:57.104 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.104 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.104 -07 000000480 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:36:57.114 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.114 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.114 -07 000000480 INF: FPGA: Recv ZSGSRD 36837
17-03-18 04:36:57.124 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.124 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.124 -07 000000608 INF: FPGA: Recv ZSGSRD 36842
17-03-18 04:36:57.134 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.134 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.134 -07 000000569 INF: FPGA: Recv ZSGSRD 36840
17-03-18 04:36:57.144 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:57.144 -07 000000480 INF: FPGA: Recv ZSGSRD 36837
17-03-18 04:36:57.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.154 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:57.154 -07 000000569 INF: FPGA: Recv ZPIEZORD 32988
17-03-18 04:36:57.164 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.164 -07 000000590 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.5 V.
17-03-18 04:36:57.164 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36834 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36835 (-176.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36826 (-176.0 uncal um), Max = 36842 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:36:57.164 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36834, posNoise = 8, negNoise = 8
17-03-18 04:36:57.164 -07 000000590 INF: Z Motor: After move to -0.176951, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:57.164 -07 000000590 INF: Z Motor: Settle wait time = 1655 ms, measure time = 106 ms (allowed 150 ms), total time = 1761 ms
17-03-18 04:36:57.164 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:36:57.214 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1816 ms
17-03-18 04:36:57.214 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:36:57.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:57.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:57.214 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:57.214 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:36:57.214 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:57.214 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:57.214 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:36:57.214 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:36:57.224 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:36:57.224 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:36:57.224 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:36:57.224 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:36:57.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:36:57.274 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:36:57.574 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:36:57.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:36:57.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:36:57.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 04:36:57.614 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:36:57.614 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:36:57.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:36:57.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:36:57.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:57.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:36:57.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:36:57.714 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:57.714 -07 000000447 INF: Autofocus start
17-03-18 04:36:57.714 -07 000000447 INF: MeasureProfile start
17-03-18 04:36:57.714 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:57.724 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:36:57.724 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:36:57.724 -07 000000447 INF: MeasureProfile done
17-03-18 04:36:57.724 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:36:57.724 -07 000000447 INF: Autofocus finished
17-03-18 04:36:57.924 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:36:57.924 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:36:57.924 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.176952782040758. ----------
17-03-18 04:36:57.924 -07 000000610 INF: Cycle	127	Tile	5	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:36:57.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37152, sync = True, waitForSettling = True)
17-03-18 04:36:57.934 -07 000000610 INF: Z Motor: Moving to -0.170071 mm, started at -0.176953 mm, distance = 6.88 um
17-03-18 04:36:57.934 -07 000000610 INF: FPGA: Xmit ZDACW 37152\n [Z Motor]
17-03-18 04:36:57.934 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:36:57.944 -07 000000610 INF: FPGA: 'ZDACW 37152' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:36:57.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:57.944 -07 000000447 INF: FPGA: Recv ZDACR 37152
17-03-18 04:36:57.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:57.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:36:58.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.104 -07 000000579 INF: FPGA: Recv ZSGSRD 35760
17-03-18 04:36:58.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.114 -07 000000590 INF: FPGA: Recv ZSGSRD 35763
17-03-18 04:36:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.124 -07 000000480 INF: FPGA: Recv ZSGSRD 35768
17-03-18 04:36:58.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.134 -07 000000447 INF: FPGA: Recv ZSGSRD 35762
17-03-18 04:36:58.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.144 -07 000000569 INF: FPGA: Recv ZSGSRD 35765
17-03-18 04:36:58.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.154 -07 000000590 INF: FPGA: Recv ZSGSRD 35763
17-03-18 04:36:58.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.164 -07 000000569 INF: FPGA: Recv ZSGSRD 35763
17-03-18 04:36:58.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.174 -07 000000447 INF: FPGA: Recv ZSGSRD 35769
17-03-18 04:36:58.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.184 -07 000000480 INF: FPGA: Recv ZSGSRD 35759
17-03-18 04:36:58.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:36:58.194 -07 000000590 INF: FPGA: Recv ZSGSRD 35764
17-03-18 04:36:58.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:36:58.204 -07 000000569 INF: FPGA: Recv ZPIEZORD 31512
17-03-18 04:36:58.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:58.214 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.4 V.
17-03-18 04:36:58.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35764 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35763 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35759 (-169.2 uncal um), Max = 35769 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:36:58.214 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35764, posNoise = 5, negNoise = 5
17-03-18 04:36:58.214 -07 000000610 INF: Z Motor: After move to -0.170071, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:36:58.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:36:58.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:36:58.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:36:58.214 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:36:58.214 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:36:58.214 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:36:58.214 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:36:58.214 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:36:58.214 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:36:58.214 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:36:58.214 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:36:58.214 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:36:58.214 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:36:58.224 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:36:58.224 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:36:58.224 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:36:58.224 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:36:58.244 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 04:36:58.244 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:36:58.244 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 04:36:58.244 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 04:36:58.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37329 150\n [Camera]
17-03-18 04:36:58.444 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:36:58.874 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-18 04:36:58.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-18 04:36:58.874 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:58.874 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-18 04:36:58.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-18 04:36:58.874 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:58.874 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:58.874 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:36:58.874 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:58.874 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:36:59.064 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37329 808
17-03-18 04:36:59.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:36:59.254 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:36:59.254 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:36:59.254 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:36:59.254 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:59.254 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:36:59.254 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:59.264 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:36:59.264 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:36:59.264 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:36:59.264 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:36:59.284 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.990831,
17-03-18 04:36:59.414 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:36:59.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:36:59.414 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:36:59.414 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:36:59.414 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:36:59.414 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:36:59.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:36:59.414 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:36:59.414 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:36:59.414 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:36:59.604 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:36:59.604 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:36:59.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37329 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:36:59.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:36:59.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170078875049074. ------
17-03-18 04:36:59.614 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:36:59.614 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17616 mm
17-03-18 04:36:59.614 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:36:59.614 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:36:59.614 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38483, sync = True, waitForSettling = False)
17-03-18 04:36:59.614 -07 000000626 INF: Z Motor: Moving to -0.176164 mm, started at -0.170079 mm, distance = -6.09 um
17-03-18 04:36:59.614 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:36:59.614 -07 000000591 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:36:59.624 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:36:59.624 -07 000000626 INF: FPGA: Xmit ZDACW 38483\n [Z Motor]
17-03-18 04:36:59.624 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:36:59.634 -07 000000626 INF: FPGA: 'ZDACW 38483' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:36:59.634 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:36:59.634 -07 000000579 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:36:59.644 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:36:59.644 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:36:59.644 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:36:59.644 -07 000000591 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:36:59.644 -07 000000591 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:36:59.654 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:36:59.654 -07 000000608 INF: FPGA: Recv ZDACR 38483
17-03-18 04:36:59.664 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:36:59.664 -07 000000626 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:36:59.664 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:36:59.794 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:36:59.794 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:36:59.804 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:59.804 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:59.804 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:36:59.804 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:36:59.804 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:36:59.804 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:36:59.804 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:36:59.814 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:36:59.844 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:36:59.844 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:37:00.034 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:37:00.034 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:37:00.084 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:00.084 -07 000000447 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:37:00.094 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:00.094 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:00.094 -07 000000591 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:37:00.094 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 04:37:01.044 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:01.044 -07 000000447 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:37:01.054 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:01.054 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:01.074 -07 000000591 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:01.074 -07 000000591 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:01.074 -07 000000591 INF: Y Motor: Moved to 64.0562 after 1464 ms (table move)
17-03-18 04:37:01.084 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176164 mm (DAC = 38483)
17-03-18 04:37:01.084 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.084 -07 000000626 INF: FPGA: Recv ZSGSRD 36716
17-03-18 04:37:01.094 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:01.094 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.094 -07 000000626 INF: FPGA: Recv ZSGSRD 36711
17-03-18 04:37:01.104 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.104 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.104 -07 000000626 INF: FPGA: Recv ZSGSRD 36712
17-03-18 04:37:01.114 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.114 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.114 -07 000000626 INF: FPGA: Recv ZSGSRD 36711
17-03-18 04:37:01.124 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.124 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.124 -07 000000626 INF: FPGA: Recv ZSGSRD 36712
17-03-18 04:37:01.134 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.134 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.134 -07 000000626 INF: FPGA: Recv ZSGSRD 36712
17-03-18 04:37:01.144 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.144 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.144 -07 000000591 INF: FPGA: Recv ZSGSRD 36711
17-03-18 04:37:01.154 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.154 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.154 -07 000000626 INF: FPGA: Recv ZSGSRD 36713
17-03-18 04:37:01.164 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.164 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.164 -07 000000590 INF: FPGA: Recv ZSGSRD 36713
17-03-18 04:37:01.174 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.174 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:01.174 -07 000000590 INF: FPGA: Recv ZSGSRD 36712
17-03-18 04:37:01.184 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.184 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:01.184 -07 000000591 INF: FPGA: Recv ZPIEZORD 32805
17-03-18 04:37:01.194 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.194 -07 000000480 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.6 V.
17-03-18 04:37:01.194 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36712 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36712 (-175.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36711 (-175.3 uncal um), Max = 36716 (-175.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 04:37:01.194 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36712, posNoise = 4, negNoise = 1
17-03-18 04:37:01.194 -07 000000480 INF: Z Motor: After move to -0.176164, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:01.194 -07 000000480 INF: Z Motor: Settle wait time = 1470 ms, measure time = 106 ms (allowed 150 ms), total time = 1576 ms
17-03-18 04:37:01.194 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:01.244 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:37:01.244 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:01.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:01.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:01.244 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:01.244 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:01.244 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:01.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:01.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:01.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:01.254 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:01.254 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:01.254 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:37:01.254 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:37:01.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:01.304 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:01.604 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:01.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:01.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:01.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:37:01.644 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:01.644 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:01.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:37:01.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:01.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:37:01.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:01.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:01.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:37:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:01.744 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:01.744 -07 000000480 INF: Autofocus start
17-03-18 04:37:01.744 -07 000000480 INF: MeasureProfile start
17-03-18 04:37:01.744 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:01.754 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:01.754 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:01.754 -07 000000480 INF: MeasureProfile done
17-03-18 04:37:01.754 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:37:01.754 -07 000000480 INF: Autofocus finished
17-03-18 04:37:01.954 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:01.954 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:01.954 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176169028159463. ----------
17-03-18 04:37:01.964 -07 000000610 INF: Cycle	127	Tile	6	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:01.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36980, sync = True, waitForSettling = True)
17-03-18 04:37:01.964 -07 000000610 INF: Z Motor: Moving to -0.169284 mm, started at -0.176169 mm, distance = 6.89 um
17-03-18 04:37:01.964 -07 000000610 INF: FPGA: Xmit ZDACW 36980\n [Z Motor]
17-03-18 04:37:01.964 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:37:01.974 -07 000000610 INF: FPGA: 'ZDACW 36980' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:01.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:01.974 -07 000000447 INF: FPGA: Recv ZDACR 36980
17-03-18 04:37:01.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:01.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:02.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.134 -07 000000480 INF: FPGA: Recv ZSGSRD 35642
17-03-18 04:37:02.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.144 -07 000000447 INF: FPGA: Recv ZSGSRD 35642
17-03-18 04:37:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.154 -07 000000590 INF: FPGA: Recv ZSGSRD 35643
17-03-18 04:37:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.164 -07 000000480 INF: FPGA: Recv ZSGSRD 35639
17-03-18 04:37:02.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.174 -07 000000447 INF: FPGA: Recv ZSGSRD 35634
17-03-18 04:37:02.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:02.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35642
17-03-18 04:37:02.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.194 -07 000000480 INF: FPGA: Recv ZSGSRD 35644
17-03-18 04:37:02.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.204 -07 000000447 INF: FPGA: Recv ZSGSRD 35645
17-03-18 04:37:02.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.214 -07 000000480 INF: FPGA: Recv ZSGSRD 35639
17-03-18 04:37:02.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:02.224 -07 000000447 INF: FPGA: Recv ZSGSRD 35641
17-03-18 04:37:02.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:02.234 -07 000000626 INF: FPGA: Recv ZPIEZORD 31406
17-03-18 04:37:02.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:02.244 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.3 V.
17-03-18 04:37:02.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35641 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35642 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35634 (-168.4 uncal um), Max = 35645 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:37:02.244 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35641, posNoise = 4, negNoise = 7
17-03-18 04:37:02.244 -07 000000610 INF: Z Motor: After move to -0.169284, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:02.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:37:02.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:02.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:02.244 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:02.244 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:02.244 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:02.244 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:02.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:02.244 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:02.254 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:02.254 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:02.254 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:02.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:02.254 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:02.254 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:02.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:02.254 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:02.264 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:37:02.264 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:37:02.264 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:37:02.264 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:02.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37157 150\n [Camera]
17-03-18 04:37:02.464 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:02.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:02.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:02.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:02.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:02.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:37:02.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:02.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:02.894 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:02.894 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:02.894 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:37:03.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37157 808
17-03-18 04:37:03.234 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:03.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:37:03.284 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:37:03.284 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:03.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:37:03.294 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:37:03.294 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:37:03.294 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:37:03.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:03.294 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:03.304 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:37:03.434 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:03.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:03.434 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:03.434 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:03.434 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:37:03.434 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:03.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:03.434 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:03.434 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:03.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:37:03.624 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:37:03.624 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:03.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37157 150' command took 2 ms to send, 1356 ms to get response, and 1361 ms overall
17-03-18 04:37:03.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:03.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169288696955637. ------
17-03-18 04:37:03.634 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:03.634 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17570 mm
17-03-18 04:37:03.634 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:03.634 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:03.634 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:37:03.634 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 04:37:03.634 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38382, sync = True, waitForSettling = False)
17-03-18 04:37:03.634 -07 000000591 INF: Z Motor: Moving to -0.175702 mm, started at -0.169289 mm, distance = -6.41 um
17-03-18 04:37:03.644 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:03.644 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:03.644 -07 000000474 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:37:03.654 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:37:03.654 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:03.654 -07 000000591 INF: FPGA: Xmit ZDACW 38382\n [Z Motor]
17-03-18 04:37:03.654 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:37:03.654 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:03.654 -07 000000447 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:37:03.664 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:03.664 -07 000000591 INF: FPGA: 'ZDACW 38382' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:37:03.674 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:03.684 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:03.684 -07 000000480 INF: FPGA: Recv ZDACR 38382
17-03-18 04:37:03.694 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:03.694 -07 000000591 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:37:03.834 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:37:03.834 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:37:03.834 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:03.834 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:37:03.834 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:37:03.834 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:03.844 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:03.844 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:37:03.844 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:37:03.844 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:37:03.864 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:03.864 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:37:04.044 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:37:04.044 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:37:04.094 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:04.094 -07 000000608 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:37:04.104 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:04.104 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:04.104 -07 000000447 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:37:04.104 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.836 mm, average velocity = 2.128 mm/sec
17-03-18 04:37:04.644 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.983999,
17-03-18 04:37:05.054 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:05.054 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:37:05.064 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:05.064 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:05.094 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:05.094 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:05.094 -07 000000447 INF: Y Motor: Moved to 64.8784 after 1456 ms (table move)
17-03-18 04:37:05.094 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175702 mm (DAC = 38382)
17-03-18 04:37:05.094 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.094 -07 000000591 INF: FPGA: Recv ZSGSRD 36640
17-03-18 04:37:05.104 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:05.104 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.104 -07 000000569 INF: FPGA: Recv ZSGSRD 36638
17-03-18 04:37:05.114 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.114 -07 000000447 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:37:05.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.124 -07 000000626 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:37:05.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.134 -07 000000591 INF: FPGA: Recv ZSGSRD 36638
17-03-18 04:37:05.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.144 -07 000000474 INF: FPGA: Recv ZSGSRD 36642
17-03-18 04:37:05.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.154 -07 000000591 INF: FPGA: Recv ZSGSRD 36638
17-03-18 04:37:05.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.164 -07 000000474 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:37:05.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.174 -07 000000480 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:37:05.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:05.184 -07 000000591 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:37:05.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.194 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:05.194 -07 000000591 INF: FPGA: Recv ZPIEZORD 32716
17-03-18 04:37:05.204 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.204 -07 000000625 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.7 V.
17-03-18 04:37:05.204 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36640 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36639 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36636 (-174.8 uncal um), Max = 36651 (-174.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:37:05.204 -07 000000625 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36640, posNoise = 11, negNoise = 4
17-03-18 04:37:05.204 -07 000000625 INF: Z Motor: After move to -0.175702, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:05.204 -07 000000625 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:37:05.204 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:05.254 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:37:05.254 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:05.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:05.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:05.254 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:05.254 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:05.254 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:05.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:05.264 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:05.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:05.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:05.264 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:05.274 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:37:05.274 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:37:05.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:05.314 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:05.614 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:05.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:05.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:05.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 04:37:05.654 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:05.654 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:05.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:37:05.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:37:05.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:05.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:37:05.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:37:05.754 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:05.754 -07 000000581 INF: Autofocus start
17-03-18 04:37:05.754 -07 000000581 INF: MeasureProfile start
17-03-18 04:37:05.754 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:05.764 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:05.764 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:05.764 -07 000000581 INF: MeasureProfile done
17-03-18 04:37:05.764 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:37:05.764 -07 000000581 INF: Autofocus finished
17-03-18 04:37:05.964 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:05.964 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-18 04:37:05.964 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175706484885256. ----------
17-03-18 04:37:05.974 -07 000000610 INF: Cycle	127	Tile	7	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:05.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36914, sync = True, waitForSettling = True)
17-03-18 04:37:05.974 -07 000000610 INF: Z Motor: Moving to -0.168981 mm, started at -0.175706 mm, distance = 6.73 um
17-03-18 04:37:05.974 -07 000000610 INF: FPGA: Xmit ZDACW 36914\n [Z Motor]
17-03-18 04:37:05.974 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:37:05.984 -07 000000610 INF: FPGA: 'ZDACW 36914' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:05.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:05.984 -07 000000625 INF: FPGA: Recv ZDACR 36914
17-03-18 04:37:05.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:05.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:06.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.144 -07 000000591 INF: FPGA: Recv ZSGSRD 35592
17-03-18 04:37:06.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:06.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.154 -07 000000591 INF: FPGA: Recv ZSGSRD 35598
17-03-18 04:37:06.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35591
17-03-18 04:37:06.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.174 -07 000000591 INF: FPGA: Recv ZSGSRD 35595
17-03-18 04:37:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.184 -07 000000474 INF: FPGA: Recv ZSGSRD 35593
17-03-18 04:37:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.194 -07 000000480 INF: FPGA: Recv ZSGSRD 35594
17-03-18 04:37:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.204 -07 000000591 INF: FPGA: Recv ZSGSRD 35599
17-03-18 04:37:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.214 -07 000000591 INF: FPGA: Recv ZSGSRD 35594
17-03-18 04:37:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35593
17-03-18 04:37:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:06.234 -07 000000625 INF: FPGA: Recv ZSGSRD 35592
17-03-18 04:37:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:06.244 -07 000000474 INF: FPGA: Recv ZPIEZORD 31340
17-03-18 04:37:06.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:06.254 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.4 V.
17-03-18 04:37:06.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35594 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35591 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:37:06.254 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35594, posNoise = 5, negNoise = 3
17-03-18 04:37:06.254 -07 000000610 INF: Z Motor: After move to -0.168981, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:06.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:37:06.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:06.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:06.254 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:06.254 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:06.254 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:06.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:06.254 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:06.254 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:06.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:06.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:06.254 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:06.254 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:06.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:06.254 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:06.254 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:06.264 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:06.264 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:37:06.264 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:06.264 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:37:06.264 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:37:06.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37091 150\n [Camera]
17-03-18 04:37:06.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:37:06.684 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:06.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:06.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:06.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:06.894 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:06.894 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:06.894 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:37:06.894 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:06.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:06.894 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:06.894 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:06.894 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:37:07.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37091 808
17-03-18 04:37:07.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:07.274 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:37:07.274 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:37:07.274 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:07.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:37:07.274 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:37:07.274 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:07.274 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:07.274 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:07.274 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:37:07.284 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:37:07.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:07.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:07.444 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:07.444 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:07.444 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 04:37:07.444 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:07.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:07.444 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:07.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:07.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:37:07.634 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:37:07.634 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:07.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37091 150' command took 4 ms to send, 1352 ms to get response, and 1360 ms overall
17-03-18 04:37:07.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:07.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.168986758984974. ------
17-03-18 04:37:07.634 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:07.634 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17555 mm
17-03-18 04:37:07.634 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:07.644 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:37:07.644 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:37:07.644 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:07.644 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:07.644 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:37:07.644 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38348, sync = True, waitForSettling = False)
17-03-18 04:37:07.644 -07 000000424 INF: Z Motor: Moving to -0.175546 mm, started at -0.168987 mm, distance = -6.56 um
17-03-18 04:37:07.644 -07 000000474 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:37:07.654 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:07.654 -07 000000579 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:07.654 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:07.654 -07 000000579 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:37:07.654 -07 000000424 INF: FPGA: Xmit ZDACW 38348\n [Z Motor]
17-03-18 04:37:07.654 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:37:07.664 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:07.664 -07 000000424 INF: FPGA: 'ZDACW 38348' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:37:07.674 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:07.684 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:07.684 -07 000000474 INF: FPGA: Recv ZDACR 38348
17-03-18 04:37:07.694 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:07.694 -07 000000424 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:37:07.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:37:07.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:37:07.844 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:07.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:37:07.844 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:37:07.844 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:07.844 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:07.854 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:37:07.854 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:37:07.854 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:37:07.864 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:07.864 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 04:37:08.044 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:37:08.044 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:37:08.094 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:08.104 -07 000000608 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:37:08.104 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:37:08.104 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:08.104 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:37:08.104 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:37:09.054 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:09.054 -07 000000608 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:37:09.064 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:09.064 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:09.094 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:09.094 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:09.094 -07 000000579 INF: Y Motor: Moved to 65.7134 after 1456 ms (table move)
17-03-18 04:37:09.104 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175546 mm (DAC = 38348)
17-03-18 04:37:09.104 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.104 -07 000000501 INF: FPGA: Recv ZSGSRD 36616
17-03-18 04:37:09.114 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:09.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.114 -07 000000480 INF: FPGA: Recv ZSGSRD 36621
17-03-18 04:37:09.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.124 -07 000000501 INF: FPGA: Recv ZSGSRD 36622
17-03-18 04:37:09.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.134 -07 000000424 INF: FPGA: Recv ZSGSRD 36621
17-03-18 04:37:09.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:09.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.144 -07 000000424 INF: FPGA: Recv ZSGSRD 36619
17-03-18 04:37:09.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.154 -07 000000608 INF: FPGA: Recv ZSGSRD 36611
17-03-18 04:37:09.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.164 -07 000000424 INF: FPGA: Recv ZSGSRD 36614
17-03-18 04:37:09.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.174 -07 000000608 INF: FPGA: Recv ZSGSRD 36618
17-03-18 04:37:09.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.184 -07 000000424 INF: FPGA: Recv ZSGSRD 36621
17-03-18 04:37:09.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:09.194 -07 000000424 INF: FPGA: Recv ZSGSRD 36619
17-03-18 04:37:09.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.204 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:09.204 -07 000000424 INF: FPGA: Recv ZPIEZORD 32671
17-03-18 04:37:09.214 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:09.214 -07 000000625 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.7 V.
17-03-18 04:37:09.214 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36618 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36619 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36622 (-174.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:37:09.214 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36618, posNoise = 4, negNoise = 7
17-03-18 04:37:09.214 -07 000000625 INF: Z Motor: After move to -0.175546, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:09.214 -07 000000625 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:37:09.214 -07 000000625 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:09.254 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:37:09.254 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:09.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:09.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:09.254 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:09.254 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:09.254 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:09.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:09.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:37:09.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:09.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:09.264 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:09.274 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:37:09.274 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:37:09.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:09.324 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:09.624 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:09.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:09.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:09.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 04:37:09.664 -07 000000382 INF: FPGA: Recv @CAMSNAP 385
17-03-18 04:37:09.664 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:09.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 387 ms to get response, and 391 ms overall
17-03-18 04:37:09.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:37:09.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:09.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:37:09.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:37:09.764 -07 000000424 INF: Autofocus start
17-03-18 04:37:09.764 -07 000000424 INF: MeasureProfile start
17-03-18 04:37:09.764 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:09.774 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:09.774 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 04:37:09.774 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:09.774 -07 000000424 INF: MeasureProfile done
17-03-18 04:37:09.774 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:37:09.774 -07 000000424 INF: Autofocus finished
17-03-18 04:37:09.974 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:09.974 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:37:09.974 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175565152218138. ----------
17-03-18 04:37:09.974 -07 000000610 INF: Cycle	127	Tile	8	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:09.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36881, sync = True, waitForSettling = True)
17-03-18 04:37:09.984 -07 000000610 INF: Z Motor: Moving to -0.168830 mm, started at -0.175565 mm, distance = 6.73 um
17-03-18 04:37:09.984 -07 000000610 INF: FPGA: Xmit ZDACW 36881\n [Z Motor]
17-03-18 04:37:09.984 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:37:09.994 -07 000000610 INF: FPGA: 'ZDACW 36881' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:10.004 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.007176,
17-03-18 04:37:10.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:10.014 -07 000000480 INF: FPGA: Recv ZDACR 36881
17-03-18 04:37:10.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:10.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:10.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.174 -07 000000424 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:37:10.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:10.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.184 -07 000000581 INF: FPGA: Recv ZSGSRD 35572
17-03-18 04:37:10.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.194 -07 000000501 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:37:10.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:37:10.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.214 -07 000000579 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:37:10.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.224 -07 000000424 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:37:10.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:37:10.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.244 -07 000000501 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:37:10.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.254 -07 000000501 INF: FPGA: Recv ZSGSRD 35571
17-03-18 04:37:10.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:10.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35571
17-03-18 04:37:10.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:10.274 -07 000000581 INF: FPGA: Recv ZPIEZORD 31278
17-03-18 04:37:10.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:10.284 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.5 V.
17-03-18 04:37:10.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35571 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35571 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35569 (-168.0 uncal um), Max = 35573 (-168.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:37:10.284 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35571, posNoise = 2, negNoise = 2
17-03-18 04:37:10.284 -07 000000610 INF: Z Motor: After move to -0.168830, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:10.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 297 ms)
17-03-18 04:37:10.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:10.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:10.284 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:10.284 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:10.284 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:10.284 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:10.284 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:10.284 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:10.284 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:10.284 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:10.284 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:10.284 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:10.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:10.294 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:10.294 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:10.294 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:10.304 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:37:10.304 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:10.304 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:37:10.304 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:10.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 37058 150\n [Camera]
17-03-18 04:37:10.504 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:10.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:10.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:10.924 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:10.924 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:10.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:37:10.924 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:10.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:10.924 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:10.934 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:10.934 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:37:11.114 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37058 808
17-03-18 04:37:11.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:11.314 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:37:11.314 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:37:11.314 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:11.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:37:11.314 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:37:11.314 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:11.314 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:11.314 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:37:11.314 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:37:11.324 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:37:11.474 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1163
17-03-18 04:37:11.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1163
17-03-18 04:37:11.474 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:11.474 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:11.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:37:11.474 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1163
17-03-18 04:37:11.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1163
17-03-18 04:37:11.474 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:11.614 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:11.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:37:11.664 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1355
17-03-18 04:37:11.664 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:11.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 37058 150' command took 2 ms to send, 1355 ms to get response, and 1362 ms overall
17-03-18 04:37:11.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:11.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168839002105714. ------
17-03-18 04:37:11.674 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:11.674 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17528 mm
17-03-18 04:37:11.674 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:11.674 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:11.674 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:37:11.674 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:37:11.674 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38289, sync = True, waitForSettling = False)
17-03-18 04:37:11.674 -07 000000590 INF: Z Motor: Moving to -0.175276 mm, started at -0.168839 mm, distance = -6.44 um
17-03-18 04:37:11.684 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:11.684 -07 000000590 INF: FPGA: Xmit ZDACW 38289\n [Z Motor]
17-03-18 04:37:11.684 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:37:11.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:11.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:11.694 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:11.694 -07 000000590 INF: FPGA: 'ZDACW 38289' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:37:11.694 -07 000000608 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:37:11.704 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:11.704 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:37:11.704 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:11.704 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:11.704 -07 000000424 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:37:11.714 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:11.714 -07 000000608 INF: FPGA: Recv ZDACR 38289
17-03-18 04:37:11.724 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:11.724 -07 000000590 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:37:11.724 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:11.874 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:37:11.874 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:37:11.874 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:11.884 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:37:11.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:37:11.904 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:11.904 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:37:11.994 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:37:11.994 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:37:11.994 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:11.994 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:37:12.004 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 04:37:12.104 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:37:12.104 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 04:37:12.154 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:12.154 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:37:12.164 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:12.164 -07 000000424 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:12.164 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:37:12.164 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.839 mm, average velocity = 2.098 mm/sec
17-03-18 04:37:13.114 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:13.114 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:37:13.124 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:13.124 -07 000000424 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:13.154 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:13.154 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:13.154 -07 000000424 INF: Y Motor: Moved to 66.5381 after 1477 ms (table move)
17-03-18 04:37:13.154 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175276 mm (DAC = 38289)
17-03-18 04:37:13.154 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.154 -07 000000608 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:37:13.164 -07 000000480 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:13.164 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.164 -07 000000608 INF: FPGA: Recv ZSGSRD 36571
17-03-18 04:37:13.174 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.174 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.174 -07 000000608 INF: FPGA: Recv ZSGSRD 36573
17-03-18 04:37:13.184 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.184 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.184 -07 000000608 INF: FPGA: Recv ZSGSRD 36578
17-03-18 04:37:13.194 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.194 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.194 -07 000000579 INF: FPGA: Recv ZSGSRD 36575
17-03-18 04:37:13.204 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.204 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.204 -07 000000579 INF: FPGA: Recv ZSGSRD 36581
17-03-18 04:37:13.214 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.214 -07 000000382 INF: FPGA: Recv ZSGSRD 36572
17-03-18 04:37:13.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.224 -07 000000608 INF: FPGA: Recv ZSGSRD 36572
17-03-18 04:37:13.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.234 -07 000000626 INF: FPGA: Recv ZSGSRD 36572
17-03-18 04:37:13.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:13.244 -07 000000579 INF: FPGA: Recv ZSGSRD 36569
17-03-18 04:37:13.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.254 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:13.254 -07 000000608 INF: FPGA: Recv ZPIEZORD 32634
17-03-18 04:37:13.264 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:13.264 -07 000000480 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.7 V.
17-03-18 04:37:13.264 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36574 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36572 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36569 (-174.4 uncal um), Max = 36581 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:13.264 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36574, posNoise = 7, negNoise = 5
17-03-18 04:37:13.264 -07 000000480 INF: Z Motor: After move to -0.175276, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:13.264 -07 000000480 INF: Z Motor: Settle wait time = 1480 ms, measure time = 105 ms (allowed 150 ms), total time = 1585 ms
17-03-18 04:37:13.264 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:13.314 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 04:37:13.314 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:13.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:13.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:13.314 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:13.314 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:13.314 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:13.314 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:13.314 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:13.314 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:13.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:13.324 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:13.334 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:37:13.334 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:37:13.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:13.384 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:13.684 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:13.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:13.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:13.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 04:37:13.724 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:13.724 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:13.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:37:13.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 04:37:13.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:13.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:13.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:37:13.824 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:13.824 -07 000000608 INF: Autofocus start
17-03-18 04:37:13.824 -07 000000608 INF: MeasureProfile start
17-03-18 04:37:13.834 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:13.834 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:13.834 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:13.834 -07 000000608 INF: MeasureProfile done
17-03-18 04:37:13.834 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:37:13.844 -07 000000608 INF: Autofocus finished
17-03-18 04:37:14.034 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:14.034 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:14.034 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.1752824868839. ----------
17-03-18 04:37:14.044 -07 000000610 INF: Cycle	127	Tile	9	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:14.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-18 04:37:14.044 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.175282 mm, distance = 6.80 um
17-03-18 04:37:14.044 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-18 04:37:14.044 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:37:14.054 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:14.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:14.054 -07 000000382 INF: FPGA: Recv ZDACR 36804
17-03-18 04:37:14.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:14.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:37:14.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:14.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.224 -07 000000608 INF: FPGA: Recv ZSGSRD 35509
17-03-18 04:37:14.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:37:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.244 -07 000000382 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:37:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.254 -07 000000608 INF: FPGA: Recv ZSGSRD 35516
17-03-18 04:37:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.264 -07 000000590 INF: FPGA: Recv ZSGSRD 35514
17-03-18 04:37:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.274 -07 000000501 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:37:14.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.284 -07 000000382 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:37:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.294 -07 000000608 INF: FPGA: Recv ZSGSRD 35515
17-03-18 04:37:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:14.304 -07 000000590 INF: FPGA: Recv ZSGSRD 35511
17-03-18 04:37:14.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:14.314 -07 000000608 INF: FPGA: Recv ZPIEZORD 31215
17-03-18 04:37:14.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:14.324 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.5 V.
