17-03-18 04:39:20.874 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:39:20.874 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:39:20.874 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 04:39:20.874 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:20.884 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:39:20.884 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:39:20.884 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:20.884 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:39:20.884 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:39:20.884 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:39:20.994 -07 000000512 INF: FPGA: Recv YMVTO 154377 872
17-03-18 04:39:20.994 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 115 ms overall
17-03-18 04:39:21.014 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 04:39:21.014 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 04:39:21.014 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 132 ms, distance = 0.549 mm, average velocity = 4.156 mm/sec
17-03-18 04:39:21.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:21.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:39:24.014 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:39:24.014 -07 000000447 INF: FPGA: Recv YRDPOS 154380
17-03-18 04:39:24.024 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:24.024 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:39:24.044 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:39:24.044 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 04:39:24.044 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3164 ms
17-03-18 04:39:24.044 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 60° ===================
17-03-18 04:39:24.044 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:39:24.054 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:39:24.054 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:39:24.064 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:39:24.064 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:39:24.064 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 04:39:24.074 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:39:24.074 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 60° ===================
17-03-18 04:39:24.074 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:39:24.074 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:39:24.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:24.104 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:39:24.104 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:39:24.104 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:39:24.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:39:24.424 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:39:24.424 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:39:24.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:24.494 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:39:24.494 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:39:24.594 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:39:24.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:39:24.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:24.624 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:39:24.624 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:39:24.624 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:39:24.754 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:39:24.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:25.524 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.98264,
17-03-18 04:39:26.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:26.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1782, R2=1850, Total=3632. Warn if over 250 bubbles per interval.
17-03-18 04:39:27.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:27.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:28.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:28.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:28.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:28.854 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:28.854 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:39:28.854 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:39:28.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:29.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:39:29.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:39:29.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:29.174 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:39:29.174 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:39:29.174 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:39:29.304 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:39:29.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:29.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:29.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:29.794 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:39:29.794 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:39:30.884 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.98264,
17-03-18 04:39:31.014 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:39:31.014 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:39:31.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:31.034 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:39:31.034 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:39:31.034 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:39:31.174 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:39:31.194 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:39:31.194 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:39:31.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:31.264 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:39:31.264 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:39:31.364 -07 000000610 INF: =================== Cycle #128, Pumping Reagent CMS (4) ===================
17-03-18 04:39:31.364 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:39:31.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:31.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:39:31.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:39:31.394 -07 000000610 INF: =================== Cycle #128, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:39:31.524 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:39:31.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:31.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:39:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1784, R2=1852, Total=3636. Warn if over 250 bubbles per interval.
17-03-18 04:39:33.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:33.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:33.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:33.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:33.484 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:39:33.484 -07 000000610 INF: =================== Cycle #128, Pumping Reagent CMS (4) ===================
17-03-18 04:39:33.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:33.644 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:39:33.644 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:39:33.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:33.804 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:39:33.804 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:39:33.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:39:33.934 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:39:33.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:34.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:34.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:34.424 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:39:34.424 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:39:35.644 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:39:35.644 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:39:35.644 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:35.664 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:39:35.664 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:39:35.664 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:39:35.814 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:39:35.834 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:39:35.834 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:39:35.884 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:35.904 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:39:35.904 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:39:36.004 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:39:36.004 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:39:36.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:36.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:39:36.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:39:36.034 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:39:36.164 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:39:36.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:36.244 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.979922,
17-03-18 04:39:36.694 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:39:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1785, R2=1853, Total=3638. Warn if over 250 bubbles per interval.
17-03-18 04:39:37.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:37.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:37.104 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:39:37.104 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:39:37.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:37.264 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:39:37.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:39:37.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:37.424 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:39:37.424 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:39:37.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:39:37.554 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:39:37.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:38.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:38.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:38.044 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:39:38.044 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:39:38.044 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:39:38.044 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:39:38.044 -07 000000502 INF: WaitCommand(10000) start
17-03-18 04:39:39.264 -07 000000626 INF: AsyncDelayTimer waited 1214ms
17-03-18 04:39:39.264 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 04:39:39.294 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:39:39.294 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:39:39.424 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:39:39.464 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:40.994 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:41.024 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:41.444 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:41.474 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:41.474 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:39:41.474 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:39:41.474 -07 000000626 INF: ===================  ===================
17-03-18 04:39:41.604 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.993549,
17-03-18 04:39:41.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:41.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1785, R2=1853, Total=3638. Warn if over 250 bubbles per interval.
17-03-18 04:39:46.694 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:46.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1785, R2=1853, Total=3638. Warn if over 250 bubbles per interval.
17-03-18 04:39:46.964 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.004458,
17-03-18 04:39:48.054 -07 000000502 INF: WaitCommand(10000) end
17-03-18 04:39:48.054 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:39:48.054 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:39:48.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:48.084 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:39:48.084 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:39:48.084 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:39:48.214 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:39:48.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:51.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:39:51.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1786, R2=1854, Total=3640. Warn if over 250 bubbles per interval.
17-03-18 04:39:52.324 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.007176,
17-03-18 04:39:54.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:54.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:54.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:54.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:55.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:55.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:55.734 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:55.764 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:39:56.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:56.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:56.214 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:39:56.214 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:39:56.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:56.374 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:39:56.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:39:56.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:56.534 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:39:56.534 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:39:56.534 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:39:56.664 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:39:56.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:56.694 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:39:56.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1786, R2=1854, Total=3640. Warn if over 250 bubbles per interval.
17-03-18 04:39:57.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:39:57.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:39:57.154 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:39:57.154 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:39:57.684 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.988112,
17-03-18 04:39:58.374 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:39:58.374 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:39:58.374 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:58.394 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:39:58.394 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:39:58.394 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:39:58.604 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:39:58.624 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:39:58.624 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:39:58.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:39:58.694 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:39:58.694 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:39:58.794 -07 000000610 INF: =================== Cycle #128, Pumping Reagent IMT (1) ===================
17-03-18 04:39:58.794 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:39:58.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:39:58.824 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:39:58.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:39:58.824 -07 000000610 INF: =================== Cycle #128, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:39:58.954 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:39:58.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:40:00.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:00.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:40:00.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:00.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:00.914 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:40:00.914 -07 000000610 INF: =================== Cycle #128, Pumping Reagent IMT (1) ===================
17-03-18 04:40:01.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:01.074 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:40:01.074 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:40:01.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:01.234 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:40:01.234 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:40:01.234 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:40:01.364 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:40:01.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:01.694 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:40:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1786, R2=1855, Total=3641. Warn if over 250 bubbles per interval.
17-03-18 04:40:01.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:01.854 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:01.854 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:40:01.854 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:40:03.044 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.000345,
17-03-18 04:40:03.074 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:40:03.074 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:40:03.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:40:03.094 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:40:03.094 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:40:03.094 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:40:03.324 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:40:03.344 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:40:03.344 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:40:03.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:40:03.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:40:03.414 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:40:03.514 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:40:03.514 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:40:03.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:03.544 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:40:03.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:40:03.544 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:40:03.674 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:40:03.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:40:04.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:04.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:04.614 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 04:40:04.614 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:40:04.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:04.774 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:40:04.774 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:40:04.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:04.934 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:40:04.934 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:40:04.934 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:40:05.064 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:40:05.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:05.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:05.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:05.554 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:40:05.554 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:40:05.554 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 65° ===================
17-03-18 04:40:05.554 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:40:05.554 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:40:05.554 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:40:05.564 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:40:05.564 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:40:05.564 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 04:40:05.574 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:40:05.574 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 65° ===================
17-03-18 04:40:05.574 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:40:05.574 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:40:06.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:40:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1855, Total=3642. Warn if over 250 bubbles per interval.
17-03-18 04:40:08.404 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.986717,
17-03-18 04:40:11.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1855, Total=3642. Warn if over 250 bubbles per interval.
17-03-18 04:40:13.764 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.994908,
17-03-18 04:40:16.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:40:16.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:19.124 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.007176,
17-03-18 04:40:21.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:21.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:24.484 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.024884,
17-03-18 04:40:26.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:26.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:29.844 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.989471,
17-03-18 04:40:31.694 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:35.204 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.994908,
17-03-18 04:40:35.584 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:40:35.584 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:40:35.584 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:40:35.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:35.714 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:40:35.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:40:35.714 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:40:35.844 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:40:35.884 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:40:36.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:36.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:36.454 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 04:40:36.454 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:40:36.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:36.614 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:40:36.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:40:36.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:36.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:40:36.774 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:40:36.774 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:40:36.774 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:40:36.904 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:40:36.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:37.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:37.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:37.394 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:40:37.394 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:40:37.394 -07 000000382 INF: WaitCommand(30000) start
17-03-18 04:40:37.394 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:40:37.394 -07 000000606 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:40:38.614 -07 000000606 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:40:38.614 -07 000000606 INF: LanePump: Xmit /1?\r
17-03-18 04:40:38.644 -07 000000606 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:40:38.644 -07 000000606 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:40:38.774 -07 000000606 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:40:38.814 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:40:40.564 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.974486,
17-03-18 04:40:41.154 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:41.184 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:40:41.604 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 04:40:41.634 -07 000000606 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:40:41.634 -07 000000606 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:40:41.634 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:40:41.634 -07 000000606 INF: ===================  ===================
17-03-18 04:40:41.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:41.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:45.924 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.019446,
17-03-18 04:40:46.694 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:46.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:51.284 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.015368,
17-03-18 04:40:51.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:51.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:40:56.644 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.030322,
17-03-18 04:40:56.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:40:56.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:41:01.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:41:02.004 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.988112,
17-03-18 04:41:06.694 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1787, R2=1856, Total=3643. Warn if over 250 bubbles per interval.
17-03-18 04:41:07.364 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.996267,
17-03-18 04:41:07.404 -07 000000382 INF: WaitCommand(30000) end
17-03-18 04:41:07.404 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 22° ===================
17-03-18 04:41:07.404 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:41:07.404 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:41:07.774 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:41:07.774 -07 000000474 INF: FPGA: Recv TEC2EN 
17-03-18 04:41:07.784 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:07.784 -07 000000610 INF: =================== Cycle #128, Flow Cell Temp 22° ===================
17-03-18 04:41:07.784 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:41:07.784 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:41:07.784 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:41:07.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:07.824 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:41:07.824 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:41:07.824 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:41:07.954 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:41:07.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:11.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:11.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:11.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:11.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:11.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-18 04:41:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1791, R2=1859, Total=3650. Warn if over 250 bubbles per interval.
17-03-18 04:41:12.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:12.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:12.054 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:41:12.054 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:41:12.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:12.214 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:41:12.214 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:41:12.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:12.374 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:41:12.374 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:41:12.374 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:41:12.504 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:41:12.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:12.724 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.023489,
17-03-18 04:41:12.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:12.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:12.994 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:41:12.994 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:41:14.214 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:41:14.214 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:41:14.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:41:14.234 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:41:14.234 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:41:14.234 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:41:14.384 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:41:14.404 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:41:14.404 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:41:14.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:41:14.474 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:41:14.474 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:41:14.574 -07 000000610 INF: =================== Cycle #128, Pumping Reagent USM (2) ===================
17-03-18 04:41:14.574 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:41:14.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:14.604 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:41:14.604 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:41:14.604 -07 000000610 INF: =================== Cycle #128, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:41:14.734 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:41:14.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:16.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:16.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:16.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:16.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:16.694 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:41:16.694 -07 000000610 INF: =================== Cycle #128, Pumping Reagent USM (2) ===================
17-03-18 04:41:16.694 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:41:16.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1791, R2=1860, Total=3651. Warn if over 250 bubbles per interval.
17-03-18 04:41:16.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:16.854 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:41:16.854 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:41:16.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:17.014 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:41:17.014 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:41:17.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:41:17.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:41:17.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:17.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:17.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:17.634 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:41:17.634 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:41:18.084 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.02213,
17-03-18 04:41:18.854 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:41:18.854 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:41:18.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:41:18.874 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:41:18.874 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:41:18.874 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:41:19.024 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:41:19.044 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:41:19.044 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:41:19.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:41:19.114 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:41:19.114 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:41:19.214 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:41:19.214 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:41:19.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:19.244 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:41:19.244 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:41:19.244 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:41:19.374 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:41:19.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:20.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:20.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:20.314 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:41:20.314 -07 000000610 INF: =================== Cycle #128, Pumping Reagent PR2 (3) ===================
17-03-18 04:41:20.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:20.474 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:41:20.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:41:20.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:41:20.634 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:41:20.634 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:41:20.634 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:41:20.764 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:41:20.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:21.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:21.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:21.254 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:41:21.254 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:41:21.254 -07 000000591 INF: WaitCommand(10000) start
17-03-18 04:41:21.254 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:41:21.254 -07 000000606 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:41:21.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:41:21.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:22.474 -07 000000606 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:41:22.474 -07 000000606 INF: LanePump: Xmit /1?\r
17-03-18 04:41:22.504 -07 000000606 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:41:22.504 -07 000000606 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:41:22.634 -07 000000606 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:41:22.674 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:23.444 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.039839,
17-03-18 04:41:24.204 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:24.234 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:41:24.654 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 04:41:24.684 -07 000000606 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:41:24.684 -07 000000606 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:41:24.684 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:41:24.684 -07 000000606 INF: ===================  ===================
17-03-18 04:41:26.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:26.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:28.804 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.016692,
17-03-18 04:41:31.264 -07 000000591 INF: WaitCommand(10000) end
17-03-18 04:41:31.264 -07 000000610 INF: =================== Cycle #128, Imaging ===================
17-03-18 04:41:31.264 -07 000000610 INF: Imaging Cycle 128: ScanTilesCommand Cycle 128 time start.
17-03-18 04:41:31.264 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:41:31.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:41:31.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:41:31.294 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:41:31.294 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:41:31.594 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:41:31.614 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:41:31.614 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:41:31.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:41:31.684 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:41:31.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:31.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:31.684 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:41:31.684 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:31.684 -07 000000581 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:41:31.694 -07 000000626 INF: FPGA: Recv EXLED1ON 
17-03-18 04:41:31.694 -07 000000581 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:41:31.694 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:41:31.694 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:31.694 -07 000000467 INF: FPGA: Recv EXLED1ADCR 23100
17-03-18 04:41:31.704 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:31.704 -07 000000581 INF: RedLED: Using Red data: Photodiode ADC 23100 --> 7.4 mW (old method), or 204.8 mW (new method). Difference = 197.4 mW
17-03-18 04:41:31.704 -07 000000581 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:41:31.704 -07 000000447 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:41:31.714 -07 000000581 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:31.714 -07 000000581 INF: RedLED: LED was on for 19 ms
17-03-18 04:41:31.714 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 04:41:31.714 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:41:31.714 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:31.714 -07 000000581 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:41:31.714 -07 000000447 INF: FPGA: Recv EXLED2ON 
17-03-18 04:41:31.724 -07 000000581 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:41:31.724 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:41:31.724 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 04:41:31.734 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:31.734 -07 000000581 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 04:41:31.734 -07 000000581 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:41:31.734 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:41:31.744 -07 000000581 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:31.744 -07 000000581 INF: GreenLED: LED was on for 19 ms
17-03-18 04:41:31.744 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:41:31.744 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:41:31.744 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 04:41:31.754 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:41:31.754 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:41:32.254 -07 000000467 INF: FPGA: Recv EMOUT
17-03-18 04:41:32.254 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 495 ms to get response, and 502 ms overall
17-03-18 04:41:32.254 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:41:32.254 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 04:41:32.264 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:41:32.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:41:32.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126419929333666. ------
17-03-18 04:41:32.264 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:32.264 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17837 mm
17-03-18 04:41:32.264 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:41:32.264 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:41:32.264 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 04:41:32.264 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:32.264 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38964, sync = True, waitForSettling = False)
17-03-18 04:41:32.264 -07 000000581 INF: Z Motor: Moving to -0.178366 mm, started at -0.126420 mm, distance = -51.95 um
17-03-18 04:41:32.274 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:41:32.274 -07 000000581 INF: FPGA: Xmit ZDACW 38964\n [Z Motor]
17-03-18 04:41:32.274 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:41:32.284 -07 000000581 INF: FPGA: 'ZDACW 38964' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:32.284 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:41:32.294 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:32.294 -07 000000512 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:41:32.304 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:32.304 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:41:32.304 -07 000000382 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:32.304 -07 000000618 INF: FPGA: Recv ZDACR 38964
17-03-18 04:41:32.304 -07 000000382 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:41:32.304 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:41:32.314 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:41:32.314 -07 000000581 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:41:32.314 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:41:32.484 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:41:32.484 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:41:33.994 -07 000000447 INF: FPGA: Recv YMVTO 122701 24781
17-03-18 04:41:33.994 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1691 ms overall
17-03-18 04:41:33.994 -07 000000382 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:41:33.994 -07 000000382 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24781 steps (15.488 mm). Slippage = 0.019 mm (0.00%).
17-03-18 04:41:33.994 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1691 ms, distance = 15.468 mm, average velocity = 9.147 mm/sec
17-03-18 04:41:34.164 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.005817,
17-03-18 04:41:36.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:36.844 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:36.844 -07 000000467 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:41:36.854 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:36.854 -07 000000382 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:36.884 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:41:36.884 -07 000000382 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:41:36.884 -07 000000382 INF: Y Motor: Moved to 59.9097 after 4611 ms
17-03-18 04:41:36.884 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178366 mm (DAC = 38964)
17-03-18 04:41:36.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.884 -07 000000606 INF: FPGA: Recv ZSGSRD 37061
17-03-18 04:41:36.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:41:36.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.894 -07 000000606 INF: FPGA: Recv ZSGSRD 37060
17-03-18 04:41:36.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.904 -07 000000606 INF: FPGA: Recv ZSGSRD 37058
17-03-18 04:41:36.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.914 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.914 -07 000000591 INF: FPGA: Recv ZSGSRD 37055
17-03-18 04:41:36.924 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.924 -07 000000591 INF: FPGA: Recv ZSGSRD 37054
17-03-18 04:41:36.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.934 -07 000000467 INF: FPGA: Recv ZSGSRD 37052
17-03-18 04:41:36.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.944 -07 000000512 INF: FPGA: Recv ZSGSRD 37056
17-03-18 04:41:36.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.954 -07 000000467 INF: FPGA: Recv ZSGSRD 37055
17-03-18 04:41:36.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.964 -07 000000467 INF: FPGA: Recv ZSGSRD 37057
17-03-18 04:41:36.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:36.974 -07 000000467 INF: FPGA: Recv ZSGSRD 37056
17-03-18 04:41:36.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.984 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:36.984 -07 000000467 INF: FPGA: Recv ZPIEZORD 33257
17-03-18 04:41:36.994 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:36.994 -07 000000474 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -8.4 V.
17-03-18 04:41:36.994 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37056 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37056 (-177.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37052 (-177.5 uncal um), Max = 37061 (-177.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:41:36.994 -07 000000474 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37056, posNoise = 5, negNoise = 4
17-03-18 04:41:36.994 -07 000000474 INF: Z Motor: After move to -0.178366, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:36.994 -07 000000474 INF: Z Motor: Settle wait time = 4615 ms, measure time = 105 ms (allowed 150 ms), total time = 4720 ms
17-03-18 04:41:36.994 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:41:37.044 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 04:41:37.044 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:41:37.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:37.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:37.044 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:37.044 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:37.044 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:41:37.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:37.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:37.044 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:41:37.074 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:41:37.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:41:37.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:41:37.074 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:41:37.084 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:41:37.084 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:41:37.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:41:37.134 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:41:37.434 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:41:37.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:41:37.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:41:37.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576631560, 0x0, 559484976) start.
17-03-18 04:41:37.474 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:41:37.474 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:41:37.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 04:41:37.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576631560, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:41:37.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:37.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:41:37.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:41:37.674 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:37.674 -07 000000591 INF: Image SNR check: start
17-03-18 04:41:37.674 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:37.684 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:41:37.684 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:41:37.684 -07 000000591 INF: Image SNR check: pass  [peak (Max-Min)=134.84]
17-03-18 04:41:37.684 -07 000000591 INF: Autofocus start
17-03-18 04:41:37.684 -07 000000591 INF: MeasureProfile start
17-03-18 04:41:37.694 -07 000000591 INF: MeasureProfile done
17-03-18 04:41:37.694 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:41:37.694 -07 000000591 INF: Autofocus finished
17-03-18 04:41:37.884 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:41:37.884 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:41:37.884 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178378957136229. ----------
17-03-18 04:41:37.884 -07 000000610 INF: Cycle	128	Tile	1	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:41:37.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37497, sync = True, waitForSettling = True)
17-03-18 04:41:37.894 -07 000000610 INF: Z Motor: Moving to -0.171650 mm, started at -0.178379 mm, distance = 6.73 um
17-03-18 04:41:37.894 -07 000000610 INF: FPGA: Xmit ZDACW 37497\n [Z Motor]
17-03-18 04:41:37.894 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:41:37.904 -07 000000610 INF: FPGA: 'ZDACW 37497' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:37.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:37.904 -07 000000591 INF: FPGA: Recv ZDACR 37497
17-03-18 04:41:37.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:37.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:41:38.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.064 -07 000000591 INF: FPGA: Recv ZSGSRD 36012
17-03-18 04:41:38.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:38.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.074 -07 000000591 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:41:38.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.084 -07 000000591 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:41:38.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.094 -07 000000591 INF: FPGA: Recv ZSGSRD 36011
17-03-18 04:41:38.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.104 -07 000000591 INF: FPGA: Recv ZSGSRD 36006
17-03-18 04:41:38.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.114 -07 000000467 INF: FPGA: Recv ZSGSRD 36008
17-03-18 04:41:38.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.124 -07 000000512 INF: FPGA: Recv ZSGSRD 36014
17-03-18 04:41:38.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.134 -07 000000512 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:41:38.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.144 -07 000000512 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:41:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:38.154 -07 000000626 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:41:38.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:38.164 -07 000000474 INF: FPGA: Recv ZPIEZORD 31864
17-03-18 04:41:38.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:38.174 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 04:41:38.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36010 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36006 (-170.8 uncal um), Max = 36014 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:41:38.174 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36010, posNoise = 4, negNoise = 4
17-03-18 04:41:38.174 -07 000000610 INF: Z Motor: After move to -0.171650, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:38.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:41:38.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:38.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:38.174 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:38.174 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:38.174 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:41:38.174 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:38.174 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:41:38.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:41:38.174 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:41:38.174 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:41:38.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:41:38.174 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:41:38.174 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:38.174 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:41:38.194 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:41:38.194 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:41:38.194 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:41:38.194 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:41:38.204 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:41:38.204 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:41:38.214 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:41:38.214 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 04:41:38.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37674 150\n [Camera]
17-03-18 04:41:38.414 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:41:38.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:41:38.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:41:38.844 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:38.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:41:38.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:41:38.844 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:38.854 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:38.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:41:38.854 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:38.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:41:39.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37674 810
17-03-18 04:41:39.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:41:39.244 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:41:39.244 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:41:39.244 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:39.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:41:39.254 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:41:39.254 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:39.254 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:39.254 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:41:39.254 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:39.264 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:41:39.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:41:39.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:41:39.394 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:39.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:41:39.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:41:39.394 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:39.524 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:39.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:41:39.524 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:39.524 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:41:39.534 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.000345,
17-03-18 04:41:39.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:41:39.584 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:41:39.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37674 150' command took 2 ms to send, 1351 ms to get response, and 1363 ms overall
17-03-18 04:41:39.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:41:39.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171659231235947. ------
17-03-18 04:41:39.584 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:39.584 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17792 mm
17-03-18 04:41:39.584 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:41:39.584 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:41:39.584 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 04:41:39.584 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:39.594 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:41:39.594 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:39.594 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38866, sync = True, waitForSettling = False)
17-03-18 04:41:39.594 -07 000000618 INF: Z Motor: Moving to -0.177917 mm, started at -0.171659 mm, distance = -6.26 um
17-03-18 04:41:39.594 -07 000000447 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:41:39.604 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:39.604 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:41:39.604 -07 000000512 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:39.604 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:41:39.604 -07 000000512 INF: Y Motor: Moving 1333 steps0
17-03-18 04:41:39.614 -07 000000618 INF: FPGA: Xmit ZDACW 38866\n [Z Motor]
17-03-18 04:41:39.614 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:41:39.624 -07 000000618 INF: FPGA: 'ZDACW 38866' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:41:39.624 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:41:39.634 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:39.634 -07 000000467 INF: FPGA: Recv ZDACR 38866
17-03-18 04:41:39.644 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:41:39.644 -07 000000618 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:41:39.804 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:41:39.804 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:41:39.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:41:39.904 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:41:39.904 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:39.914 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:39.914 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:41:39.914 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:41:39.914 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:39.914 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:39.914 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 04:41:39.914 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-18 04:41:39.994 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:41:39.994 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:41:40.034 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:40.044 -07 000000581 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:41:40.044 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:41:40.044 -07 000000512 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:40.044 -07 000000512 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:41:40.044 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.833 mm, average velocity = 2.109 mm/sec
17-03-18 04:41:40.994 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:40.994 -07 000000502 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:41:41.004 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:41.004 -07 000000512 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:41.034 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:41:41.034 -07 000000512 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:41:41.034 -07 000000512 INF: Y Motor: Moved to 60.7319 after 1443 ms (table move)
17-03-18 04:41:41.034 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177917 mm (DAC = 38866)
17-03-18 04:41:41.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.034 -07 000000618 INF: FPGA: Recv ZSGSRD 36990
17-03-18 04:41:41.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:41:41.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.044 -07 000000512 INF: FPGA: Recv ZSGSRD 36989
17-03-18 04:41:41.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.054 -07 000000512 INF: FPGA: Recv ZSGSRD 36991
17-03-18 04:41:41.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.064 -07 000000512 INF: FPGA: Recv ZSGSRD 36985
17-03-18 04:41:41.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.074 -07 000000512 INF: FPGA: Recv ZSGSRD 36984
17-03-18 04:41:41.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.084 -07 000000512 INF: FPGA: Recv ZSGSRD 36984
17-03-18 04:41:41.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.094 -07 000000512 INF: FPGA: Recv ZSGSRD 36982
17-03-18 04:41:41.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.104 -07 000000512 INF: FPGA: Recv ZSGSRD 36984
17-03-18 04:41:41.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.114 -07 000000512 INF: FPGA: Recv ZSGSRD 36989
17-03-18 04:41:41.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:41.124 -07 000000591 INF: FPGA: Recv ZSGSRD 36994
17-03-18 04:41:41.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.134 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:41.134 -07 000000591 INF: FPGA: Recv ZPIEZORD 33159
17-03-18 04:41:41.144 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.144 -07 000000626 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.5 V.