17-03-18 04:37:14.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35516 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35509 (-167.6 uncal um), Max = 35520 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:37:14.324 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35516, posNoise = 4, negNoise = 7
17-03-18 04:37:14.324 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:14.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 04:37:14.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:14.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:14.334 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:14.334 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:14.334 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:14.334 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:14.334 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:14.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:14.334 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:14.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:14.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:14.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:14.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:14.334 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:14.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:37:14.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:14.344 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:37:14.344 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:37:14.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:37:14.344 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:37:14.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36980 150\n [Camera]
17-03-18 04:37:14.544 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:14.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:37:14.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:37:14.974 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:14.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:37:14.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:37:14.974 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:14.984 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:14.984 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) start.
17-03-18 04:37:14.984 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:14.984 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2589968544, 0x0, 418435064) start.
17-03-18 04:37:15.164 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36980 810
17-03-18 04:37:15.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:15.354 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2589968544, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:37:15.354 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:37:15.354 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:15.354 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:37:15.354 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:37:15.354 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:15.364 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:37:15.364 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:37:15.364 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:37:15.374 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.016692,
17-03-18 04:37:15.374 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:37:15.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:15.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:15.514 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:15.524 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:15.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:15.524 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:15.644 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:15.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:37:15.644 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:15.644 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:37:15.704 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:15.714 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:15.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36980 150' command took 2 ms to send, 1350 ms to get response, and 1361 ms overall
17-03-18 04:37:15.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:15.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168485670437917. ------
17-03-18 04:37:15.714 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:15.714 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17527 mm
17-03-18 04:37:15.714 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:15.714 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:37:15.714 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:37:15.714 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:15.724 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:15.724 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:15.724 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38287, sync = True, waitForSettling = False)
17-03-18 04:37:15.724 -07 000000625 INF: Z Motor: Moving to -0.175267 mm, started at -0.168486 mm, distance = -6.78 um
17-03-18 04:37:15.724 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:37:15.734 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:15.734 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:15.734 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:15.734 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:15.734 -07 000000608 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:37:15.744 -07 000000625 INF: FPGA: Xmit ZDACW 38287\n [Z Motor]
17-03-18 04:37:15.744 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:37:15.754 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:15.754 -07 000000625 INF: FPGA: 'ZDACW 38287' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:15.764 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:15.764 -07 000000501 INF: FPGA: Recv ZDACR 38287
17-03-18 04:37:15.774 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:37:15.774 -07 000000625 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:37:15.934 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:15.934 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:37:16.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:37:16.034 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:37:16.034 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:16.034 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:37:16.034 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:37:16.034 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:16.044 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:16.044 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 04:37:16.044 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:16.054 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 04:37:16.124 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:37:16.124 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:37:16.174 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:16.174 -07 000000590 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:37:16.184 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:16.184 -07 000000608 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:16.184 -07 000000608 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:37:16.184 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 04:37:16.684 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:16.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:17.134 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:17.134 -07 000000626 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:37:17.144 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:17.144 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:17.174 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:17.174 -07 000000608 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:37:17.174 -07 000000608 INF: Y Motor: Moved to 67.3716 after 1451 ms (table move)
17-03-18 04:37:17.174 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175267 mm (DAC = 38287)
17-03-18 04:37:17.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.174 -07 000000626 INF: FPGA: Recv ZSGSRD 36575
17-03-18 04:37:17.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:17.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.184 -07 000000424 INF: FPGA: Recv ZSGSRD 36565
17-03-18 04:37:17.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.194 -07 000000581 INF: FPGA: Recv ZSGSRD 36571
17-03-18 04:37:17.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.204 -07 000000382 INF: FPGA: Recv ZSGSRD 36573
17-03-18 04:37:17.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.214 -07 000000581 INF: FPGA: Recv ZSGSRD 36565
17-03-18 04:37:17.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.224 -07 000000382 INF: FPGA: Recv ZSGSRD 36568
17-03-18 04:37:17.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.234 -07 000000424 INF: FPGA: Recv ZSGSRD 36574
17-03-18 04:37:17.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.244 -07 000000579 INF: FPGA: Recv ZSGSRD 36560
17-03-18 04:37:17.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.254 -07 000000501 INF: FPGA: Recv ZSGSRD 36572
17-03-18 04:37:17.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:17.264 -07 000000626 INF: FPGA: Recv ZSGSRD 36568
17-03-18 04:37:17.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.274 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:17.274 -07 000000501 INF: FPGA: Recv ZPIEZORD 32624
17-03-18 04:37:17.284 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:17.284 -07 000000447 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.7 V.
17-03-18 04:37:17.284 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36569 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36570 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36560 (-174.3 uncal um), Max = 36575 (-174.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:37:17.284 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36569, posNoise = 6, negNoise = 9
17-03-18 04:37:17.284 -07 000000447 INF: Z Motor: After move to -0.175267, error = 0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:17.284 -07 000000447 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:37:17.284 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:17.334 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:37:17.334 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:17.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:17.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:17.334 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:17.334 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:17.334 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:17.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:17.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:37:17.334 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:17.344 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:17.344 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:17.344 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:37:17.344 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:37:17.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:17.394 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:17.694 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:17.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:17.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:17.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 04:37:17.734 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:17.734 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:17.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:37:17.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:37:17.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:17.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:17.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:37:17.834 -07 000000501 INF: Autofocus start
17-03-18 04:37:17.834 -07 000000501 INF: MeasureProfile start
17-03-18 04:37:17.834 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:17.834 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:17.844 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:17.844 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:17.844 -07 000000501 INF: MeasureProfile done
17-03-18 04:37:17.844 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:37:17.844 -07 000000501 INF: Autofocus finished
17-03-18 04:37:18.044 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:18.044 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:18.044 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175250365823191. ----------
17-03-18 04:37:18.044 -07 000000610 INF: Cycle	127	Tile	10	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:18.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36802, sync = True, waitForSettling = True)
17-03-18 04:37:18.054 -07 000000610 INF: Z Motor: Moving to -0.168469 mm, started at -0.175250 mm, distance = 6.78 um
17-03-18 04:37:18.054 -07 000000610 INF: FPGA: Xmit ZDACW 36802\n [Z Motor]
17-03-18 04:37:18.054 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:37:18.064 -07 000000610 INF: FPGA: 'ZDACW 36802' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:18.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:18.064 -07 000000591 INF: FPGA: Recv ZDACR 36802
17-03-18 04:37:18.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:18.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35515
17-03-18 04:37:18.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:18.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.234 -07 000000625 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:37:18.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.244 -07 000000447 INF: FPGA: Recv ZSGSRD 35515
17-03-18 04:37:18.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.254 -07 000000625 INF: FPGA: Recv ZSGSRD 35523
17-03-18 04:37:18.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.264 -07 000000579 INF: FPGA: Recv ZSGSRD 35512
17-03-18 04:37:18.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.274 -07 000000447 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:37:18.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.284 -07 000000590 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:37:18.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.294 -07 000000424 INF: FPGA: Recv ZSGSRD 35508
17-03-18 04:37:18.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.304 -07 000000501 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:37:18.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:18.314 -07 000000590 INF: FPGA: Recv ZSGSRD 35514
17-03-18 04:37:18.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:18.324 -07 000000626 INF: FPGA: Recv ZPIEZORD 31199
17-03-18 04:37:18.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:18.334 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.5 V.
17-03-18 04:37:18.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35517 (-167.6 uncal um), Error = 0.8 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35508 (-167.6 uncal um), Max = 35523 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:37:18.334 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35517, posNoise = 6, negNoise = 9
17-03-18 04:37:18.334 -07 000000610 INF: Z Motor: After move to -0.168469, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:18.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:37:18.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:18.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:18.334 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:18.334 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:18.334 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:18.334 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:18.334 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:18.334 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:18.334 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:18.334 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:18.334 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:18.334 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:18.344 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:37:18.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:18.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:18.344 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:18.354 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:37:18.354 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:37:18.354 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:37:18.354 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:37:18.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36979 150\n [Camera]
17-03-18 04:37:18.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:18.974 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:18.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:18.974 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:18.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:18.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:18.984 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:18.984 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:18.984 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-18 04:37:18.984 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:18.984 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:37:19.174 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36979 808
17-03-18 04:37:19.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:19.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:37:19.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:37:19.364 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:19.364 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:19.374 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:37:19.374 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:37:19.374 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:19.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:37:19.374 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:19.374 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:37:19.524 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:19.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:19.524 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:19.524 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:19.524 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:19.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:37:19.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:19.524 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:19.524 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:19.524 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:37:19.714 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:19.714 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:19.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36979 150' command took 2 ms to send, 1355 ms to get response, and 1361 ms overall
17-03-18 04:37:19.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:19.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168492094650059. ------
17-03-18 04:37:19.724 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17481 mm
17-03-18 04:37:19.724 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:19.724 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:19.934 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:37:19.934 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:37:19.934 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:19.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 04:37:19.934 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:37:19.934 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:19.934 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:19.934 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:37:19.934 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:19.944 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:37:19.954 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:37:19.954 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 04:37:19.954 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:19.954 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:19.954 -07 000000608 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:37:19.954 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 233 ms overall
17-03-18 04:37:19.954 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38188, sync = True, waitForSettling = False)
17-03-18 04:37:19.954 -07 000000608 INF: Z Motor: Moving to -0.174813 mm, started at -0.168492 mm, distance = -6.32 um
17-03-18 04:37:19.964 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:19.964 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:19.964 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:19.964 -07 000000591 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:37:19.964 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:19.974 -07 000000608 INF: FPGA: Xmit ZDACW 38188\n [Z Motor]
17-03-18 04:37:19.984 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:20.824 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:37:20.824 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:20.824 -07 000000608 INF: FPGA: 'ZDACW 38188' command took 0 ms to send, 840 ms to get response, and 863 ms overall
17-03-18 04:37:20.824 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:37:20.824 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 830 ms to get response, and 860 ms overall
17-03-18 04:37:20.824 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:20.824 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 850 ms to get response, and 864 ms overall
17-03-18 04:37:20.824 -07 000000480 INF: FPGA: Recv ZDACR 38188
17-03-18 04:37:20.834 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:20.834 -07 000000608 INF: Z Motor: MoveAbsStepped took 872 ms (did NOT wait for settling yet))
17-03-18 04:37:20.874 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:20.884 -07 000000480 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:37:20.884 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:20.884 -07 000000591 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:20.884 -07 000000591 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:37:20.884 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 860 ms, distance = 0.841 mm, average velocity = 0.978 mm/sec
17-03-18 04:37:21.134 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.007176,
17-03-18 04:37:21.684 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:21.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:21.834 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:21.834 -07 000000569 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:37:21.844 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:21.844 -07 000000591 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:21.874 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:21.874 -07 000000591 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:21.874 -07 000000591 INF: Y Motor: Moved to 68.2041 after 1920 ms (table move)
17-03-18 04:37:21.874 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174813 mm (DAC = 38188)
17-03-18 04:37:21.874 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.884 -07 000000502 INF: FPGA: Recv ZSGSRD 36502
17-03-18 04:37:21.884 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:37:21.884 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.884 -07 000000581 INF: FPGA: Recv ZSGSRD 36510
17-03-18 04:37:21.894 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.894 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.894 -07 000000502 INF: FPGA: Recv ZSGSRD 36497
17-03-18 04:37:21.904 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.904 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.904 -07 000000626 INF: FPGA: Recv ZSGSRD 36501
17-03-18 04:37:21.914 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.914 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.914 -07 000000480 INF: FPGA: Recv ZSGSRD 36498
17-03-18 04:37:21.924 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.924 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.924 -07 000000626 INF: FPGA: Recv ZSGSRD 36500
17-03-18 04:37:21.934 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.934 -07 000000480 INF: FPGA: Recv ZSGSRD 36507
17-03-18 04:37:21.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.944 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.944 -07 000000502 INF: FPGA: Recv ZSGSRD 36499
17-03-18 04:37:21.954 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.954 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.954 -07 000000591 INF: FPGA: Recv ZSGSRD 36505
17-03-18 04:37:21.964 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.964 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:21.964 -07 000000569 INF: FPGA: Recv ZSGSRD 36501
17-03-18 04:37:21.974 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.974 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:21.974 -07 000000581 INF: FPGA: Recv ZPIEZORD 32543
17-03-18 04:37:21.984 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:21.984 -07 000000447 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.8 V.
17-03-18 04:37:21.984 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36502 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36501 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36497 (-173.9 uncal um), Max = 36510 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:21.984 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36502, posNoise = 8, negNoise = 5
17-03-18 04:37:21.984 -07 000000447 INF: Z Motor: After move to -0.174813, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:21.984 -07 000000447 INF: Z Motor: Settle wait time = 1920 ms, measure time = 103 ms (allowed 150 ms), total time = 2023 ms
17-03-18 04:37:21.984 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:22.034 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2307 ms
17-03-18 04:37:22.034 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:22.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:22.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:22.034 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:22.034 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:22.034 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:22.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:22.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:22.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:22.044 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:22.044 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:22.044 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:37:22.044 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:37:22.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:22.094 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:22.394 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:22.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:22.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:22.514 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:22.514 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:22.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621519688, 0x0, 559484976) start.
17-03-18 04:37:22.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 452 ms to get response, and 461 ms overall
17-03-18 04:37:22.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621519688, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:37:22.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:22.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:22.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 235 ms.
17-03-18 04:37:22.714 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:22.714 -07 000000447 INF: Autofocus start
17-03-18 04:37:22.714 -07 000000447 INF: MeasureProfile start
17-03-18 04:37:22.714 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:22.724 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:22.724 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:22.724 -07 000000447 INF: MeasureProfile done
17-03-18 04:37:22.724 -07 000000447 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:37:22.724 -07 000000447 INF: Autofocus finished
17-03-18 04:37:22.924 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:22.924 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:22.924 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174819943609693. ----------
17-03-18 04:37:22.934 -07 000000610 INF: Cycle	127	Tile	11	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:22.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36721, sync = True, waitForSettling = True)
17-03-18 04:37:22.934 -07 000000610 INF: Z Motor: Moving to -0.168098 mm, started at -0.174820 mm, distance = 6.72 um
17-03-18 04:37:22.934 -07 000000610 INF: FPGA: Xmit ZDACW 36721\n [Z Motor]
17-03-18 04:37:22.934 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:37:22.944 -07 000000610 INF: FPGA: 'ZDACW 36721' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:22.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:22.944 -07 000000608 INF: FPGA: Recv ZDACR 36721
17-03-18 04:37:22.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:22.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.104 -07 000000480 INF: FPGA: Recv ZSGSRD 35458
17-03-18 04:37:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:23.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35459
17-03-18 04:37:23.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.124 -07 000000591 INF: FPGA: Recv ZSGSRD 35457
17-03-18 04:37:23.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.134 -07 000000608 INF: FPGA: Recv ZSGSRD 35460
17-03-18 04:37:23.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.144 -07 000000581 INF: FPGA: Recv ZSGSRD 35456
17-03-18 04:37:23.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.154 -07 000000447 INF: FPGA: Recv ZSGSRD 35453
17-03-18 04:37:23.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.164 -07 000000502 INF: FPGA: Recv ZSGSRD 35458
17-03-18 04:37:23.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.174 -07 000000447 INF: FPGA: Recv ZSGSRD 35460
17-03-18 04:37:23.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.184 -07 000000480 INF: FPGA: Recv ZSGSRD 35459
17-03-18 04:37:23.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:23.194 -07 000000608 INF: FPGA: Recv ZSGSRD 35455
17-03-18 04:37:23.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:23.204 -07 000000591 INF: FPGA: Recv ZPIEZORD 31158
17-03-18 04:37:23.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:23.214 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.5 V.
17-03-18 04:37:23.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35458 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35458 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35453 (-167.2 uncal um), Max = 35460 (-167.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:23.214 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35458, posNoise = 2, negNoise = 5
17-03-18 04:37:23.214 -07 000000610 INF: Z Motor: After move to -0.168098, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:23.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:37:23.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:23.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:23.214 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:23.214 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:23.214 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:23.214 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:23.214 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:23.214 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:23.214 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:23.214 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:23.214 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:23.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:23.224 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:37:23.224 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:23.224 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:23.224 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:23.234 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:37:23.234 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:37:23.234 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:37:23.234 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:37:23.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36897 150\n [Camera]
17-03-18 04:37:23.434 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:23.864 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:23.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:23.864 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:23.864 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:23.864 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 04:37:23.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:23.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:23.864 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:23.874 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:23.874 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:37:24.054 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36897 808
17-03-18 04:37:24.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:24.264 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:37:24.264 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:37:24.264 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:24.264 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:24.264 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:37:24.274 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:37:24.274 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:37:24.274 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:24.274 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:24.284 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:37:24.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:24.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:24.414 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:24.414 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:24.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:24.414 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:24.524 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:24.524 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:37:24.524 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:24.524 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:37:24.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:24.604 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:24.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36897 150' command took 2 ms to send, 1351 ms to get response, and 1361 ms overall
17-03-18 04:37:24.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:24.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168113066133695. ------
17-03-18 04:37:24.604 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:24.604 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17471 mm
17-03-18 04:37:24.604 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:24.604 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38166, sync = True, waitForSettling = False)
17-03-18 04:37:24.604 -07 000000581 INF: Z Motor: Moving to -0.174713 mm, started at -0.168113 mm, distance = -6.60 um
17-03-18 04:37:24.604 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:37:24.604 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 04:37:24.614 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:24.614 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:24.614 -07 000000581 INF: FPGA: Xmit ZDACW 38166\n [Z Motor]
17-03-18 04:37:24.614 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:37:24.624 -07 000000581 INF: FPGA: 'ZDACW 38166' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:24.624 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:24.624 -07 000000590 INF: FPGA: Recv ZDACR 38166
17-03-18 04:37:24.634 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:24.634 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:24.634 -07 000000581 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 04:37:24.634 -07 000000590 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:37:24.644 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:24.644 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:37:24.644 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:24.644 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:24.644 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:37:24.654 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:24.924 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:37:24.924 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:37:24.924 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:24.924 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:37:24.924 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:37:24.924 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:24.934 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:24.934 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:24.934 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 04:37:24.934 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 04:37:24.944 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:24.944 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 293 ms to get response, and 332 ms overall
17-03-18 04:37:25.024 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:37:25.024 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 04:37:25.074 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:25.074 -07 000000625 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:37:25.084 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:25.084 -07 000000480 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:25.084 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:37:25.084 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.195 mm/sec
17-03-18 04:37:26.034 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:26.034 -07 000000591 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:37:26.044 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:26.044 -07 000000480 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:26.074 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:26.074 -07 000000480 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:26.074 -07 000000480 INF: Y Motor: Moved to 69.0264 after 1461 ms (table move)
17-03-18 04:37:26.074 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174713 mm (DAC = 38166)
17-03-18 04:37:26.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.074 -07 000000625 INF: FPGA: Recv ZSGSRD 36493
17-03-18 04:37:26.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:26.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.084 -07 000000625 INF: FPGA: Recv ZSGSRD 36493
17-03-18 04:37:26.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.094 -07 000000625 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:37:26.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.104 -07 000000480 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:37:26.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.114 -07 000000480 INF: FPGA: Recv ZSGSRD 36481
17-03-18 04:37:26.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.124 -07 000000591 INF: FPGA: Recv ZSGSRD 36483
17-03-18 04:37:26.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:26.134 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.134 -07 000000608 INF: FPGA: Recv ZSGSRD 36481
17-03-18 04:37:26.144 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.144 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.144 -07 000000480 INF: FPGA: Recv ZSGSRD 36483
17-03-18 04:37:26.154 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.154 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.154 -07 000000591 INF: FPGA: Recv ZSGSRD 36487
17-03-18 04:37:26.164 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:26.164 -07 000000625 INF: FPGA: Recv ZSGSRD 36493
17-03-18 04:37:26.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.184 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:26.184 -07 000000591 INF: FPGA: Recv ZPIEZORD 32586
17-03-18 04:37:26.194 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:37:26.194 -07 000000626 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.6 V.
17-03-18 04:37:26.194 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36488 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36489 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36481 (-173.8 uncal um), Max = 36493 (-173.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:37:26.194 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36488, posNoise = 5, negNoise = 7
17-03-18 04:37:26.194 -07 000000626 INF: Z Motor: After move to -0.174713, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:26.194 -07 000000626 INF: Z Motor: Settle wait time = 1464 ms, measure time = 117 ms (allowed 150 ms), total time = 1581 ms
17-03-18 04:37:26.194 -07 000000626 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:26.234 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:37:26.234 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:26.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:26.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:26.234 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:26.234 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:26.234 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:26.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:26.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:26.244 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:26.244 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:26.244 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:26.254 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:37:26.254 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:37:26.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:26.304 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:26.494 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.993549,
17-03-18 04:37:26.604 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:26.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:26.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:26.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 04:37:26.644 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:26.644 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:26.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 04:37:26.684 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:26.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:37:26.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:26.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:26.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:37:26.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:26.744 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:26.744 -07 000000608 INF: Autofocus start
17-03-18 04:37:26.744 -07 000000608 INF: MeasureProfile start
17-03-18 04:37:26.744 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:26.754 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:26.754 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:26.754 -07 000000608 INF: MeasureProfile done
17-03-18 04:37:26.754 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:37:26.754 -07 000000608 INF: Autofocus finished
17-03-18 04:37:26.954 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:26.954 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:26.964 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174730004639709. ----------
17-03-18 04:37:26.964 -07 000000610 INF: Cycle	127	Tile	12	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:26.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36663, sync = True, waitForSettling = True)
17-03-18 04:37:26.964 -07 000000610 INF: Z Motor: Moving to -0.167832 mm, started at -0.174730 mm, distance = 6.90 um
17-03-18 04:37:26.964 -07 000000610 INF: FPGA: Xmit ZDACW 36663\n [Z Motor]
17-03-18 04:37:26.964 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:37:26.974 -07 000000610 INF: FPGA: 'ZDACW 36663' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:26.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:26.974 -07 000000626 INF: FPGA: Recv ZDACR 36663
17-03-18 04:37:26.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:26.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.134 -07 000000480 INF: FPGA: Recv ZSGSRD 35416
17-03-18 04:37:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.144 -07 000000591 INF: FPGA: Recv ZSGSRD 35418
17-03-18 04:37:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.154 -07 000000480 INF: FPGA: Recv ZSGSRD 35414
17-03-18 04:37:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.164 -07 000000626 INF: FPGA: Recv ZSGSRD 35410
17-03-18 04:37:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.174 -07 000000625 INF: FPGA: Recv ZSGSRD 35412
17-03-18 04:37:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35415
17-03-18 04:37:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.194 -07 000000625 INF: FPGA: Recv ZSGSRD 35416
17-03-18 04:37:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.204 -07 000000480 INF: FPGA: Recv ZSGSRD 35414
17-03-18 04:37:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35414
17-03-18 04:37:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:27.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35423
17-03-18 04:37:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:27.234 -07 000000625 INF: FPGA: Recv ZPIEZORD 31092
17-03-18 04:37:27.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:27.244 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.5 V.
17-03-18 04:37:27.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35415 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35414 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35410 (-166.9 uncal um), Max = 35423 (-167.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:27.244 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35415, posNoise = 8, negNoise = 5
17-03-18 04:37:27.244 -07 000000610 INF: Z Motor: After move to -0.167832, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:27.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:37:27.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:27.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:27.244 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:27.244 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:27.244 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:27.244 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:27.244 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:27.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:27.244 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:27.244 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:27.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:27.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:27.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:27.254 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:27.254 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:27.254 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:27.264 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:37:27.264 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:37:27.264 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:37:27.264 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:37:27.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36840 150\n [Camera]
17-03-18 04:37:27.474 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:27.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:27.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:27.894 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:27.894 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:27.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:27.894 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:27.894 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:27.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:37:27.904 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:27.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:37:28.084 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36840 808
17-03-18 04:37:28.234 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:28.294 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:37:28.294 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:37:28.294 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:28.294 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:37:28.294 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:37:28.294 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:28.294 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:28.294 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:37:28.304 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:28.304 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:37:28.434 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:28.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:28.444 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:28.444 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:28.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:28.444 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:28.444 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:28.444 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:37:28.444 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:28.444 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:37:28.634 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:37:28.634 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:28.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36840 150' command took 2 ms to send, 1351 ms to get response, and 1363 ms overall
17-03-18 04:37:28.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:28.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167836825011599. ------
17-03-18 04:37:28.634 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:28.634 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17428 mm
17-03-18 04:37:28.634 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:28.644 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:28.644 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:28.644 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:28.644 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38072, sync = True, waitForSettling = False)
17-03-18 04:37:28.644 -07 000000480 INF: Z Motor: Moving to -0.174282 mm, started at -0.167837 mm, distance = -6.45 um
17-03-18 04:37:28.644 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:37:28.644 -07 000000625 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:37:28.654 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:28.654 -07 000000579 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:37:28.664 -07 000000480 INF: FPGA: Xmit ZDACW 38072\n [Z Motor]
17-03-18 04:37:28.664 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:37:28.664 -07 000000625 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:28.664 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:37:28.664 -07 000000625 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:28.664 -07 000000625 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:37:28.674 -07 000000480 INF: FPGA: 'ZDACW 38072' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:37:28.674 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:28.674 -07 000000591 INF: FPGA: Recv ZDACR 38072
17-03-18 04:37:28.684 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:28.684 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:28.684 -07 000000480 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:37:28.844 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:37:28.844 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:37:28.844 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:28.844 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:28.844 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:37:28.844 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:37:28.844 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:37:28.844 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:28.844 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:28.844 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:37:28.854 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:28.854 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:37:29.054 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:37:29.064 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 04:37:29.104 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:29.114 -07 000000424 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:37:29.114 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:37:29.114 -07 000000625 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:29.114 -07 000000625 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:37:29.114 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 04:37:30.064 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:30.064 -07 000000474 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:37:30.074 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:30.074 -07 000000625 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:30.104 -07 000000625 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:30.104 -07 000000625 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:30.104 -07 000000625 INF: Y Motor: Moved to 69.8628 after 1458 ms (table move)
17-03-18 04:37:30.104 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174282 mm (DAC = 38072)
17-03-18 04:37:30.104 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.104 -07 000000625 INF: FPGA: Recv ZSGSRD 36415
17-03-18 04:37:30.114 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:30.114 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.114 -07 000000424 INF: FPGA: Recv ZSGSRD 36420
17-03-18 04:37:30.124 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.124 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.124 -07 000000625 INF: FPGA: Recv ZSGSRD 36426
17-03-18 04:37:30.134 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.134 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.134 -07 000000424 INF: FPGA: Recv ZSGSRD 36421
17-03-18 04:37:30.144 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.144 -07 000000625 INF: FPGA: Recv ZSGSRD 36415
17-03-18 04:37:30.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.154 -07 000000424 INF: FPGA: Recv ZSGSRD 36423
17-03-18 04:37:30.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.164 -07 000000579 INF: FPGA: Recv ZSGSRD 36415
17-03-18 04:37:30.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.174 -07 000000579 INF: FPGA: Recv ZSGSRD 36410
17-03-18 04:37:30.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.184 -07 000000625 INF: FPGA: Recv ZSGSRD 36417
17-03-18 04:37:30.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:30.194 -07 000000625 INF: FPGA: Recv ZSGSRD 36422
17-03-18 04:37:30.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.204 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:30.204 -07 000000424 INF: FPGA: Recv ZPIEZORD 32471
17-03-18 04:37:30.214 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:30.214 -07 000000590 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.7 V.
17-03-18 04:37:30.214 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36418 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36418 (-173.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36410 (-173.3 uncal um), Max = 36426 (-173.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:37:30.214 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36418, posNoise = 8, negNoise = 8
17-03-18 04:37:30.214 -07 000000590 INF: Z Motor: After move to -0.174282, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:30.214 -07 000000590 INF: Z Motor: Settle wait time = 1463 ms, measure time = 105 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:37:30.214 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:30.264 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:37:30.264 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:30.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:30.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:30.264 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:30.264 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:30.264 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:30.264 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:30.264 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:30.264 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:30.274 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:30.274 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:30.284 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 04:37:30.284 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:37:30.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:30.334 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:30.634 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:30.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:30.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:30.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 04:37:30.674 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:30.674 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:30.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:37:30.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:37:30.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:30.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:37:30.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:37:30.774 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:30.774 -07 000000625 INF: Autofocus start
17-03-18 04:37:30.774 -07 000000625 INF: MeasureProfile start
17-03-18 04:37:30.774 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:30.784 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:30.784 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:30.794 -07 000000625 INF: MeasureProfile done
17-03-18 04:37:30.794 -07 000000625 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:37:30.794 -07 000000625 INF: Autofocus finished
17-03-18 04:37:30.984 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:30.984 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:30.984 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174280309789785. ----------
17-03-18 04:37:30.994 -07 000000610 INF: Cycle	127	Tile	13	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:30.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36569, sync = True, waitForSettling = True)
17-03-18 04:37:30.994 -07 000000610 INF: Z Motor: Moving to -0.167402 mm, started at -0.174280 mm, distance = 6.88 um
17-03-18 04:37:30.994 -07 000000610 INF: FPGA: Xmit ZDACW 36569\n [Z Motor]
17-03-18 04:37:30.994 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:37:31.004 -07 000000610 INF: FPGA: 'ZDACW 36569' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:31.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:31.004 -07 000000424 INF: FPGA: Recv ZDACR 36569
17-03-18 04:37:31.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:31.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.164 -07 000000590 INF: FPGA: Recv ZSGSRD 35349
17-03-18 04:37:31.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:31.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.174 -07 000000579 INF: FPGA: Recv ZSGSRD 35346
17-03-18 04:37:31.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.184 -07 000000424 INF: FPGA: Recv ZSGSRD 35353
17-03-18 04:37:31.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.194 -07 000000579 INF: FPGA: Recv ZSGSRD 35343
17-03-18 04:37:31.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.204 -07 000000579 INF: FPGA: Recv ZSGSRD 35343
17-03-18 04:37:31.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.214 -07 000000625 INF: FPGA: Recv ZSGSRD 35350
17-03-18 04:37:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.224 -07 000000579 INF: FPGA: Recv ZSGSRD 35343
17-03-18 04:37:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.234 -07 000000424 INF: FPGA: Recv ZSGSRD 35350
17-03-18 04:37:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.244 -07 000000590 INF: FPGA: Recv ZSGSRD 35342
17-03-18 04:37:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:31.254 -07 000000590 INF: FPGA: Recv ZSGSRD 35349
17-03-18 04:37:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:31.264 -07 000000424 INF: FPGA: Recv ZPIEZORD 31035
17-03-18 04:37:31.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:31.274 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.5 V.