17-03-18 04:41:41.144 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36987 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36987 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36982 (-177.0 uncal um), Max = 36994 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:41:41.144 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36987, posNoise = 7, negNoise = 5
17-03-18 04:41:41.144 -07 000000626 INF: Z Motor: After move to -0.177917, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:41.144 -07 000000626 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-18 04:41:41.144 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:41:41.194 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 04:41:41.194 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:41:41.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:41.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:41.194 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:41.194 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:41.194 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:41:41.194 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:41.194 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:41.194 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:41:41.204 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:41.204 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:41:41.214 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:41:41.214 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:41:41.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:41:41.264 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:41:41.564 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:41:41.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:41:41.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:41:41.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576631560, 0x0, 559484976) start.
17-03-18 04:41:41.604 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:41:41.604 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:41:41.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 04:41:41.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576631560, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 04:41:41.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:41.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:41:41.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:41:41.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:41.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:41.704 -07 000000474 INF: Autofocus start
17-03-18 04:41:41.704 -07 000000474 INF: MeasureProfile start
17-03-18 04:41:41.704 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:41.704 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:41.714 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:41:41.714 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:41:41.714 -07 000000474 INF: MeasureProfile done
17-03-18 04:41:41.714 -07 000000474 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:41:41.714 -07 000000474 INF: Autofocus finished
17-03-18 04:41:41.914 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:41:41.914 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:41:41.914 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177935686498447. ----------
17-03-18 04:41:41.924 -07 000000610 INF: Cycle	128	Tile	2	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:41:41.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37346, sync = True, waitForSettling = True)
17-03-18 04:41:41.924 -07 000000610 INF: Z Motor: Moving to -0.170959 mm, started at -0.177936 mm, distance = 6.98 um
17-03-18 04:41:41.924 -07 000000610 INF: FPGA: Xmit ZDACW 37346\n [Z Motor]
17-03-18 04:41:41.924 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:41:41.934 -07 000000610 INF: FPGA: 'ZDACW 37346' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:41:41.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:41.934 -07 000000618 INF: FPGA: Recv ZDACR 37346
17-03-18 04:41:41.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:41.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:41:42.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.094 -07 000000474 INF: FPGA: Recv ZSGSRD 35899
17-03-18 04:41:42.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:41:42.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35896
17-03-18 04:41:42.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.124 -07 000000618 INF: FPGA: Recv ZSGSRD 35900
17-03-18 04:41:42.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.134 -07 000000618 INF: FPGA: Recv ZSGSRD 35901
17-03-18 04:41:42.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:41:42.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.154 -07 000000581 INF: FPGA: Recv ZSGSRD 35910
17-03-18 04:41:42.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.164 -07 000000606 INF: FPGA: Recv ZSGSRD 35910
17-03-18 04:41:42.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.174 -07 000000606 INF: FPGA: Recv ZSGSRD 35901
17-03-18 04:41:42.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:42.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:41:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:42.194 -07 000000591 INF: FPGA: Recv ZPIEZORD 31675
17-03-18 04:41:42.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:42.204 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.3 V.
17-03-18 04:41:42.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35902 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35896 (-170.0 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:41:42.204 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 7, negNoise = 7
17-03-18 04:41:42.204 -07 000000610 INF: Z Motor: After move to -0.170959, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:42.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:41:42.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:42.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:42.204 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:42.204 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:42.204 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:41:42.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:41:42.204 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:41:42.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:42.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:41:42.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:41:42.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:42.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:41:42.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:41:42.204 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:41:42.214 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:42.214 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:41:42.224 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:41:42.224 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:41:42.224 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:41:42.224 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:41:42.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37523 150\n [Camera]
17-03-18 04:41:42.434 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:41:42.854 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:41:42.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:41:42.854 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:42.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:41:42.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:41:42.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:42.854 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:42.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:41:42.864 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:42.864 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) start.
17-03-18 04:41:43.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37523 810
17-03-18 04:41:43.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:41:43.254 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:41:43.254 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:41:43.254 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:43.254 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:41:43.254 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:41:43.254 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:43.264 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:43.264 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:41:43.264 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:43.274 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:41:43.404 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:41:43.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:41:43.404 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:43.404 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:43.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:41:43.404 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 04:41:43.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:41:43.404 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:43.404 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:43.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:41:43.594 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:41:43.594 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:41:43.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37523 150' command took 2 ms to send, 1354 ms to get response, and 1363 ms overall
17-03-18 04:41:43.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:41:43.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.170971840536779. ------
17-03-18 04:41:43.724 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:43.724 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17774 mm
17-03-18 04:41:43.724 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:41:43.724 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:43.724 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:41:43.724 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38828, sync = True, waitForSettling = False)
17-03-18 04:41:43.724 -07 000000447 INF: Z Motor: Moving to -0.177743 mm, started at -0.170972 mm, distance = -6.77 um
17-03-18 04:41:43.724 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:41:43.734 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:43.734 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:43.734 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:41:43.744 -07 000000447 INF: FPGA: Xmit ZDACW 38828\n [Z Motor]
17-03-18 04:41:43.744 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:41:43.744 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:43.744 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:41:43.744 -07 000000382 INF: Y Motor: Moving 1345 steps-22
17-03-18 04:41:43.744 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:41:43.754 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:41:43.754 -07 000000447 INF: FPGA: 'ZDACW 38828' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:41:43.764 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:41:43.774 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:43.774 -07 000000626 INF: FPGA: Recv ZDACR 38828
17-03-18 04:41:43.784 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:41:43.784 -07 000000447 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 04:41:43.794 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:41:43.794 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:41:43.794 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:43.804 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:41:43.804 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:41:43.804 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:43.804 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:41:43.804 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:41:43.804 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:41:43.814 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:41:43.954 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:41:43.954 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:41:44.134 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:41:44.134 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:41:44.184 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:44.184 -07 000000618 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:41:44.194 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:41:44.194 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:44.194 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:41:44.194 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 04:41:44.894 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.983999,
17-03-18 04:41:45.144 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:45.144 -07 000000626 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:41:45.154 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:45.154 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:45.184 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:41:45.184 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:41:45.184 -07 000000382 INF: Y Motor: Moved to 61.5625 after 1457 ms (table move)
17-03-18 04:41:45.184 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177743 mm (DAC = 38828)
17-03-18 04:41:45.184 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.184 -07 000000382 INF: FPGA: Recv ZSGSRD 36959
17-03-18 04:41:45.194 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:41:45.194 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.194 -07 000000618 INF: FPGA: Recv ZSGSRD 36952
17-03-18 04:41:45.204 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:45.204 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.204 -07 000000382 INF: FPGA: Recv ZSGSRD 36965
17-03-18 04:41:45.214 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:45.214 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.214 -07 000000474 INF: FPGA: Recv ZSGSRD 36958
17-03-18 04:41:45.224 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:45.224 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.224 -07 000000474 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:41:45.234 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:45.234 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.234 -07 000000474 INF: FPGA: Recv ZSGSRD 36961
17-03-18 04:41:45.244 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:45.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.254 -07 000000382 INF: FPGA: Recv ZSGSRD 36955
17-03-18 04:41:45.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:41:45.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.264 -07 000000382 INF: FPGA: Recv ZSGSRD 36958
17-03-18 04:41:45.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:45.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.284 -07 000000591 INF: FPGA: Recv ZSGSRD 36961
17-03-18 04:41:45.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:41:45.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:45.304 -07 000000581 INF: FPGA: Recv ZSGSRD 36958
17-03-18 04:41:45.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:41:45.314 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:45.314 -07 000000512 INF: FPGA: Recv ZPIEZORD 33128
17-03-18 04:41:45.324 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:45.324 -07 000000467 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.925 V. Piezo Error = -8.5 V.
17-03-18 04:41:45.324 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36959 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36958 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36952 (-176.8 uncal um), Max = 36965 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:41:45.324 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36959, posNoise = 6, negNoise = 7
17-03-18 04:41:45.324 -07 000000467 INF: Z Motor: After move to -0.177743, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:45.324 -07 000000467 INF: Z Motor: Settle wait time = 1460 ms, measure time = 136 ms (allowed 150 ms), total time = 1596 ms
17-03-18 04:41:45.324 -07 000000467 INF: Z Motor: Waiting extra 14 ms after reading position to reach expected total of 150 ms
17-03-18 04:41:45.344 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:41:45.344 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:41:45.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:45.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:45.344 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:45.344 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:45.344 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:41:45.344 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:45.344 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:45.344 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:41:45.354 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:41:45.354 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:41:45.364 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:41:45.364 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:41:45.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:41:45.414 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:41:45.714 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:41:45.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:41:45.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:41:45.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:41:45.754 -07 000000618 INF: FPGA: Recv @CAMSNAP 383
17-03-18 04:41:45.754 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:41:45.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 04:41:45.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:41:45.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:45.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:41:45.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:41:45.854 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:45.854 -07 000000606 INF: Autofocus start
17-03-18 04:41:45.854 -07 000000606 INF: MeasureProfile start
17-03-18 04:41:45.854 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:45.864 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:41:45.864 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:41:45.864 -07 000000606 INF: MeasureProfile done
17-03-18 04:41:45.864 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:41:45.864 -07 000000606 INF: Autofocus finished
17-03-18 04:41:46.064 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:41:46.064 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:41:46.064 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177755808558478. ----------
17-03-18 04:41:46.064 -07 000000610 INF: Cycle	128	Tile	3	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:41:46.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37343, sync = True, waitForSettling = True)
17-03-18 04:41:46.074 -07 000000610 INF: Z Motor: Moving to -0.170945 mm, started at -0.177756 mm, distance = 6.81 um
17-03-18 04:41:46.074 -07 000000610 INF: FPGA: Xmit ZDACW 37343\n [Z Motor]
17-03-18 04:41:46.074 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:41:46.084 -07 000000610 INF: FPGA: 'ZDACW 37343' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:46.084 -07 000000512 INF: FPGA: Recv ZDACR 37343
17-03-18 04:41:46.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:41:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.244 -07 000000581 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:41:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35897
17-03-18 04:41:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.264 -07 000000581 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:41:46.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.274 -07 000000382 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:41:46.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.284 -07 000000581 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:41:46.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:41:46.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.304 -07 000000467 INF: FPGA: Recv ZSGSRD 35897
17-03-18 04:41:46.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.314 -07 000000581 INF: FPGA: Recv ZSGSRD 35896
17-03-18 04:41:46.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.334 -07 000000467 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:41:46.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:41:46.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:46.334 -07 000000591 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:41:46.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:46.344 -07 000000467 INF: FPGA: Recv ZPIEZORD 31729
17-03-18 04:41:46.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:46.354 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.2 V.
17-03-18 04:41:46.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35901 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35902 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35896 (-170.0 uncal um), Max = 35904 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:41:46.354 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35901, posNoise = 3, negNoise = 5
17-03-18 04:41:46.354 -07 000000610 INF: Z Motor: After move to -0.170945, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:46.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:41:46.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:46.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:46.354 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:46.354 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:46.354 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:41:46.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:46.354 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:41:46.354 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:41:46.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:46.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:41:46.354 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:41:46.354 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:41:46.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:46.354 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:41:46.364 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:41:46.364 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:41:46.374 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:41:46.374 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:41:46.374 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:41:46.374 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:41:46.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37520 150\n [Camera]
17-03-18 04:41:46.574 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:41:46.694 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:46.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:47.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:41:47.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:41:47.004 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:47.004 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:41:47.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:41:47.004 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:47.004 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:47.004 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:41:47.014 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:47.014 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:41:47.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37520 810
17-03-18 04:41:47.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:41:47.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:41:47.384 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:41:47.384 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:47.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:41:47.384 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:41:47.384 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:47.384 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:41:47.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:41:47.384 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:41:47.394 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:41:47.544 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:41:47.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:41:47.544 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:47.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:41:47.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:41:47.544 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:47.544 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:47.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:41:47.554 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:47.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:41:47.734 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:41:47.734 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:41:47.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37520 150' command took 2 ms to send, 1356 ms to get response, and 1363 ms overall
17-03-18 04:41:47.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:41:47.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.170958992112495. ------
17-03-18 04:41:47.744 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17708 mm
17-03-18 04:41:47.744 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:41:47.744 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:47.744 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38684, sync = True, waitForSettling = False)
17-03-18 04:41:47.744 -07 000000382 INF: Z Motor: Moving to -0.177084 mm, started at -0.170959 mm, distance = -6.13 um
17-03-18 04:41:47.744 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:41:47.744 -07 000000467 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:41:47.744 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:47.754 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:41:47.754 -07 000000382 INF: FPGA: Xmit ZDACW 38684\n [Z Motor]
17-03-18 04:41:47.754 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:41:47.764 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:47.764 -07 000000382 INF: FPGA: 'ZDACW 38684' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:41:47.764 -07 000000606 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:41:47.774 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:41:47.774 -07 000000467 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:47.774 -07 000000467 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:41:47.774 -07 000000467 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:41:47.774 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:41:47.784 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:47.784 -07 000000447 INF: FPGA: Recv ZDACR 38684
17-03-18 04:41:47.794 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:41:47.794 -07 000000382 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:41:47.794 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:41:47.924 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:41:47.924 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:41:47.924 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:47.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:41:47.934 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:41:47.934 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:47.934 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:41:47.934 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:47.934 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:41:47.944 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:41:47.974 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:41:47.974 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:41:48.164 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:41:48.164 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:41:48.224 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:48.224 -07 000000424 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:41:48.234 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:48.234 -07 000000467 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:48.234 -07 000000467 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:41:48.234 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 04:41:49.184 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:49.184 -07 000000447 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:41:49.194 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:49.194 -07 000000467 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:49.224 -07 000000467 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:41:49.224 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:41:49.224 -07 000000467 INF: Y Motor: Moved to 62.3945 after 1474 ms (table move)
17-03-18 04:41:49.224 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177084 mm (DAC = 38684)
17-03-18 04:41:49.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.224 -07 000000606 INF: FPGA: Recv ZSGSRD 36856
17-03-18 04:41:49.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:41:49.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.234 -07 000000424 INF: FPGA: Recv ZSGSRD 36852
17-03-18 04:41:49.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36852
17-03-18 04:41:49.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.254 -07 000000618 INF: FPGA: Recv ZSGSRD 36848
17-03-18 04:41:49.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.264 -07 000000382 INF: FPGA: Recv ZSGSRD 36861
17-03-18 04:41:49.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.274 -07 000000467 INF: FPGA: Recv ZSGSRD 36856
17-03-18 04:41:49.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.284 -07 000000502 INF: FPGA: Recv ZSGSRD 36858
17-03-18 04:41:49.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.294 -07 000000626 INF: FPGA: Recv ZSGSRD 36859
17-03-18 04:41:49.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.304 -07 000000474 INF: FPGA: Recv ZSGSRD 36853
17-03-18 04:41:49.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:49.314 -07 000000626 INF: FPGA: Recv ZSGSRD 36855
17-03-18 04:41:49.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.324 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:49.324 -07 000000502 INF: FPGA: Recv ZPIEZORD 32980
17-03-18 04:41:49.334 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:49.334 -07 000000512 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.6 V.
17-03-18 04:41:49.334 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36855 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36856 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36848 (-176.2 uncal um), Max = 36861 (-176.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:41:49.334 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36855, posNoise = 6, negNoise = 7
17-03-18 04:41:49.334 -07 000000512 INF: Z Motor: After move to -0.177084, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:49.334 -07 000000512 INF: Z Motor: Settle wait time = 1478 ms, measure time = 108 ms (allowed 150 ms), total time = 1586 ms
17-03-18 04:41:49.334 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:41:49.384 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 04:41:49.384 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:41:49.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:49.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:49.384 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:41:49.384 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:49.384 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:49.384 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:49.384 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:49.384 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:41:49.394 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:49.394 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:41:49.394 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:41:49.394 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:41:49.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:41:49.444 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:41:49.744 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:41:49.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:41:49.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:41:49.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:41:49.784 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:41:49.784 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:41:49.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:41:49.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:41:49.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:49.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:41:49.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:41:49.884 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:49.884 -07 000000606 INF: Autofocus start
17-03-18 04:41:49.884 -07 000000606 INF: MeasureProfile start
17-03-18 04:41:49.884 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:49.894 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:41:49.894 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:41:49.894 -07 000000606 INF: MeasureProfile done
17-03-18 04:41:49.894 -07 000000606 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:41:49.894 -07 000000606 INF: Autofocus finished
17-03-18 04:41:50.094 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:41:50.094 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:41:50.094 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177087690495735. ----------
17-03-18 04:41:50.094 -07 000000610 INF: Cycle	128	Tile	4	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:41:50.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37216, sync = True, waitForSettling = True)
17-03-18 04:41:50.104 -07 000000610 INF: Z Motor: Moving to -0.170364 mm, started at -0.177088 mm, distance = 6.72 um
17-03-18 04:41:50.104 -07 000000610 INF: FPGA: Xmit ZDACW 37216\n [Z Motor]
17-03-18 04:41:50.104 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:41:50.114 -07 000000610 INF: FPGA: 'ZDACW 37216' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:41:50.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:50.114 -07 000000501 INF: FPGA: Recv ZDACR 37216
17-03-18 04:41:50.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:41:50.254 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.003063,
17-03-18 04:41:50.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.274 -07 000000424 INF: FPGA: Recv ZSGSRD 35814
17-03-18 04:41:50.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:50.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.304 -07 000000467 INF: FPGA: Recv ZSGSRD 35806
17-03-18 04:41:50.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:41:50.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.314 -07 000000591 INF: FPGA: Recv ZSGSRD 35807
17-03-18 04:41:50.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35818
17-03-18 04:41:50.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.334 -07 000000447 INF: FPGA: Recv ZSGSRD 35807
17-03-18 04:41:50.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.374 -07 000000474 INF: FPGA: Recv ZSGSRD 35819
17-03-18 04:41:50.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:41:50.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.384 -07 000000382 INF: FPGA: Recv ZSGSRD 35805
17-03-18 04:41:50.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.394 -07 000000606 INF: FPGA: Recv ZSGSRD 35810
17-03-18 04:41:50.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35811
17-03-18 04:41:50.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:50.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35809
17-03-18 04:41:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:50.424 -07 000000512 INF: FPGA: Recv ZPIEZORD 31603
17-03-18 04:41:50.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:50.434 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.3 V.
17-03-18 04:41:50.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35811 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35810 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35805 (-169.5 uncal um), Max = 35819 (-169.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:41:50.434 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35811, posNoise = 8, negNoise = 6
17-03-18 04:41:50.434 -07 000000610 INF: Z Motor: After move to -0.170364, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:50.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 04:41:50.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:50.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:50.434 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:41:50.434 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:50.434 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:41:50.434 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:41:50.434 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:50.434 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:50.434 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:41:50.434 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:41:50.434 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:41:50.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:41:50.434 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:50.434 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:41:50.444 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:41:50.444 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:41:50.454 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:41:50.454 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:41:50.454 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:41:50.454 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:41:50.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37393 150\n [Camera]
17-03-18 04:41:50.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:41:51.084 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:41:51.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:41:51.084 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:51.084 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:51.084 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:41:51.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:41:51.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:41:51.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:51.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:51.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:41:51.274 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37393 810
17-03-18 04:41:51.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:41:51.464 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:41:51.464 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:41:51.464 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:51.464 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:51.474 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:41:51.474 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:41:51.474 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:51.474 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:41:51.474 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:51.474 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:41:51.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:41:51.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:41:51.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:51.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:51.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:41:51.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:41:51.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:41:51.634 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:51.634 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:51.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:41:51.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:51.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:51.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:41:51.824 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:41:51.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37393 150' command took 2 ms to send, 1352 ms to get response, and 1364 ms overall
17-03-18 04:41:51.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:41:51.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170380813019737. ------
17-03-18 04:41:51.824 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:51.824 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17698 mm
17-03-18 04:41:51.824 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:41:51.824 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38661, sync = True, waitForSettling = False)
17-03-18 04:41:51.824 -07 000000626 INF: Z Motor: Moving to -0.176979 mm, started at -0.170381 mm, distance = -6.60 um
17-03-18 04:41:51.834 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:51.834 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:41:51.834 -07 000000626 INF: FPGA: Xmit ZDACW 38661\n [Z Motor]
17-03-18 04:41:51.834 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:41:51.954 -07 000000474 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:41:51.954 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:41:51.954 -07 000000626 INF: FPGA: 'ZDACW 38661' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 04:41:51.954 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:41:51.964 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:51.964 -07 000000591 INF: FPGA: Recv ZDACR 38661
17-03-18 04:41:51.974 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:51.974 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:41:51.974 -07 000000626 INF: Z Motor: MoveAbsStepped took 140 ms (did NOT wait for settling yet))
17-03-18 04:41:51.974 -07 000000591 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:41:51.984 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:41:51.984 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:51.984 -07 000000474 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:41:51.984 -07 000000474 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:41:51.984 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:41:52.034 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:41:52.034 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:41:52.034 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:52.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:41:52.034 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:41:52.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:52.044 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:52.044 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:41:52.044 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:41:52.044 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:41:52.154 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:41:52.154 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 328 ms overall
17-03-18 04:41:52.354 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:41:52.354 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 04:41:52.404 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:52.414 -07 000000591 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:41:52.414 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:41:52.414 -07 000000474 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:52.414 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:41:52.414 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-18 04:41:53.364 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:53.364 -07 000000626 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:41:53.374 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.374 -07 000000474 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:53.404 -07 000000474 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:41:53.404 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:41:53.404 -07 000000474 INF: Y Motor: Moved to 63.2227 after 1445 ms (table move)
17-03-18 04:41:53.404 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176979 mm (DAC = 38661)
17-03-18 04:41:53.404 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.404 -07 000000626 INF: FPGA: Recv ZSGSRD 36841
17-03-18 04:41:53.414 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:41:53.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.414 -07 000000467 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:41:53.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.424 -07 000000591 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:41:53.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.434 -07 000000447 INF: FPGA: Recv ZSGSRD 36843
17-03-18 04:41:53.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.444 -07 000000467 INF: FPGA: Recv ZSGSRD 36837
17-03-18 04:41:53.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.454 -07 000000467 INF: FPGA: Recv ZSGSRD 36841
17-03-18 04:41:53.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.464 -07 000000502 INF: FPGA: Recv ZSGSRD 36836
17-03-18 04:41:53.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.474 -07 000000626 INF: FPGA: Recv ZSGSRD 36835
17-03-18 04:41:53.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.484 -07 000000502 INF: FPGA: Recv ZSGSRD 36842
17-03-18 04:41:53.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:53.494 -07 000000626 INF: FPGA: Recv ZSGSRD 36838
17-03-18 04:41:53.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.504 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:53.504 -07 000000474 INF: FPGA: Recv ZPIEZORD 32994
17-03-18 04:41:53.514 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:53.514 -07 000000606 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.5 V.
17-03-18 04:41:53.514 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36838 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36838 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36835 (-176.1 uncal um), Max = 36843 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:41:53.514 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36838, posNoise = 5, negNoise = 3
17-03-18 04:41:53.514 -07 000000606 INF: Z Motor: After move to -0.176979, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:53.514 -07 000000606 INF: Z Motor: Settle wait time = 1575 ms, measure time = 105 ms (allowed 150 ms), total time = 1680 ms
17-03-18 04:41:53.514 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:41:53.564 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 04:41:53.564 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:41:53.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:53.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:53.564 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:53.564 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:53.564 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:41:53.564 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:53.564 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:53.564 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:41:53.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:41:53.574 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:41:53.574 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:41:53.574 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:41:53.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:41:53.624 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:41:53.924 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:41:53.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:41:53.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:41:53.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:41:53.964 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:41:53.964 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:41:53.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:41:54.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:41:54.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:54.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:41:54.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:41:54.064 -07 000000626 INF: Autofocus start
17-03-18 04:41:54.064 -07 000000626 INF: MeasureProfile start
17-03-18 04:41:54.064 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:54.064 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:54.074 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:41:54.074 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:41:54.074 -07 000000626 INF: MeasureProfile done
17-03-18 04:41:54.074 -07 000000626 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:41:54.074 -07 000000626 INF: Autofocus finished
17-03-18 04:41:54.274 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:41:54.274 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:41:54.274 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176978478889325. ----------
17-03-18 04:41:54.274 -07 000000610 INF: Cycle	128	Tile	5	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:41:54.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37193, sync = True, waitForSettling = True)
17-03-18 04:41:54.284 -07 000000610 INF: Z Motor: Moving to -0.170259 mm, started at -0.176978 mm, distance = 6.72 um
17-03-18 04:41:54.284 -07 000000610 INF: FPGA: Xmit ZDACW 37193\n [Z Motor]
17-03-18 04:41:54.284 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:41:54.294 -07 000000610 INF: FPGA: 'ZDACW 37193' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:41:54.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:54.294 -07 000000591 INF: FPGA: Recv ZDACR 37193
17-03-18 04:41:54.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:41:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.454 -07 000000467 INF: FPGA: Recv ZSGSRD 35790
17-03-18 04:41:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.464 -07 000000581 INF: FPGA: Recv ZSGSRD 35796
17-03-18 04:41:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.474 -07 000000606 INF: FPGA: Recv ZSGSRD 35798
17-03-18 04:41:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.484 -07 000000467 INF: FPGA: Recv ZSGSRD 35795
17-03-18 04:41:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.494 -07 000000467 INF: FPGA: Recv ZSGSRD 35791
17-03-18 04:41:54.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.504 -07 000000581 INF: FPGA: Recv ZSGSRD 35789
17-03-18 04:41:54.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35795
17-03-18 04:41:54.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.524 -07 000000606 INF: FPGA: Recv ZSGSRD 35793
17-03-18 04:41:54.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.534 -07 000000447 INF: FPGA: Recv ZSGSRD 35793
17-03-18 04:41:54.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:54.544 -07 000000606 INF: FPGA: Recv ZSGSRD 35793
17-03-18 04:41:54.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:54.554 -07 000000447 INF: FPGA: Recv ZPIEZORD 31568
17-03-18 04:41:54.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:54.564 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.675 V. Piezo Error = -9.3 V.