17-03-18 04:37:31.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35347 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35348 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35342 (-166.5 uncal um), Max = 35353 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:31.274 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35347, posNoise = 6, negNoise = 5
17-03-18 04:37:31.274 -07 000000610 INF: Z Motor: After move to -0.167402, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:31.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:37:31.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:31.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:31.274 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:31.274 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:31.274 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:31.274 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:31.274 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:31.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:31.274 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:31.274 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:31.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:31.274 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:31.284 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:37:31.284 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:31.284 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:31.284 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:31.294 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:37:31.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:31.294 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:37:31.294 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:37:31.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36746 150\n [Camera]
17-03-18 04:37:31.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:31.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:31.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:31.864 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.989471,
17-03-18 04:37:31.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:31.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:31.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:31.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:31.914 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:31.924 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:31.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:37:31.924 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:31.924 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:31.924 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:37:32.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36746 808
17-03-18 04:37:32.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:32.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:37:32.294 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:37:32.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:32.294 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:32.294 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:37:32.294 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:37:32.294 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:32.304 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:32.304 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:37:32.304 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:37:32.464 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:32.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:32.464 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:32.464 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:32.464 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:37:32.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:32.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:32.464 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:32.464 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:32.464 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:37:32.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:32.654 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:32.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36746 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:37:32.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:32.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.16739997858596. ------
17-03-18 04:37:32.664 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17372 mm
17-03-18 04:37:32.664 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:32.664 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:32.664 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:37:32.664 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:37:32.664 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37949, sync = True, waitForSettling = False)
17-03-18 04:37:32.664 -07 000000579 INF: Z Motor: Moving to -0.173719 mm, started at -0.167400 mm, distance = -6.32 um
17-03-18 04:37:32.664 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:32.674 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:32.674 -07 000000579 INF: FPGA: Xmit ZDACW 37949\n [Z Motor]
17-03-18 04:37:32.674 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:37:32.684 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:32.684 -07 000000579 INF: FPGA: 'ZDACW 37949' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:37:32.684 -07 000000569 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:37:32.694 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:32.694 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:37:32.694 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:32.694 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:32.694 -07 000000382 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:37:32.704 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:32.704 -07 000000591 INF: FPGA: Recv ZDACR 37949
17-03-18 04:37:32.714 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:32.714 -07 000000579 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:37:32.714 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:32.854 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:37:32.854 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:37:32.854 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:32.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:37:32.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:37:32.854 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:32.864 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:32.864 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:37:32.864 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:37:32.864 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:37:32.894 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:32.894 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:37:33.084 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:37:33.084 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:37:33.134 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:33.144 -07 000000590 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:37:33.144 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:37:33.144 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:33.144 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:37:33.144 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:37:34.094 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:34.094 -07 000000581 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:37:34.104 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:34.104 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:34.134 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:34.134 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:34.134 -07 000000382 INF: Y Motor: Moved to 70.6880 after 1467 ms (table move)
17-03-18 04:37:34.134 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173719 mm (DAC = 37949)
17-03-18 04:37:34.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.134 -07 000000581 INF: FPGA: Recv ZSGSRD 36336
17-03-18 04:37:34.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:34.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.144 -07 000000581 INF: FPGA: Recv ZSGSRD 36337
17-03-18 04:37:34.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.154 -07 000000581 INF: FPGA: Recv ZSGSRD 36335
17-03-18 04:37:34.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.164 -07 000000581 INF: FPGA: Recv ZSGSRD 36332
17-03-18 04:37:34.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.174 -07 000000581 INF: FPGA: Recv ZSGSRD 36334
17-03-18 04:37:34.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.184 -07 000000626 INF: FPGA: Recv ZSGSRD 36324
17-03-18 04:37:34.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.194 -07 000000626 INF: FPGA: Recv ZSGSRD 36327
17-03-18 04:37:34.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.204 -07 000000581 INF: FPGA: Recv ZSGSRD 36330
17-03-18 04:37:34.214 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.214 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.214 -07 000000626 INF: FPGA: Recv ZSGSRD 36331
17-03-18 04:37:34.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.224 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:34.224 -07 000000581 INF: FPGA: Recv ZSGSRD 36338
17-03-18 04:37:34.234 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.234 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:34.234 -07 000000382 INF: FPGA: Recv ZPIEZORD 32354
17-03-18 04:37:34.244 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:34.244 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.8 V.
17-03-18 04:37:34.244 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36332 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36333 (-172.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36324 (-172.8 uncal um), Max = 36338 (-172.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:37:34.244 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36332, posNoise = 6, negNoise = 8
17-03-18 04:37:34.244 -07 000000424 INF: Z Motor: After move to -0.173719, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:34.244 -07 000000424 INF: Z Motor: Settle wait time = 1470 ms, measure time = 104 ms (allowed 150 ms), total time = 1574 ms
17-03-18 04:37:34.244 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:34.294 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:37:34.294 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:34.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:34.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:34.294 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:34.294 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:34.294 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:34.294 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:34.294 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:34.294 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:34.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:34.304 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:34.304 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:37:34.304 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:37:34.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:34.354 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:34.654 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:34.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:34.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:34.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 04:37:34.694 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:34.694 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:34.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:37:34.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:37:34.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:34.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:37:34.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:37:34.794 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:34.794 -07 000000626 INF: Autofocus start
17-03-18 04:37:34.794 -07 000000626 INF: MeasureProfile start
17-03-18 04:37:34.794 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:34.804 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:34.804 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:34.814 -07 000000626 INF: MeasureProfile done
17-03-18 04:37:34.814 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:37:34.814 -07 000000626 INF: Autofocus finished
17-03-18 04:37:35.004 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:35.004 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:35.004 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173727827545594. ----------
17-03-18 04:37:35.004 -07 000000610 INF: Cycle	127	Tile	14	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:35.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36499, sync = True, waitForSettling = True)
17-03-18 04:37:35.014 -07 000000610 INF: Z Motor: Moving to -0.167082 mm, started at -0.173728 mm, distance = 6.65 um
17-03-18 04:37:35.014 -07 000000610 INF: FPGA: Xmit ZDACW 36499\n [Z Motor]
17-03-18 04:37:35.014 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:37:35.024 -07 000000610 INF: FPGA: 'ZDACW 36499' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:35.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:35.024 -07 000000382 INF: FPGA: Recv ZDACR 36499
17-03-18 04:37:35.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:35.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.184 -07 000000382 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:37:35.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:35.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.194 -07 000000608 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:37:35.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.204 -07 000000382 INF: FPGA: Recv ZSGSRD 35295
17-03-18 04:37:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.214 -07 000000608 INF: FPGA: Recv ZSGSRD 35300
17-03-18 04:37:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.224 -07 000000581 INF: FPGA: Recv ZSGSRD 35298
17-03-18 04:37:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:37:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.244 -07 000000581 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:37:35.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.254 -07 000000626 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:37:35.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.264 -07 000000581 INF: FPGA: Recv ZSGSRD 35300
17-03-18 04:37:35.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:35.274 -07 000000626 INF: FPGA: Recv ZSGSRD 35296
17-03-18 04:37:35.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:35.284 -07 000000626 INF: FPGA: Recv ZPIEZORD 30943
17-03-18 04:37:35.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:35.294 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.6 V.
17-03-18 04:37:35.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35299 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35295 (-166.2 uncal um), Max = 35302 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:37:35.294 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35299, posNoise = 3, negNoise = 4
17-03-18 04:37:35.294 -07 000000610 INF: Z Motor: After move to -0.167082, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:35.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:37:35.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:35.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:35.294 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:35.294 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:35.294 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:35.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:35.294 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:35.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:35.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:35.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:35.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:35.294 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:35.304 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:35.304 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:35.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:35.304 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:35.314 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:37:35.314 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:37:35.314 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:37:35.314 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:37:35.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36676 150\n [Camera]
17-03-18 04:37:35.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:35.944 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:35.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:35.944 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:35.944 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:35.944 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:37:35.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:35.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:35.944 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:35.944 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:35.944 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:37:36.134 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36676 808
17-03-18 04:37:36.284 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:36.334 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:37:36.334 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:37:36.334 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:36.334 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:37:36.334 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:37:36.334 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:36.344 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:36.344 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:37:36.344 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:36.354 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:37:36.484 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:36.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:36.494 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:36.494 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:36.494 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:37:36.494 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:36.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:36.494 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:36.494 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:36.494 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:37:36.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:36.684 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:36.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36676 150' command took 2 ms to send, 1351 ms to get response, and 1361 ms overall
17-03-18 04:37:36.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:36.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167091616403155. ------
17-03-18 04:37:36.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:36.684 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:36.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:36.684 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17377 mm
17-03-18 04:37:36.684 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:36.694 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:36.694 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:37:36.694 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:36.694 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:37:36.694 -07 000000474 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:37:36.694 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37961, sync = True, waitForSettling = False)
17-03-18 04:37:36.694 -07 000000480 INF: Z Motor: Moving to -0.173774 mm, started at -0.167092 mm, distance = -6.68 um
17-03-18 04:37:36.704 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:36.704 -07 000000569 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:37:36.714 -07 000000480 INF: FPGA: Xmit ZDACW 37961\n [Z Motor]
17-03-18 04:37:36.714 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:37:36.714 -07 000000474 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:36.714 -07 000000474 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:36.714 -07 000000474 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:37:36.714 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:37:36.724 -07 000000480 INF: FPGA: 'ZDACW 37961' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:37:36.724 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:36.724 -07 000000590 INF: FPGA: Recv ZDACR 37961
17-03-18 04:37:36.734 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:36.734 -07 000000480 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:37:36.734 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:36.874 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:37:36.874 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:37:36.874 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:36.884 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:37:36.884 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:37:36.884 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:36.884 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:36.884 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:37:36.884 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:37:36.884 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:37:36.894 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:36.894 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:37:37.104 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:37:37.104 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:37:37.154 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:37.164 -07 000000447 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:37:37.164 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:37.164 -07 000000474 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:37.164 -07 000000474 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:37:37.164 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:37:37.234 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.020806,
17-03-18 04:37:38.114 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:38.324 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:37:38.324 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 200 ms to get response, and 210 ms overall
17-03-18 04:37:38.324 -07 000000474 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:38.354 -07 000000474 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:38.354 -07 000000474 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:38.354 -07 000000474 INF: Y Motor: Moved to 71.5181 after 1661 ms (table move)
17-03-18 04:37:38.354 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173774 mm (DAC = 37961)
17-03-18 04:37:38.364 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.364 -07 000000502 INF: FPGA: Recv ZSGSRD 36346
17-03-18 04:37:38.374 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:37:38.374 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.374 -07 000000502 INF: FPGA: Recv ZSGSRD 36338
17-03-18 04:37:38.384 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.384 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.384 -07 000000502 INF: FPGA: Recv ZSGSRD 36337
17-03-18 04:37:38.394 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.394 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.394 -07 000000502 INF: FPGA: Recv ZSGSRD 36344
17-03-18 04:37:38.404 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.404 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.404 -07 000000474 INF: FPGA: Recv ZSGSRD 36340
17-03-18 04:37:38.414 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.414 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.414 -07 000000474 INF: FPGA: Recv ZSGSRD 36343
17-03-18 04:37:38.424 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.424 -07 000000502 INF: FPGA: Recv ZSGSRD 36345
17-03-18 04:37:38.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.434 -07 000000502 INF: FPGA: Recv ZSGSRD 36342
17-03-18 04:37:38.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.444 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.444 -07 000000502 INF: FPGA: Recv ZSGSRD 36339
17-03-18 04:37:38.454 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.454 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:38.454 -07 000000474 INF: FPGA: Recv ZSGSRD 36338
17-03-18 04:37:38.464 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.464 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:38.464 -07 000000502 INF: FPGA: Recv ZPIEZORD 32340
17-03-18 04:37:38.474 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:38.474 -07 000000581 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.8 V.
17-03-18 04:37:38.474 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36341 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36341 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36337 (-172.9 uncal um), Max = 36346 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:37:38.474 -07 000000581 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36341, posNoise = 5, negNoise = 4
17-03-18 04:37:38.474 -07 000000581 INF: Z Motor: After move to -0.173774, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:38.474 -07 000000581 INF: Z Motor: Settle wait time = 1664 ms, measure time = 113 ms (allowed 150 ms), total time = 1777 ms
17-03-18 04:37:38.474 -07 000000581 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:38.514 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1821 ms
17-03-18 04:37:38.514 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:38.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:38.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:38.514 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:38.514 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:38.514 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:38.514 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:38.514 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:38.514 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:38.524 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:37:38.524 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:38.534 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:37:38.534 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:37:38.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:38.584 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:38.884 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:38.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:38.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:38.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 04:37:38.924 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:38.924 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:38.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 374 ms to get response, and 386 ms overall
17-03-18 04:37:39.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:37:39.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:39.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:37:39.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:37:39.024 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:39.024 -07 000000502 INF: Autofocus start
17-03-18 04:37:39.024 -07 000000502 INF: MeasureProfile start
17-03-18 04:37:39.024 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:39.034 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:39.034 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:39.034 -07 000000502 INF: MeasureProfile done
17-03-18 04:37:39.034 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:37:39.034 -07 000000502 INF: Autofocus finished
17-03-18 04:37:39.234 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:39.234 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:39.234 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.17378564545487. ----------
17-03-18 04:37:39.234 -07 000000610 INF: Cycle	127	Tile	15	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:39.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36476, sync = True, waitForSettling = True)
17-03-18 04:37:39.244 -07 000000610 INF: Z Motor: Moving to -0.166976 mm, started at -0.173786 mm, distance = 6.81 um
17-03-18 04:37:39.244 -07 000000610 INF: FPGA: Xmit ZDACW 36476\n [Z Motor]
17-03-18 04:37:39.244 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:37:39.254 -07 000000610 INF: FPGA: 'ZDACW 36476' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:39.254 -07 000000626 INF: FPGA: Recv ZDACR 36476
17-03-18 04:37:39.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.414 -07 000000424 INF: FPGA: Recv ZSGSRD 35283
17-03-18 04:37:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.424 -07 000000502 INF: FPGA: Recv ZSGSRD 35288
17-03-18 04:37:39.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35283
17-03-18 04:37:39.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.444 -07 000000625 INF: FPGA: Recv ZSGSRD 35285
17-03-18 04:37:39.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.454 -07 000000474 INF: FPGA: Recv ZSGSRD 35289
17-03-18 04:37:39.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.464 -07 000000502 INF: FPGA: Recv ZSGSRD 35282
17-03-18 04:37:39.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:39.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.474 -07 000000626 INF: FPGA: Recv ZSGSRD 35283
17-03-18 04:37:39.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.484 -07 000000474 INF: FPGA: Recv ZSGSRD 35277
17-03-18 04:37:39.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.494 -07 000000590 INF: FPGA: Recv ZSGSRD 35286
17-03-18 04:37:39.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:39.504 -07 000000424 INF: FPGA: Recv ZSGSRD 35285
17-03-18 04:37:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:39.514 -07 000000625 INF: FPGA: Recv ZPIEZORD 30947
17-03-18 04:37:39.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:39.524 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.5 V.
17-03-18 04:37:39.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35284 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35284 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35277 (-166.1 uncal um), Max = 35289 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:37:39.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35284, posNoise = 5, negNoise = 7
17-03-18 04:37:39.524 -07 000000610 INF: Z Motor: After move to -0.166976, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:39.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:37:39.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:39.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:39.524 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:39.524 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:39.524 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:39.524 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:39.524 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:39.524 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:39.524 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:39.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:39.524 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:39.524 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:39.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:39.524 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:39.534 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:37:39.534 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:39.534 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:37:39.534 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:39.534 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:37:39.534 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:39.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36652 150\n [Camera]
17-03-18 04:37:39.744 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:40.164 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:40.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:40.164 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:40.164 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:40.164 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 04:37:40.174 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:40.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:40.174 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:40.174 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:40.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:37:40.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36652 808
17-03-18 04:37:40.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:40.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:37:40.544 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:37:40.544 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:40.544 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:37:40.544 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:37:40.544 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:40.544 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:40.544 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:37:40.554 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:40.554 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:37:40.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:40.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:40.714 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:40.714 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:40.714 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:37:40.714 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:40.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:40.714 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:40.714 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:40.714 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:37:40.904 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:40.904 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:40.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36652 150' command took 2 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-18 04:37:40.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:40.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.166995253221029. ------
17-03-18 04:37:40.914 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:40.914 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17351 mm
17-03-18 04:37:40.914 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:40.914 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:37:40.914 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 04:37:40.914 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:40.914 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37902, sync = True, waitForSettling = False)
17-03-18 04:37:40.914 -07 000000579 INF: Z Motor: Moving to -0.173504 mm, started at -0.166995 mm, distance = -6.51 um
17-03-18 04:37:40.924 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:40.924 -07 000000579 INF: FPGA: Xmit ZDACW 37902\n [Z Motor]
17-03-18 04:37:40.924 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:37:40.934 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:40.934 -07 000000579 INF: FPGA: 'ZDACW 37902' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:37:40.934 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:37:40.944 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:37:40.944 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:40.944 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:40.944 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:40.944 -07 000000626 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:37:40.954 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:40.954 -07 000000424 INF: FPGA: Recv ZDACR 37902
17-03-18 04:37:40.964 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:40.964 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:40.964 -07 000000579 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:37:41.104 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:37:41.104 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:37:41.104 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:41.104 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:37:41.104 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:37:41.104 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:41.114 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:41.114 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:37:41.114 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:37:41.114 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:37:41.144 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:41.144 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:37:41.334 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:37:41.334 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:37:41.384 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:41.394 -07 000000581 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:37:41.394 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:37:41.394 -07 000000626 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:41.394 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:37:41.394 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 04:37:41.684 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:41.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:42.344 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:43.324 -07 000000480 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:37:43.324 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 970 ms to get response, and 980 ms overall
17-03-18 04:37:43.324 -07 000000626 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:43.324 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.018051,
17-03-18 04:37:43.354 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:43.354 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:43.354 -07 000000626 INF: Y Motor: Moved to 72.3491 after 2440 ms (table move)
17-03-18 04:37:43.364 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173504 mm (DAC = 37902)
17-03-18 04:37:43.374 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.374 -07 000000480 INF: FPGA: Recv ZSGSRD 36300
17-03-18 04:37:43.384 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:37:43.384 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.384 -07 000000625 INF: FPGA: Recv ZSGSRD 36296
17-03-18 04:37:43.394 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.394 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.394 -07 000000625 INF: FPGA: Recv ZSGSRD 36298
17-03-18 04:37:43.404 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.404 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.404 -07 000000625 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:37:43.414 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.414 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36290
17-03-18 04:37:43.424 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.424 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.424 -07 000000501 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:37:43.434 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.434 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.434 -07 000000569 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:37:43.444 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.444 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.444 -07 000000569 INF: FPGA: Recv ZSGSRD 36301
17-03-18 04:37:43.454 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.454 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.454 -07 000000625 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:37:43.464 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.464 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:43.464 -07 000000625 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:37:43.474 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.474 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:43.474 -07 000000626 INF: FPGA: Recv ZPIEZORD 32317
17-03-18 04:37:43.484 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:43.484 -07 000000502 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.8 V.
17-03-18 04:37:43.484 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36299 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36299 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36290 (-172.6 uncal um), Max = 36302 (-172.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:37:43.484 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36299, posNoise = 3, negNoise = 9
17-03-18 04:37:43.484 -07 000000502 INF: Z Motor: After move to -0.173504, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:43.484 -07 000000502 INF: Z Motor: Settle wait time = 2445 ms, measure time = 119 ms (allowed 150 ms), total time = 2564 ms
17-03-18 04:37:43.484 -07 000000502 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:43.524 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2607 ms
17-03-18 04:37:43.524 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:43.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:43.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:43.524 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:43.524 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:43.524 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:43.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:43.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:43.524 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:43.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:43.534 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:43.534 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:37:43.534 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:37:43.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:43.584 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:43.884 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:43.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:43.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:43.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 04:37:43.924 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:43.924 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:43.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:37:44.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 04:37:44.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:44.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:37:44.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:37:44.024 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:44.024 -07 000000625 INF: Autofocus start
17-03-18 04:37:44.024 -07 000000625 INF: MeasureProfile start
17-03-18 04:37:44.034 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:44.034 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:37:44.034 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:44.034 -07 000000625 INF: MeasureProfile done
17-03-18 04:37:44.044 -07 000000625 INF: X=-32  Z correction [um]=-0.2344
17-03-18 04:37:44.044 -07 000000625 INF: Autofocus finished
17-03-18 04:37:44.234 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:44.234 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:44.234 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173515828544916. ----------
17-03-18 04:37:44.244 -07 000000610 INF: Cycle	127	Tile	16	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:44.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-18 04:37:44.244 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173516 mm, distance = 7.05 um
17-03-18 04:37:44.244 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-18 04:37:44.244 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:37:44.254 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:37:44.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:44.254 -07 000000579 INF: FPGA: Recv ZDACR 36364
17-03-18 04:37:44.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:44.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35204
17-03-18 04:37:44.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:44.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.424 -07 000000474 INF: FPGA: Recv ZSGSRD 35208
17-03-18 04:37:44.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.434 -07 000000474 INF: FPGA: Recv ZSGSRD 35207
17-03-18 04:37:44.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.444 -07 000000447 INF: FPGA: Recv ZSGSRD 35194
17-03-18 04:37:44.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.454 -07 000000447 INF: FPGA: Recv ZSGSRD 35205
17-03-18 04:37:44.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.464 -07 000000474 INF: FPGA: Recv ZSGSRD 35201
17-03-18 04:37:44.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.474 -07 000000474 INF: FPGA: Recv ZSGSRD 35204
17-03-18 04:37:44.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35203
17-03-18 04:37:44.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.494 -07 000000625 INF: FPGA: Recv ZSGSRD 35201
17-03-18 04:37:44.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:44.504 -07 000000625 INF: FPGA: Recv ZSGSRD 35208
17-03-18 04:37:44.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:44.514 -07 000000625 INF: FPGA: Recv ZPIEZORD 30837
17-03-18 04:37:44.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:44.524 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.6 V.
17-03-18 04:37:44.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35204 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35194 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:37:44.524 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 4, negNoise = 10
17-03-18 04:37:44.524 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:44.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:37:44.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:44.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:44.524 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:44.524 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:44.524 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:44.524 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:44.524 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:44.524 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:44.524 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:44.524 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:44.524 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:44.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:44.534 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:37:44.534 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:44.534 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:44.534 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:44.544 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:37:44.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:37:44.544 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:37:44.544 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:37:44.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36540 150\n [Camera]
17-03-18 04:37:44.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:45.174 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:37:45.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:37:45.174 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:45.174 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:45.174 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:37:45.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:37:45.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:37:45.184 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:45.184 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:45.184 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:37:45.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36540 808
17-03-18 04:37:45.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:45.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:37:45.574 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:37:45.574 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:45.584 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:45.584 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:37:45.584 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:37:45.584 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:37:45.584 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:45.584 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:45.594 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:37:45.714 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:45.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:45.724 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:45.844 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:45.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:45.854 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:45.854 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:45.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:37:45.854 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:45.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:37:45.914 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:37:45.914 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:45.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36540 150' command took 2 ms to send, 1351 ms to get response, and 1361 ms overall
17-03-18 04:37:45.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:45.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166481316249688. ------
17-03-18 04:37:45.914 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:45.914 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17292 mm
17-03-18 04:37:45.914 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:45.924 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:37:45.924 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:37:45.924 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:45.924 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37774, sync = True, waitForSettling = False)
17-03-18 04:37:45.924 -07 000000625 INF: Z Motor: Moving to -0.172918 mm, started at -0.166481 mm, distance = -6.44 um
17-03-18 04:37:45.924 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:45.924 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:37:45.924 -07 000000474 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:37:45.934 -07 000000625 INF: FPGA: Xmit ZDACW 37774\n [Z Motor]
17-03-18 04:37:45.934 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:45.934 -07 000000501 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:45.934 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:45.934 -07 000000501 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:37:45.934 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:37:45.944 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:45.944 -07 000000625 INF: FPGA: 'ZDACW 37774' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:37:45.954 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:45.964 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:45.964 -07 000000447 INF: FPGA: Recv ZDACR 37774
17-03-18 04:37:45.974 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:45.974 -07 000000625 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:37:46.144 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:46.144 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:37:46.254 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:37:46.254 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:37:46.254 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:46.254 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:37:46.254 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:37:46.254 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:46.254 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:46.254 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:46.254 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-18 04:37:46.264 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:37:46.324 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:37:46.334 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 04:37:46.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:46.384 -07 000000591 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:37:46.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:46.394 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:46.394 -07 000000501 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:37:46.394 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.109 mm/sec
17-03-18 04:37:46.684 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:47.344 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:47.344 -07 000000608 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:37:47.354 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:47.354 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:47.384 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:47.384 -07 000000501 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:37:47.384 -07 000000501 INF: Y Motor: Moved to 73.1758 after 1460 ms (table move)
17-03-18 04:37:47.384 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172918 mm (DAC = 37774)
17-03-18 04:37:47.384 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.384 -07 000000480 INF: FPGA: Recv ZSGSRD 36211
17-03-18 04:37:47.394 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:47.394 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.394 -07 000000382 INF: FPGA: Recv ZSGSRD 36205
17-03-18 04:37:47.404 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.404 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.404 -07 000000581 INF: FPGA: Recv ZSGSRD 36213
17-03-18 04:37:47.414 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:47.414 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.414 -07 000000474 INF: FPGA: Recv ZSGSRD 36210
17-03-18 04:37:47.424 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.424 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.424 -07 000000608 INF: FPGA: Recv ZSGSRD 36207
17-03-18 04:37:47.434 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.434 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.434 -07 000000382 INF: FPGA: Recv ZSGSRD 36208
17-03-18 04:37:47.444 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.444 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.444 -07 000000424 INF: FPGA: Recv ZSGSRD 36201
17-03-18 04:37:47.454 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.454 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.454 -07 000000626 INF: FPGA: Recv ZSGSRD 36206
17-03-18 04:37:47.464 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.464 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.464 -07 000000608 INF: FPGA: Recv ZSGSRD 36207
17-03-18 04:37:47.474 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.474 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:47.474 -07 000000382 INF: FPGA: Recv ZSGSRD 36207
17-03-18 04:37:47.484 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.484 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:47.484 -07 000000424 INF: FPGA: Recv ZPIEZORD 32229
17-03-18 04:37:47.494 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:47.494 -07 000000569 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.764 V. Piezo Error = -8.8 V.
17-03-18 04:37:47.494 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36208 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36207 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36201 (-172.0 uncal um), Max = 36213 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:37:47.494 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36208, posNoise = 5, negNoise = 7
17-03-18 04:37:47.494 -07 000000569 INF: Z Motor: After move to -0.172918, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:47.494 -07 000000569 INF: Z Motor: Settle wait time = 1463 ms, measure time = 106 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:37:47.494 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:47.544 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:37:47.544 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:47.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:47.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:47.544 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:47.544 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:47.544 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:47.544 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:47.544 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:37:47.544 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:47.554 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:47.554 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:47.554 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:37:47.554 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:37:47.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:47.604 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:47.904 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:47.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:47.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:47.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 04:37:47.944 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:47.944 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:47.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:37:48.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:37:48.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:48.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:48.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:37:48.044 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:48.044 -07 000000581 INF: Autofocus start
17-03-18 04:37:48.044 -07 000000581 INF: MeasureProfile start
17-03-18 04:37:48.044 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:48.054 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:37:48.054 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:48.054 -07 000000581 INF: MeasureProfile done
17-03-18 04:37:48.054 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:37:48.054 -07 000000581 INF: Autofocus finished
17-03-18 04:37:48.254 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:48.254 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:48.254 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.172931225240016. ----------
17-03-18 04:37:48.254 -07 000000610 INF: Cycle	127	Tile	17	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:48.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36307, sync = True, waitForSettling = True)
17-03-18 04:37:48.264 -07 000000610 INF: Z Motor: Moving to -0.166203 mm, started at -0.172931 mm, distance = 6.73 um
17-03-18 04:37:48.264 -07 000000610 INF: FPGA: Xmit ZDACW 36307\n [Z Motor]
17-03-18 04:37:48.264 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:37:48.274 -07 000000610 INF: FPGA: 'ZDACW 36307' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:48.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:48.274 -07 000000591 INF: FPGA: Recv ZDACR 36307
17-03-18 04:37:48.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:48.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35160
17-03-18 04:37:48.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:48.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.444 -07 000000581 INF: FPGA: Recv ZSGSRD 35164
17-03-18 04:37:48.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.454 -07 000000569 INF: FPGA: Recv ZSGSRD 35160
17-03-18 04:37:48.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.464 -07 000000579 INF: FPGA: Recv ZSGSRD 35163
17-03-18 04:37:48.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.474 -07 000000625 INF: FPGA: Recv ZSGSRD 35161
17-03-18 04:37:48.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35165
17-03-18 04:37:48.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35168
17-03-18 04:37:48.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.504 -07 000000591 INF: FPGA: Recv ZSGSRD 35158
17-03-18 04:37:48.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.514 -07 000000447 INF: FPGA: Recv ZSGSRD 35163
17-03-18 04:37:48.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:48.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35165
17-03-18 04:37:48.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:48.534 -07 000000569 INF: FPGA: Recv ZPIEZORD 30831
17-03-18 04:37:48.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:48.544 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.5 V.
17-03-18 04:37:48.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35163 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35163 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35158 (-165.3 uncal um), Max = 35168 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:48.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35163, posNoise = 5, negNoise = 5
17-03-18 04:37:48.544 -07 000000610 INF: Z Motor: After move to -0.166203, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:48.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:37:48.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:48.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:48.544 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:48.544 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:48.544 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:48.544 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:48.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:48.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:48.544 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:37:48.544 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:48.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:48.544 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:48.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:48.554 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:48.554 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:48.554 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:48.564 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:37:48.564 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:37:48.564 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:37:48.564 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:37:48.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36484 150\n [Camera]
17-03-18 04:37:48.684 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.000345,
17-03-18 04:37:48.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:49.184 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:49.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:49.184 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:49.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:49.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:49.184 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:49.194 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:49.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 04:37:49.194 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:49.194 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-18 04:37:49.374 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36484 808
17-03-18 04:37:49.524 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:49.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:37:49.584 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:37:49.584 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:49.584 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:37:49.584 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:37:49.584 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:49.594 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:49.594 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:37:49.594 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:49.604 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:37:49.734 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:49.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:49.734 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:49.734 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:49.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:49.734 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:49.854 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:49.854 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:37:49.854 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:49.854 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:37:49.924 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:49.924 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:49.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36484 150' command took 2 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-18 04:37:49.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:49.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166217923551876. ------
17-03-18 04:37:49.924 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:49.924 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17209 mm
17-03-18 04:37:49.924 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:49.934 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:37:49.934 -07 000000579 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:37:49.934 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:49.934 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37594, sync = True, waitForSettling = False)
17-03-18 04:37:49.934 -07 000000608 INF: Z Motor: Moving to -0.172094 mm, started at -0.166218 mm, distance = -5.88 um
17-03-18 04:37:49.934 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:49.934 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:37:49.934 -07 000000480 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:37:49.944 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:49.944 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:49.944 -07 000000579 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:49.944 -07 000000579 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:49.944 -07 000000579 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:37:49.954 -07 000000608 INF: FPGA: Xmit ZDACW 37594\n [Z Motor]
17-03-18 04:37:49.954 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:37:49.964 -07 000000608 INF: FPGA: 'ZDACW 37594' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:37:49.964 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:49.974 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:49.974 -07 000000590 INF: FPGA: Recv ZDACR 37594
17-03-18 04:37:49.984 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:37:49.984 -07 000000608 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:37:50.144 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:50.144 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:37:50.254 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:37:50.254 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:37:50.254 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:50.254 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:37:50.254 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:37:50.254 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:50.264 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:50.264 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 04:37:50.264 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:50.264 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 04:37:50.334 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:37:50.334 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:37:50.374 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:50.384 -07 000000382 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:37:50.384 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 04:37:50.384 -07 000000579 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:50.384 -07 000000579 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:37:50.384 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-18 04:37:51.334 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:51.334 -07 000000590 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:37:51.344 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:51.344 -07 000000579 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:51.364 -07 000000579 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:51.364 -07 000000579 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:51.364 -07 000000579 INF: Y Motor: Moved to 74.0078 after 1433 ms (table move)
17-03-18 04:37:51.364 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172094 mm (DAC = 37594)
17-03-18 04:37:51.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.374 -07 000000581 INF: FPGA: Recv ZSGSRD 36087
17-03-18 04:37:51.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:37:51.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.374 -07 000000625 INF: FPGA: Recv ZSGSRD 36074
17-03-18 04:37:51.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.384 -07 000000590 INF: FPGA: Recv ZSGSRD 36082
17-03-18 04:37:51.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.394 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.394 -07 000000625 INF: FPGA: Recv ZSGSRD 36085
17-03-18 04:37:51.404 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.404 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.404 -07 000000480 INF: FPGA: Recv ZSGSRD 36081
17-03-18 04:37:51.414 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.414 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.414 -07 000000569 INF: FPGA: Recv ZSGSRD 36082
17-03-18 04:37:51.424 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.424 -07 000000590 INF: FPGA: Recv ZSGSRD 36079
17-03-18 04:37:51.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.434 -07 000000382 INF: FPGA: Recv ZSGSRD 36076
17-03-18 04:37:51.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.444 -07 000000590 INF: FPGA: Recv ZSGSRD 36077
17-03-18 04:37:51.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:51.454 -07 000000579 INF: FPGA: Recv ZSGSRD 36078
17-03-18 04:37:51.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.464 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:51.464 -07 000000590 INF: FPGA: Recv ZPIEZORD 32058
17-03-18 04:37:51.474 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:51.474 -07 000000591 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.9 V.