17-03-18 04:41:54.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35793 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35793 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35789 (-169.4 uncal um), Max = 35798 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:41:54.564 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35793, posNoise = 5, negNoise = 4
17-03-18 04:41:54.564 -07 000000610 INF: Z Motor: After move to -0.170259, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:54.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:41:54.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:54.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:54.574 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:54.574 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:41:54.574 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:54.574 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:41:54.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:41:54.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:54.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:41:54.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:41:54.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:41:54.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:41:54.584 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:41:54.584 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:41:54.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:41:54.584 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:41:54.594 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:41:54.594 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:41:54.594 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:41:54.594 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:41:54.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37370 150\n [Camera]
17-03-18 04:41:54.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:41:55.224 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:41:55.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:41:55.224 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:55.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:41:55.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:41:55.224 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:55.234 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:55.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:41:55.234 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:55.234 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:41:55.414 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37370 810
17-03-18 04:41:55.564 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:41:55.624 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.98264,
17-03-18 04:41:55.624 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:41:55.624 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:41:55.624 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:55.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:41:55.634 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:41:55.634 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:55.634 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:41:55.634 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:41:55.634 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:41:55.644 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:41:55.774 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:41:55.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:41:55.774 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:55.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:41:55.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:41:55.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:55.774 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:55.774 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:41:55.774 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:55.774 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:41:55.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:41:55.964 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:41:55.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37370 150' command took 2 ms to send, 1352 ms to get response, and 1364 ms overall
17-03-18 04:41:55.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:41:55.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170265177201185. ------
17-03-18 04:41:55.964 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:55.964 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17628 mm
17-03-18 04:41:55.964 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:41:56.084 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:56.084 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 04:41:56.084 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38508, sync = True, waitForSettling = False)
17-03-18 04:41:56.084 -07 000000626 INF: Z Motor: Moving to -0.176278 mm, started at -0.170265 mm, distance = -6.01 um
17-03-18 04:41:56.084 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:41:56.084 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 04:41:56.104 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:41:56.114 -07 000000626 INF: FPGA: Xmit ZDACW 38508\n [Z Motor]
17-03-18 04:41:56.114 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:41:56.124 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:56.124 -07 000000626 INF: FPGA: 'ZDACW 38508' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 04:41:56.124 -07 000000625 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:41:56.134 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 43 ms overall
17-03-18 04:41:56.134 -07 000000382 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:56.134 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:41:56.134 -07 000000382 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:41:56.144 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:56.144 -07 000000467 INF: FPGA: Recv ZDACR 38508
17-03-18 04:41:56.154 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:41:56.154 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:41:56.154 -07 000000626 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-18 04:41:56.164 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:41:56.164 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:41:56.164 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:56.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:41:56.164 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:41:56.174 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:56.174 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:41:56.174 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:41:56.174 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:41:56.174 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:41:56.304 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:41:56.304 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-18 04:41:56.534 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:41:56.534 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 402 ms overall
17-03-18 04:41:56.584 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:56.584 -07 000000618 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:41:56.594 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:56.594 -07 000000382 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:56.594 -07 000000382 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:41:56.594 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.840 mm, average velocity = 2.089 mm/sec
17-03-18 04:41:56.694 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:41:56.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:41:57.544 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:41:57.544 -07 000000618 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:41:57.554 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:57.554 -07 000000382 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:41:57.574 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:41:57.574 -07 000000382 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:41:57.574 -07 000000382 INF: Y Motor: Moved to 64.0557 after 1493 ms (table move)
17-03-18 04:41:57.584 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176278 mm (DAC = 38508)
17-03-18 04:41:57.584 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.584 -07 000000424 INF: FPGA: Recv ZSGSRD 36734
17-03-18 04:41:57.594 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:41:57.594 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.594 -07 000000502 INF: FPGA: Recv ZSGSRD 36731
17-03-18 04:41:57.604 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.604 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.604 -07 000000424 INF: FPGA: Recv ZSGSRD 36729
17-03-18 04:41:57.614 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.614 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.614 -07 000000618 INF: FPGA: Recv ZSGSRD 36724
17-03-18 04:41:57.624 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.624 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.624 -07 000000447 INF: FPGA: Recv ZSGSRD 36735
17-03-18 04:41:57.634 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.634 -07 000000626 INF: FPGA: Recv ZSGSRD 36731
17-03-18 04:41:57.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.644 -07 000000382 INF: FPGA: Recv ZSGSRD 36728
17-03-18 04:41:57.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.654 -07 000000618 INF: FPGA: Recv ZSGSRD 36729
17-03-18 04:41:57.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.664 -07 000000447 INF: FPGA: Recv ZSGSRD 36723
17-03-18 04:41:57.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.674 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:57.674 -07 000000618 INF: FPGA: Recv ZSGSRD 36734
17-03-18 04:41:57.684 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.684 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:57.684 -07 000000382 INF: FPGA: Recv ZPIEZORD 32842
17-03-18 04:41:57.694 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:57.694 -07 000000501 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.6 V.
17-03-18 04:41:57.694 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36730 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36730 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36723 (-175.3 uncal um), Max = 36735 (-175.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:41:57.694 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36730, posNoise = 5, negNoise = 7
17-03-18 04:41:57.694 -07 000000501 INF: Z Motor: After move to -0.176278, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:57.694 -07 000000501 INF: Z Motor: Settle wait time = 1498 ms, measure time = 106 ms (allowed 150 ms), total time = 1604 ms
17-03-18 04:41:57.694 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:41:57.744 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1772 ms
17-03-18 04:41:57.744 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:41:57.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:57.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:57.744 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:57.744 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:57.744 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:41:57.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:57.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:41:57.744 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:41:57.754 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:41:57.754 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:41:57.754 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:41:57.754 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:41:57.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:41:57.804 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:41:58.104 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:41:58.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:41:58.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:41:58.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:41:58.144 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:41:58.144 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:41:58.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:41:58.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:41:58.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:58.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:41:58.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:41:58.244 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:41:58.244 -07 000000447 INF: Autofocus start
17-03-18 04:41:58.244 -07 000000447 INF: MeasureProfile start
17-03-18 04:41:58.244 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:41:58.254 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:41:58.254 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:41:58.254 -07 000000447 INF: MeasureProfile done
17-03-18 04:41:58.254 -07 000000447 INF: X=80  Z correction [um]=0.337546
17-03-18 04:41:58.254 -07 000000447 INF: Autofocus finished
17-03-18 04:41:58.454 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:41:58.454 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:41:58.454 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176284663978015. ----------
17-03-18 04:41:58.464 -07 000000610 INF: Cycle	128	Tile	6	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:41:58.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37095, sync = True, waitForSettling = True)
17-03-18 04:41:58.464 -07 000000610 INF: Z Motor: Moving to -0.169810 mm, started at -0.176285 mm, distance = 6.47 um
17-03-18 04:41:58.464 -07 000000610 INF: FPGA: Xmit ZDACW 37095\n [Z Motor]
17-03-18 04:41:58.464 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:41:58.474 -07 000000610 INF: FPGA: 'ZDACW 37095' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:41:58.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:41:58.474 -07 000000501 INF: FPGA: Recv ZDACR 37095
17-03-18 04:41:58.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:41:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.634 -07 000000382 INF: FPGA: Recv ZSGSRD 35720
17-03-18 04:41:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:41:58.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.644 -07 000000502 INF: FPGA: Recv ZSGSRD 35724
17-03-18 04:41:58.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.654 -07 000000447 INF: FPGA: Recv ZSGSRD 35719
17-03-18 04:41:58.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.664 -07 000000501 INF: FPGA: Recv ZSGSRD 35722
17-03-18 04:41:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.674 -07 000000382 INF: FPGA: Recv ZSGSRD 35725
17-03-18 04:41:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.684 -07 000000424 INF: FPGA: Recv ZSGSRD 35730
17-03-18 04:41:58.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35727
17-03-18 04:41:58.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.704 -07 000000447 INF: FPGA: Recv ZSGSRD 35717
17-03-18 04:41:58.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.714 -07 000000424 INF: FPGA: Recv ZSGSRD 35726
17-03-18 04:41:58.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:41:58.724 -07 000000618 INF: FPGA: Recv ZSGSRD 35723
17-03-18 04:41:58.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:41:58.734 -07 000000501 INF: FPGA: Recv ZPIEZORD 31475
17-03-18 04:41:58.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:41:58.744 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.4 V.
17-03-18 04:41:58.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35723 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35724 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35717 (-168.9 uncal um), Max = 35730 (-169.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:41:58.744 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35723, posNoise = 7, negNoise = 6
17-03-18 04:41:58.744 -07 000000610 INF: Z Motor: After move to -0.169810, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:41:58.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:41:58.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:41:58.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:41:58.744 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:41:58.744 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:41:58.744 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:41:58.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:41:58.744 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:41:58.744 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:41:58.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:41:58.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:41:58.744 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:41:58.744 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:41:58.754 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:41:58.754 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:41:58.754 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:41:58.754 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:41:58.764 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:41:58.764 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:41:58.764 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:41:58.764 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:41:58.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37271 150\n [Camera]
17-03-18 04:41:58.964 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:41:59.394 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:41:59.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:41:59.394 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:59.394 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:41:59.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:41:59.394 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:59.394 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:59.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:41:59.404 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:59.404 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:41:59.584 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37271 810
17-03-18 04:41:59.734 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:41:59.784 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:41:59.784 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:41:59.784 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:59.784 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:41:59.784 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:41:59.784 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:41:59.784 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:41:59.784 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:41:59.784 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:41:59.794 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:41:59.934 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:41:59.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:41:59.934 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:41:59.944 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:41:59.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:41:59.944 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:41:59.944 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:41:59.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:41:59.944 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:41:59.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:42:00.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:00.134 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:00.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37271 150' command took 2 ms to send, 1360 ms to get response, and 1363 ms overall
17-03-18 04:42:00.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:00.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169815482351262. ------
17-03-18 04:42:00.134 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:00.134 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17622 mm
17-03-18 04:42:00.134 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:00.134 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:42:00.134 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:42:00.134 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:00.144 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:00.144 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:00.144 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38496, sync = True, waitForSettling = False)
17-03-18 04:42:00.144 -07 000000447 INF: Z Motor: Moving to -0.176223 mm, started at -0.169815 mm, distance = -6.41 um
17-03-18 04:42:00.144 -07 000000382 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:42:00.154 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:42:00.154 -07 000000501 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:00.154 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:00.154 -07 000000501 INF: Y Motor: Moving 1339 steps-14
17-03-18 04:42:00.154 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:00.164 -07 000000447 INF: FPGA: Xmit ZDACW 38496\n [Z Motor]
17-03-18 04:42:00.164 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:42:00.174 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:00.174 -07 000000447 INF: FPGA: 'ZDACW 38496' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:42:00.184 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:00.184 -07 000000474 INF: FPGA: Recv ZDACR 38496
17-03-18 04:42:00.194 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:00.194 -07 000000447 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:42:00.344 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:42:00.344 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:42:00.344 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:00.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:42:00.344 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:42:00.344 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:00.344 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:00.354 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:00.354 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:42:00.354 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:42:00.354 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:00.354 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 214 ms overall
17-03-18 04:42:00.544 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:42:00.544 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:42:00.594 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:00.604 -07 000000618 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:42:00.604 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 04:42:00.604 -07 000000501 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:00.604 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:42:00.604 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 04:42:00.984 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.986717,
17-03-18 04:42:01.554 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:01.554 -07 000000581 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:42:01.564 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:01.564 -07 000000501 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:01.594 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:01.594 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:01.594 -07 000000501 INF: Y Motor: Moved to 64.8779 after 1454 ms (table move)
17-03-18 04:42:01.594 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176223 mm (DAC = 38496)
17-03-18 04:42:01.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.594 -07 000000447 INF: FPGA: Recv ZSGSRD 36719
17-03-18 04:42:01.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:42:01.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.604 -07 000000474 INF: FPGA: Recv ZSGSRD 36716
17-03-18 04:42:01.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.614 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.614 -07 000000474 INF: FPGA: Recv ZSGSRD 36724
17-03-18 04:42:01.624 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.624 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.624 -07 000000474 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:42:01.634 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.634 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.634 -07 000000474 INF: FPGA: Recv ZSGSRD 36719
17-03-18 04:42:01.644 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.644 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.644 -07 000000382 INF: FPGA: Recv ZSGSRD 36722
17-03-18 04:42:01.654 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.654 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.654 -07 000000474 INF: FPGA: Recv ZSGSRD 36713
17-03-18 04:42:01.664 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.664 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.664 -07 000000382 INF: FPGA: Recv ZSGSRD 36720
17-03-18 04:42:01.674 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.674 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.674 -07 000000474 INF: FPGA: Recv ZSGSRD 36720
17-03-18 04:42:01.684 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.684 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:01.684 -07 000000382 INF: FPGA: Recv ZSGSRD 36720
17-03-18 04:42:01.694 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.694 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:01.694 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:01.694 -07 000000608 INF: FPGA: Recv ZPIEZORD 32853
17-03-18 04:42:01.704 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:01.704 -07 000000590 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.6 V.