17-03-18 04:37:51.474 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36080 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36080 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36074 (-171.2 uncal um), Max = 36087 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:37:51.474 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36080, posNoise = 7, negNoise = 6
17-03-18 04:37:51.474 -07 000000591 INF: Z Motor: After move to -0.172094, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:51.474 -07 000000591 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-18 04:37:51.474 -07 000000591 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:51.524 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 04:37:51.524 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:51.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:51.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:51.524 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:51.524 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:51.524 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:51.534 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:51.534 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:51.534 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:51.534 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:37:51.534 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:51.544 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:37:51.544 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:37:51.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:51.584 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:51.684 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:51.884 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:51.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:51.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:51.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 04:37:51.924 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:51.924 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:51.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:37:52.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:37:52.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:52.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:52.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:37:52.024 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:52.024 -07 000000591 INF: Autofocus start
17-03-18 04:37:52.024 -07 000000591 INF: MeasureProfile start
17-03-18 04:37:52.024 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:52.034 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:52.034 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:52.034 -07 000000591 INF: MeasureProfile done
17-03-18 04:37:52.034 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:37:52.034 -07 000000591 INF: Autofocus finished
17-03-18 04:37:52.234 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:52.234 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:52.234 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.17210892608587. ----------
17-03-18 04:37:52.234 -07 000000610 INF: Cycle	127	Tile	18	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:52.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36090, sync = True, waitForSettling = True)
17-03-18 04:37:52.244 -07 000000610 INF: Z Motor: Moving to -0.165209 mm, started at -0.172109 mm, distance = 6.90 um
17-03-18 04:37:52.244 -07 000000610 INF: FPGA: Xmit ZDACW 36090\n [Z Motor]
17-03-18 04:37:52.244 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:37:52.254 -07 000000610 INF: FPGA: 'ZDACW 36090' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:52.254 -07 000000581 INF: FPGA: Recv ZDACR 36090
17-03-18 04:37:52.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.414 -07 000000591 INF: FPGA: Recv ZSGSRD 35008
17-03-18 04:37:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.424 -07 000000569 INF: FPGA: Recv ZSGSRD 35005
17-03-18 04:37:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.434 -07 000000382 INF: FPGA: Recv ZSGSRD 35019
17-03-18 04:37:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.444 -07 000000591 INF: FPGA: Recv ZSGSRD 35006
17-03-18 04:37:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.454 -07 000000579 INF: FPGA: Recv ZSGSRD 35008
17-03-18 04:37:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.464 -07 000000480 INF: FPGA: Recv ZSGSRD 35008
17-03-18 04:37:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.474 -07 000000480 INF: FPGA: Recv ZSGSRD 35006
17-03-18 04:37:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:52.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.484 -07 000000591 INF: FPGA: Recv ZSGSRD 35008
17-03-18 04:37:52.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.494 -07 000000480 INF: FPGA: Recv ZSGSRD 35003
17-03-18 04:37:52.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:52.504 -07 000000480 INF: FPGA: Recv ZSGSRD 35012
17-03-18 04:37:52.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:52.514 -07 000000581 INF: FPGA: Recv ZPIEZORD 30659
17-03-18 04:37:52.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:52.524 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.6 V.
17-03-18 04:37:52.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35008 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35008 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35003 (-164.3 uncal um), Max = 35019 (-164.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:37:52.524 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35008, posNoise = 11, negNoise = 5
17-03-18 04:37:52.524 -07 000000610 INF: Z Motor: After move to -0.165209, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:52.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:37:52.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:52.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:52.524 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:52.524 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:52.524 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:52.524 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:52.524 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:52.524 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:52.524 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:52.524 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:52.524 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:52.524 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:52.524 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:52.524 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:52.534 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:37:52.534 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:52.544 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:37:52.544 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:37:52.544 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:37:52.544 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:37:52.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36267 150\n [Camera]
17-03-18 04:37:52.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:53.174 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:53.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:53.174 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:53.184 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:53.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2573627664, 0x0, 391868352) start.
17-03-18 04:37:53.184 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:53.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:53.184 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:53.184 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:53.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2609049928, 0x0, 418435064) start.
17-03-18 04:37:53.364 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36267 808
17-03-18 04:37:53.514 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:53.574 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2573627664, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:37:53.574 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:37:53.574 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:53.574 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:53.574 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:37:53.584 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2609049928, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:37:53.584 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:37:53.584 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:53.584 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:53.594 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:37:53.714 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:53.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:53.724 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:53.724 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:53.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:53.724 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:53.724 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:53.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:37:53.724 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:53.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:37:53.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:37:53.914 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:53.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36267 150' command took 2 ms to send, 1351 ms to get response, and 1360 ms overall
17-03-18 04:37:54.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:37:54.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165222170669903. ------
17-03-18 04:37:54.024 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17158 mm
17-03-18 04:37:54.024 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:54.024 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:54.034 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:37:54.034 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:37:54.034 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37481, sync = True, waitForSettling = False)
17-03-18 04:37:54.034 -07 000000625 INF: Z Motor: Moving to -0.171577 mm, started at -0.165222 mm, distance = -6.35 um
17-03-18 04:37:54.034 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:54.034 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:37:54.044 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:54.044 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.977204,
17-03-18 04:37:54.044 -07 000000474 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:37:54.054 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:37:54.054 -07 000000625 INF: FPGA: Xmit ZDACW 37481\n [Z Motor]
17-03-18 04:37:54.054 -07 000000591 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:54.054 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:37:54.054 -07 000000591 INF: Y Motor: Moving 1352 steps-30
17-03-18 04:37:54.054 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:37:54.064 -07 000000625 INF: FPGA: 'ZDACW 37481' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:54.064 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:54.084 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:37:54.094 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:54.094 -07 000000626 INF: FPGA: Recv ZDACR 37481
17-03-18 04:37:54.104 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:37:54.104 -07 000000625 INF: Z Motor: MoveAbsStepped took 69 ms (did NOT wait for settling yet))
17-03-18 04:37:54.104 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:37:54.104 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:37:54.104 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:54.114 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:37:54.114 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:37:54.114 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:54.114 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:54.114 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:54.114 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:37:54.124 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:37:54.264 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:54.264 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 231 ms overall
17-03-18 04:37:54.454 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:37:54.454 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 408 ms overall
17-03-18 04:37:54.494 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:54.494 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:37:54.504 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:54.504 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:54.504 -07 000000591 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:37:54.504 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.845 mm, average velocity = 2.071 mm/sec
17-03-18 04:37:55.454 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:55.454 -07 000000512 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:37:55.464 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:55.464 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:55.484 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:37:55.484 -07 000000591 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:37:55.484 -07 000000591 INF: Y Motor: Moved to 74.8311 after 1450 ms (table move)
17-03-18 04:37:55.484 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171577 mm (DAC = 37481)
17-03-18 04:37:55.484 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.484 -07 000000502 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:37:55.494 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:55.494 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:37:55.504 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.504 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.504 -07 000000512 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:37:55.514 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.514 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.514 -07 000000591 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:37:55.524 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.524 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.524 -07 000000512 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:37:55.534 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.534 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.534 -07 000000502 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:37:55.544 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.544 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.544 -07 000000474 INF: FPGA: Recv ZSGSRD 36005
17-03-18 04:37:55.554 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.554 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.554 -07 000000474 INF: FPGA: Recv ZSGSRD 35993
17-03-18 04:37:55.564 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.564 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35991
17-03-18 04:37:55.574 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.574 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:55.574 -07 000000474 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:37:55.584 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.584 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:55.584 -07 000000626 INF: FPGA: Recv ZPIEZORD 31956
17-03-18 04:37:55.594 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:55.594 -07 000000480 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.9 V.
17-03-18 04:37:55.594 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35999 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36000 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35991 (-170.7 uncal um), Max = 36005 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:37:55.594 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35999, posNoise = 6, negNoise = 8
17-03-18 04:37:55.594 -07 000000480 INF: Z Motor: After move to -0.171577, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:55.594 -07 000000480 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:37:55.594 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:37:55.644 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:37:55.644 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:37:55.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:55.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:55.644 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:55.644 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:55.644 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:37:55.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:55.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:55.644 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:37:55.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:55.654 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:37:55.664 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:37:55.664 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:37:55.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:37:55.714 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:37:56.014 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:37:56.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:37:56.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:37:56.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:37:56.054 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:37:56.054 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:37:56.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:37:56.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:37:56.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:56.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:37:56.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:37:56.154 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:56.154 -07 000000512 INF: Autofocus start
17-03-18 04:37:56.154 -07 000000512 INF: MeasureProfile start
17-03-18 04:37:56.154 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:56.164 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:56.164 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:37:56.164 -07 000000512 INF: MeasureProfile done
17-03-18 04:37:56.164 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:37:56.164 -07 000000512 INF: Autofocus finished
17-03-18 04:37:56.364 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:37:56.364 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:37:56.364 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171588564902388. ----------
17-03-18 04:37:56.364 -07 000000610 INF: Cycle	127	Tile	19	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:37:56.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35996, sync = True, waitForSettling = True)
17-03-18 04:37:56.374 -07 000000610 INF: Z Motor: Moving to -0.164779 mm, started at -0.171589 mm, distance = 6.81 um
17-03-18 04:37:56.374 -07 000000610 INF: FPGA: Xmit ZDACW 35996\n [Z Motor]
17-03-18 04:37:56.374 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:37:56.384 -07 000000610 INF: FPGA: 'ZDACW 35996' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:56.384 -07 000000626 INF: FPGA: Recv ZDACR 35996
17-03-18 04:37:56.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:37:56.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.544 -07 000000591 INF: FPGA: Recv ZSGSRD 34947
17-03-18 04:37:56.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:56.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.554 -07 000000569 INF: FPGA: Recv ZSGSRD 34943
17-03-18 04:37:56.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.564 -07 000000480 INF: FPGA: Recv ZSGSRD 34939
17-03-18 04:37:56.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.574 -07 000000512 INF: FPGA: Recv ZSGSRD 34939
17-03-18 04:37:56.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.584 -07 000000502 INF: FPGA: Recv ZSGSRD 34938
17-03-18 04:37:56.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.594 -07 000000480 INF: FPGA: Recv ZSGSRD 34942
17-03-18 04:37:56.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.604 -07 000000502 INF: FPGA: Recv ZSGSRD 34936
17-03-18 04:37:56.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.614 -07 000000626 INF: FPGA: Recv ZSGSRD 34941
17-03-18 04:37:56.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.624 -07 000000512 INF: FPGA: Recv ZSGSRD 34940
17-03-18 04:37:56.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:37:56.634 -07 000000480 INF: FPGA: Recv ZSGSRD 34939
17-03-18 04:37:56.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:37:56.644 -07 000000474 INF: FPGA: Recv ZPIEZORD 30573
17-03-18 04:37:56.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:37:56.654 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.493 V. Piezo Error = -9.6 V.
17-03-18 04:37:56.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34940 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34940 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34936 (-163.9 uncal um), Max = 34947 (-164.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:37:56.654 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34940, posNoise = 7, negNoise = 4
17-03-18 04:37:56.654 -07 000000610 INF: Z Motor: After move to -0.164779, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:37:56.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:37:56.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:37:56.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:37:56.654 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:37:56.654 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:37:56.654 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:37:56.654 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:37:56.654 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:37:56.654 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:37:56.654 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:37:56.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:37:56.654 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:37:56.654 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:37:56.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:37:56.654 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:37:56.664 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:37:56.664 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:37:56.664 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:37:56.664 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:37:56.664 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:37:56.664 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:37:56.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 36172 150\n [Camera]
17-03-18 04:37:56.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:37:56.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:37:56.874 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:37:57.294 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:37:57.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:37:57.294 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:57.304 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:37:57.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:37:57.304 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:57.304 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:57.304 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:37:57.304 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:57.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:37:57.484 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36172 808
17-03-18 04:37:57.634 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:37:57.674 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:37:57.674 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:37:57.674 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:57.674 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:37:57.674 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:37:57.674 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:57.684 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:57.684 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:37:57.684 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:37:57.684 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:37:57.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:37:57.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:37:57.844 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:37:57.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:37:57.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:37:57.844 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:37:57.854 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:37:57.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:37:57.854 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:37:57.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:37:58.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:37:58.034 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:37:58.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 36172 150' command took 2 ms to send, 1355 ms to get response, and 1360 ms overall
17-03-18 04:37:58.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:37:58.234 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:37:58.234 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:58.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:37:58.234 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:37:58.244 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:37:58.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:37:58.244 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:37:58.244 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:37:58.244 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:37:58.244 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:37:58.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:37:58.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:37:58.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:37:58.334 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:37:58.334 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:37:58.334 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-18 04:37:58.344 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:37:58.344 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:37:58.844 -07 000000447 INF: FPGA: Recv EMIN
17-03-18 04:37:58.844 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:37:58.844 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:37:58.844 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 04:37:58.854 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:37:58.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:37:58.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164785324244263. ------
17-03-18 04:37:58.854 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:37:58.854 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13930 mm
17-03-18 04:37:58.854 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:37:58.854 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:37:58.854 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:37:58.854 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 04:37:58.854 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30431, sync = True, waitForSettling = False)
17-03-18 04:37:58.854 -07 000000591 INF: Z Motor: Moving to -0.139304 mm, started at -0.164785 mm, distance = 25.48 um
17-03-18 04:37:58.864 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:37:58.864 -07 000000591 INF: FPGA: Xmit ZDACW 30431\n [Z Motor]
17-03-18 04:37:58.864 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:37:58.874 -07 000000591 INF: FPGA: 'ZDACW 30431' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:37:58.874 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:37:58.874 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:37:58.884 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:37:58.884 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:37:58.884 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:37:58.884 -07 000000480 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:37:58.884 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:37:58.894 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:37:58.894 -07 000000579 INF: FPGA: Recv ZDACR 30431
17-03-18 04:37:58.904 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:37:58.904 -07 000000591 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:37:58.904 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:37:59.084 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:37:59.084 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 04:37:59.464 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.990831,
17-03-18 04:38:00.524 -07 000000590 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 04:38:00.524 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-18 04:38:00.524 -07 000000480 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:38:00.524 -07 000000480 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 04:38:00.524 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.097 mm/sec
17-03-18 04:38:01.684 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:01.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:03.374 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:03.374 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-18 04:38:03.384 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.384 -07 000000480 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:03.424 -07 000000480 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:03.424 -07 000000480 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 04:38:03.424 -07 000000480 INF: Y Motor: Moved to 59.9111 after 4560 ms
17-03-18 04:38:03.424 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139304 mm (DAC = 30431)
17-03-18 04:38:03.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.424 -07 000000581 INF: FPGA: Recv ZSGSRD 30978
17-03-18 04:38:03.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:03.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.434 -07 000000382 INF: FPGA: Recv ZSGSRD 30981
17-03-18 04:38:03.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.444 -07 000000512 INF: FPGA: Recv ZSGSRD 30971
17-03-18 04:38:03.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.454 -07 000000590 INF: FPGA: Recv ZSGSRD 30975
17-03-18 04:38:03.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.464 -07 000000590 INF: FPGA: Recv ZSGSRD 30974
17-03-18 04:38:03.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:03.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30967
17-03-18 04:38:03.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.484 -07 000000501 INF: FPGA: Recv ZSGSRD 30967
17-03-18 04:38:03.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.494 -07 000000474 INF: FPGA: Recv ZSGSRD 30971
17-03-18 04:38:03.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.504 -07 000000474 INF: FPGA: Recv ZSGSRD 30979
17-03-18 04:38:03.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:03.514 -07 000000474 INF: FPGA: Recv ZSGSRD 30982
17-03-18 04:38:03.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.524 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:03.524 -07 000000501 INF: FPGA: Recv ZPIEZORD 26400
17-03-18 04:38:03.534 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:03.534 -07 000000626 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.0 V.
17-03-18 04:38:03.534 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30974 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30982 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:38:03.534 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30974, posNoise = 8, negNoise = 7
17-03-18 04:38:03.534 -07 000000626 INF: Z Motor: After move to -0.139304, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:03.534 -07 000000626 INF: Z Motor: Settle wait time = 4564 ms, measure time = 106 ms (allowed 150 ms), total time = 4670 ms
17-03-18 04:38:03.534 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:03.584 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4725 ms
17-03-18 04:38:03.584 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:03.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:03.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:03.584 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:03.584 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:03.584 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:03.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:03.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:38:03.584 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:38:03.614 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:38:03.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:03.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:38:03.614 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:03.634 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:38:03.634 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 04:38:03.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:03.684 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:38:03.984 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:38:03.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:38:03.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:03.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:38:04.014 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:04.014 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:04.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:38:04.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 04:38:04.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:04.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:38:04.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:38:04.214 -07 000000626 INF: Image SNR check: start
17-03-18 04:38:04.214 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:04.224 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=124.41]
17-03-18 04:38:04.224 -07 000000626 INF: Autofocus start
17-03-18 04:38:04.224 -07 000000626 INF: MeasureProfile start
17-03-18 04:38:04.244 -07 000000626 INF: MeasureProfile done
17-03-18 04:38:04.244 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:38:04.244 -07 000000626 INF: Autofocus finished
17-03-18 04:38:04.244 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:04.244 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 22 ms to get response, and 28 ms overall
17-03-18 04:38:04.244 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:04.444 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:04.444 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:38:04.444 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139306898890039. ----------
17-03-18 04:38:04.454 -07 000000610 INF: Cycle	127	Tile	1	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:04.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28925, sync = True, waitForSettling = True)
17-03-18 04:38:04.454 -07 000000610 INF: Z Motor: Moving to -0.132410 mm, started at -0.139307 mm, distance = 6.90 um
17-03-18 04:38:04.454 -07 000000610 INF: FPGA: Xmit ZDACW 28925\n [Z Motor]
17-03-18 04:38:04.454 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:38:04.464 -07 000000610 INF: FPGA: 'ZDACW 28925' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:04.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:04.464 -07 000000626 INF: FPGA: Recv ZDACR 28925
17-03-18 04:38:04.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29900
17-03-18 04:38:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.634 -07 000000501 INF: FPGA: Recv ZSGSRD 29902
17-03-18 04:38:04.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.644 -07 000000626 INF: FPGA: Recv ZSGSRD 29896
17-03-18 04:38:04.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.654 -07 000000501 INF: FPGA: Recv ZSGSRD 29895
17-03-18 04:38:04.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.664 -07 000000626 INF: FPGA: Recv ZSGSRD 29903
17-03-18 04:38:04.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.674 -07 000000626 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:38:04.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.684 -07 000000625 INF: FPGA: Recv ZSGSRD 29898
17-03-18 04:38:04.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.694 -07 000000626 INF: FPGA: Recv ZSGSRD 29896
17-03-18 04:38:04.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29899
17-03-18 04:38:04.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:04.714 -07 000000625 INF: FPGA: Recv ZSGSRD 29909
17-03-18 04:38:04.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:04.724 -07 000000625 INF: FPGA: Recv ZPIEZORD 25270
17-03-18 04:38:04.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:04.734 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -10.2 V.
17-03-18 04:38:04.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29900 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29900 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29895 (-131.6 uncal um), Max = 29909 (-131.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:38:04.734 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29900, posNoise = 9, negNoise = 5
17-03-18 04:38:04.734 -07 000000610 INF: Z Motor: After move to -0.132410, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:04.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:38:04.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:04.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:04.734 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:04.734 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:04.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:04.734 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:04.734 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:04.734 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:04.734 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:38:04.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:38:04.734 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:38:04.734 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:04.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:04.744 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:04.754 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:04.754 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:38:04.764 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:38:04.764 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:04.764 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:04.764 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:04.774 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:38:04.774 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 04:38:04.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 29102 150\n [Camera]
17-03-18 04:38:04.834 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.960826,
17-03-18 04:38:04.974 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:05.394 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:05.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:05.394 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:05.394 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:05.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:38:05.404 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:05.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:05.404 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:05.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:05.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:38:05.594 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29102 808
17-03-18 04:38:05.744 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:05.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:38:05.774 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:38:05.774 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:38:05.774 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:05.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:38:05.774 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:05.784 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:38:05.784 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:38:05.784 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:38:05.794 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:38:05.944 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:05.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:05.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:05.944 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:05.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:38:05.944 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:05.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:05.944 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:05.944 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:05.944 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:38:06.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:38:06.134 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:06.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 29102 150' command took 2 ms to send, 1356 ms to get response, and 1363 ms overall
17-03-18 04:38:06.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:06.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132407295049788. ------
17-03-18 04:38:06.144 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:06.144 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13887 mm
17-03-18 04:38:06.144 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:06.254 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:06.254 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-18 04:38:06.254 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:06.254 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:38:06.254 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 04:38:06.264 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30336, sync = True, waitForSettling = False)
17-03-18 04:38:06.264 -07 000000480 INF: Z Motor: Moving to -0.138869 mm, started at -0.132407 mm, distance = -6.46 um
17-03-18 04:38:06.264 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:06.264 -07 000000626 INF: FPGA: Recv YRDPOS 122698
17-03-18 04:38:06.274 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:06.274 -07 000000480 INF: FPGA: Xmit ZDACW 30336\n [Z Motor]
17-03-18 04:38:06.274 -07 000000608 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:06.274 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:06.274 -07 000000608 INF: Y Motor: Moving 1330 steps2
17-03-18 04:38:06.274 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:38:06.284 -07 000000480 INF: FPGA: 'ZDACW 30336' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:38:06.284 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:06.284 -07 000000618 INF: FPGA: Recv ZDACR 30336
17-03-18 04:38:06.294 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:06.294 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:06.294 -07 000000480 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 04:38:06.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:38:06.334 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:38:06.334 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:06.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:38:06.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:38:06.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:06.334 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:06.344 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:38:06.344 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:38:06.344 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:38:07.074 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:07.074 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:38:07.074 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:07.074 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 771 ms to get response, and 800 ms overall
17-03-18 04:38:07.074 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:07.074 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 811 ms to get response, and 813 ms overall
17-03-18 04:38:07.114 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:07.114 -07 000000591 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:38:07.124 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:07.124 -07 000000608 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:07.124 -07 000000608 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:38:07.124 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 800 ms, distance = 0.831 mm, average velocity = 1.039 mm/sec
17-03-18 04:38:08.074 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:08.074 -07 000000626 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:38:08.084 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.084 -07 000000608 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:08.114 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:08.114 -07 000000608 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:08.114 -07 000000608 INF: Y Motor: Moved to 60.7329 after 1853 ms (table move)
17-03-18 04:38:08.114 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138869 mm (DAC = 30336)
17-03-18 04:38:08.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.114 -07 000000480 INF: FPGA: Recv ZSGSRD 30914
17-03-18 04:38:08.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:38:08.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.124 -07 000000569 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:38:08.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.134 -07 000000382 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:38:08.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.144 -07 000000618 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:38:08.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.154 -07 000000382 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:38:08.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30896
17-03-18 04:38:08.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.174 -07 000000581 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:38:08.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.184 -07 000000501 INF: FPGA: Recv ZSGSRD 30911
17-03-18 04:38:08.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.194 -07 000000382 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:38:08.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:08.204 -07 000000382 INF: FPGA: Recv ZSGSRD 30914
17-03-18 04:38:08.214 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.214 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:08.214 -07 000000581 INF: FPGA: Recv ZPIEZORD 26647
17-03-18 04:38:08.224 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:08.224 -07 000000424 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.4 V.
17-03-18 04:38:08.224 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30907 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30907 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30896 (-138.0 uncal um), Max = 30914 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:38:08.224 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30907, posNoise = 7, negNoise = 11
17-03-18 04:38:08.224 -07 000000424 INF: Z Motor: After move to -0.138869, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:08.224 -07 000000424 INF: Z Motor: Settle wait time = 1855 ms, measure time = 106 ms (allowed 150 ms), total time = 1961 ms
17-03-18 04:38:08.224 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:08.274 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2127 ms
17-03-18 04:38:08.274 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:08.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:08.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:08.274 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:08.274 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:08.274 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:08.274 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:08.274 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:08.274 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:08.284 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:08.284 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:08.294 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:38:08.294 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:38:08.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:08.344 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:08.644 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:08.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:08.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:08.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:08.684 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:08.684 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:08.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 04:38:08.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 04:38:08.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:08.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:08.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 04:38:08.884 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:08.884 -07 000000626 INF: Autofocus start
17-03-18 04:38:08.884 -07 000000626 INF: MeasureProfile start
17-03-18 04:38:08.884 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:08.894 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:08.894 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:08.894 -07 000000626 INF: MeasureProfile done
17-03-18 04:38:08.894 -07 000000626 INF: X=7  Z correction [um]=0.009724405
17-03-18 04:38:08.894 -07 000000626 INF: Autofocus finished
17-03-18 04:38:09.094 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:09.094 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:09.094 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138876476676541. ----------
17-03-18 04:38:09.094 -07 000000610 INF: Cycle	127	Tile	2	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:09.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28850, sync = True, waitForSettling = True)
17-03-18 04:38:09.104 -07 000000610 INF: Z Motor: Moving to -0.132067 mm, started at -0.138876 mm, distance = 6.81 um
17-03-18 04:38:09.104 -07 000000610 INF: FPGA: Xmit ZDACW 28850\n [Z Motor]
17-03-18 04:38:09.104 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:38:09.114 -07 000000610 INF: FPGA: 'ZDACW 28850' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:09.114 -07 000000501 INF: FPGA: Recv ZDACR 28850
17-03-18 04:38:09.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:09.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.274 -07 000000424 INF: FPGA: Recv ZSGSRD 29853
17-03-18 04:38:09.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.284 -07 000000591 INF: FPGA: Recv ZSGSRD 29854
17-03-18 04:38:09.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.294 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:38:09.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.304 -07 000000626 INF: FPGA: Recv ZSGSRD 29842
17-03-18 04:38:09.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.314 -07 000000480 INF: FPGA: Recv ZSGSRD 29853
17-03-18 04:38:09.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.324 -07 000000382 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:38:09.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.334 -07 000000591 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:38:09.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.344 -07 000000501 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:38:09.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.354 -07 000000626 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:38:09.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:09.364 -07 000000424 INF: FPGA: Recv ZSGSRD 29854
17-03-18 04:38:09.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:09.374 -07 000000569 INF: FPGA: Recv ZPIEZORD 25254
17-03-18 04:38:09.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:09.384 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 04:38:09.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29849 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29854 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:38:09.384 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29849, posNoise = 5, negNoise = 7
17-03-18 04:38:09.384 -07 000000610 INF: Z Motor: After move to -0.132067, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:09.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:38:09.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:09.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:09.384 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:09.384 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:09.384 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:09.384 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:09.384 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:09.384 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:09.384 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:09.384 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:09.384 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:09.384 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:09.384 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:09.384 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:09.394 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:09.394 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:09.404 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:38:09.404 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:38:09.404 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:38:09.404 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:38:09.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 29027 150\n [Camera]
17-03-18 04:38:09.604 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:10.034 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:10.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:10.034 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:10.034 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:10.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:10.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:10.034 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:10.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:10.044 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:10.044 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:10.204 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.960826,
17-03-18 04:38:10.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29027 808
17-03-18 04:38:10.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:10.434 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:38:10.434 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:38:10.434 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:10.434 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:38:10.434 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:38:10.434 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:10.434 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:10.434 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:38:10.434 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:10.444 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:38:10.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:10.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:10.574 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:10.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:10.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:10.584 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:10.584 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:10.584 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:38:10.584 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:10.584 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:38:10.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:10.774 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:10.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 29027 150' command took 2 ms to send, 1350 ms to get response, and 1360 ms overall
17-03-18 04:38:10.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:10.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132079660230558. ------
17-03-18 04:38:10.774 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:10.774 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13887 mm
17-03-18 04:38:10.774 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:10.774 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:38:10.774 -07 000000581 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 04:38:10.774 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30336, sync = True, waitForSettling = False)
17-03-18 04:38:10.774 -07 000000618 INF: Z Motor: Moving to -0.138869 mm, started at -0.132080 mm, distance = -6.79 um
17-03-18 04:38:10.774 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:10.784 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:10.784 -07 000000618 INF: FPGA: Xmit ZDACW 30336\n [Z Motor]
17-03-18 04:38:10.784 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:38:10.794 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:10.794 -07 000000618 INF: FPGA: 'ZDACW 30336' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:38:10.794 -07 000000424 INF: FPGA: Recv YRDPOS 124382
17-03-18 04:38:10.804 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:38:10.804 -07 000000581 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:10.804 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:10.924 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:10.934 -07 000000590 INF: FPGA: Recv ZDACR 30336
17-03-18 04:38:10.934 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 04:38:10.934 -07 000000618 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-18 04:38:10.934 -07 000000581 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:10.934 -07 000000581 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:38:10.934 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:10.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:38:10.984 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:38:10.984 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:10.984 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:10.984 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:38:10.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:38:10.984 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:38:10.984 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:10.994 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:10.994 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:38:11.004 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:11.004 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 76 ms to get response, and 223 ms overall
17-03-18 04:38:11.314 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:38:11.314 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 04:38:11.364 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:11.364 -07 000000606 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:38:11.374 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:11.374 -07 000000581 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:11.374 -07 000000581 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:38:11.374 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-18 04:38:11.694 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:12.324 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:12.324 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:38:12.334 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.334 -07 000000581 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:12.374 -07 000000581 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:12.374 -07 000000581 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:12.374 -07 000000581 INF: Y Motor: Moved to 61.5640 after 1598 ms (table move)
17-03-18 04:38:12.374 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138869 mm (DAC = 30336)
17-03-18 04:38:12.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.384 -07 000000502 INF: FPGA: Recv ZSGSRD 30916
17-03-18 04:38:12.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:38:12.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.384 -07 000000606 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:38:12.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:12.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.394 -07 000000447 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:38:12.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.404 -07 000000502 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:38:12.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30912
17-03-18 04:38:12.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.424 -07 000000447 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:38:12.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.434 -07 000000382 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:38:12.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.444 -07 000000569 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:38:12.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.454 -07 000000447 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:38:12.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:12.464 -07 000000581 INF: FPGA: Recv ZSGSRD 30911
17-03-18 04:38:12.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.474 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:12.474 -07 000000447 INF: FPGA: Recv ZPIEZORD 26654
17-03-18 04:38:12.484 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:12.484 -07 000000626 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 04:38:12.484 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30907 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30899 (-138.0 uncal um), Max = 30916 (-138.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:38:12.484 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30907, posNoise = 9, negNoise = 8
17-03-18 04:38:12.484 -07 000000626 INF: Z Motor: After move to -0.138869, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:12.484 -07 000000626 INF: Z Motor: Settle wait time = 1601 ms, measure time = 101 ms (allowed 150 ms), total time = 1702 ms
17-03-18 04:38:12.484 -07 000000626 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:12.534 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1755 ms
17-03-18 04:38:12.534 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:12.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:12.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:12.534 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:12.534 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:12.534 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:12.534 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:12.534 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:38:12.534 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:12.544 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:12.544 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:12.554 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:38:12.554 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:38:12.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:12.604 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:12.904 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:12.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:12.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:12.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:12.944 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:12.944 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:12.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:38:13.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:38:13.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:13.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:13.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:38:13.044 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:13.044 -07 000000618 INF: Autofocus start
17-03-18 04:38:13.044 -07 000000618 INF: MeasureProfile start
17-03-18 04:38:13.044 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:13.054 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:13.054 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:13.054 -07 000000618 INF: MeasureProfile done
17-03-18 04:38:13.054 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:38:13.054 -07 000000618 INF: Autofocus finished
17-03-18 04:38:13.254 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:13.254 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:13.254 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138876476676541. ----------
17-03-18 04:38:13.264 -07 000000610 INF: Cycle	127	Tile	3	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:13.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28843, sync = True, waitForSettling = True)
17-03-18 04:38:13.264 -07 000000610 INF: Z Motor: Moving to -0.132035 mm, started at -0.138876 mm, distance = 6.84 um
17-03-18 04:38:13.264 -07 000000610 INF: FPGA: Xmit ZDACW 28843\n [Z Motor]
17-03-18 04:38:13.264 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:38:13.274 -07 000000610 INF: FPGA: 'ZDACW 28843' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:13.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:13.274 -07 000000447 INF: FPGA: Recv ZDACR 28843
17-03-18 04:38:13.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:13.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.434 -07 000000581 INF: FPGA: Recv ZSGSRD 29839
17-03-18 04:38:13.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.444 -07 000000512 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:38:13.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.454 -07 000000501 INF: FPGA: Recv ZSGSRD 29841
17-03-18 04:38:13.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.464 -07 000000626 INF: FPGA: Recv ZSGSRD 29836
17-03-18 04:38:13.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.474 -07 000000581 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:38:13.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.484 -07 000000447 INF: FPGA: Recv ZSGSRD 29842
17-03-18 04:38:13.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.494 -07 000000626 INF: FPGA: Recv ZSGSRD 29843
17-03-18 04:38:13.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.504 -07 000000512 INF: FPGA: Recv ZSGSRD 29841
17-03-18 04:38:13.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.514 -07 000000581 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:38:13.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:13.524 -07 000000626 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:38:13.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:13.534 -07 000000501 INF: FPGA: Recv ZPIEZORD 25230
17-03-18 04:38:13.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:13.544 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.1 V.