17-03-18 04:42:01.704 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36720 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36720 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36713 (-175.3 uncal um), Max = 36725 (-175.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:42:01.704 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36720, posNoise = 5, negNoise = 7
17-03-18 04:42:01.704 -07 000000590 INF: Z Motor: After move to -0.176223, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:01.704 -07 000000590 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms
17-03-18 04:42:01.704 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:01.754 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:42:01.754 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:01.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:01.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:01.754 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:01.754 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:01.754 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:01.754 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:01.754 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:42:01.754 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:01.764 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:01.764 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:01.764 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:42:01.764 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:42:01.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:01.814 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:02.114 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:02.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:02.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:02.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:42:02.154 -07 000000618 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:42:02.154 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:02.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:42:02.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:42:02.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:02.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:02.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:42:02.254 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:02.254 -07 000000502 INF: Autofocus start
17-03-18 04:42:02.254 -07 000000502 INF: MeasureProfile start
17-03-18 04:42:02.254 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:02.264 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:02.264 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:02.264 -07 000000502 INF: MeasureProfile done
17-03-18 04:42:02.264 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:42:02.264 -07 000000502 INF: Autofocus finished
17-03-18 04:42:02.464 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:02.464 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:02.464 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.176220421856597. ----------
17-03-18 04:42:02.464 -07 000000610 INF: Cycle	128	Tile	7	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:02.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36976, sync = True, waitForSettling = True)
17-03-18 04:42:02.474 -07 000000610 INF: Z Motor: Moving to -0.169265 mm, started at -0.176220 mm, distance = 6.96 um
17-03-18 04:42:02.474 -07 000000610 INF: FPGA: Xmit ZDACW 36976\n [Z Motor]
17-03-18 04:42:02.474 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:42:02.484 -07 000000610 INF: FPGA: 'ZDACW 36976' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:02.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:02.484 -07 000000618 INF: FPGA: Recv ZDACR 36976
17-03-18 04:42:02.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:02.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.644 -07 000000502 INF: FPGA: Recv ZSGSRD 35642
17-03-18 04:42:02.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:02.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35639
17-03-18 04:42:02.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.664 -07 000000618 INF: FPGA: Recv ZSGSRD 35638
17-03-18 04:42:02.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.674 -07 000000474 INF: FPGA: Recv ZSGSRD 35635
17-03-18 04:42:02.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.684 -07 000000502 INF: FPGA: Recv ZSGSRD 35641
17-03-18 04:42:02.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.694 -07 000000474 INF: FPGA: Recv ZSGSRD 35637
17-03-18 04:42:02.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.704 -07 000000502 INF: FPGA: Recv ZSGSRD 35636
17-03-18 04:42:02.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.714 -07 000000474 INF: FPGA: Recv ZSGSRD 35637
17-03-18 04:42:02.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.724 -07 000000382 INF: FPGA: Recv ZSGSRD 35643
17-03-18 04:42:02.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:02.734 -07 000000480 INF: FPGA: Recv ZSGSRD 35634
17-03-18 04:42:02.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:02.744 -07 000000382 INF: FPGA: Recv ZPIEZORD 31405
17-03-18 04:42:02.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:02.754 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -9.3 V.
17-03-18 04:42:02.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35638 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35638 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35634 (-168.4 uncal um), Max = 35643 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:02.754 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35638, posNoise = 5, negNoise = 4
17-03-18 04:42:02.754 -07 000000610 INF: Z Motor: After move to -0.169265, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:02.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:42:02.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:02.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:02.754 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:02.754 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:02.754 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:02.754 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:02.754 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:02.754 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:02.754 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:02.754 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:02.754 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:02.754 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:02.764 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:02.764 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:02.764 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:42:02.764 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:02.774 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:42:02.774 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:42:02.774 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:42:02.774 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:02.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37153 150\n [Camera]
17-03-18 04:42:02.974 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:03.394 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:03.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:03.394 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:03.394 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:03.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:42:03.404 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:03.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:03.404 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:03.404 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:03.404 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:42:03.594 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37153 810
17-03-18 04:42:03.744 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:03.804 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:42:03.804 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:42:03.804 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:03.804 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:03.804 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:42:03.804 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:42:03.804 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:42:03.804 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:03.814 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:03.814 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:42:03.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:03.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:03.944 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:03.944 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:03.944 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:42:03.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:03.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:03.944 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:03.944 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:03.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:42:04.134 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:04.134 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:04.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37153 150' command took 2 ms to send, 1357 ms to get response, and 1364 ms overall
17-03-18 04:42:04.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:04.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169269424319212. ------
17-03-18 04:42:04.144 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:04.144 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17592 mm
17-03-18 04:42:04.144 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:04.264 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:04.264 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 04:42:04.264 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:42:04.264 -07 000000590 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 04:42:04.264 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:04.264 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38430, sync = True, waitForSettling = False)
17-03-18 04:42:04.264 -07 000000502 INF: Z Motor: Moving to -0.175921 mm, started at -0.169269 mm, distance = -6.65 um
17-03-18 04:42:04.274 -07 000000502 INF: FPGA: Xmit ZDACW 38430\n [Z Motor]
17-03-18 04:42:04.274 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:42:04.284 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:04.284 -07 000000502 INF: FPGA: 'ZDACW 38430' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:42:04.284 -07 000000625 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:42:04.294 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:42:04.294 -07 000000590 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:04.294 -07 000000590 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:04.294 -07 000000590 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:42:04.294 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:04.294 -07 000000581 INF: FPGA: Recv ZDACR 38430
17-03-18 04:42:04.304 -07 000000502 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:04.304 -07 000000502 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 04:42:04.304 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:04.344 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:42:04.344 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:42:04.344 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:04.354 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:42:04.354 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:42:04.354 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:04.354 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:04.354 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:42:04.354 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:42:04.364 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:42:04.464 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:04.464 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:42:04.674 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:42:04.674 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 04:42:04.724 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:04.734 -07 000000591 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:42:04.734 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:04.734 -07 000000590 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:04.734 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:42:04.734 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.171 mm/sec
17-03-18 04:42:05.684 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:05.684 -07 000000608 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:42:05.694 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:05.694 -07 000000590 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:05.724 -07 000000590 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:05.724 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:05.724 -07 000000590 INF: Y Motor: Moved to 65.7129 after 1465 ms (table move)
17-03-18 04:42:05.734 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175921 mm (DAC = 38430)
17-03-18 04:42:05.734 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.734 -07 000000512 INF: FPGA: Recv ZSGSRD 36678
17-03-18 04:42:05.744 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:42:05.744 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.744 -07 000000474 INF: FPGA: Recv ZSGSRD 36670
17-03-18 04:42:05.754 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.754 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.754 -07 000000455 INF: FPGA: Recv ZSGSRD 36672
17-03-18 04:42:05.764 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.764 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.764 -07 000000461 INF: FPGA: Recv ZSGSRD 36672
17-03-18 04:42:05.774 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.774 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.774 -07 000000608 INF: FPGA: Recv ZSGSRD 36674
17-03-18 04:42:05.784 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.784 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.784 -07 000000447 INF: FPGA: Recv ZSGSRD 36681
17-03-18 04:42:05.794 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.794 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.794 -07 000000474 INF: FPGA: Recv ZSGSRD 36677
17-03-18 04:42:05.804 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.804 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.804 -07 000000626 INF: FPGA: Recv ZSGSRD 36681
17-03-18 04:42:05.814 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.814 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.814 -07 000000382 INF: FPGA: Recv ZSGSRD 36672
17-03-18 04:42:05.824 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.824 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:05.824 -07 000000461 INF: FPGA: Recv ZSGSRD 36672
17-03-18 04:42:05.834 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.834 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:05.834 -07 000000501 INF: FPGA: Recv ZPIEZORD 32751
17-03-18 04:42:05.844 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:05.844 -07 000000618 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.7 V.
17-03-18 04:42:05.844 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36675 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36673 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36670 (-175.0 uncal um), Max = 36681 (-175.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:42:05.844 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36675, posNoise = 6, negNoise = 5
17-03-18 04:42:05.844 -07 000000618 INF: Z Motor: After move to -0.175921, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:05.844 -07 000000618 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:42:05.844 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:05.894 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1746 ms
17-03-18 04:42:05.894 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:05.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:05.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:05.894 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:05.894 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:05.894 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:05.894 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:05.894 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:05.894 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:05.904 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:05.904 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:05.904 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:42:05.904 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:42:05.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:05.954 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:06.254 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:06.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:06.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:06.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:06.294 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:06.294 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:06.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:42:06.344 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.986717,
17-03-18 04:42:06.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:42:06.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:06.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:06.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:42:06.394 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:06.394 -07 000000606 INF: Autofocus start
17-03-18 04:42:06.394 -07 000000606 INF: MeasureProfile start
17-03-18 04:42:06.394 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:06.404 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:06.404 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:06.404 -07 000000606 INF: MeasureProfile done
17-03-18 04:42:06.404 -07 000000606 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:42:06.404 -07 000000606 INF: Autofocus finished
17-03-18 04:42:06.604 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:06.604 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:42:06.604 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175931332310218. ----------
17-03-18 04:42:06.614 -07 000000610 INF: Cycle	128	Tile	8	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:06.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36981, sync = True, waitForSettling = True)
17-03-18 04:42:06.614 -07 000000610 INF: Z Motor: Moving to -0.169288 mm, started at -0.175931 mm, distance = 6.64 um
17-03-18 04:42:06.614 -07 000000610 INF: FPGA: Xmit ZDACW 36981\n [Z Motor]
17-03-18 04:42:06.614 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:06.624 -07 000000610 INF: FPGA: 'ZDACW 36981' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:06.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:06.624 -07 000000606 INF: FPGA: Recv ZDACR 36981
17-03-18 04:42:06.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:06.694 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:06.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.784 -07 000000480 INF: FPGA: Recv ZSGSRD 35640
17-03-18 04:42:06.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:06.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.794 -07 000000625 INF: FPGA: Recv ZSGSRD 35643
17-03-18 04:42:06.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.804 -07 000000569 INF: FPGA: Recv ZSGSRD 35640
17-03-18 04:42:06.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.814 -07 000000581 INF: FPGA: Recv ZSGSRD 35645
17-03-18 04:42:06.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.824 -07 000000512 INF: FPGA: Recv ZSGSRD 35639
17-03-18 04:42:06.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.834 -07 000000581 INF: FPGA: Recv ZSGSRD 35643
17-03-18 04:42:06.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.844 -07 000000455 INF: FPGA: Recv ZSGSRD 35647
17-03-18 04:42:06.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.864 -07 000000512 INF: FPGA: Recv ZSGSRD 35635
17-03-18 04:42:06.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.894 -07 000000581 INF: FPGA: Recv ZSGSRD 35641
17-03-18 04:42:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:06.924 -07 000000512 INF: FPGA: Recv ZSGSRD 35643
17-03-18 04:42:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:06.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:06.934 -07 000000581 INF: FPGA: Recv ZPIEZORD 31411
17-03-18 04:42:06.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:06.944 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.3 V.
17-03-18 04:42:06.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35642 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35642 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35635 (-168.4 uncal um), Max = 35647 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:42:06.944 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35642, posNoise = 5, negNoise = 7
17-03-18 04:42:06.944 -07 000000610 INF: Z Motor: After move to -0.169288, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:06.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-18 04:42:06.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:06.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:06.944 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:06.944 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:06.944 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:06.944 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:06.944 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:06.944 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:06.944 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:06.944 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:06.944 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:06.944 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:06.944 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:06.944 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:06.954 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:06.954 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:06.954 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:42:06.954 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:42:06.964 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:42:06.964 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:06.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37158 150\n [Camera]
17-03-18 04:42:07.164 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:07.584 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:07.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:07.584 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:07.594 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:07.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:07.594 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:07.594 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:07.594 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:07.594 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:07.594 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:07.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37158 810
17-03-18 04:42:07.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:07.984 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:42:07.984 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:42:07.984 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:07.984 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:07.984 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:42:07.984 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:42:07.984 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:07.984 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:07.984 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:42:07.994 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:42:08.134 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:08.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:08.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:08.134 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:08.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:08.134 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:08.144 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:08.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:42:08.144 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:08.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:42:08.324 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:42:08.324 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:08.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37158 150' command took 2 ms to send, 1357 ms to get response, and 1364 ms overall
17-03-18 04:42:08.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:08.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169295121167779. ------
17-03-18 04:42:08.334 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:08.334 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17574 mm
17-03-18 04:42:08.334 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:08.464 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:08.464 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-18 04:42:08.464 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:08.464 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:42:08.464 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:42:08.464 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38391, sync = True, waitForSettling = False)
17-03-18 04:42:08.464 -07 000000474 INF: Z Motor: Moving to -0.175743 mm, started at -0.169295 mm, distance = -6.45 um
17-03-18 04:42:08.474 -07 000000474 INF: FPGA: Xmit ZDACW 38391\n [Z Motor]
17-03-18 04:42:08.474 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:42:08.484 -07 000000474 INF: FPGA: 'ZDACW 38391' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:42:08.484 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:08.484 -07 000000606 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:42:08.494 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:42:08.494 -07 000000625 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:08.494 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:08.494 -07 000000625 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:42:08.494 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:08.494 -07 000000590 INF: FPGA: Recv ZDACR 38391
17-03-18 04:42:08.504 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:08.504 -07 000000474 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:42:08.504 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:08.544 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:42:08.544 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:42:08.544 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:08.544 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:42:08.544 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:42:08.544 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:08.544 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:08.544 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:42:08.544 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:08.554 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:42:08.664 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:08.664 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:42:08.884 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:42:08.884 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 390 ms overall
17-03-18 04:42:08.934 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:08.934 -07 000000581 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:42:08.944 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:08.944 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:08.944 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:42:08.944 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-18 04:42:09.894 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:09.894 -07 000000455 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:42:09.904 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:09.904 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:09.934 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:09.934 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:09.934 -07 000000625 INF: Y Motor: Moved to 66.5376 after 1470 ms (table move)
17-03-18 04:42:09.934 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175743 mm (DAC = 38391)
17-03-18 04:42:09.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.934 -07 000000608 INF: FPGA: Recv ZSGSRD 36654
17-03-18 04:42:09.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:09.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.944 -07 000000467 INF: FPGA: Recv ZSGSRD 36644
17-03-18 04:42:09.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:09.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.954 -07 000000581 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:42:09.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:09.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.964 -07 000000625 INF: FPGA: Recv ZSGSRD 36650
17-03-18 04:42:09.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:09.974 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.974 -07 000000581 INF: FPGA: Recv ZSGSRD 36647
17-03-18 04:42:09.984 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:09.984 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.984 -07 000000474 INF: FPGA: Recv ZSGSRD 36648
17-03-18 04:42:09.994 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:09.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:09.994 -07 000000608 INF: FPGA: Recv ZSGSRD 36648
17-03-18 04:42:10.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:10.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:10.004 -07 000000590 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:42:10.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:10.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:10.014 -07 000000606 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:42:10.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:10.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:10.024 -07 000000501 INF: FPGA: Recv ZSGSRD 36644
17-03-18 04:42:10.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:10.034 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:10.034 -07 000000625 INF: FPGA: Recv ZPIEZORD 32725
17-03-18 04:42:10.044 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:10.044 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.7 V.