17-03-18 04:38:13.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29843 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29842 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29836 (-131.2 uncal um), Max = 29847 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:38:13.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29843, posNoise = 4, negNoise = 7
17-03-18 04:38:13.544 -07 000000610 INF: Z Motor: After move to -0.132035, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:13.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:38:13.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:13.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:13.544 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:13.544 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:13.544 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:13.544 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:13.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:13.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:13.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:38:13.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:13.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:13.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:13.554 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:13.554 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:13.554 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:13.554 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:13.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:38:13.564 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:38:13.564 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:38:13.564 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:38:13.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 29020 150\n [Camera]
17-03-18 04:38:13.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:14.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-18 04:38:14.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-18 04:38:14.194 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:14.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-18 04:38:14.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-18 04:38:14.194 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:14.204 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:14.204 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:14.204 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:14.204 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:14.384 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29020 811
17-03-18 04:38:14.534 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:14.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:38:14.574 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:38:14.574 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:14.574 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:14.584 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:38:14.584 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:38:14.584 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:38:14.584 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:14.584 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:14.584 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:38:14.734 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:14.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:14.734 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:14.734 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:14.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:14.734 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:14.734 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:14.734 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:38:14.744 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:14.744 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:38:14.924 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:14.924 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:14.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 29020 150' command took 2 ms to send, 1356 ms to get response, and 1361 ms overall
17-03-18 04:38:14.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:14.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132041114957707. ------
17-03-18 04:38:14.934 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13836 mm
17-03-18 04:38:14.934 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:14.934 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:14.934 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:38:14.934 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30225, sync = True, waitForSettling = False)
17-03-18 04:38:14.934 -07 000000501 INF: Z Motor: Moving to -0.138361 mm, started at -0.132041 mm, distance = -6.32 um
17-03-18 04:38:14.934 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 04:38:14.934 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:14.944 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:14.944 -07 000000501 INF: FPGA: Xmit ZDACW 30225\n [Z Motor]
17-03-18 04:38:14.944 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:38:14.954 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:14.954 -07 000000501 INF: FPGA: 'ZDACW 30225' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:38:14.954 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:38:14.964 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:38:14.964 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:14.964 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:14.964 -07 000000626 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:38:14.964 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:14.974 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:14.974 -07 000000512 INF: FPGA: Recv ZDACR 30225
17-03-18 04:38:14.984 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:14.984 -07 000000501 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:38:14.984 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:15.134 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:38:15.134 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:38:15.134 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:15.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:38:15.144 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:38:15.144 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:15.144 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:15.144 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:38:15.144 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:15.154 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:38:15.164 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:15.164 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:38:15.354 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:38:15.354 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:38:15.404 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:15.404 -07 000000625 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:38:15.414 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:15.414 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:15.414 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 04:38:15.414 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 04:38:15.574 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.989471,
17-03-18 04:38:16.364 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:16.364 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:38:16.374 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:16.374 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:16.404 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:16.404 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:16.404 -07 000000626 INF: Y Motor: Moved to 62.3955 after 1463 ms (table move)
17-03-18 04:38:16.404 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138361 mm (DAC = 30225)
17-03-18 04:38:16.404 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.404 -07 000000626 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:38:16.414 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:16.414 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30835
17-03-18 04:38:16.424 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30830
17-03-18 04:38:16.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.434 -07 000000591 INF: FPGA: Recv ZSGSRD 30826
17-03-18 04:38:16.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.444 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.444 -07 000000579 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:38:16.454 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.454 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.454 -07 000000579 INF: FPGA: Recv ZSGSRD 30827
17-03-18 04:38:16.464 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.464 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.464 -07 000000591 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:38:16.474 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.474 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.474 -07 000000625 INF: FPGA: Recv ZSGSRD 30828
17-03-18 04:38:16.484 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.484 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.484 -07 000000591 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:38:16.494 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.494 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:16.494 -07 000000447 INF: FPGA: Recv ZSGSRD 30830
17-03-18 04:38:16.504 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.504 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:16.504 -07 000000626 INF: FPGA: Recv ZPIEZORD 26581
17-03-18 04:38:16.514 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:16.514 -07 000000581 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.3 V.
17-03-18 04:38:16.514 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30829 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30829 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30835 (-137.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:38:16.514 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30829, posNoise = 6, negNoise = 6
17-03-18 04:38:16.514 -07 000000581 INF: Z Motor: After move to -0.138361, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:16.514 -07 000000581 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:38:16.514 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:16.564 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:38:16.564 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:16.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:16.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:16.564 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:16.564 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:16.564 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:16.564 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:16.564 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:38:16.564 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:16.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:16.574 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:16.574 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:38:16.574 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:38:16.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:16.624 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:16.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:16.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:16.924 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:16.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:16.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:16.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:38:16.964 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:16.964 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:16.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:38:17.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:38:17.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:17.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:17.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:38:17.064 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:17.064 -07 000000512 INF: Autofocus start
17-03-18 04:38:17.064 -07 000000512 INF: MeasureProfile start
17-03-18 04:38:17.064 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:17.074 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:17.074 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:17.084 -07 000000512 INF: MeasureProfile done
17-03-18 04:38:17.084 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:38:17.084 -07 000000512 INF: Autofocus finished
17-03-18 04:38:17.274 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:17.274 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:17.274 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138375388129484. ----------
17-03-18 04:38:17.274 -07 000000610 INF: Cycle	127	Tile	4	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:17.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28733, sync = True, waitForSettling = True)
17-03-18 04:38:17.284 -07 000000610 INF: Z Motor: Moving to -0.131531 mm, started at -0.138375 mm, distance = 6.84 um
17-03-18 04:38:17.284 -07 000000610 INF: FPGA: Xmit ZDACW 28733\n [Z Motor]
17-03-18 04:38:17.284 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:38:17.294 -07 000000610 INF: FPGA: 'ZDACW 28733' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:17.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:17.294 -07 000000474 INF: FPGA: Recv ZDACR 28733
17-03-18 04:38:17.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.454 -07 000000512 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:38:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.464 -07 000000626 INF: FPGA: Recv ZSGSRD 29765
17-03-18 04:38:17.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.474 -07 000000626 INF: FPGA: Recv ZSGSRD 29764
17-03-18 04:38:17.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.484 -07 000000474 INF: FPGA: Recv ZSGSRD 29765
17-03-18 04:38:17.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.494 -07 000000626 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:38:17.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.504 -07 000000474 INF: FPGA: Recv ZSGSRD 29760
17-03-18 04:38:17.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.514 -07 000000626 INF: FPGA: Recv ZSGSRD 29766
17-03-18 04:38:17.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.524 -07 000000447 INF: FPGA: Recv ZSGSRD 29761
17-03-18 04:38:17.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.534 -07 000000626 INF: FPGA: Recv ZSGSRD 29761
17-03-18 04:38:17.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:17.544 -07 000000447 INF: FPGA: Recv ZSGSRD 29761
17-03-18 04:38:17.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:17.554 -07 000000447 INF: FPGA: Recv ZPIEZORD 25168
17-03-18 04:38:17.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:17.564 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -10.1 V.
17-03-18 04:38:17.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29763 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29762 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29760 (-130.7 uncal um), Max = 29766 (-130.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:38:17.564 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29763, posNoise = 3, negNoise = 3
17-03-18 04:38:17.564 -07 000000610 INF: Z Motor: After move to -0.131531, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:17.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:38:17.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:17.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:17.564 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:17.564 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:17.564 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:17.564 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:17.564 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:17.564 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:17.564 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:17.564 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:17.564 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:17.564 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:17.574 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:17.574 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:17.574 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:17.574 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:17.584 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:38:17.584 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:38:17.584 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:38:17.584 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:38:17.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28909 150\n [Camera]
17-03-18 04:38:17.784 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:18.204 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:18.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:18.214 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:18.214 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:18.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:38:18.214 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:18.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:18.214 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:18.214 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:18.214 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:38:18.404 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28909 808
17-03-18 04:38:18.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:18.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:38:18.614 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:38:18.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:18.614 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:38:18.614 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:38:18.614 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:18.614 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:18.614 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:38:18.614 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:18.624 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:38:18.754 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:18.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:18.754 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:18.754 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:18.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:38:18.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:18.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:18.754 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:18.754 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:18.754 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:38:18.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:18.944 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:18.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28909 150' command took 2 ms to send, 1356 ms to get response, and 1362 ms overall
17-03-18 04:38:18.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:18.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131527177986366. ------
17-03-18 04:38:19.064 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13829 mm
17-03-18 04:38:19.064 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:19.064 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:19.064 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:38:19.064 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 04:38:19.064 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30210, sync = True, waitForSettling = False)
17-03-18 04:38:19.074 -07 000000474 INF: Z Motor: Moving to -0.138293 mm, started at -0.131527 mm, distance = -6.77 um
17-03-18 04:38:19.074 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:19.084 -07 000000474 INF: FPGA: Xmit ZDACW 30210\n [Z Motor]
17-03-18 04:38:19.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:38:19.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:38:19.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:19.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:38:19.154 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:38:19.154 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:19.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:19.164 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:38:19.164 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:38:19.164 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:38:19.174 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:19.174 -07 000000626 INF: FPGA: Recv YRDPOS 127787
17-03-18 04:38:19.174 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:38:19.174 -07 000000474 INF: FPGA: 'ZDACW 30210' command took 0 ms to send, 83 ms to get response, and 103 ms overall
17-03-18 04:38:19.174 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:19.174 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 103 ms to get response, and 106 ms overall
17-03-18 04:38:19.174 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 93 ms to get response, and 103 ms overall
17-03-18 04:38:19.174 -07 000000581 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:19.174 -07 000000579 INF: FPGA: Recv ZDACR 30210
17-03-18 04:38:19.174 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:19.174 -07 000000581 INF: Y Motor: Moving 1339 steps-15
17-03-18 04:38:19.184 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:19.184 -07 000000474 INF: Z Motor: MoveAbsStepped took 110 ms (did NOT wait for settling yet))
17-03-18 04:38:19.184 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:19.194 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:19.394 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:19.394 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 04:38:19.554 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:38:19.554 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 380 ms overall
17-03-18 04:38:19.604 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:19.614 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:38:19.614 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:19.614 -07 000000581 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:19.614 -07 000000581 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:38:19.614 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.837 mm, average velocity = 2.203 mm/sec
17-03-18 04:38:20.564 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:20.564 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:38:20.574 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.574 -07 000000581 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:20.604 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:20.604 -07 000000581 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:20.604 -07 000000581 INF: Y Motor: Moved to 63.2241 after 1532 ms (table move)
17-03-18 04:38:20.604 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138293 mm (DAC = 30210)
17-03-18 04:38:20.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.604 -07 000000626 INF: FPGA: Recv ZSGSRD 30819
17-03-18 04:38:20.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:20.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.614 -07 000000474 INF: FPGA: Recv ZSGSRD 30826
17-03-18 04:38:20.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.634 -07 000000581 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:38:20.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:38:20.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.644 -07 000000480 INF: FPGA: Recv ZSGSRD 30817
17-03-18 04:38:20.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.654 -07 000000581 INF: FPGA: Recv ZSGSRD 30811
17-03-18 04:38:20.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.664 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.664 -07 000000480 INF: FPGA: Recv ZSGSRD 30818
17-03-18 04:38:20.674 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.674 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.674 -07 000000579 INF: FPGA: Recv ZSGSRD 30814
17-03-18 04:38:20.684 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.684 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.684 -07 000000480 INF: FPGA: Recv ZSGSRD 30809
17-03-18 04:38:20.694 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.694 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.694 -07 000000474 INF: FPGA: Recv ZSGSRD 30821
17-03-18 04:38:20.704 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.704 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:20.704 -07 000000480 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:38:20.714 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.714 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:20.714 -07 000000474 INF: FPGA: Recv ZPIEZORD 26534
17-03-18 04:38:20.724 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:20.724 -07 000000447 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.4 V.
17-03-18 04:38:20.724 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30818 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30818 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30809 (-137.4 uncal um), Max = 30826 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:38:20.724 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30818, posNoise = 8, negNoise = 9
17-03-18 04:38:20.724 -07 000000447 INF: Z Motor: After move to -0.138293, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:20.724 -07 000000447 INF: Z Motor: Settle wait time = 1535 ms, measure time = 115 ms (allowed 150 ms), total time = 1650 ms
17-03-18 04:38:20.724 -07 000000447 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:20.764 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1693 ms
17-03-18 04:38:20.764 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:20.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:20.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:20.764 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:20.764 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:20.764 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:20.764 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:20.774 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:38:20.774 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:20.774 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:20.774 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:20.774 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:38:20.774 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:38:20.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:20.824 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:20.944 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.003063,
17-03-18 04:38:21.124 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:21.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:21.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:21.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:21.164 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:21.164 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:21.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:38:21.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:38:21.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:21.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:38:21.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:38:21.264 -07 000000626 INF: Autofocus start
17-03-18 04:38:21.264 -07 000000626 INF: MeasureProfile start
17-03-18 04:38:21.274 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:21.274 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:21.284 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:38:21.284 -07 000000626 INF: MeasureProfile done
17-03-18 04:38:21.284 -07 000000626 INF: X=13  Z correction [um]=0.03858674
17-03-18 04:38:21.284 -07 000000626 INF: Autofocus finished
17-03-18 04:38:21.304 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:21.504 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:21.504 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:38:21.504 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138304721795924. ----------
17-03-18 04:38:21.504 -07 000000610 INF: Cycle	127	Tile	5	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:21.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28731, sync = True, waitForSettling = True)
17-03-18 04:38:21.514 -07 000000610 INF: Z Motor: Moving to -0.131522 mm, started at -0.138305 mm, distance = 6.78 um
17-03-18 04:38:21.514 -07 000000610 INF: FPGA: Xmit ZDACW 28731\n [Z Motor]
17-03-18 04:38:21.514 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:38:21.524 -07 000000610 INF: FPGA: 'ZDACW 28731' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:21.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:21.524 -07 000000569 INF: FPGA: Recv ZDACR 28731
17-03-18 04:38:21.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:21.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.684 -07 000000626 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:38:21.684 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:21.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:21.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:21.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.694 -07 000000447 INF: FPGA: Recv ZSGSRD 29767
17-03-18 04:38:21.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.704 -07 000000626 INF: FPGA: Recv ZSGSRD 29756
17-03-18 04:38:21.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.714 -07 000000579 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:38:21.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.724 -07 000000626 INF: FPGA: Recv ZSGSRD 29765
17-03-18 04:38:21.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.734 -07 000000579 INF: FPGA: Recv ZSGSRD 29762
17-03-18 04:38:21.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.744 -07 000000626 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:38:21.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.754 -07 000000447 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:38:21.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.764 -07 000000608 INF: FPGA: Recv ZSGSRD 29764
17-03-18 04:38:21.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:21.774 -07 000000581 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:38:21.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:21.784 -07 000000626 INF: FPGA: Recv ZPIEZORD 25139
17-03-18 04:38:21.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:21.794 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -10.1 V.
17-03-18 04:38:21.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29763 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29763 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29756 (-130.7 uncal um), Max = 29767 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:38:21.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29763, posNoise = 4, negNoise = 7
17-03-18 04:38:21.794 -07 000000610 INF: Z Motor: After move to -0.131522, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:21.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:38:21.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:21.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:21.794 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:21.794 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:21.794 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:21.794 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:21.794 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:21.794 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:21.794 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:21.794 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:21.794 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:21.794 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:21.804 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:21.804 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:21.804 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:38:21.804 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:21.804 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:21.804 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:38:21.814 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:38:21.814 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:38:21.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28908 150\n [Camera]
17-03-18 04:38:22.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:22.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:22.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:22.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:22.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:22.464 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:22.464 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:22.474 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:22.474 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:22.474 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:22.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:22.624 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28908 808
17-03-18 04:38:22.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:22.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:38:22.874 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:38:22.874 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:22.874 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:38:22.874 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:38:22.874 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:22.874 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:22.874 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:22.874 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:38:22.884 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:38:22.984 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:22.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:22.984 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:22.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:22.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:22.984 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:22.994 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:22.994 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:38:22.994 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:22.994 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:38:23.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:38:23.174 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:23.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28908 150' command took 2 ms to send, 1354 ms to get response, and 1361 ms overall
17-03-18 04:38:23.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:23.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131527177986366. ------
17-03-18 04:38:23.294 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:23.294 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13764 mm
17-03-18 04:38:23.294 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:23.304 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30067, sync = True, waitForSettling = False)
17-03-18 04:38:23.304 -07 000000606 INF: Z Motor: Moving to -0.137638 mm, started at -0.131527 mm, distance = -6.11 um
17-03-18 04:38:23.304 -07 000000606 INF: FPGA: Xmit ZDACW 30067\n [Z Motor]
17-03-18 04:38:23.304 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:38:23.304 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 04:38:23.314 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:23.394 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:38:23.394 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:38:23.394 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:23.394 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:38:23.394 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:38:23.394 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:23.394 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:23.394 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:38:23.394 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:23.404 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:38:23.404 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:23.404 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:38:23.404 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 108 ms to get response, and 109 ms overall
17-03-18 04:38:23.404 -07 000000606 INF: FPGA: 'ZDACW 30067' command took 0 ms to send, 98 ms to get response, and 106 ms overall
17-03-18 04:38:23.404 -07 000000474 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:38:23.404 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 88 ms to get response, and 106 ms overall
17-03-18 04:38:23.414 -07 000000618 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:23.414 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:23.414 -07 000000618 INF: Y Motor: Moving 1342 steps-17
17-03-18 04:38:23.414 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:23.414 -07 000000474 INF: FPGA: Recv ZDACR 30067
17-03-18 04:38:23.424 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:23.424 -07 000000606 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:23.424 -07 000000606 INF: Z Motor: MoveAbsStepped took 118 ms (did NOT wait for settling yet))
17-03-18 04:38:23.434 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:23.634 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:23.634 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:38:23.794 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:38:23.794 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:38:23.844 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:23.844 -07 000000606 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:38:23.854 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:23.854 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:23.854 -07 000000618 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 04:38:23.854 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.172 mm/sec
17-03-18 04:38:24.804 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:24.804 -07 000000606 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:38:24.814 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:24.814 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:24.834 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:24.834 -07 000000618 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:24.834 -07 000000618 INF: Y Motor: Moved to 64.0571 after 1534 ms (table move)
17-03-18 04:38:24.844 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137638 mm (DAC = 30067)
17-03-18 04:38:24.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.844 -07 000000606 INF: FPGA: Recv ZSGSRD 30716
17-03-18 04:38:24.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.854 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.854 -07 000000606 INF: FPGA: Recv ZSGSRD 30718
17-03-18 04:38:24.864 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.864 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.864 -07 000000606 INF: FPGA: Recv ZSGSRD 30722
17-03-18 04:38:24.874 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.874 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.874 -07 000000581 INF: FPGA: Recv ZSGSRD 30722
17-03-18 04:38:24.884 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.884 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.884 -07 000000606 INF: FPGA: Recv ZSGSRD 30710
17-03-18 04:38:24.894 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.894 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.894 -07 000000618 INF: FPGA: Recv ZSGSRD 30721
17-03-18 04:38:24.904 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.904 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.904 -07 000000608 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:38:24.914 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.914 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.914 -07 000000581 INF: FPGA: Recv ZSGSRD 30713
17-03-18 04:38:24.924 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.924 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.924 -07 000000608 INF: FPGA: Recv ZSGSRD 30719
17-03-18 04:38:24.934 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.934 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:24.934 -07 000000608 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:38:24.944 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.944 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:24.944 -07 000000608 INF: FPGA: Recv ZPIEZORD 26481
17-03-18 04:38:24.954 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:24.954 -07 000000502 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.3 V.
17-03-18 04:38:24.954 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30716 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30717 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30710 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:38:24.954 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30716, posNoise = 6, negNoise = 6
17-03-18 04:38:24.954 -07 000000502 INF: Z Motor: After move to -0.137638, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:24.954 -07 000000502 INF: Z Motor: Settle wait time = 1538 ms, measure time = 110 ms (allowed 150 ms), total time = 1648 ms
17-03-18 04:38:24.954 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:24.994 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1691 ms
17-03-18 04:38:24.994 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:24.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:24.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:24.994 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:24.994 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:24.994 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:24.994 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:24.994 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:38:24.994 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:25.004 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:25.004 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:25.004 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:38:25.004 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:38:25.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:25.054 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:25.354 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:25.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:25.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:25.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:25.394 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:25.394 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:25.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:38:25.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:38:25.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:25.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:38:25.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 04:38:25.494 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:25.494 -07 000000502 INF: Autofocus start
17-03-18 04:38:25.494 -07 000000502 INF: MeasureProfile start
17-03-18 04:38:25.494 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:25.504 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:25.504 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:25.504 -07 000000502 INF: MeasureProfile done
17-03-18 04:38:25.504 -07 000000502 INF: X=48  Z correction [um]=0.2069503
17-03-18 04:38:25.504 -07 000000502 INF: Autofocus finished
17-03-18 04:38:25.704 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:25.704 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:25.704 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137649452157465. ----------
17-03-18 04:38:25.704 -07 000000610 INF: Cycle	127	Tile	6	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:25.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28625, sync = True, waitForSettling = True)
17-03-18 04:38:25.714 -07 000000610 INF: Z Motor: Moving to -0.131037 mm, started at -0.137649 mm, distance = 6.61 um
17-03-18 04:38:25.714 -07 000000610 INF: FPGA: Xmit ZDACW 28625\n [Z Motor]
17-03-18 04:38:25.714 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:38:25.724 -07 000000610 INF: FPGA: 'ZDACW 28625' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:25.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:25.724 -07 000000606 INF: FPGA: Recv ZDACR 28625
17-03-18 04:38:25.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:25.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.884 -07 000000618 INF: FPGA: Recv ZSGSRD 29688
17-03-18 04:38:25.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:25.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.894 -07 000000606 INF: FPGA: Recv ZSGSRD 29688
17-03-18 04:38:25.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29687
17-03-18 04:38:25.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.914 -07 000000502 INF: FPGA: Recv ZSGSRD 29688
17-03-18 04:38:25.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.924 -07 000000606 INF: FPGA: Recv ZSGSRD 29691
17-03-18 04:38:25.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.934 -07 000000618 INF: FPGA: Recv ZSGSRD 29684
17-03-18 04:38:25.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.944 -07 000000581 INF: FPGA: Recv ZSGSRD 29686
17-03-18 04:38:25.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.954 -07 000000606 INF: FPGA: Recv ZSGSRD 29689
17-03-18 04:38:25.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.964 -07 000000502 INF: FPGA: Recv ZSGSRD 29691
17-03-18 04:38:25.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:25.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29686
17-03-18 04:38:25.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:25.984 -07 000000581 INF: FPGA: Recv ZPIEZORD 25088
17-03-18 04:38:25.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:25.994 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -10.1 V.
17-03-18 04:38:25.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29684 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:38:25.994 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 3, negNoise = 4
17-03-18 04:38:25.994 -07 000000610 INF: Z Motor: After move to -0.131037, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:25.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:38:25.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:25.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:25.994 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:25.994 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:25.994 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:25.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:25.994 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:25.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:25.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:25.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:25.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:25.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:26.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:26.004 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:26.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:38:26.004 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:26.014 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:38:26.014 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:38:26.014 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:38:26.014 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:38:26.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28802 150\n [Camera]
17-03-18 04:38:26.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:26.314 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.007176,
17-03-18 04:38:26.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:26.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:26.644 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:26.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:26.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:26.644 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:26.654 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:26.654 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:26.654 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:26.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:26.684 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:26.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:26.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28802 808
17-03-18 04:38:26.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 959
17-03-18 04:38:27.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:38:27.024 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:38:27.024 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:27.034 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:27.034 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:38:27.044 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:38:27.044 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:38:27.044 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:27.044 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:27.044 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:38:27.194 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:27.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:27.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:27.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:27.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:27.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:27.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:27.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:38:27.194 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:27.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:38:27.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:27.384 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:27.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28802 150' command took 2 ms to send, 1352 ms to get response, and 1361 ms overall
17-03-18 04:38:27.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:27.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131045362075734. ------
17-03-18 04:38:27.394 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:27.394 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13753 mm
17-03-18 04:38:27.394 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:27.394 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:38:27.394 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30044, sync = True, waitForSettling = False)
17-03-18 04:38:27.394 -07 000000512 INF: Z Motor: Moving to -0.137533 mm, started at -0.131045 mm, distance = -6.49 um
17-03-18 04:38:27.394 -07 000000474 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 04:38:27.394 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:27.404 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:27.404 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:27.404 -07 000000625 INF: FPGA: Recv YRDPOS 131190
17-03-18 04:38:27.414 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:38:27.414 -07 000000474 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:27.414 -07 000000512 INF: FPGA: Xmit ZDACW 30044\n [Z Motor]
17-03-18 04:38:27.414 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:38:27.414 -07 000000474 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:27.414 -07 000000474 INF: Y Motor: Moving 1336 steps-11
17-03-18 04:38:27.424 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:27.424 -07 000000512 INF: FPGA: 'ZDACW 30044' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:38:27.434 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:27.444 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:27.444 -07 000000590 INF: FPGA: Recv ZDACR 30044
17-03-18 04:38:27.454 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:27.454 -07 000000512 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 04:38:27.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:38:27.594 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:38:27.594 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:27.594 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:38:27.594 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:38:27.594 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:27.604 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:27.604 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:38:27.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:27.604 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:38:27.624 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:27.624 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:38:27.804 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:38:27.804 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:38:27.854 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:27.854 -07 000000625 INF: FPGA: Recv YRDPOS 132872
17-03-18 04:38:27.864 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:27.864 -07 000000474 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:27.864 -07 000000474 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:38:27.864 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.835 mm, average velocity = 2.131 mm/sec
17-03-18 04:38:28.814 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:28.814 -07 000000424 INF: FPGA: Recv YRDPOS 132873
17-03-18 04:38:28.824 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:28.824 -07 000000474 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:28.854 -07 000000474 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:28.854 -07 000000474 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:38:28.854 -07 000000474 INF: Y Motor: Moved to 64.8794 after 1457 ms (table move)
17-03-18 04:38:28.854 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137533 mm (DAC = 30044)
17-03-18 04:38:28.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.854 -07 000000625 INF: FPGA: Recv ZSGSRD 30699
17-03-18 04:38:28.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:28.864 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.864 -07 000000474 INF: FPGA: Recv ZSGSRD 30696
17-03-18 04:38:28.874 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.874 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.874 -07 000000590 INF: FPGA: Recv ZSGSRD 30705
17-03-18 04:38:28.884 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.884 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.884 -07 000000590 INF: FPGA: Recv ZSGSRD 30703
17-03-18 04:38:28.894 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.894 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.894 -07 000000590 INF: FPGA: Recv ZSGSRD 30699
17-03-18 04:38:28.904 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.904 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.904 -07 000000590 INF: FPGA: Recv ZSGSRD 30703
17-03-18 04:38:28.914 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.914 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.914 -07 000000502 INF: FPGA: Recv ZSGSRD 30696
17-03-18 04:38:28.924 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.924 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.924 -07 000000625 INF: FPGA: Recv ZSGSRD 30691
17-03-18 04:38:28.934 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.934 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.934 -07 000000502 INF: FPGA: Recv ZSGSRD 30694
17-03-18 04:38:28.944 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.944 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:28.944 -07 000000424 INF: FPGA: Recv ZSGSRD 30704
17-03-18 04:38:28.954 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.954 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:28.954 -07 000000590 INF: FPGA: Recv ZPIEZORD 26478
17-03-18 04:38:28.964 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:28.964 -07 000000591 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.3 V.
17-03-18 04:38:28.964 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30699 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30699 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30691 (-136.7 uncal um), Max = 30705 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:38:28.964 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30699, posNoise = 6, negNoise = 8
17-03-18 04:38:28.964 -07 000000591 INF: Z Motor: After move to -0.137533, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:28.964 -07 000000591 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 04:38:28.964 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:29.014 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:38:29.014 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:29.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:29.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:29.024 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:29.024 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:29.024 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:29.024 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:29.024 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:29.024 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:29.024 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:29.024 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:29.034 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:38:29.034 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:38:29.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:29.084 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:29.384 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:29.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:29.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:29.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:38:29.424 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:29.424 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:29.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 04:38:29.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:38:29.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:29.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:29.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:38:29.524 -07 000000591 INF: Autofocus start
17-03-18 04:38:29.524 -07 000000591 INF: MeasureProfile start
17-03-18 04:38:29.524 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:29.524 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:29.534 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:29.534 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:29.534 -07 000000591 INF: MeasureProfile done
17-03-18 04:38:29.534 -07 000000591 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:38:29.534 -07 000000591 INF: Autofocus finished
17-03-18 04:38:29.734 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:29.734 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:38:29.734 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.137540240551055. ----------
17-03-18 04:38:29.734 -07 000000610 INF: Cycle	127	Tile	7	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:29.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28585, sync = True, waitForSettling = True)
17-03-18 04:38:29.744 -07 000000610 INF: Z Motor: Moving to -0.130854 mm, started at -0.137540 mm, distance = 6.69 um
17-03-18 04:38:29.744 -07 000000610 INF: FPGA: Xmit ZDACW 28585\n [Z Motor]
17-03-18 04:38:29.744 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:38:29.754 -07 000000610 INF: FPGA: 'ZDACW 28585' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:29.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:29.754 -07 000000625 INF: FPGA: Recv ZDACR 28585
17-03-18 04:38:29.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:29.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:38:29.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:29.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.924 -07 000000625 INF: FPGA: Recv ZSGSRD 29663
17-03-18 04:38:29.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29652
17-03-18 04:38:29.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.944 -07 000000590 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:38:29.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:38:29.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.964 -07 000000591 INF: FPGA: Recv ZSGSRD 29664
17-03-18 04:38:29.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.974 -07 000000424 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:38:29.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.984 -07 000000502 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:38:29.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:29.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:29.994 -07 000000474 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:38:30.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:30.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:30.004 -07 000000502 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:38:30.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:30.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:30.014 -07 000000474 INF: FPGA: Recv ZPIEZORD 25109
17-03-18 04:38:30.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:30.024 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.0 V.
17-03-18 04:38:30.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29658 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29658 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29652 (-130.0 uncal um), Max = 29664 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:38:30.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29658, posNoise = 6, negNoise = 6
17-03-18 04:38:30.024 -07 000000610 INF: Z Motor: After move to -0.130854, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:30.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:38:30.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:30.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:30.024 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:30.024 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:30.024 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:30.024 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:30.024 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:30.024 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:30.024 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:30.024 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:38:30.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:30.024 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:30.034 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:30.034 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:30.034 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:38:30.034 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:30.044 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:38:30.044 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:38:30.044 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:38:30.044 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:38:30.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28762 150\n [Camera]
17-03-18 04:38:30.244 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:30.664 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:30.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:30.664 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:30.664 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:30.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:38:30.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:30.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:30.664 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:30.664 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:30.664 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:38:30.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28762 808
17-03-18 04:38:31.004 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:31.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:38:31.064 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:38:31.064 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:31.064 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:31.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:38:31.074 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:38:31.074 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:38:31.074 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:31.074 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:31.084 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:38:31.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:31.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:31.214 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:31.214 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:31.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:38:31.214 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:31.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:31.214 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:31.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:31.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:38:31.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:31.404 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:31.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28762 150' command took 4 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-18 04:38:31.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:31.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.130852635711481. ------
17-03-18 04:38:31.524 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13756 mm
17-03-18 04:38:31.524 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:31.524 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:31.524 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:31.524 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:38:31.524 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-18 04:38:31.524 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30050, sync = True, waitForSettling = False)
17-03-18 04:38:31.524 -07 000000424 INF: Z Motor: Moving to -0.137560 mm, started at -0.130853 mm, distance = -6.71 um
17-03-18 04:38:31.534 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:31.534 -07 000000424 INF: FPGA: Xmit ZDACW 30050\n [Z Motor]
17-03-18 04:38:31.534 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:38:31.544 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:31.544 -07 000000424 INF: FPGA: 'ZDACW 30050' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:38:31.544 -07 000000447 INF: FPGA: Recv YRDPOS 132873
17-03-18 04:38:31.554 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:31.554 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:38:31.554 -07 000000480 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:31.554 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:31.554 -07 000000480 INF: Y Motor: Moving 1349 steps-28
17-03-18 04:38:31.564 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:31.564 -07 000000382 INF: FPGA: Recv ZDACR 30050
17-03-18 04:38:31.574 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:31.574 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:31.574 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:38:31.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:38:31.604 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:38:31.604 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:31.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:38:31.604 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:38:31.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:31.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:31.614 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:38:31.614 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:38:31.614 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:38:31.684 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.001704,
17-03-18 04:38:31.694 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:31.754 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:31.754 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:38:31.944 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:38:31.944 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:38:32.014 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:32.014 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:38:32.024 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:38:32.024 -07 000000480 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:32.024 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:38:32.024 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-18 04:38:32.974 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:32.974 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-18 04:38:32.984 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:32.984 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:33.014 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:33.014 -07 000000480 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:38:33.014 -07 000000480 INF: Y Motor: Moved to 65.7144 after 1486 ms (table move)
17-03-18 04:38:33.014 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137560 mm (DAC = 30050)
17-03-18 04:38:33.014 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.014 -07 000000502 INF: FPGA: Recv ZSGSRD 30704
17-03-18 04:38:33.024 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:33.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.024 -07 000000626 INF: FPGA: Recv ZSGSRD 30702
17-03-18 04:38:33.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.034 -07 000000625 INF: FPGA: Recv ZSGSRD 30703
17-03-18 04:38:33.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.044 -07 000000424 INF: FPGA: Recv ZSGSRD 30701
17-03-18 04:38:33.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.054 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.054 -07 000000625 INF: FPGA: Recv ZSGSRD 30694
17-03-18 04:38:33.064 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.064 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.064 -07 000000424 INF: FPGA: Recv ZSGSRD 30704
17-03-18 04:38:33.074 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.074 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.074 -07 000000625 INF: FPGA: Recv ZSGSRD 30707
17-03-18 04:38:33.084 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.084 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.084 -07 000000625 INF: FPGA: Recv ZSGSRD 30707
17-03-18 04:38:33.094 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.094 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.094 -07 000000590 INF: FPGA: Recv ZSGSRD 30696
17-03-18 04:38:33.104 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.104 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:33.104 -07 000000424 INF: FPGA: Recv ZSGSRD 30702
17-03-18 04:38:33.114 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.114 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:33.114 -07 000000625 INF: FPGA: Recv ZPIEZORD 26489
17-03-18 04:38:33.124 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.124 -07 000000591 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.585 V. Piezo Error = -9.3 V.
17-03-18 04:38:33.124 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30702 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30702 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30694 (-136.7 uncal um), Max = 30707 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:38:33.124 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30702, posNoise = 5, negNoise = 8
17-03-18 04:38:33.124 -07 000000591 INF: Z Motor: After move to -0.137560, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:33.124 -07 000000591 INF: Z Motor: Settle wait time = 1489 ms, measure time = 104 ms (allowed 150 ms), total time = 1593 ms
17-03-18 04:38:33.124 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:33.174 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 04:38:33.174 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:33.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:33.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:33.174 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:33.174 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:33.174 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:33.174 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:33.174 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:33.174 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:33.184 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:38:33.184 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:33.194 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:38:33.194 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 04:38:33.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:33.244 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:33.544 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:33.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:33.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:33.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:33.584 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:33.584 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:33.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:38:33.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:38:33.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:33.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:33.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:38:33.684 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:33.684 -07 000000382 INF: Autofocus start
17-03-18 04:38:33.684 -07 000000382 INF: MeasureProfile start
17-03-18 04:38:33.694 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:33.694 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 8 ms overall
17-03-18 04:38:33.694 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:33.704 -07 000000382 INF: MeasureProfile done
17-03-18 04:38:33.704 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:38:33.704 -07 000000382 INF: Autofocus finished
17-03-18 04:38:33.894 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:33.894 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:38:33.894 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.13755951318748. ----------
17-03-18 04:38:33.904 -07 000000610 INF: Cycle	127	Tile	8	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:33.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28557, sync = True, waitForSettling = True)
17-03-18 04:38:33.904 -07 000000610 INF: Z Motor: Moving to -0.130726 mm, started at -0.137560 mm, distance = 6.83 um
17-03-18 04:38:33.904 -07 000000610 INF: FPGA: Xmit ZDACW 28557\n [Z Motor]
17-03-18 04:38:33.904 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:38:33.914 -07 000000610 INF: FPGA: 'ZDACW 28557' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:33.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:33.914 -07 000000590 INF: FPGA: Recv ZDACR 28557
17-03-18 04:38:33.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:33.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:34.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.074 -07 000000625 INF: FPGA: Recv ZSGSRD 29637
17-03-18 04:38:34.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.084 -07 000000502 INF: FPGA: Recv ZSGSRD 29640
17-03-18 04:38:34.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.094 -07 000000382 INF: FPGA: Recv ZSGSRD 29636
17-03-18 04:38:34.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.104 -07 000000502 INF: FPGA: Recv ZSGSRD 29635
17-03-18 04:38:34.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.114 -07 000000625 INF: FPGA: Recv ZSGSRD 29643
17-03-18 04:38:34.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29644
17-03-18 04:38:34.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.134 -07 000000590 INF: FPGA: Recv ZSGSRD 29635
17-03-18 04:38:34.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.144 -07 000000424 INF: FPGA: Recv ZSGSRD 29639
17-03-18 04:38:34.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.154 -07 000000625 INF: FPGA: Recv ZSGSRD 29635
17-03-18 04:38:34.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:34.164 -07 000000424 INF: FPGA: Recv ZSGSRD 29639
17-03-18 04:38:34.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:34.174 -07 000000424 INF: FPGA: Recv ZPIEZORD 25065
17-03-18 04:38:34.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:34.184 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -10.0 V.
17-03-18 04:38:34.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29638 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29638 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29644 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:38:34.184 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29638, posNoise = 6, negNoise = 3
17-03-18 04:38:34.184 -07 000000610 INF: Z Motor: After move to -0.130726, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:34.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:38:34.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:34.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:34.184 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:34.184 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:34.184 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:34.184 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:34.184 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:34.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:34.184 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:34.184 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:34.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:34.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:34.184 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:34.194 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:34.194 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:38:34.194 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:34.204 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:38:34.204 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:38:34.204 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:38:34.204 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:38:34.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28734 150\n [Camera]
17-03-18 04:38:34.404 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:34.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:34.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:34.834 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:34.834 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:34.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:34.834 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:34.844 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:34.844 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:34.844 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:34.844 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:35.024 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28734 808
17-03-18 04:38:35.174 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:35.224 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:38:35.224 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:38:35.224 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:35.224 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:38:35.224 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:38:35.224 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:35.224 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:35.224 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:38:35.234 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:35.234 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:38:35.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:35.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:35.384 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:35.384 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:35.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:35.384 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:35.384 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:35.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:38:35.384 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:35.504 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:38:35.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:38:35.574 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:35.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28734 150' command took 2 ms to send, 1350 ms to get response, and 1360 ms overall
17-03-18 04:38:35.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:35.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130724151468646. ------
17-03-18 04:38:35.574 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:35.574 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13727 mm
17-03-18 04:38:35.574 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:35.574 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:35.574 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:38:35.574 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 04:38:35.584 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:38:35.584 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:35.584 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29987, sync = True, waitForSettling = False)
17-03-18 04:38:35.584 -07 000000606 INF: Z Motor: Moving to -0.137272 mm, started at -0.130724 mm, distance = -6.55 um
17-03-18 04:38:35.584 -07 000000625 INF: FPGA: Recv YRDPOS 134583
17-03-18 04:38:35.594 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:35.594 -07 000000382 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:35.594 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:35.594 -07 000000382 INF: Y Motor: Moving 1341 steps-18
17-03-18 04:38:35.594 -07 000000606 INF: FPGA: Xmit ZDACW 29987\n [Z Motor]
17-03-18 04:38:35.594 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:38:35.604 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:35.604 -07 000000606 INF: FPGA: 'ZDACW 29987' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:38:35.614 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:35.624 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:35.624 -07 000000618 INF: FPGA: Recv ZDACR 29987
17-03-18 04:38:35.634 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:35.634 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:38:35.774 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:38:35.774 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:38:35.774 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:35.784 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:38:35.784 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:38:35.804 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:35.804 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:38:35.884 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:38:35.884 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 04:38:35.884 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:35.894 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:35.894 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 04:38:35.994 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:38:35.994 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 04:38:36.034 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:36.044 -07 000000581 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:38:36.044 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:38:36.044 -07 000000382 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:36.044 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:38:36.044 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-18 04:38:36.694 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:36.994 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:36.994 -07 000000581 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:38:37.004 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.004 -07 000000382 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:37.034 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:37.034 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:37.034 -07 000000382 INF: Y Motor: Moved to 66.5391 after 1453 ms (table move)
17-03-18 04:38:37.034 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137272 mm (DAC = 29987)
17-03-18 04:38:37.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.034 -07 000000581 INF: FPGA: Recv ZSGSRD 30659
17-03-18 04:38:37.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:37.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.044 -07 000000606 INF: FPGA: Recv ZSGSRD 30654
17-03-18 04:38:37.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:37.074 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.074 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.99219,
17-03-18 04:38:37.074 -07 000000581 INF: FPGA: Recv ZSGSRD 30660
17-03-18 04:38:37.084 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:37.094 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.094 -07 000000382 INF: FPGA: Recv ZSGSRD 30652
17-03-18 04:38:37.104 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:38:37.104 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.104 -07 000000382 INF: FPGA: Recv ZSGSRD 30657
17-03-18 04:38:37.114 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.124 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.124 -07 000000569 INF: FPGA: Recv ZSGSRD 30659
17-03-18 04:38:37.134 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:38:37.134 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.134 -07 000000569 INF: FPGA: Recv ZSGSRD 30654
17-03-18 04:38:37.144 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.164 -07 000000424 INF: FPGA: Recv ZSGSRD 30659
17-03-18 04:38:37.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:37.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.174 -07 000000424 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:38:37.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:37.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30653
17-03-18 04:38:37.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.194 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:37.194 -07 000000424 INF: FPGA: Recv ZPIEZORD 26437
17-03-18 04:38:37.204 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.204 -07 000000591 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.3 V.
17-03-18 04:38:37.204 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30656 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30651 (-136.4 uncal um), Max = 30660 (-136.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:38:37.204 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30656, posNoise = 4, negNoise = 5
17-03-18 04:38:37.204 -07 000000591 INF: Z Motor: After move to -0.137272, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:37.204 -07 000000591 INF: Z Motor: Settle wait time = 1455 ms, measure time = 164 ms (allowed 150 ms), total time = 1619 ms
17-03-18 04:38:37.204 -07 000000591 INF: Z Motor: Warning: Actual position measuring time = 164 ms, longer than max expected time of 150 ms
17-03-18 04:38:37.204 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:38:37.204 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:37.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:37.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:37.204 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:37.204 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:37.204 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:37.204 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:37.214 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:37.214 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:37.214 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:37.214 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:37.224 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:38:37.224 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:38:37.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:37.264 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:37.564 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:37.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:37.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:37.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:37.604 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:37.604 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:37.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:38:37.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:38:37.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:37.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:37.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:38:37.704 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:37.704 -07 000000590 INF: Autofocus start
17-03-18 04:38:37.704 -07 000000590 INF: MeasureProfile start
17-03-18 04:38:37.704 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:37.714 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:38:37.714 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:37.714 -07 000000590 INF: MeasureProfile done
17-03-18 04:38:37.714 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:38:37.714 -07 000000590 INF: Autofocus finished
17-03-18 04:38:37.914 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:37.914 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:37.914 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137263999428959. ----------
17-03-18 04:38:37.924 -07 000000610 INF: Cycle	127	Tile	9	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:37.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28482, sync = True, waitForSettling = True)
17-03-18 04:38:37.924 -07 000000610 INF: Z Motor: Moving to -0.130382 mm, started at -0.137264 mm, distance = 6.88 um
17-03-18 04:38:37.924 -07 000000610 INF: FPGA: Xmit ZDACW 28482\n [Z Motor]
17-03-18 04:38:37.924 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:38:37.934 -07 000000610 INF: FPGA: 'ZDACW 28482' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:37.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:37.934 -07 000000590 INF: FPGA: Recv ZDACR 28482
17-03-18 04:38:37.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:37.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:38.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.094 -07 000000606 INF: FPGA: Recv ZSGSRD 29583
17-03-18 04:38:38.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:38.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.104 -07 000000591 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:38:38.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29584
17-03-18 04:38:38.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.124 -07 000000591 INF: FPGA: Recv ZSGSRD 29583
17-03-18 04:38:38.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.134 -07 000000581 INF: FPGA: Recv ZSGSRD 29588
17-03-18 04:38:38.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:38:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.154 -07 000000581 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:38:38.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.164 -07 000000591 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:38:38.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.174 -07 000000581 INF: FPGA: Recv ZSGSRD 29585
17-03-18 04:38:38.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:38.184 -07 000000591 INF: FPGA: Recv ZSGSRD 29584
17-03-18 04:38:38.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:38.194 -07 000000501 INF: FPGA: Recv ZPIEZORD 25027
17-03-18 04:38:38.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:38.204 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -10.0 V.
17-03-18 04:38:38.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29585 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29584 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29581 (-129.6 uncal um), Max = 29592 (-129.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:38:38.204 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29585, posNoise = 7, negNoise = 4
17-03-18 04:38:38.204 -07 000000610 INF: Z Motor: After move to -0.130382, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:38.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:38:38.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:38.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:38.204 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:38.204 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:38.204 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:38.204 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:38.204 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:38.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:38.204 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:38.204 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:38.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:38.204 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:38.214 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:38:38.214 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:38.214 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:38.214 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:38.224 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:38:38.224 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:38:38.224 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:38.224 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:38:38.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28659 150\n [Camera]
17-03-18 04:38:38.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:38.844 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:38.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:38.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:38.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:38.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:38.854 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:38.854 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:38.854 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:38.854 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:38.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:39.044 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28659 808
17-03-18 04:38:39.194 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:38:39.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:38:39.254 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:38:39.254 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:39.254 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:38:39.254 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:38:39.254 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:39.254 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:39.254 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:38:39.254 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:39.264 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:38:39.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:39.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:39.394 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:39.394 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:39.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:39.404 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:39.404 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:39.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:38:39.404 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:39.404 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:38:39.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:38:39.584 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:39.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28659 150' command took 2 ms to send, 1355 ms to get response, and 1361 ms overall
17-03-18 04:38:39.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:39.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130383668225133. ------
17-03-18 04:38:39.594 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:39.594 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13718 mm
17-03-18 04:38:39.594 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:39.594 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:39.594 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:38:39.594 -07 000000591 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 04:38:39.594 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29966, sync = True, waitForSettling = False)
17-03-18 04:38:39.594 -07 000000501 INF: Z Motor: Moving to -0.137176 mm, started at -0.130384 mm, distance = -6.79 um
17-03-18 04:38:39.604 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:39.604 -07 000000501 INF: FPGA: Xmit ZDACW 29966\n [Z Motor]
17-03-18 04:38:39.604 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:38:39.614 -07 000000501 INF: FPGA: 'ZDACW 29966' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:38:39.614 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:39.614 -07 000000512 INF: FPGA: Recv YRDPOS 136273
17-03-18 04:38:39.624 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:39.624 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:38:39.624 -07 000000591 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:39.624 -07 000000591 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:39.624 -07 000000591 INF: Y Motor: Moving 1349 steps-28
17-03-18 04:38:39.634 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:39.634 -07 000000579 INF: FPGA: Recv ZDACR 29966
17-03-18 04:38:39.644 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:39.644 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:39.644 -07 000000501 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:38:39.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:38:39.794 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:38:39.794 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:39.804 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:39.804 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:38:39.804 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:38:39.804 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:38:39.804 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:39.804 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:39.814 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:38:39.824 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:39.824 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:38:40.014 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:38:40.014 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:38:40.064 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:40.064 -07 000000480 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:38:40.074 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:40.074 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:40.074 -07 000000591 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:38:40.074 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-18 04:38:41.024 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:41.024 -07 000000606 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:38:41.034 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.034 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:41.064 -07 000000591 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:41.064 -07 000000591 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:41.064 -07 000000591 INF: Y Motor: Moved to 67.3716 after 1464 ms (table move)
17-03-18 04:38:41.064 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137176 mm (DAC = 29966)
17-03-18 04:38:41.064 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.064 -07 000000579 INF: FPGA: Recv ZSGSRD 30647
17-03-18 04:38:41.074 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:41.074 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.074 -07 000000579 INF: FPGA: Recv ZSGSRD 30646
17-03-18 04:38:41.084 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.084 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.084 -07 000000591 INF: FPGA: Recv ZSGSRD 30635
17-03-18 04:38:41.094 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.094 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.094 -07 000000591 INF: FPGA: Recv ZSGSRD 30641
17-03-18 04:38:41.104 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.104 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.104 -07 000000502 INF: FPGA: Recv ZSGSRD 30652
17-03-18 04:38:41.114 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.114 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.114 -07 000000626 INF: FPGA: Recv ZSGSRD 30638
17-03-18 04:38:41.124 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.124 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.124 -07 000000606 INF: FPGA: Recv ZSGSRD 30643
17-03-18 04:38:41.134 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.134 -07 000000606 INF: FPGA: Recv ZSGSRD 30639
17-03-18 04:38:41.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.144 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.144 -07 000000626 INF: FPGA: Recv ZSGSRD 30643
17-03-18 04:38:41.154 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.154 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:41.154 -07 000000502 INF: FPGA: Recv ZSGSRD 30645
17-03-18 04:38:41.164 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.164 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:41.164 -07 000000480 INF: FPGA: Recv ZPIEZORD 26418
17-03-18 04:38:41.174 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.174 -07 000000581 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.3 V.
17-03-18 04:38:41.174 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30643 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30643 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30635 (-136.3 uncal um), Max = 30652 (-136.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:38:41.174 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30643, posNoise = 9, negNoise = 8
17-03-18 04:38:41.174 -07 000000581 INF: Z Motor: After move to -0.137176, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:41.174 -07 000000581 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:38:41.174 -07 000000581 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:41.224 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:38:41.224 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:41.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:41.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:41.224 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:41.224 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:41.224 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:41.224 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:41.224 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:41.224 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:41.234 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:41.234 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:41.244 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:38:41.244 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:38:41.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:41.294 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:41.594 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:41.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:41.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:41.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:38:41.634 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:41.634 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:41.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 04:38:41.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:41.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:38:41.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:41.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:41.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:38:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:41.734 -07 000000501 INF: Autofocus start
17-03-18 04:38:41.734 -07 000000501 INF: MeasureProfile start
17-03-18 04:38:41.734 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:41.734 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:41.744 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:41.744 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:41.744 -07 000000501 INF: MeasureProfile done
17-03-18 04:38:41.744 -07 000000501 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 04:38:41.744 -07 000000501 INF: Autofocus finished
17-03-18 04:38:41.944 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:41.944 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:38:41.944 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137180484671116. ----------
17-03-18 04:38:41.954 -07 000000610 INF: Cycle	127	Tile	10	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:41.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28376, sync = True, waitForSettling = True)
17-03-18 04:38:41.954 -07 000000610 INF: Z Motor: Moving to -0.129897 mm, started at -0.137180 mm, distance = 7.28 um
17-03-18 04:38:41.954 -07 000000610 INF: FPGA: Xmit ZDACW 28376\n [Z Motor]
17-03-18 04:38:41.954 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:38:41.964 -07 000000610 INF: FPGA: 'ZDACW 28376' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:41.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:41.964 -07 000000480 INF: FPGA: Recv ZDACR 28376
17-03-18 04:38:41.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:41.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:42.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.124 -07 000000626 INF: FPGA: Recv ZSGSRD 29515
17-03-18 04:38:42.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:42.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.134 -07 000000480 INF: FPGA: Recv ZSGSRD 29507
17-03-18 04:38:42.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.144 -07 000000501 INF: FPGA: Recv ZSGSRD 29506
17-03-18 04:38:42.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.154 -07 000000480 INF: FPGA: Recv ZSGSRD 29508
17-03-18 04:38:42.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.174 -07 000000474 INF: FPGA: Recv ZSGSRD 29508
17-03-18 04:38:42.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:38:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.184 -07 000000447 INF: FPGA: Recv ZSGSRD 29502
17-03-18 04:38:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.194 -07 000000581 INF: FPGA: Recv ZSGSRD 29511
17-03-18 04:38:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.204 -07 000000579 INF: FPGA: Recv ZSGSRD 29510
17-03-18 04:38:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.214 -07 000000474 INF: FPGA: Recv ZSGSRD 29508
17-03-18 04:38:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:42.224 -07 000000447 INF: FPGA: Recv ZSGSRD 29512
17-03-18 04:38:42.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:42.234 -07 000000581 INF: FPGA: Recv ZPIEZORD 24952
17-03-18 04:38:42.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:42.244 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -10.0 V.
17-03-18 04:38:42.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29509 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29502 (-129.1 uncal um), Max = 29515 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:38:42.244 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29509, posNoise = 6, negNoise = 7
17-03-18 04:38:42.244 -07 000000610 INF: Z Motor: After move to -0.129897, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:42.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:38:42.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:42.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:42.244 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:42.244 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:42.244 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:42.244 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:42.244 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:42.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:42.244 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:42.244 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:42.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:42.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:42.254 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:42.254 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:42.254 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:38:42.254 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:42.264 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:42.264 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:38:42.264 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:38:42.264 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:38:42.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28553 150\n [Camera]
17-03-18 04:38:42.464 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:42.484 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.000345,
17-03-18 04:38:42.884 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:42.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:42.884 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:42.884 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:42.884 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:38:42.884 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:42.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:42.884 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:42.884 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:42.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:38:43.074 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28553 808
17-03-18 04:38:43.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:43.264 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:38:43.264 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:38:43.264 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:43.264 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:38:43.264 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:38:43.264 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:43.274 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:43.274 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:38:43.274 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:43.274 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:38:43.434 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:43.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:43.434 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:43.434 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:43.434 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:38:43.434 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:43.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:43.434 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:43.434 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:43.434 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:38:43.624 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:43.624 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:43.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28553 150' command took 2 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-18 04:38:43.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:43.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.129895428102359. ------
17-03-18 04:38:43.744 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13629 mm
17-03-18 04:38:43.744 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:43.744 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:43.744 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29772, sync = True, waitForSettling = False)
17-03-18 04:38:43.744 -07 000000512 INF: Z Motor: Moving to -0.136287 mm, started at -0.129895 mm, distance = -6.39 um
17-03-18 04:38:43.744 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:38:43.744 -07 000000447 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 04:38:43.744 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:43.754 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:43.754 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:43.754 -07 000000606 INF: FPGA: Recv YRDPOS 137978
17-03-18 04:38:43.764 -07 000000512 INF: FPGA: Xmit ZDACW 29772\n [Z Motor]
17-03-18 04:38:43.764 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:38:43.764 -07 000000447 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:43.764 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:38:43.764 -07 000000447 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:43.764 -07 000000447 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:38:43.774 -07 000000512 INF: FPGA: 'ZDACW 29772' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:38:43.774 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:43.784 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:43.794 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:43.794 -07 000000606 INF: FPGA: Recv ZDACR 29772
17-03-18 04:38:43.804 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:43.804 -07 000000512 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:38:43.814 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:38:43.814 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:38:43.814 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:43.824 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:43.824 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:38:43.824 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:38:43.824 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:43.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:38:43.824 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:38:43.824 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:38:43.974 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:43.974 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:38:44.154 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:38:44.154 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:38:44.204 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:44.204 -07 000000606 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:38:44.214 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:44.214 -07 000000447 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:44.214 -07 000000447 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 04:38:44.214 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.140 mm/sec
17-03-18 04:38:45.164 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:45.164 -07 000000579 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:38:45.174 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:45.174 -07 000000447 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:45.194 -07 000000447 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:45.194 -07 000000447 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:45.194 -07 000000447 INF: Y Motor: Moved to 68.2051 after 1454 ms (table move)
17-03-18 04:38:45.204 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136287 mm (DAC = 29772)
17-03-18 04:38:45.204 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.204 -07 000000512 INF: FPGA: Recv ZSGSRD 30504
17-03-18 04:38:45.214 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:45.214 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.214 -07 000000591 INF: FPGA: Recv ZSGSRD 30507
17-03-18 04:38:45.224 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.224 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.224 -07 000000606 INF: FPGA: Recv ZSGSRD 30505
17-03-18 04:38:45.234 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.234 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.234 -07 000000591 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:38:45.244 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.244 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.244 -07 000000512 INF: FPGA: Recv ZSGSRD 30507
17-03-18 04:38:45.254 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.254 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.254 -07 000000579 INF: FPGA: Recv ZSGSRD 30504
17-03-18 04:38:45.264 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.264 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.264 -07 000000591 INF: FPGA: Recv ZSGSRD 30497
17-03-18 04:38:45.274 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.274 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.274 -07 000000512 INF: FPGA: Recv ZSGSRD 30505
17-03-18 04:38:45.284 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.284 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.284 -07 000000579 INF: FPGA: Recv ZSGSRD 30503
17-03-18 04:38:45.294 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.294 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:45.294 -07 000000512 INF: FPGA: Recv ZSGSRD 30511
17-03-18 04:38:45.304 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.304 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:45.304 -07 000000424 INF: FPGA: Recv ZPIEZORD 26239
17-03-18 04:38:45.314 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:45.314 -07 000000502 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.4 V.
17-03-18 04:38:45.314 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30505 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30505 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30497 (-135.4 uncal um), Max = 30511 (-135.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:38:45.314 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30505, posNoise = 6, negNoise = 8
17-03-18 04:38:45.314 -07 000000502 INF: Z Motor: After move to -0.136287, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:45.314 -07 000000502 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:38:45.314 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:45.364 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 04:38:45.364 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:45.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:45.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:45.364 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:45.364 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:45.364 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:45.364 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:45.364 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:45.364 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:45.374 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:45.374 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:45.384 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:38:45.384 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:38:45.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:45.434 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:45.734 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:45.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:45.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:45.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:45.774 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:45.774 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:45.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 04:38:45.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 04:38:45.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:45.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:45.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 04:38:45.874 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:45.874 -07 000000579 INF: Autofocus start
17-03-18 04:38:45.874 -07 000000579 INF: MeasureProfile start
17-03-18 04:38:45.874 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:45.884 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:45.884 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:45.894 -07 000000579 INF: MeasureProfile done
17-03-18 04:38:45.894 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:38:45.894 -07 000000579 INF: Autofocus finished
17-03-18 04:38:46.084 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:46.084 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:46.084 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136293943395553. ----------
17-03-18 04:38:46.094 -07 000000610 INF: Cycle	127	Tile	11	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:46.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = True)
17-03-18 04:38:46.094 -07 000000610 INF: Z Motor: Moving to -0.129453 mm, started at -0.136294 mm, distance = 6.84 um
17-03-18 04:38:46.094 -07 000000610 INF: FPGA: Xmit ZDACW 28279\n [Z Motor]
17-03-18 04:38:46.094 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:38:46.104 -07 000000610 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:46.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:46.104 -07 000000447 INF: FPGA: Recv ZDACR 28279
17-03-18 04:38:46.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:46.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29439
17-03-18 04:38:46.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:46.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.274 -07 000000579 INF: FPGA: Recv ZSGSRD 29441
17-03-18 04:38:46.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.284 -07 000000480 INF: FPGA: Recv ZSGSRD 29444
17-03-18 04:38:46.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.294 -07 000000591 INF: FPGA: Recv ZSGSRD 29435
17-03-18 04:38:46.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.304 -07 000000502 INF: FPGA: Recv ZSGSRD 29440
17-03-18 04:38:46.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.314 -07 000000591 INF: FPGA: Recv ZSGSRD 29444
17-03-18 04:38:46.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.324 -07 000000512 INF: FPGA: Recv ZSGSRD 29447
17-03-18 04:38:46.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.334 -07 000000424 INF: FPGA: Recv ZSGSRD 29439
17-03-18 04:38:46.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:46.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.344 -07 000000591 INF: FPGA: Recv ZSGSRD 29440
17-03-18 04:38:46.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:38:46.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:46.354 -07 000000447 INF: FPGA: Recv ZSGSRD 29444
17-03-18 04:38:46.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:46.364 -07 000000424 INF: FPGA: Recv ZPIEZORD 24883
17-03-18 04:38:46.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:46.374 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -10.0 V.