17-03-18 04:42:10.044 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36647 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36646 (-174.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36643 (-174.8 uncal um), Max = 36654 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:10.044 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36647, posNoise = 7, negNoise = 4
17-03-18 04:42:10.044 -07 000000512 INF: Z Motor: After move to -0.175743, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:10.044 -07 000000512 INF: Z Motor: Settle wait time = 1473 ms, measure time = 104 ms (allowed 150 ms), total time = 1577 ms
17-03-18 04:42:10.044 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:10.094 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1756 ms
17-03-18 04:42:10.094 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:10.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:10.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:10.094 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:10.094 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:10.094 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:10.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:10.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:10.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:10.104 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:10.104 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:10.114 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:42:10.114 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:42:10.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:10.164 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:10.464 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:10.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:10.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:10.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:10.504 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:10.504 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:10.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 04:42:10.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:42:10.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:10.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:42:10.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:42:10.604 -07 000000512 INF: Autofocus start
17-03-18 04:42:10.604 -07 000000512 INF: MeasureProfile start
17-03-18 04:42:10.604 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:10.604 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:10.614 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:10.614 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:10.614 -07 000000512 INF: MeasureProfile done
17-03-18 04:42:10.624 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:42:10.624 -07 000000512 INF: Autofocus finished
17-03-18 04:42:10.814 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:10.814 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:10.814 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175751454370249. ----------
17-03-18 04:42:10.814 -07 000000610 INF: Cycle	128	Tile	9	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:10.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36888, sync = True, waitForSettling = True)
17-03-18 04:42:10.824 -07 000000610 INF: Z Motor: Moving to -0.168862 mm, started at -0.175751 mm, distance = 6.89 um
17-03-18 04:42:10.824 -07 000000610 INF: FPGA: Xmit ZDACW 36888\n [Z Motor]
17-03-18 04:42:10.824 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:42:10.834 -07 000000610 INF: FPGA: 'ZDACW 36888' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:10.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:10.834 -07 000000581 INF: FPGA: Recv ZDACR 36888
17-03-18 04:42:10.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:10.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:10.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:10.994 -07 000000455 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:42:11.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.004 -07 000000606 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:42:11.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.014 -07 000000474 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:42:11.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.024 -07 000000608 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:42:11.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.034 -07 000000474 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:42:11.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.044 -07 000000474 INF: FPGA: Recv ZSGSRD 35578
17-03-18 04:42:11.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.054 -07 000000512 INF: FPGA: Recv ZSGSRD 35578
17-03-18 04:42:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.064 -07 000000474 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:42:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.074 -07 000000512 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:42:11.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:11.084 -07 000000512 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:42:11.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:11.094 -07 000000512 INF: FPGA: Recv ZPIEZORD 31311
17-03-18 04:42:11.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:11.104 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.4 V.
17-03-18 04:42:11.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35576 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35575 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35573 (-168.0 uncal um), Max = 35579 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:42:11.104 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35576, posNoise = 3, negNoise = 3
17-03-18 04:42:11.104 -07 000000610 INF: Z Motor: After move to -0.168862, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:11.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:42:11.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:11.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:11.104 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:11.104 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:11.104 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:11.104 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:11.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:11.104 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:11.104 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:11.104 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:11.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:11.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:11.114 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:11.114 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:11.114 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:11.114 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:11.124 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:42:11.124 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:42:11.124 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:42:11.124 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:11.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37065 150\n [Camera]
17-03-18 04:42:11.324 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:11.694 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:11.704 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.000345,
17-03-18 04:42:11.744 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:11.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:11.744 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:11.754 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:11.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:11.754 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:11.754 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:11.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:11.754 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:11.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:11.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37065 810
17-03-18 04:42:12.094 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:12.134 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:42:12.134 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:42:12.134 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:42:12.134 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:12.134 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:42:12.134 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:12.134 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:42:12.134 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:42:12.134 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:42:12.144 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:42:12.294 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:12.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:12.294 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:12.294 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:12.294 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:42:12.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:12.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:12.294 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:12.294 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:12.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:42:12.484 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:12.484 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:12.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37065 150' command took 2 ms to send, 1357 ms to get response, and 1363 ms overall
17-03-18 04:42:12.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:12.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168871123166423. ------
17-03-18 04:42:12.494 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:12.494 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17565 mm
17-03-18 04:42:12.494 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:12.494 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:42:12.494 -07 000000590 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 04:42:12.494 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:12.494 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38372, sync = True, waitForSettling = False)
17-03-18 04:42:12.494 -07 000000606 INF: Z Motor: Moving to -0.175656 mm, started at -0.168871 mm, distance = -6.78 um
17-03-18 04:42:12.504 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:12.504 -07 000000606 INF: FPGA: Xmit ZDACW 38372\n [Z Motor]
17-03-18 04:42:12.504 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:42:12.514 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:12.514 -07 000000606 INF: FPGA: 'ZDACW 38372' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:42:12.514 -07 000000501 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:42:12.524 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:12.524 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:42:12.524 -07 000000590 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:12.524 -07 000000590 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:12.524 -07 000000590 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:42:12.534 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:12.534 -07 000000501 INF: FPGA: Recv ZDACR 38372
17-03-18 04:42:12.544 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:12.544 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:12.544 -07 000000606 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:42:12.684 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:42:12.684 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:42:12.684 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:12.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:42:12.684 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:42:12.684 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:12.684 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:12.694 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:12.694 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:42:12.694 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:42:12.724 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:12.724 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:42:12.914 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:42:12.914 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:42:12.964 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:12.974 -07 000000467 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:42:12.984 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:12.984 -07 000000590 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:12.984 -07 000000590 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 04:42:12.984 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-18 04:42:13.934 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:13.934 -07 000000474 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:42:13.944 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:13.944 -07 000000590 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:13.974 -07 000000590 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:13.974 -07 000000590 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:13.974 -07 000000590 INF: Y Motor: Moved to 67.3706 after 1473 ms (table move)
17-03-18 04:42:13.974 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175656 mm (DAC = 38372)
17-03-18 04:42:13.974 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:13.974 -07 000000512 INF: FPGA: Recv ZSGSRD 36633
17-03-18 04:42:13.984 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:13.984 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:13.984 -07 000000467 INF: FPGA: Recv ZSGSRD 36631
17-03-18 04:42:13.994 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:13.994 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:13.994 -07 000000474 INF: FPGA: Recv ZSGSRD 36629
17-03-18 04:42:14.004 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.004 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.004 -07 000000590 INF: FPGA: Recv ZSGSRD 36635
17-03-18 04:42:14.014 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.014 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.014 -07 000000606 INF: FPGA: Recv ZSGSRD 36623
17-03-18 04:42:14.024 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.024 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.024 -07 000000467 INF: FPGA: Recv ZSGSRD 36637
17-03-18 04:42:14.034 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.034 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.034 -07 000000606 INF: FPGA: Recv ZSGSRD 36634
17-03-18 04:42:14.044 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.044 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.044 -07 000000467 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:42:14.054 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.054 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.054 -07 000000501 INF: FPGA: Recv ZSGSRD 36634
17-03-18 04:42:14.064 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.064 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:14.064 -07 000000590 INF: FPGA: Recv ZSGSRD 36637
17-03-18 04:42:14.074 -07 000000625 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.074 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:14.074 -07 000000474 INF: FPGA: Recv ZPIEZORD 32732
17-03-18 04:42:14.084 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.084 -07 000000625 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.6 V.
17-03-18 04:42:14.084 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36633 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36634 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36623 (-174.7 uncal um), Max = 36637 (-174.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:42:14.084 -07 000000625 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36633, posNoise = 4, negNoise = 10
17-03-18 04:42:14.084 -07 000000625 INF: Z Motor: After move to -0.175656, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:14.084 -07 000000625 INF: Z Motor: Settle wait time = 1475 ms, measure time = 107 ms (allowed 150 ms), total time = 1582 ms
17-03-18 04:42:14.084 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:14.134 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 04:42:14.134 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:14.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:14.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:14.134 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:14.134 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:14.134 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:14.134 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:14.134 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:14.134 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:14.144 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:14.144 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:14.154 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:42:14.154 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:42:14.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:14.204 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:14.504 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:14.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:14.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:14.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:42:14.544 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:14.544 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:14.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:42:14.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:42:14.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:14.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:14.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:42:14.644 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:14.644 -07 000000625 INF: Autofocus start
17-03-18 04:42:14.644 -07 000000625 INF: MeasureProfile start
17-03-18 04:42:14.644 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:14.654 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:14.654 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:14.654 -07 000000625 INF: MeasureProfile done
17-03-18 04:42:14.654 -07 000000625 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:42:14.654 -07 000000625 INF: Autofocus finished
17-03-18 04:42:14.854 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:14.854 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:14.854 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175661515400264. ----------
17-03-18 04:42:14.854 -07 000000610 INF: Cycle	128	Tile	10	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:14.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36869, sync = True, waitForSettling = True)
17-03-18 04:42:14.864 -07 000000610 INF: Z Motor: Moving to -0.168775 mm, started at -0.175662 mm, distance = 6.89 um
17-03-18 04:42:14.864 -07 000000610 INF: FPGA: Xmit ZDACW 36869\n [Z Motor]
17-03-18 04:42:14.864 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:42:14.874 -07 000000610 INF: FPGA: 'ZDACW 36869' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:14.874 -07 000000569 INF: FPGA: Recv ZDACR 36869
17-03-18 04:42:14.884 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:14.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.034 -07 000000626 INF: FPGA: Recv ZSGSRD 35562
17-03-18 04:42:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:15.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.044 -07 000000618 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:42:15.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.054 -07 000000590 INF: FPGA: Recv ZSGSRD 35564
17-03-18 04:42:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.064 -07 000000474 INF: FPGA: Recv ZSGSRD 35567
17-03-18 04:42:15.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.074 -07 000000626 INF: FPGA: Recv ZSGSRD 35564
17-03-18 04:42:15.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.084 -07 000000618 INF: FPGA: Recv ZSGSRD 35566
17-03-18 04:42:15.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.094 -07 000000590 INF: FPGA: Recv ZSGSRD 35563
17-03-18 04:42:15.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.104 -07 000000447 INF: FPGA: Recv ZSGSRD 35560
17-03-18 04:42:15.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35560
17-03-18 04:42:15.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:15.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35567
17-03-18 04:42:15.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:15.134 -07 000000591 INF: FPGA: Recv ZPIEZORD 31299
17-03-18 04:42:15.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:15.144 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.4 V.