17-03-18 04:38:46.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29441 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29435 (-128.6 uncal um), Max = 29447 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:38:46.374 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29441, posNoise = 6, negNoise = 6
17-03-18 04:38:46.374 -07 000000610 INF: Z Motor: After move to -0.129453, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:46.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:38:46.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:46.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:46.374 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:46.374 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:46.374 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:46.374 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:46.374 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:46.374 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:46.374 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:46.374 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:46.374 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:46.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:46.374 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:46.374 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:46.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:46.374 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:46.384 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:38:46.384 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:38:46.384 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:46.384 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:38:46.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28456 150\n [Camera]
17-03-18 04:38:46.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:38:46.684 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:46.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:47.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:47.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:47.014 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:47.024 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:47.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:47.024 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:47.024 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:47.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:47.024 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:47.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:47.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 808
17-03-18 04:38:47.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:47.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:38:47.394 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:38:47.394 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:47.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:38:47.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:38:47.404 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:47.404 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:47.404 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:38:47.404 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:47.414 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:38:47.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:47.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:47.564 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:47.564 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:47.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:47.564 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:47.574 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:47.574 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:38:47.574 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:47.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:38:47.754 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:38:47.754 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:47.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28456 150' command took 2 ms to send, 1355 ms to get response, and 1362 ms overall
17-03-18 04:38:47.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:47.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129458581676719. ------
17-03-18 04:38:47.884 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13608 mm
17-03-18 04:38:47.884 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:47.884 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.98264,
17-03-18 04:38:47.884 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:38:47.884 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 04:38:47.884 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29726, sync = True, waitForSettling = False)
17-03-18 04:38:47.884 -07 000000447 INF: Z Motor: Moving to -0.136077 mm, started at -0.129459 mm, distance = -6.62 um
17-03-18 04:38:47.894 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:47.894 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:47.904 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:38:47.914 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:47.914 -07 000000625 INF: FPGA: Recv YRDPOS 139685
17-03-18 04:38:47.924 -07 000000447 INF: FPGA: Xmit ZDACW 29726\n [Z Motor]
17-03-18 04:38:47.924 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 04:38:47.924 -07 000000618 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:47.924 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:38:47.924 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:47.924 -07 000000618 INF: Y Motor: Moving 1339 steps-15
17-03-18 04:38:47.934 -07 000000447 INF: FPGA: 'ZDACW 29726' command took 0 ms to send, 0 ms to get response, and 44 ms overall
17-03-18 04:38:47.934 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:47.954 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:47.964 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:47.964 -07 000000625 INF: FPGA: Recv ZDACR 29726
17-03-18 04:38:47.964 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:38:47.964 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:38:47.964 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:47.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:38:47.964 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:38:47.964 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:47.964 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:47.964 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:38:47.964 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:38:47.974 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 41 ms overall
17-03-18 04:38:47.974 -07 000000447 INF: Z Motor: MoveAbsStepped took 85 ms (did NOT wait for settling yet))
17-03-18 04:38:47.974 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:38:48.134 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:48.134 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 04:38:48.324 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:38:48.324 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-18 04:38:48.374 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:48.374 -07 000000606 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:38:48.384 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:38:48.384 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:48.384 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:38:48.384 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.838 mm, average velocity = 2.073 mm/sec
17-03-18 04:38:49.334 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:49.334 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:38:49.344 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:49.344 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:49.374 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:49.374 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:49.374 -07 000000618 INF: Y Motor: Moved to 69.0273 after 1485 ms (table move)
17-03-18 04:38:49.374 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136077 mm (DAC = 29726)
17-03-18 04:38:49.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.374 -07 000000424 INF: FPGA: Recv ZSGSRD 30476
17-03-18 04:38:49.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:49.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30474
17-03-18 04:38:49.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.394 -07 000000618 INF: FPGA: Recv ZSGSRD 30463
17-03-18 04:38:49.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30471
17-03-18 04:38:49.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.414 -07 000000618 INF: FPGA: Recv ZSGSRD 30473
17-03-18 04:38:49.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.424 -07 000000625 INF: FPGA: Recv ZSGSRD 30471
17-03-18 04:38:49.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.434 -07 000000579 INF: FPGA: Recv ZSGSRD 30472
17-03-18 04:38:49.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.444 -07 000000625 INF: FPGA: Recv ZSGSRD 30468
17-03-18 04:38:49.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.454 -07 000000606 INF: FPGA: Recv ZSGSRD 30469
17-03-18 04:38:49.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:49.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30475
17-03-18 04:38:49.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.474 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:49.474 -07 000000579 INF: FPGA: Recv ZPIEZORD 26240
17-03-18 04:38:49.484 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:49.484 -07 000000512 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -9.3 V.
17-03-18 04:38:49.484 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30471 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30472 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30463 (-135.2 uncal um), Max = 30476 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:38:49.484 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30471, posNoise = 5, negNoise = 8
17-03-18 04:38:49.484 -07 000000512 INF: Z Motor: After move to -0.136077, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:49.484 -07 000000512 INF: Z Motor: Settle wait time = 1488 ms, measure time = 108 ms (allowed 150 ms), total time = 1596 ms
17-03-18 04:38:49.484 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:49.534 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 04:38:49.534 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:49.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:49.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:49.534 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:49.534 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:49.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:49.534 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:49.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:38:49.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:49.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:49.544 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:49.544 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:38:49.544 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:38:49.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:49.604 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:38:49.904 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:38:49.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:38:49.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:49.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:49.934 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:49.934 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:49.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:38:50.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:38:50.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:50.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:50.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:38:50.034 -07 000000447 INF: Autofocus start
17-03-18 04:38:50.034 -07 000000447 INF: MeasureProfile start
17-03-18 04:38:50.034 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:50.034 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:50.044 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:50.044 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:50.044 -07 000000447 INF: MeasureProfile done
17-03-18 04:38:50.044 -07 000000447 INF: X=27  Z correction [um]=0.1059322
17-03-18 04:38:50.044 -07 000000447 INF: Autofocus finished
17-03-18 04:38:50.244 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:50.244 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:38:50.244 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136075520182733. ----------
17-03-18 04:38:50.254 -07 000000610 INF: Cycle	127	Tile	12	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:50.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28262, sync = True, waitForSettling = True)
17-03-18 04:38:50.254 -07 000000610 INF: Z Motor: Moving to -0.129375 mm, started at -0.136076 mm, distance = 6.70 um
17-03-18 04:38:50.254 -07 000000610 INF: FPGA: Xmit ZDACW 28262\n [Z Motor]
17-03-18 04:38:50.254 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:38:50.264 -07 000000610 INF: FPGA: 'ZDACW 28262' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:50.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:50.264 -07 000000625 INF: FPGA: Recv ZDACR 28262
17-03-18 04:38:50.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.424 -07 000000569 INF: FPGA: Recv ZSGSRD 29428
17-03-18 04:38:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29423
17-03-18 04:38:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29429
17-03-18 04:38:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.454 -07 000000447 INF: FPGA: Recv ZSGSRD 29426
17-03-18 04:38:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.464 -07 000000424 INF: FPGA: Recv ZSGSRD 29426
17-03-18 04:38:50.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.474 -07 000000569 INF: FPGA: Recv ZSGSRD 29429
17-03-18 04:38:50.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.484 -07 000000512 INF: FPGA: Recv ZSGSRD 29430
17-03-18 04:38:50.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.494 -07 000000618 INF: FPGA: Recv ZSGSRD 29423
17-03-18 04:38:50.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.504 -07 000000606 INF: FPGA: Recv ZSGSRD 29427
17-03-18 04:38:50.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:50.514 -07 000000618 INF: FPGA: Recv ZSGSRD 29426
17-03-18 04:38:50.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:50.524 -07 000000447 INF: FPGA: Recv ZPIEZORD 24862
17-03-18 04:38:50.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:50.534 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -10.0 V.
17-03-18 04:38:50.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29427 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29423 (-128.6 uncal um), Max = 29430 (-128.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:38:50.534 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29427, posNoise = 3, negNoise = 4
17-03-18 04:38:50.534 -07 000000610 INF: Z Motor: After move to -0.129375, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:50.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:38:50.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:50.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:50.534 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:50.534 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:50.534 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:50.534 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:50.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:50.534 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:50.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:38:50.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:50.534 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:50.534 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:50.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:50.534 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:50.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:50.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:50.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:50.544 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:38:50.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:38:50.554 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:38:50.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28439 150\n [Camera]
17-03-18 04:38:50.754 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:51.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:51.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:51.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:51.174 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:51.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:51.174 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:51.184 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:51.184 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:51.184 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:51.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:51.364 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28439 808
17-03-18 04:38:51.514 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:51.564 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:38:51.564 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:38:51.564 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:51.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:38:51.564 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:38:51.564 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:51.564 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:51.564 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:38:51.574 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:51.574 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:38:51.684 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:51.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:51.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:51.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:51.724 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:51.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:51.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:51.724 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:51.724 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:51.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:38:51.724 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:51.724 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:38:51.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:38:51.914 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:51.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28439 150' command took 2 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-18 04:38:51.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:51.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129368642706735. ------
17-03-18 04:38:51.914 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:51.914 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13583 mm
17-03-18 04:38:51.914 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:51.924 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:38:51.924 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 04:38:51.924 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:51.924 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:38:51.924 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:51.924 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29671, sync = True, waitForSettling = False)
17-03-18 04:38:51.924 -07 000000569 INF: Z Motor: Moving to -0.135825 mm, started at -0.129369 mm, distance = -6.46 um
17-03-18 04:38:51.924 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:38:51.934 -07 000000569 INF: FPGA: Xmit ZDACW 29671\n [Z Motor]
17-03-18 04:38:51.934 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:51.934 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:51.934 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:51.934 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:38:51.934 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:38:51.944 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:51.944 -07 000000569 INF: FPGA: 'ZDACW 29671' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:38:51.954 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:51.964 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:51.964 -07 000000618 INF: FPGA: Recv ZDACR 29671
17-03-18 04:38:51.974 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:38:51.974 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:38:52.124 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:38:52.124 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:38:52.124 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:52.124 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:38:52.124 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:38:52.124 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:52.134 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:52.134 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:38:52.134 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:52.134 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:38:52.144 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:52.144 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 04:38:52.324 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:38:52.324 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:38:52.374 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:52.384 -07 000000579 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:38:52.384 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:38:52.384 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:52.384 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:38:52.384 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 04:38:53.314 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.004458,
17-03-18 04:38:53.334 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:53.334 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:38:53.344 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.344 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:53.374 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:53.374 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:53.374 -07 000000502 INF: Y Motor: Moved to 69.8633 after 1450 ms (table move)
17-03-18 04:38:53.374 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135825 mm (DAC = 29671)
17-03-18 04:38:53.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.374 -07 000000502 INF: FPGA: Recv ZSGSRD 30438
17-03-18 04:38:53.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:38:53.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.384 -07 000000569 INF: FPGA: Recv ZSGSRD 30430
17-03-18 04:38:53.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30427
17-03-18 04:38:53.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.404 -07 000000569 INF: FPGA: Recv ZSGSRD 30434
17-03-18 04:38:53.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.414 -07 000000579 INF: FPGA: Recv ZSGSRD 30427
17-03-18 04:38:53.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.424 -07 000000618 INF: FPGA: Recv ZSGSRD 30443
17-03-18 04:38:53.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.434 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.434 -07 000000618 INF: FPGA: Recv ZSGSRD 30427
17-03-18 04:38:53.444 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.444 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.444 -07 000000618 INF: FPGA: Recv ZSGSRD 30430
17-03-18 04:38:53.454 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.454 -07 000000501 INF: FPGA: Recv ZSGSRD 30431
17-03-18 04:38:53.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.464 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:53.464 -07 000000501 INF: FPGA: Recv ZSGSRD 30434
17-03-18 04:38:53.474 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.474 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:53.474 -07 000000618 INF: FPGA: Recv ZPIEZORD 26219
17-03-18 04:38:53.484 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:53.484 -07 000000424 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.3 V.
17-03-18 04:38:53.484 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30432 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30430 (-135.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30427 (-135.0 uncal um), Max = 30443 (-135.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:38:53.484 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30432, posNoise = 11, negNoise = 5
17-03-18 04:38:53.484 -07 000000424 INF: Z Motor: After move to -0.135825, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:53.484 -07 000000424 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:38:53.484 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:53.534 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:38:53.534 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:53.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:53.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:53.534 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:53.534 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:53.534 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:53.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:53.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:53.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:53.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:53.544 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:53.554 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:38:53.554 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:38:53.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:53.604 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:38:53.904 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:38:53.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:38:53.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:53.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:38:53.934 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:53.934 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:53.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:38:54.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:38:54.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:54.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:54.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:38:54.034 -07 000000501 INF: Autofocus start
17-03-18 04:38:54.034 -07 000000501 INF: MeasureProfile start
17-03-18 04:38:54.034 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:54.034 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:54.044 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:54.044 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:54.044 -07 000000501 INF: MeasureProfile done
17-03-18 04:38:54.044 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:38:54.044 -07 000000501 INF: Autofocus finished
17-03-18 04:38:54.244 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:54.244 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:54.244 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135824975909204. ----------
17-03-18 04:38:54.244 -07 000000610 INF: Cycle	127	Tile	13	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:54.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28166, sync = True, waitForSettling = True)
17-03-18 04:38:54.254 -07 000000610 INF: Z Motor: Moving to -0.128936 mm, started at -0.135825 mm, distance = 6.89 um
17-03-18 04:38:54.254 -07 000000610 INF: FPGA: Xmit ZDACW 28166\n [Z Motor]
17-03-18 04:38:54.254 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:38:54.264 -07 000000610 INF: FPGA: 'ZDACW 28166' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:54.264 -07 000000579 INF: FPGA: Recv ZDACR 28166
17-03-18 04:38:54.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.424 -07 000000608 INF: FPGA: Recv ZSGSRD 29357
17-03-18 04:38:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29367
17-03-18 04:38:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.444 -07 000000608 INF: FPGA: Recv ZSGSRD 29365
17-03-18 04:38:54.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.454 -07 000000618 INF: FPGA: Recv ZSGSRD 29359
17-03-18 04:38:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.464 -07 000000424 INF: FPGA: Recv ZSGSRD 29359
17-03-18 04:38:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29360
17-03-18 04:38:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.484 -07 000000569 INF: FPGA: Recv ZSGSRD 29360
17-03-18 04:38:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.494 -07 000000424 INF: FPGA: Recv ZSGSRD 29356
17-03-18 04:38:54.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29358
17-03-18 04:38:54.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:54.514 -07 000000625 INF: FPGA: Recv ZSGSRD 29360
17-03-18 04:38:54.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:54.524 -07 000000579 INF: FPGA: Recv ZPIEZORD 24802
17-03-18 04:38:54.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:54.534 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -10.0 V.
17-03-18 04:38:54.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29360 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29360 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29356 (-128.1 uncal um), Max = 29367 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:38:54.534 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29360, posNoise = 7, negNoise = 4
17-03-18 04:38:54.534 -07 000000610 INF: Z Motor: After move to -0.128936, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:54.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:38:54.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:54.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:54.534 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:54.534 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:54.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:54.534 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:54.534 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:54.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:54.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:54.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:54.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:38:54.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:54.544 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:54.544 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:54.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:38:54.544 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:54.554 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:38:54.554 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:38:54.554 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:38:54.554 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:38:54.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28343 150\n [Camera]
17-03-18 04:38:54.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:55.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:38:55.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:38:55.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:55.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:55.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:38:55.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:38:55.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:38:55.174 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:55.174 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:55.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:38:55.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28343 808
17-03-18 04:38:55.514 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:55.554 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:38:55.554 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:38:55.554 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:55.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:38:55.554 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:38:55.554 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:55.564 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:38:55.564 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:38:55.564 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:38:55.564 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:38:55.724 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:55.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:55.724 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:55.724 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:55.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:38:55.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:55.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:55.724 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:55.724 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:55.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:38:55.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:38:55.914 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:38:55.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28343 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-18 04:38:55.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:38:55.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.128938220493237. ------
17-03-18 04:38:55.914 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:55.914 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13531 mm
17-03-18 04:38:55.914 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:38:55.924 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:55.924 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:38:55.924 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29559, sync = True, waitForSettling = False)
17-03-18 04:38:55.924 -07 000000424 INF: Z Motor: Moving to -0.135312 mm, started at -0.128938 mm, distance = -6.37 um
17-03-18 04:38:55.924 -07 000000424 INF: FPGA: Xmit ZDACW 29559\n [Z Motor]
17-03-18 04:38:55.924 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:38:55.924 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 04:38:55.924 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:38:55.934 -07 000000424 INF: FPGA: 'ZDACW 29559' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:38:55.934 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:55.934 -07 000000474 INF: FPGA: Recv YRDPOS 143081
17-03-18 04:38:55.944 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:38:55.944 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:38:55.944 -07 000000512 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:55.944 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:38:55.944 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:38:56.054 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:56.064 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:38:56.064 -07 000000569 INF: FPGA: Recv ZDACR 29559
17-03-18 04:38:56.064 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 132 ms overall
17-03-18 04:38:56.064 -07 000000424 INF: Z Motor: MoveAbsStepped took 140 ms (did NOT wait for settling yet))
17-03-18 04:38:56.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:38:56.114 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:38:56.114 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:56.114 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:38:56.114 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:38:56.114 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:56.114 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:56.124 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:38:56.124 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:38:56.124 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:38:56.144 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:38:56.144 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 83 ms to get response, and 220 ms overall
17-03-18 04:38:56.434 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:38:56.434 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 04:38:56.484 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:56.494 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:38:56.494 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:38:56.494 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:56.494 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:38:56.494 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 494 ms, distance = 0.839 mm, average velocity = 1.699 mm/sec
17-03-18 04:38:56.684 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:38:56.684 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:38:57.444 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:38:57.444 -07 000000382 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:38:57.454 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.454 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:38:57.484 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:38:57.484 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:38:57.484 -07 000000512 INF: Y Motor: Moved to 70.6885 after 1557 ms (table move)
17-03-18 04:38:57.484 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135312 mm (DAC = 29559)
17-03-18 04:38:57.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.484 -07 000000625 INF: FPGA: Recv ZSGSRD 30358
17-03-18 04:38:57.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:38:57.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.494 -07 000000579 INF: FPGA: Recv ZSGSRD 30345
17-03-18 04:38:57.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.504 -07 000000625 INF: FPGA: Recv ZSGSRD 30352
17-03-18 04:38:57.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.514 -07 000000501 INF: FPGA: Recv ZSGSRD 30355
17-03-18 04:38:57.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.524 -07 000000579 INF: FPGA: Recv ZSGSRD 30352
17-03-18 04:38:57.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.534 -07 000000501 INF: FPGA: Recv ZSGSRD 30350
17-03-18 04:38:57.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30353
17-03-18 04:38:57.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.554 -07 000000501 INF: FPGA: Recv ZSGSRD 30353
17-03-18 04:38:57.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.564 -07 000000579 INF: FPGA: Recv ZSGSRD 30352
17-03-18 04:38:57.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:57.574 -07 000000501 INF: FPGA: Recv ZSGSRD 30355
17-03-18 04:38:57.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.584 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:57.584 -07 000000569 INF: FPGA: Recv ZPIEZORD 26124
17-03-18 04:38:57.594 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:57.594 -07 000000608 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -9.3 V.
17-03-18 04:38:57.594 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30352 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30352 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30345 (-134.5 uncal um), Max = 30358 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:38:57.594 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30352, posNoise = 6, negNoise = 7
17-03-18 04:38:57.594 -07 000000608 INF: Z Motor: After move to -0.135312, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:57.594 -07 000000608 INF: Z Motor: Settle wait time = 1561 ms, measure time = 107 ms (allowed 150 ms), total time = 1668 ms
17-03-18 04:38:57.594 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:38:57.644 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-18 04:38:57.644 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:38:57.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:57.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:57.644 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:57.644 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:57.644 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:38:57.644 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:57.644 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:57.644 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:38:57.654 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:38:57.654 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:38:57.654 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:38:57.654 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:38:57.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:38:57.704 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:38:58.004 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:38:58.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:38:58.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:38:58.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:38:58.044 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:38:58.044 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:38:58.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:38:58.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:38:58.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:58.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:38:58.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:38:58.144 -07 000000579 INF: Autofocus start
17-03-18 04:38:58.144 -07 000000579 INF: MeasureProfile start
17-03-18 04:38:58.144 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:38:58.144 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:38:58.154 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:38:58.154 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:38:58.154 -07 000000579 INF: MeasureProfile done
17-03-18 04:38:58.154 -07 000000579 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:38:58.154 -07 000000579 INF: Autofocus finished
17-03-18 04:38:58.354 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:38:58.354 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:38:58.354 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135311038937864. ----------
17-03-18 04:38:58.354 -07 000000610 INF: Cycle	127	Tile	14	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:38:58.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28083, sync = True, waitForSettling = True)
17-03-18 04:38:58.364 -07 000000610 INF: Z Motor: Moving to -0.128556 mm, started at -0.135311 mm, distance = 6.76 um
17-03-18 04:38:58.374 -07 000000610 INF: FPGA: Xmit ZDACW 28083\n [Z Motor]
17-03-18 04:38:58.374 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:38:58.384 -07 000000610 INF: FPGA: 'ZDACW 28083' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:38:58.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:38:58.384 -07 000000424 INF: FPGA: Recv ZDACR 28083
17-03-18 04:38:58.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:38:58.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.544 -07 000000579 INF: FPGA: Recv ZSGSRD 29299
17-03-18 04:38:58.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:38:58.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.554 -07 000000382 INF: FPGA: Recv ZSGSRD 29301
17-03-18 04:38:58.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.564 -07 000000569 INF: FPGA: Recv ZSGSRD 29300
17-03-18 04:38:58.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.574 -07 000000608 INF: FPGA: Recv ZSGSRD 29301
17-03-18 04:38:58.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.584 -07 000000579 INF: FPGA: Recv ZSGSRD 29301
17-03-18 04:38:58.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.594 -07 000000581 INF: FPGA: Recv ZSGSRD 29303
17-03-18 04:38:58.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.604 -07 000000618 INF: FPGA: Recv ZSGSRD 29307
17-03-18 04:38:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.614 -07 000000591 INF: FPGA: Recv ZSGSRD 29304
17-03-18 04:38:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.624 -07 000000590 INF: FPGA: Recv ZSGSRD 29297
17-03-18 04:38:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:38:58.634 -07 000000382 INF: FPGA: Recv ZSGSRD 29303
17-03-18 04:38:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:38:58.644 -07 000000512 INF: FPGA: Recv ZPIEZORD 24735
17-03-18 04:38:58.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:38:58.654 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -10.0 V.
17-03-18 04:38:58.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29302 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29301 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29297 (-127.8 uncal um), Max = 29307 (-127.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:38:58.654 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29302, posNoise = 5, negNoise = 5
17-03-18 04:38:58.654 -07 000000610 INF: Z Motor: After move to -0.128556, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:38:58.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 04:38:58.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:38:58.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:38:58.654 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:38:58.654 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:38:58.654 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:38:58.654 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:38:58.654 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:38:58.654 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:38:58.654 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:38:58.654 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:38:58.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:38:58.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:38:58.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:38:58.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:38:58.664 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:38:58.664 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:38:58.674 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:38:58.674 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:38:58.674 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:38:58.674 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:38:58.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28260 150\n [Camera]
17-03-18 04:38:58.684 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 3.983999,
17-03-18 04:38:58.874 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:38:59.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 616
17-03-18 04:38:59.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 616
17-03-18 04:38:59.304 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:59.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 616
17-03-18 04:38:59.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 616
17-03-18 04:38:59.304 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:59.314 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:59.314 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:38:59.314 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:59.314 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:38:59.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28260 810
17-03-18 04:38:59.644 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:38:59.684 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:38:59.684 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:38:59.684 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:59.694 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:59.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:38:59.694 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:38:59.694 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:38:59.694 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:38:59.694 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:38:59.704 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:38:59.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:38:59.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:38:59.854 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:38:59.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:38:59.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:38:59.854 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:38:59.854 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:38:59.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:38:59.854 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:38:59.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:39:00.044 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:39:00.044 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:39:00.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28260 150' command took 2 ms to send, 1351 ms to get response, and 1364 ms overall
17-03-18 04:39:00.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:39:00.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128565616189015. ------
17-03-18 04:39:00.044 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:00.044 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13527 mm
17-03-18 04:39:00.044 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:39:00.164 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:00.164 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 04:39:00.164 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:39:00.164 -07 000000474 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 04:39:00.164 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:39:00.164 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29550, sync = True, waitForSettling = False)
17-03-18 04:39:00.164 -07 000000625 INF: Z Motor: Moving to -0.135271 mm, started at -0.128566 mm, distance = -6.71 um
17-03-18 04:39:00.174 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:00.174 -07 000000590 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:39:00.184 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:39:00.184 -07 000000474 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:00.184 -07 000000474 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:39:00.184 -07 000000474 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:39:00.184 -07 000000625 INF: FPGA: Xmit ZDACW 29550\n [Z Motor]
17-03-18 04:39:00.184 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:39:00.194 -07 000000625 INF: FPGA: 'ZDACW 29550' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:39:00.194 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:00.194 -07 000000382 INF: FPGA: Recv ZDACR 29550
17-03-18 04:39:00.204 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:00.204 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:39:00.204 -07 000000625 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 04:39:00.254 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:39:00.254 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:39:00.254 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:00.264 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:39:00.264 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:39:00.264 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:00.264 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:00.264 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:39:00.264 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:00.274 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:39:00.364 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:39:00.364 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 04:39:00.574 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:39:00.574 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:39:00.624 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:00.634 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:39:00.634 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:39:00.634 -07 000000474 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:00.634 -07 000000474 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:39:00.634 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 04:39:01.584 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:01.584 -07 000000608 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:39:01.594 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:01.594 -07 000000474 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:01.624 -07 000000474 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:39:01.624 -07 000000474 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:39:01.624 -07 000000474 INF: Y Motor: Moved to 71.5190 after 1454 ms (table move)
17-03-18 04:39:01.624 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135271 mm (DAC = 29550)
17-03-18 04:39:01.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.624 -07 000000626 INF: FPGA: Recv ZSGSRD 30341
17-03-18 04:39:01.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:39:01.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.634 -07 000000382 INF: FPGA: Recv ZSGSRD 30345
17-03-18 04:39:01.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.644 -07 000000424 INF: FPGA: Recv ZSGSRD 30344
17-03-18 04:39:01.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.654 -07 000000474 INF: FPGA: Recv ZSGSRD 30345
17-03-18 04:39:01.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.664 -07 000000608 INF: FPGA: Recv ZSGSRD 30347
17-03-18 04:39:01.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.674 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.674 -07 000000569 INF: FPGA: Recv ZSGSRD 30350
17-03-18 04:39:01.684 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.684 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.684 -07 000000625 INF: FPGA: Recv ZSGSRD 30345
17-03-18 04:39:01.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:01.694 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.694 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:39:01.694 -07 000000474 INF: FPGA: Recv ZSGSRD 30340
17-03-18 04:39:01.704 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.704 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.704 -07 000000626 INF: FPGA: Recv ZSGSRD 30346
17-03-18 04:39:01.714 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.714 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:01.714 -07 000000590 INF: FPGA: Recv ZSGSRD 30350
17-03-18 04:39:01.724 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.724 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:01.724 -07 000000608 INF: FPGA: Recv ZPIEZORD 26104
17-03-18 04:39:01.734 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:01.734 -07 000000581 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.3 V.
17-03-18 04:39:01.734 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30345 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30345 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30340 (-134.4 uncal um), Max = 30350 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:39:01.734 -07 000000581 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30345, posNoise = 5, negNoise = 5
17-03-18 04:39:01.734 -07 000000581 INF: Z Motor: After move to -0.135271, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:01.734 -07 000000581 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:39:01.734 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:39:01.784 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 04:39:01.784 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:39:01.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:01.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:01.784 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:01.784 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:01.784 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:39:01.784 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:01.784 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:01.794 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:39:01.794 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:01.794 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:39:01.804 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:39:01.804 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:39:01.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:39:01.854 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:39:02.154 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:39:02.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:39:02.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:39:02.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:39:02.194 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:39:02.194 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 04:39:02.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:39:02.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:39:02.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:02.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:39:02.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:39:02.294 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:02.294 -07 000000590 INF: Autofocus start
17-03-18 04:39:02.294 -07 000000590 INF: MeasureProfile start
17-03-18 04:39:02.304 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:02.304 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 04:39:02.304 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:39:02.314 -07 000000590 INF: MeasureProfile done
17-03-18 04:39:02.314 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:39:02.314 -07 000000590 INF: Autofocus finished
17-03-18 04:39:02.504 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:39:02.504 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:39:02.514 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135266069452871. ----------
17-03-18 04:39:02.514 -07 000000610 INF: Cycle	127	Tile	15	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:39:02.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28057, sync = True, waitForSettling = True)
17-03-18 04:39:02.514 -07 000000610 INF: Z Motor: Moving to -0.128437 mm, started at -0.135266 mm, distance = 6.83 um
17-03-18 04:39:02.514 -07 000000610 INF: FPGA: Xmit ZDACW 28057\n [Z Motor]
17-03-18 04:39:02.514 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:39:02.524 -07 000000610 INF: FPGA: 'ZDACW 28057' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:39:02.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:02.524 -07 000000625 INF: FPGA: Recv ZDACR 28057
17-03-18 04:39:02.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:39:02.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.684 -07 000000424 INF: FPGA: Recv ZSGSRD 29290
17-03-18 04:39:02.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:02.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.694 -07 000000625 INF: FPGA: Recv ZSGSRD 29285
17-03-18 04:39:02.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.704 -07 000000382 INF: FPGA: Recv ZSGSRD 29285
17-03-18 04:39:02.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.714 -07 000000625 INF: FPGA: Recv ZSGSRD 29285
17-03-18 04:39:02.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.724 -07 000000569 INF: FPGA: Recv ZSGSRD 29280
17-03-18 04:39:02.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.734 -07 000000424 INF: FPGA: Recv ZSGSRD 29289
17-03-18 04:39:02.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.744 -07 000000581 INF: FPGA: Recv ZSGSRD 29285
17-03-18 04:39:02.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.754 -07 000000590 INF: FPGA: Recv ZSGSRD 29282
17-03-18 04:39:02.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.764 -07 000000625 INF: FPGA: Recv ZSGSRD 29284
17-03-18 04:39:02.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:02.774 -07 000000474 INF: FPGA: Recv ZSGSRD 29285
17-03-18 04:39:02.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:02.784 -07 000000569 INF: FPGA: Recv ZPIEZORD 24699
17-03-18 04:39:02.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:02.794 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -10.0 V.
17-03-18 04:39:02.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29285 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29285 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29280 (-127.6 uncal um), Max = 29290 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:39:02.794 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29285, posNoise = 5, negNoise = 5
17-03-18 04:39:02.794 -07 000000610 INF: Z Motor: After move to -0.128437, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:02.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:39:02.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:02.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:02.794 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:02.794 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:02.794 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:39:02.794 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:39:02.794 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:39:02.794 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:02.794 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:39:02.794 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:39:02.794 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:02.794 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:39:02.804 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:39:02.804 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:39:02.804 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:39:02.804 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:39:02.814 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:39:02.814 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:39:02.814 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:39:02.814 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:39:02.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28234 150\n [Camera]
17-03-18 04:39:03.014 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:39:03.434 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:39:03.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:39:03.434 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:03.434 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:39:03.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:39:03.444 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:03.444 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:03.444 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:39:03.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:03.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:39:03.624 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28234 808
17-03-18 04:39:03.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:39:03.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 04:39:03.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 04:39:03.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:03.814 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:39:03.814 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:39:03.814 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:03.814 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:03.824 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:03.824 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:39:03.824 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:39:03.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:39:03.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:39:03.984 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:03.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:39:03.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:39:03.984 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:03.984 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:03.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:39:03.984 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:03.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:39:04.054 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.009895,
17-03-18 04:39:04.174 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:39:04.174 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:39:04.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28234 150' command took 2 ms to send, 1354 ms to get response, and 1361 ms overall
17-03-18 04:39:04.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:39:04.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128456404582605. ------
17-03-18 04:39:04.174 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:04.174 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13486 mm
17-03-18 04:39:04.174 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:39:04.184 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:04.184 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:39:04.184 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:39:04.184 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:39:04.184 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 04:39:04.184 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29459, sync = True, waitForSettling = False)
17-03-18 04:39:04.184 -07 000000608 INF: Z Motor: Moving to -0.134855 mm, started at -0.128456 mm, distance = -6.40 um
17-03-18 04:39:04.194 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:04.194 -07 000000579 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:39:04.204 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:39:04.204 -07 000000608 INF: FPGA: Xmit ZDACW 29459\n [Z Motor]
17-03-18 04:39:04.204 -07 000000626 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:04.204 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:39:04.204 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:39:04.204 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:39:04.214 -07 000000608 INF: FPGA: 'ZDACW 29459' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:39:04.214 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:04.214 -07 000000480 INF: FPGA: Recv ZDACR 29459
17-03-18 04:39:04.224 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:39:04.224 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:04.224 -07 000000608 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 04:39:04.384 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:39:04.384 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:39:04.384 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:04.384 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:39:04.384 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 04:39:04.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:39:04.384 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:39:04.384 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:04.384 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:04.384 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:39:04.394 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:04.394 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:39:04.594 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:39:04.594 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:39:04.644 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:04.644 -07 000000474 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:39:04.654 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:39:04.654 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:04.654 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 04:39:04.654 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 04:39:05.604 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:05.604 -07 000000382 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:39:05.614 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:05.614 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:05.644 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:39:05.644 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:39:05.644 -07 000000626 INF: Y Motor: Moved to 72.3496 after 1456 ms (table move)
17-03-18 04:39:05.644 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134855 mm (DAC = 29459)
17-03-18 04:39:05.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.644 -07 000000590 INF: FPGA: Recv ZSGSRD 30278
17-03-18 04:39:05.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:39:05.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.654 -07 000000424 INF: FPGA: Recv ZSGSRD 30279
17-03-18 04:39:05.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.664 -07 000000590 INF: FPGA: Recv ZSGSRD 30280
17-03-18 04:39:05.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.674 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.674 -07 000000424 INF: FPGA: Recv ZSGSRD 30281
17-03-18 04:39:05.684 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.684 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.684 -07 000000474 INF: FPGA: Recv ZSGSRD 30287
17-03-18 04:39:05.694 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.694 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.694 -07 000000591 INF: FPGA: Recv ZSGSRD 30276
17-03-18 04:39:05.704 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.704 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.704 -07 000000579 INF: FPGA: Recv ZSGSRD 30285
17-03-18 04:39:05.714 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.714 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.714 -07 000000447 INF: FPGA: Recv ZSGSRD 30283
17-03-18 04:39:05.724 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.724 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.724 -07 000000502 INF: FPGA: Recv ZSGSRD 30281
17-03-18 04:39:05.734 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.734 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:05.734 -07 000000626 INF: FPGA: Recv ZSGSRD 30289
17-03-18 04:39:05.744 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.744 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:05.744 -07 000000424 INF: FPGA: Recv ZPIEZORD 26051
17-03-18 04:39:05.754 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:05.754 -07 000000581 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -9.3 V.
17-03-18 04:39:05.754 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30282 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30281 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30276 (-134.0 uncal um), Max = 30289 (-134.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:39:05.754 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30282, posNoise = 7, negNoise = 6
17-03-18 04:39:05.754 -07 000000581 INF: Z Motor: After move to -0.134855, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:05.754 -07 000000581 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:39:05.754 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:39:05.804 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:39:05.804 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:39:05.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:05.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:05.804 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:05.804 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:39:05.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:05.804 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:05.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:05.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:39:05.814 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:05.814 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:39:05.814 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:39:05.814 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:39:05.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:39:05.864 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:39:06.164 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:39:06.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:39:06.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:39:06.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:39:06.204 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:39:06.204 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:39:06.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:39:06.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:39:06.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:06.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:39:06.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:39:06.304 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:06.304 -07 000000382 INF: Autofocus start
17-03-18 04:39:06.304 -07 000000382 INF: MeasureProfile start
17-03-18 04:39:06.304 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:06.314 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:39:06.314 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:39:06.314 -07 000000382 INF: MeasureProfile done
17-03-18 04:39:06.314 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:39:06.314 -07 000000382 INF: Autofocus finished
17-03-18 04:39:06.514 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:39:06.514 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:39:06.524 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.13486134408794. ----------
17-03-18 04:39:06.524 -07 000000610 INF: Cycle	127	Tile	16	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:39:06.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27954, sync = True, waitForSettling = True)
17-03-18 04:39:06.524 -07 000000610 INF: Z Motor: Moving to -0.127965 mm, started at -0.134861 mm, distance = 6.90 um
17-03-18 04:39:06.524 -07 000000610 INF: FPGA: Xmit ZDACW 27954\n [Z Motor]
17-03-18 04:39:06.524 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:39:06.534 -07 000000610 INF: FPGA: 'ZDACW 27954' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:39:06.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:06.534 -07 000000569 INF: FPGA: Recv ZDACR 27954
17-03-18 04:39:06.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:39:06.684 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:39:06.694 -07 000000382 INF: FPGA: Recv ZSGSRD 29217
17-03-18 04:39:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:06.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.704 -07 000000447 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:39:06.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.714 -07 000000382 INF: FPGA: Recv ZSGSRD 29208
17-03-18 04:39:06.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.724 -07 000000447 INF: FPGA: Recv ZSGSRD 29209
17-03-18 04:39:06.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.734 -07 000000382 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:39:06.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.744 -07 000000447 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:39:06.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.754 -07 000000382 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:39:06.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.764 -07 000000447 INF: FPGA: Recv ZSGSRD 29209
17-03-18 04:39:06.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.774 -07 000000382 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:39:06.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:06.784 -07 000000447 INF: FPGA: Recv ZSGSRD 29206
17-03-18 04:39:06.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:06.794 -07 000000382 INF: FPGA: Recv ZPIEZORD 24629
17-03-18 04:39:06.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:06.804 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -10.0 V.
17-03-18 04:39:06.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29210 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29209 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29206 (-127.2 uncal um), Max = 29217 (-127.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:39:06.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29210, posNoise = 7, negNoise = 4
17-03-18 04:39:06.804 -07 000000610 INF: Z Motor: After move to -0.127965, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:06.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:39:06.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:06.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:06.804 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:06.804 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:39:06.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:39:06.804 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:06.804 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:39:06.804 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:06.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:39:06.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:39:06.804 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:06.804 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:39:06.814 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:39:06.814 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:39:06.814 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:06.814 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:39:06.824 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:39:06.824 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:39:06.824 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:39:06.824 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:39:06.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28131 150\n [Camera]
17-03-18 04:39:07.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:39:07.454 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:39:07.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:39:07.454 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:07.454 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:07.454 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:39:07.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:39:07.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:39:07.454 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:07.454 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:07.454 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:39:07.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28131 808
17-03-18 04:39:07.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:39:07.844 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:39:07.844 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:39:07.844 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:07.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:39:07.844 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:39:07.844 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:07.844 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:07.844 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:39:07.844 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:07.854 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:39:08.004 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1163
17-03-18 04:39:08.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1163
17-03-18 04:39:08.004 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:08.004 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:08.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:39:08.004 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1163
17-03-18 04:39:08.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1163
17-03-18 04:39:08.004 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:08.004 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:08.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:39:08.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:39:08.194 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:39:08.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28131 150' command took 2 ms to send, 1350 ms to get response, and 1360 ms overall
17-03-18 04:39:08.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:39:08.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127974588671973. ------
17-03-18 04:39:08.304 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13447 mm
17-03-18 04:39:08.304 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:39:08.304 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:08.314 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:39:08.314 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 04:39:08.314 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:08.314 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29375, sync = True, waitForSettling = False)
17-03-18 04:39:08.314 -07 000000512 INF: Z Motor: Moving to -0.134470 mm, started at -0.127975 mm, distance = -6.50 um
17-03-18 04:39:08.314 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:08.314 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 04:39:08.314 -07 000000591 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:39:08.324 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:39:08.324 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:39:08.324 -07 000000424 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:08.324 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:39:08.324 -07 000000424 INF: Y Motor: Moving 1349 steps-27
17-03-18 04:39:08.334 -07 000000512 INF: FPGA: Xmit ZDACW 29375\n [Z Motor]
17-03-18 04:39:08.334 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:39:08.344 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:39:08.344 -07 000000512 INF: FPGA: 'ZDACW 29375' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:39:08.354 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:08.354 -07 000000447 INF: FPGA: Recv ZDACR 29375
17-03-18 04:39:08.364 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:39:08.364 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:39:08.394 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:39:08.394 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:39:08.394 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:08.404 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:39:08.404 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:39:08.404 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:08.404 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:08.404 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:39:08.404 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:39:08.414 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:39:08.524 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:39:08.524 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 04:39:08.714 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:39:08.714 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:39:08.764 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:08.764 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:39:08.774 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:39:08.774 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:08.774 -07 000000424 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:39:08.774 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-18 04:39:09.414 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.026244,
17-03-18 04:39:09.744 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:09.744 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:39:09.754 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:39:09.754 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:09.784 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:39:09.784 -07 000000424 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:39:09.784 -07 000000424 INF: Y Motor: Moved to 73.1763 after 1470 ms (table move)
17-03-18 04:39:09.784 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134470 mm (DAC = 29375)
17-03-18 04:39:09.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.784 -07 000000512 INF: FPGA: Recv ZSGSRD 30216
17-03-18 04:39:09.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:39:09.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.794 -07 000000447 INF: FPGA: Recv ZSGSRD 30224
17-03-18 04:39:09.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.804 -07 000000512 INF: FPGA: Recv ZSGSRD 30220
17-03-18 04:39:09.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.814 -07 000000447 INF: FPGA: Recv ZSGSRD 30219
17-03-18 04:39:09.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.824 -07 000000591 INF: FPGA: Recv ZSGSRD 30216
17-03-18 04:39:09.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.834 -07 000000447 INF: FPGA: Recv ZSGSRD 30222
17-03-18 04:39:09.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.844 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.844 -07 000000501 INF: FPGA: Recv ZSGSRD 30216
17-03-18 04:39:09.854 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.854 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.854 -07 000000447 INF: FPGA: Recv ZSGSRD 30221
17-03-18 04:39:09.864 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.864 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.864 -07 000000501 INF: FPGA: Recv ZSGSRD 30220
17-03-18 04:39:09.874 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.874 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:09.874 -07 000000447 INF: FPGA: Recv ZSGSRD 30224
17-03-18 04:39:09.884 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.884 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:09.884 -07 000000512 INF: FPGA: Recv ZPIEZORD 25955
17-03-18 04:39:09.894 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:09.894 -07 000000579 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -9.4 V.
17-03-18 04:39:09.894 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30220 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30220 (-133.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30216 (-133.6 uncal um), Max = 30224 (-133.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:39:09.894 -07 000000579 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30220, posNoise = 4, negNoise = 4
17-03-18 04:39:09.894 -07 000000579 INF: Z Motor: After move to -0.134470, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:09.894 -07 000000579 INF: Z Motor: Settle wait time = 1473 ms, measure time = 106 ms (allowed 150 ms), total time = 1579 ms
17-03-18 04:39:09.894 -07 000000579 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:39:09.944 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 04:39:09.944 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:39:09.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:09.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:09.944 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:09.944 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:09.944 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:39:09.944 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:09.944 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:39:09.944 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:39:09.944 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:09.944 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:39:09.964 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:39:09.964 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:39:09.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:39:10.014 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:39:10.314 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:39:10.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:39:10.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:39:10.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:39:10.354 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:39:10.354 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:39:10.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:39:10.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:39:10.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:10.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:39:10.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:39:10.454 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:10.454 -07 000000569 INF: Autofocus start
17-03-18 04:39:10.454 -07 000000569 INF: MeasureProfile start
17-03-18 04:39:10.454 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:10.464 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:39:10.464 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:39:10.474 -07 000000569 INF: MeasureProfile done
17-03-18 04:39:10.474 -07 000000569 INF: X=21  Z correction [um]=0.07706985
17-03-18 04:39:10.474 -07 000000569 INF: Autofocus finished
17-03-18 04:39:10.664 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:39:10.664 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:39:10.664 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134463042935151. ----------
17-03-18 04:39:10.664 -07 000000610 INF: Cycle	127	Tile	17	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:39:10.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27904, sync = True, waitForSettling = True)
17-03-18 04:39:10.674 -07 000000610 INF: Z Motor: Moving to -0.127736 mm, started at -0.134463 mm, distance = 6.73 um
17-03-18 04:39:10.674 -07 000000610 INF: FPGA: Xmit ZDACW 27904\n [Z Motor]
17-03-18 04:39:10.674 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:39:10.684 -07 000000610 INF: FPGA: 'ZDACW 27904' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:10.684 -07 000000591 INF: FPGA: Recv ZDACR 27904
17-03-18 04:39:10.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:39:10.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.844 -07 000000626 INF: FPGA: Recv ZSGSRD 29177
17-03-18 04:39:10.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:10.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.854 -07 000000512 INF: FPGA: Recv ZSGSRD 29175
17-03-18 04:39:10.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.864 -07 000000581 INF: FPGA: Recv ZSGSRD 29173
17-03-18 04:39:10.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.874 -07 000000502 INF: FPGA: Recv ZSGSRD 29172
17-03-18 04:39:10.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.884 -07 000000569 INF: FPGA: Recv ZSGSRD 29178
17-03-18 04:39:10.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.894 -07 000000579 INF: FPGA: Recv ZSGSRD 29178
17-03-18 04:39:10.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.904 -07 000000606 INF: FPGA: Recv ZSGSRD 29175
17-03-18 04:39:10.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29171
17-03-18 04:39:10.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29173
17-03-18 04:39:10.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:10.934 -07 000000579 INF: FPGA: Recv ZSGSRD 29174
17-03-18 04:39:10.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:10.944 -07 000000501 INF: FPGA: Recv ZPIEZORD 24581
17-03-18 04:39:10.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:10.954 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -10.1 V.
17-03-18 04:39:10.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29175 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29174 (-127.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29171 (-127.0 uncal um), Max = 29178 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:39:10.954 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29175, posNoise = 3, negNoise = 4
17-03-18 04:39:10.954 -07 000000610 INF: Z Motor: After move to -0.127736, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:10.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:39:10.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:10.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:10.954 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:10.954 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:10.954 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:39:10.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:10.954 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:39:10.954 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:39:10.954 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:39:10.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:39:10.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:10.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:39:10.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:39:10.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:39:10.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:39:10.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:39:10.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:39:10.964 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:39:10.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:39:10.964 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:39:10.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 28081 150\n [Camera]
17-03-18 04:39:11.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:39:11.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:39:11.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:39:11.594 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:11.604 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:11.604 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:39:11.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:39:11.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:39:11.604 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:11.604 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:11.604 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:39:11.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:39:11.784 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28081 808
17-03-18 04:39:11.934 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:39:11.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:39:11.974 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:39:11.974 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:11.974 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:39:11.974 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:39:11.974 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:11.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:11.984 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:39:11.984 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:11.994 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:39:12.144 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:39:12.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:39:12.144 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:12.144 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:39:12.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:39:12.144 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:12.144 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:12.154 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:39:12.154 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:12.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:39:12.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:39:12.334 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:39:12.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 28081 150' command took 2 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-18 04:39:12.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:39:12.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127749741247011. ------
17-03-18 04:39:12.334 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:12.334 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13353 mm
17-03-18 04:39:12.334 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:39:12.344 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:12.344 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:39:12.344 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:39:12.344 -07 000000591 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 04:39:12.344 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:12.344 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29170, sync = True, waitForSettling = False)
17-03-18 04:39:12.344 -07 000000502 INF: Z Motor: Moving to -0.133532 mm, started at -0.127750 mm, distance = -5.78 um
17-03-18 04:39:12.344 -07 000000581 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:39:12.354 -07 000000502 INF: FPGA: Xmit ZDACW 29170\n [Z Motor]
17-03-18 04:39:12.354 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:39:12.464 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:39:12.464 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:39:12.464 -07 000000502 INF: FPGA: 'ZDACW 29170' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-18 04:39:12.464 -07 000000591 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:12.474 -07 000000591 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:39:12.474 -07 000000591 INF: Y Motor: Moving 1354 steps-33
17-03-18 04:39:12.474 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:39:12.484 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:12.484 -07 000000581 INF: FPGA: Recv ZDACR 29170
17-03-18 04:39:12.494 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:39:12.494 -07 000000502 INF: Z Motor: MoveAbsStepped took 148 ms (did NOT wait for settling yet))
17-03-18 04:39:12.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:39:12.544 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:39:12.544 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:12.544 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:39:12.544 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:39:12.544 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:12.544 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:12.554 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:12.554 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:39:12.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:39:12.674 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:39:12.674 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 330 ms overall
17-03-18 04:39:12.844 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:39:12.844 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 04:39:12.884 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:12.894 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:39:12.894 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:39:12.894 -07 000000591 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:12.894 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:39:12.894 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-18 04:39:13.844 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:13.844 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:39:13.854 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.854 -07 000000591 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:13.874 -07 000000591 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:39:13.874 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:39:13.874 -07 000000591 INF: Y Motor: Moved to 74.0083 after 1532 ms (table move)
17-03-18 04:39:13.874 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133532 mm (DAC = 29170)
17-03-18 04:39:13.874 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.884 -07 000000512 INF: FPGA: Recv ZSGSRD 30085
17-03-18 04:39:13.884 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:39:13.884 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.884 -07 000000502 INF: FPGA: Recv ZSGSRD 30078
17-03-18 04:39:13.894 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.894 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.894 -07 000000591 INF: FPGA: Recv ZSGSRD 30074
17-03-18 04:39:13.904 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.904 -07 000000502 INF: FPGA: Recv ZSGSRD 30079
17-03-18 04:39:13.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30076
17-03-18 04:39:13.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.924 -07 000000502 INF: FPGA: Recv ZSGSRD 30077
17-03-18 04:39:13.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.934 -07 000000382 INF: FPGA: Recv ZSGSRD 30077
17-03-18 04:39:13.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.944 -07 000000590 INF: FPGA: Recv ZSGSRD 30070
17-03-18 04:39:13.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.954 -07 000000512 INF: FPGA: Recv ZSGSRD 30072
17-03-18 04:39:13.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:13.964 -07 000000590 INF: FPGA: Recv ZSGSRD 30075
17-03-18 04:39:13.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:13.974 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:13.974 -07 000000382 INF: FPGA: Recv ZPIEZORD 25813
17-03-18 04:39:13.984 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:13.984 -07 000000606 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -9.4 V.
17-03-18 04:39:13.984 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30076 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30076 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30070 (-132.7 uncal um), Max = 30085 (-132.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:39:13.984 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30076, posNoise = 9, negNoise = 6
17-03-18 04:39:13.984 -07 000000606 INF: Z Motor: After move to -0.133532, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:13.984 -07 000000606 INF: Z Motor: Settle wait time = 1535 ms, measure time = 103 ms (allowed 150 ms), total time = 1638 ms
17-03-18 04:39:13.984 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:39:14.034 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1691 ms
17-03-18 04:39:14.034 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:39:14.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:14.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:14.034 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:14.034 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:14.034 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:39:14.034 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:14.034 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:39:14.034 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:39:14.034 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:14.034 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:39:14.044 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:39:14.044 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:39:14.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:39:14.094 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:39:14.394 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:39:14.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:39:14.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:39:14.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:39:14.434 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:39:14.434 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:39:14.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:39:14.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:39:14.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:14.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:39:14.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:39:14.534 -07 000000502 INF: Autofocus start
17-03-18 04:39:14.534 -07 000000502 INF: MeasureProfile start
17-03-18 04:39:14.534 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:14.534 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:14.544 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:39:14.544 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:39:14.544 -07 000000502 INF: MeasureProfile done
17-03-18 04:39:14.544 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:39:14.544 -07 000000502 INF: Autofocus finished
17-03-18 04:39:14.744 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:39:14.744 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:39:14.744 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133537956386738. ----------
17-03-18 04:39:14.754 -07 000000610 INF: Cycle	127	Tile	18	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:39:14.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27711, sync = True, waitForSettling = True)
17-03-18 04:39:14.754 -07 000000610 INF: Z Motor: Moving to -0.126853 mm, started at -0.133538 mm, distance = 6.69 um
17-03-18 04:39:14.754 -07 000000610 INF: FPGA: Xmit ZDACW 27711\n [Z Motor]
17-03-18 04:39:14.754 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:39:14.764 -07 000000610 INF: FPGA: 'ZDACW 27711' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:39:14.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:14.764 -07 000000447 INF: FPGA: Recv ZDACR 27711
17-03-18 04:39:14.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:39:14.784 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.001704,
17-03-18 04:39:14.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.924 -07 000000581 INF: FPGA: Recv ZSGSRD 29031
17-03-18 04:39:14.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:14.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.934 -07 000000382 INF: FPGA: Recv ZSGSRD 29040
17-03-18 04:39:14.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.944 -07 000000447 INF: FPGA: Recv ZSGSRD 29036
17-03-18 04:39:14.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.954 -07 000000569 INF: FPGA: Recv ZSGSRD 29037
17-03-18 04:39:14.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.964 -07 000000591 INF: FPGA: Recv ZSGSRD 29042
17-03-18 04:39:14.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.974 -07 000000447 INF: FPGA: Recv ZSGSRD 29037
17-03-18 04:39:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.984 -07 000000590 INF: FPGA: Recv ZSGSRD 29036
17-03-18 04:39:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:14.994 -07 000000618 INF: FPGA: Recv ZSGSRD 29032
17-03-18 04:39:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:15.004 -07 000000590 INF: FPGA: Recv ZSGSRD 29036
17-03-18 04:39:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:15.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:15.014 -07 000000569 INF: FPGA: Recv ZSGSRD 29036
17-03-18 04:39:15.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:15.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:15.024 -07 000000626 INF: FPGA: Recv ZPIEZORD 24403
17-03-18 04:39:15.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:15.034 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.228 V. Piezo Error = -10.2 V.
17-03-18 04:39:15.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29036 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29036 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29031 (-126.1 uncal um), Max = 29042 (-126.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:39:15.034 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29036, posNoise = 6, negNoise = 5
17-03-18 04:39:15.034 -07 000000610 INF: Z Motor: After move to -0.126853, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:15.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:39:15.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:15.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:15.034 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:15.034 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:15.034 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:39:15.034 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:39:15.034 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:39:15.034 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:15.034 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:39:15.034 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:39:15.034 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:15.034 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:39:15.044 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:39:15.044 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:39:15.044 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:15.044 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:39:15.054 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:39:15.054 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:39:15.054 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:39:15.054 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:39:15.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 27888 150\n [Camera]
17-03-18 04:39:15.254 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:39:15.674 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:39:15.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:39:15.684 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:15.684 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:39:15.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:39:15.684 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:15.684 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:15.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:39:15.684 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:15.684 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:39:15.874 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27888 808
17-03-18 04:39:16.024 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:39:16.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:39:16.074 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:39:16.074 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:16.074 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:39:16.074 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:39:16.074 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:16.084 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:16.084 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:39:16.084 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:16.094 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:39:16.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:39:16.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:39:16.224 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:16.224 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:39:16.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:39:16.224 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:16.224 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:16.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:39:16.234 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:16.234 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:39:16.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-18 04:39:16.414 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:39:16.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 27888 150' command took 2 ms to send, 1357 ms to get response, and 1361 ms overall
17-03-18 04:39:16.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:39:16.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126856775759306. ------
17-03-18 04:39:16.424 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:16.424 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13326 mm
17-03-18 04:39:16.424 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:39:16.424 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:39:16.424 -07 000000581 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 04:39:16.424 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:16.424 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29110, sync = True, waitForSettling = False)
17-03-18 04:39:16.424 -07 000000382 INF: Z Motor: Moving to -0.133257 mm, started at -0.126857 mm, distance = -6.40 um
17-03-18 04:39:16.434 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:39:16.434 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:16.434 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:39:16.444 -07 000000382 INF: FPGA: Xmit ZDACW 29110\n [Z Motor]
17-03-18 04:39:16.444 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:39:16.444 -07 000000581 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:16.444 -07 000000581 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:39:16.444 -07 000000581 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:39:16.444 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:39:16.454 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:39:16.454 -07 000000382 INF: FPGA: 'ZDACW 29110' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:39:16.464 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:39:16.474 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:16.474 -07 000000569 INF: FPGA: Recv ZDACR 29110
17-03-18 04:39:16.484 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:39:16.484 -07 000000382 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:39:16.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:39:16.624 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:39:16.624 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:16.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:39:16.634 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:39:16.634 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:16.634 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:16.634 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:16.634 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:39:16.634 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:39:16.654 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:39:16.654 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:39:16.684 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:16.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 126. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:39:16.834 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:39:16.834 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:39:16.864 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:16.874 -07 000000474 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:39:16.874 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:39:16.874 -07 000000581 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:16.874 -07 000000581 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 04:39:16.874 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 04:39:17.824 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:17.824 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:39:17.834 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:17.834 -07 000000581 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:17.854 -07 000000581 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:39:17.854 -07 000000581 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:39:17.854 -07 000000581 INF: Y Motor: Moved to 74.8320 after 1424 ms (table move)
17-03-18 04:39:17.854 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133257 mm (DAC = 29110)
17-03-18 04:39:17.854 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.854 -07 000000606 INF: FPGA: Recv ZSGSRD 30027
17-03-18 04:39:17.864 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:39:17.864 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.864 -07 000000626 INF: FPGA: Recv ZSGSRD 30031
17-03-18 04:39:17.874 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.874 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.874 -07 000000502 INF: FPGA: Recv ZSGSRD 30029
17-03-18 04:39:17.884 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.884 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.884 -07 000000581 INF: FPGA: Recv ZSGSRD 30024
17-03-18 04:39:17.894 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.894 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.894 -07 000000502 INF: FPGA: Recv ZSGSRD 30027
17-03-18 04:39:17.904 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.904 -07 000000626 INF: FPGA: Recv ZSGSRD 30037
17-03-18 04:39:17.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.914 -07 000000502 INF: FPGA: Recv ZSGSRD 30042
17-03-18 04:39:17.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.924 -07 000000581 INF: FPGA: Recv ZSGSRD 30035
17-03-18 04:39:17.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.934 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.934 -07 000000447 INF: FPGA: Recv ZSGSRD 30036
17-03-18 04:39:17.944 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:17.944 -07 000000606 INF: FPGA: Recv ZSGSRD 30032
17-03-18 04:39:17.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.954 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:17.954 -07 000000447 INF: FPGA: Recv ZPIEZORD 25749
17-03-18 04:39:17.964 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:17.964 -07 000000618 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.4 V.
17-03-18 04:39:17.964 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30032 (-132.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30024 (-132.4 uncal um), Max = 30042 (-132.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:39:17.964 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 10, negNoise = 8
17-03-18 04:39:17.964 -07 000000618 INF: Z Motor: After move to -0.133257, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:17.964 -07 000000618 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-18 04:39:17.964 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:39:18.014 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 04:39:18.014 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:39:18.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:18.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:18.014 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:18.014 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:18.014 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:39:18.014 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:18.014 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:39:18.014 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:39:18.024 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:39:18.024 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:39:18.034 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:39:18.034 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:39:18.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:39:18.084 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:39:18.384 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:39:18.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:39:18.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:39:18.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 04:39:18.414 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:39:18.424 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:39:18.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 04:39:18.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:39:18.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:18.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:39:18.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:39:18.524 -07 000000618 INF: Autofocus start
17-03-18 04:39:18.524 -07 000000618 INF: MeasureProfile start
17-03-18 04:39:18.524 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:39:18.524 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:39:18.534 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:39:18.534 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:39:18.534 -07 000000618 INF: MeasureProfile done
17-03-18 04:39:18.534 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:39:18.534 -07 000000618 INF: Autofocus finished
17-03-18 04:39:18.734 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:39:18.734 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:39:18.734 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.1332552910525. ----------
17-03-18 04:39:18.744 -07 000000610 INF: Cycle	127	Tile	19	Exposure Settings		A	423	G	203	T	203	C	423
17-03-18 04:39:18.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27617, sync = True, waitForSettling = True)
17-03-18 04:39:18.744 -07 000000610 INF: Z Motor: Moving to -0.126423 mm, started at -0.133255 mm, distance = 6.83 um
17-03-18 04:39:18.744 -07 000000610 INF: FPGA: Xmit ZDACW 27617\n [Z Motor]
17-03-18 04:39:18.744 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:39:18.754 -07 000000610 INF: FPGA: 'ZDACW 27617' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:39:18.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:39:18.754 -07 000000382 INF: FPGA: Recv ZDACR 27617
17-03-18 04:39:18.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:39:18.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.914 -07 000000447 INF: FPGA: Recv ZSGSRD 28968
17-03-18 04:39:18.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.924 -07 000000447 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:39:18.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.934 -07 000000382 INF: FPGA: Recv ZSGSRD 28972
17-03-18 04:39:18.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.944 -07 000000447 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:39:18.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.954 -07 000000382 INF: FPGA: Recv ZSGSRD 28964
17-03-18 04:39:18.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.964 -07 000000447 INF: FPGA: Recv ZSGSRD 28966
17-03-18 04:39:18.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.974 -07 000000618 INF: FPGA: Recv ZSGSRD 28973
17-03-18 04:39:18.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:39:18.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.984 -07 000000618 INF: FPGA: Recv ZSGSRD 28968
17-03-18 04:39:18.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:18.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:18.994 -07 000000618 INF: FPGA: Recv ZSGSRD 28962
17-03-18 04:39:19.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:19.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:39:19.004 -07 000000618 INF: FPGA: Recv ZSGSRD 28973
17-03-18 04:39:19.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:19.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:39:19.014 -07 000000618 INF: FPGA: Recv ZPIEZORD 24375
17-03-18 04:39:19.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:19.024 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.214 V. Piezo Error = -10.1 V.
17-03-18 04:39:19.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28968 (-125.6 uncal um), Error = 0.8 uncal um, Median = 28968 (-125.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28962 (-125.6 uncal um), Max = 28973 (-125.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:39:19.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28968, posNoise = 5, negNoise = 6
17-03-18 04:39:19.024 -07 000000610 INF: Z Motor: After move to -0.126423, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:39:19.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:39:19.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:39:19.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:39:19.024 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:39:19.024 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:39:19.024 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:39:19.024 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:39:19.024 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:39:19.024 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:39:19.024 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:39:19.024 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:39:19.024 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:39:19.024 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:39:19.034 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:39:19.034 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:39:19.034 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:39:19.034 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:39:19.044 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:39:19.044 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:39:19.044 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:39:19.044 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:39:19.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 423 423 203 203 27794 150\n [Camera]
17-03-18 04:39:19.254 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:39:19.674 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-18 04:39:19.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-18 04:39:19.674 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:19.674 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:19.674 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:39:19.674 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-18 04:39:19.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-18 04:39:19.674 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:19.674 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:19.674 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:39:19.864 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27794 808
17-03-18 04:39:20.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-18 04:39:20.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:39:20.054 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:39:20.054 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:20.054 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:39:20.054 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:39:20.054 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:20.064 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:20.064 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:39:20.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:39:20.064 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:39:20.154 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.018051,
17-03-18 04:39:20.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-18 04:39:20.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-18 04:39:20.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:39:20.224 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:39:20.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:39:20.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-18 04:39:20.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-18 04:39:20.224 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:39:20.224 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:39:20.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:39:20.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-18 04:39:20.414 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:39:20.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 423 423 203 203 27794 150' command took 2 ms to send, 1352 ms to get response, and 1361 ms overall
17-03-18 04:39:20.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:39:20.604 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:39:20.604 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:20.604 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:39:20.604 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:39:20.604 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:39:20.604 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:39:20.614 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:39:20.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:39:20.614 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:39:20.614 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:39:20.654 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 04:39:20.654 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:39:20.704 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 04:39:20.714 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 04:39:20.714 -07 000000610 INF: Imaging Cycle 127: ScanTilesCommand Cycle 127 time end. Duration was 168037 ms.
17-03-18 04:39:20.714 -07 000000610 INF: =================== Cycle #127 ===================
17-03-18 04:39:20.714 -07 000000610 INF: ===================  ===================
17-03-18 04:39:20.714 -07 000000591 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:39:20.724 -07 000000447 INF: FPGA: Recv EXLED1ADCR 23
17-03-18 04:39:20.724 -07 000000591 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:39:20.724 -07 000000591 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-18 04:39:20.724 -07 000000591 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 127, FrontChillerTemperature: 4.018051, FrontChillerHeatSinkTemperature: 0.427516, AmbientTemperature: 18.6308, FlowCellCompartmentTemperature: 21.98528, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.33056, GreenLEDSensorTemperature: 27.25082, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-18 04:39:20.824 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.