17-03-18 04:42:15.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35560 (-167.9 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:15.144 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 3, negNoise = 4
17-03-18 04:42:15.144 -07 000000610 INF: Z Motor: After move to -0.168775, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:15.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:42:15.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:15.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:15.144 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:15.144 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:15.144 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:15.144 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:15.144 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:15.144 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:15.144 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:42:15.144 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:15.144 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:15.144 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:15.144 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:42:15.144 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:15.154 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:42:15.154 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:15.164 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:42:15.164 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:15.164 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:42:15.164 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:42:15.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37045 150\n [Camera]
17-03-18 04:42:15.364 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:15.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:15.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:15.794 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:15.794 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:15.794 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:42:15.794 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:15.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:15.794 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:15.794 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:15.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:42:15.984 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37045 810
17-03-18 04:42:16.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:16.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:42:16.164 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:42:16.164 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:16.164 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:42:16.164 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:42:16.164 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:16.174 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:16.174 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:16.174 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:42:16.184 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:42:16.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:16.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:16.334 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:16.334 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:16.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:42:16.334 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:16.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:16.334 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:16.334 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:16.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:42:16.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:16.524 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:16.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37045 150' command took 2 ms to send, 1357 ms to get response, and 1363 ms overall
17-03-18 04:42:16.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:16.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168794032620722. ------
17-03-18 04:42:16.534 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:16.534 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17520 mm
17-03-18 04:42:16.534 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:16.534 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:42:16.534 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 04:42:16.534 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:16.534 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38272, sync = True, waitForSettling = False)
17-03-18 04:42:16.534 -07 000000606 INF: Z Motor: Moving to -0.175198 mm, started at -0.168794 mm, distance = -6.40 um
17-03-18 04:42:16.544 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:16.544 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:16.544 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:42:16.554 -07 000000606 INF: FPGA: Xmit ZDACW 38272\n [Z Motor]
17-03-18 04:42:16.554 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:42:16.554 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:16.554 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:42:16.554 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:16.554 -07 000000625 INF: Y Motor: Moving 1346 steps-25
17-03-18 04:42:16.564 -07 000000606 INF: FPGA: 'ZDACW 38272' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:42:16.564 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:16.574 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:16.584 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:16.584 -07 000000591 INF: FPGA: Recv ZDACR 38272
17-03-18 04:42:16.594 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:16.594 -07 000000606 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:42:16.694 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:16.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:16.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:42:16.734 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:42:16.734 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:16.734 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:42:16.734 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:42:16.734 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:16.744 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:16.744 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:42:16.744 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:42:16.744 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:42:16.764 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:16.764 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:42:16.944 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:42:16.944 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 04:42:16.994 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:17.004 -07 000000474 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:42:17.004 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:17.004 -07 000000625 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:17.004 -07 000000625 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:42:17.004 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.842 mm, average velocity = 2.159 mm/sec
17-03-18 04:42:17.064 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.98264,
17-03-18 04:42:17.954 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:17.954 -07 000000626 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:42:17.964 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:17.964 -07 000000625 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:17.994 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:17.994 -07 000000625 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:17.994 -07 000000625 INF: Y Motor: Moved to 68.2036 after 1454 ms (table move)
17-03-18 04:42:17.994 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175198 mm (DAC = 38272)
17-03-18 04:42:17.994 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:17.994 -07 000000591 INF: FPGA: Recv ZSGSRD 36570
17-03-18 04:42:18.004 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:18.004 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.004 -07 000000590 INF: FPGA: Recv ZSGSRD 36568
17-03-18 04:42:18.014 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.014 -07 000000625 INF: FPGA: Recv ZSGSRD 36555
17-03-18 04:42:18.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.024 -07 000000590 INF: FPGA: Recv ZSGSRD 36559
17-03-18 04:42:18.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.034 -07 000000625 INF: FPGA: Recv ZSGSRD 36560
17-03-18 04:42:18.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.044 -07 000000501 INF: FPGA: Recv ZSGSRD 36559
17-03-18 04:42:18.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.054 -07 000000626 INF: FPGA: Recv ZSGSRD 36567
17-03-18 04:42:18.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36562
17-03-18 04:42:18.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.074 -07 000000626 INF: FPGA: Recv ZSGSRD 36565
17-03-18 04:42:18.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:18.084 -07 000000625 INF: FPGA: Recv ZSGSRD 36566
17-03-18 04:42:18.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.094 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:18.094 -07 000000590 INF: FPGA: Recv ZPIEZORD 32633
17-03-18 04:42:18.104 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.104 -07 000000569 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.7 V.
17-03-18 04:42:18.104 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36563 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36564 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36555 (-174.3 uncal um), Max = 36570 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:42:18.104 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36563, posNoise = 7, negNoise = 8
17-03-18 04:42:18.104 -07 000000569 INF: Z Motor: After move to -0.175198, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:18.104 -07 000000569 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:42:18.104 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:18.154 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:42:18.154 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:18.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:18.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:18.154 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:18.154 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:18.154 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:18.154 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:18.154 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:18.154 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:18.164 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:18.164 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:18.174 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:42:18.174 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:42:18.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:18.224 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:18.524 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:18.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:18.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:18.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:18.564 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:18.564 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:18.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 04:42:18.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:42:18.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:18.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:18.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:42:18.664 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:18.664 -07 000000590 INF: Autofocus start
17-03-18 04:42:18.664 -07 000000590 INF: MeasureProfile start
17-03-18 04:42:18.664 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:18.674 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:18.674 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:18.674 -07 000000590 INF: MeasureProfile done
17-03-18 04:42:18.674 -07 000000590 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:42:18.674 -07 000000590 INF: Autofocus finished
17-03-18 04:42:18.874 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:18.874 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:18.884 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.175211820550341. ----------
17-03-18 04:42:18.884 -07 000000610 INF: Cycle	128	Tile	11	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:18.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36752, sync = True, waitForSettling = True)
17-03-18 04:42:18.884 -07 000000610 INF: Z Motor: Moving to -0.168240 mm, started at -0.175212 mm, distance = 6.97 um
17-03-18 04:42:18.884 -07 000000610 INF: FPGA: Xmit ZDACW 36752\n [Z Motor]
17-03-18 04:42:18.884 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:42:18.894 -07 000000610 INF: FPGA: 'ZDACW 36752' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:18.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:18.894 -07 000000625 INF: FPGA: Recv ZDACR 36752
17-03-18 04:42:18.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:18.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:19.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.054 -07 000000591 INF: FPGA: Recv ZSGSRD 35481
17-03-18 04:42:19.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.064 -07 000000626 INF: FPGA: Recv ZSGSRD 35476
17-03-18 04:42:19.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.074 -07 000000625 INF: FPGA: Recv ZSGSRD 35477
17-03-18 04:42:19.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.084 -07 000000501 INF: FPGA: Recv ZSGSRD 35479
17-03-18 04:42:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.094 -07 000000447 INF: FPGA: Recv ZSGSRD 35487
17-03-18 04:42:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.104 -07 000000501 INF: FPGA: Recv ZSGSRD 35480
17-03-18 04:42:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.114 -07 000000569 INF: FPGA: Recv ZSGSRD 35477
17-03-18 04:42:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35483
17-03-18 04:42:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.134 -07 000000590 INF: FPGA: Recv ZSGSRD 35476
17-03-18 04:42:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:19.144 -07 000000625 INF: FPGA: Recv ZSGSRD 35481
17-03-18 04:42:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:19.154 -07 000000591 INF: FPGA: Recv ZPIEZORD 31184
17-03-18 04:42:19.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:19.164 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.5 V.
17-03-18 04:42:19.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35480 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35480 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35476 (-167.4 uncal um), Max = 35487 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:19.164 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35480, posNoise = 7, negNoise = 4
17-03-18 04:42:19.164 -07 000000610 INF: Z Motor: After move to -0.168240, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:19.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:42:19.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:19.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:19.164 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:19.164 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:19.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:19.164 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:19.164 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:19.164 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:19.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:19.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:19.164 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:42:19.164 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:19.174 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:19.174 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:19.174 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:19.174 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:19.184 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:42:19.184 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:19.184 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:42:19.184 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:19.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36929 150\n [Camera]
17-03-18 04:42:19.384 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:19.814 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:42:19.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:42:19.814 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:19.814 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:42:19.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:42:19.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:19.814 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:19.814 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:19.814 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:19.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:19.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36929 810
17-03-18 04:42:20.144 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:20.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:42:20.194 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:42:20.194 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:20.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:42:20.194 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:42:20.194 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:20.194 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:20.194 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:42:20.194 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:20.204 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:42:20.354 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:20.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:20.354 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:20.354 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:20.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:20.354 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:20.364 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:20.364 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:42:20.364 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:20.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:42:20.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:20.544 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:20.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36929 150' command took 2 ms to send, 1355 ms to get response, and 1363 ms overall
17-03-18 04:42:20.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:20.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168254398800814. ------
17-03-18 04:42:20.554 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17485 mm
17-03-18 04:42:20.554 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:20.554 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:20.674 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:20.674 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 04:42:20.674 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:20.674 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38195, sync = True, waitForSettling = False)
17-03-18 04:42:20.674 -07 000000501 INF: Z Motor: Moving to -0.174846 mm, started at -0.168254 mm, distance = -6.59 um
17-03-18 04:42:20.674 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:42:20.674 -07 000000590 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 04:42:20.684 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:20.684 -07 000000591 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:42:20.694 -07 000000501 INF: FPGA: Xmit ZDACW 38195\n [Z Motor]
17-03-18 04:42:20.694 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:42:20.694 -07 000000590 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:20.694 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:42:20.694 -07 000000590 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:20.694 -07 000000590 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:42:20.704 -07 000000501 INF: FPGA: 'ZDACW 38195' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:42:20.704 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:20.704 -07 000000455 INF: FPGA: Recv ZDACR 38195
17-03-18 04:42:20.714 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:20.714 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:20.714 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:42:20.754 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:42:20.754 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:42:20.754 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:20.754 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:42:20.754 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:42:20.754 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:20.754 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:20.754 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:20.754 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:42:20.764 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:42:20.874 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:20.874 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:42:21.084 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 04:42:21.084 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:42:21.134 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:21.144 -07 000000608 INF: FPGA: Recv YRDPOS 141364
17-03-18 04:42:21.144 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:42:21.144 -07 000000590 INF: Y Motor: Encoder = 141364 = motor step 110440.6 = 69.0254 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:21.144 -07 000000590 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:42:21.144 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-18 04:42:21.694 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:21.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:22.094 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:22.094 -07 000000461 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:42:22.104 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.104 -07 000000590 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:22.134 -07 000000590 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:22.134 -07 000000590 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:42:22.134 -07 000000590 INF: Y Motor: Moved to 69.0259 after 1460 ms (table move)
17-03-18 04:42:22.134 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174846 mm (DAC = 38195)
17-03-18 04:42:22.134 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.134 -07 000000581 INF: FPGA: Recv ZSGSRD 36517
17-03-18 04:42:22.144 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:22.144 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.144 -07 000000618 INF: FPGA: Recv ZSGSRD 36501
17-03-18 04:42:22.154 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.154 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36502
17-03-18 04:42:22.164 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.164 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.164 -07 000000591 INF: FPGA: Recv ZSGSRD 36504
17-03-18 04:42:22.174 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.174 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.174 -07 000000455 INF: FPGA: Recv ZSGSRD 36502
17-03-18 04:42:22.184 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.184 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.184 -07 000000625 INF: FPGA: Recv ZSGSRD 36507
17-03-18 04:42:22.194 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.194 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.194 -07 000000480 INF: FPGA: Recv ZSGSRD 36513
17-03-18 04:42:22.204 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.204 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.204 -07 000000626 INF: FPGA: Recv ZSGSRD 36515
17-03-18 04:42:22.214 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.214 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.214 -07 000000581 INF: FPGA: Recv ZSGSRD 36509
17-03-18 04:42:22.224 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:22.224 -07 000000455 INF: FPGA: Recv ZSGSRD 36504
17-03-18 04:42:22.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.234 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:22.234 -07 000000512 INF: FPGA: Recv ZPIEZORD 32565
17-03-18 04:42:22.244 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:22.244 -07 000000569 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.7 V.
17-03-18 04:42:22.244 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36507 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36501 (-173.9 uncal um), Max = 36517 (-174.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:42:22.244 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36507, posNoise = 10, negNoise = 6
17-03-18 04:42:22.244 -07 000000569 INF: Z Motor: After move to -0.174846, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:22.244 -07 000000569 INF: Z Motor: Settle wait time = 1464 ms, measure time = 104 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:42:22.244 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:22.294 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 04:42:22.294 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:22.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:22.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:22.294 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:22.294 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:22.294 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:22.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:22.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:22.294 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:22.304 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:22.304 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:22.314 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:42:22.314 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:42:22.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:22.364 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:42:22.424 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.014009,
17-03-18 04:42:22.664 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:42:22.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:42:22.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:22.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:22.704 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:22.704 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:22.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:42:22.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:42:22.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:22.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:22.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:42:22.804 -07 000000512 INF: Autofocus start
17-03-18 04:42:22.804 -07 000000512 INF: MeasureProfile start
17-03-18 04:42:22.804 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:22.804 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:22.814 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:22.814 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:22.814 -07 000000512 INF: MeasureProfile done
17-03-18 04:42:22.814 -07 000000512 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 04:42:22.814 -07 000000512 INF: Autofocus finished
17-03-18 04:42:23.014 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:23.014 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:23.014 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174852064670402. ----------
17-03-18 04:42:23.014 -07 000000610 INF: Cycle	128	Tile	12	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:23.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36601, sync = True, waitForSettling = True)
17-03-18 04:42:23.024 -07 000000610 INF: Z Motor: Moving to -0.167549 mm, started at -0.174852 mm, distance = 7.30 um
17-03-18 04:42:23.024 -07 000000610 INF: FPGA: Xmit ZDACW 36601\n [Z Motor]
17-03-18 04:42:23.024 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:42:23.034 -07 000000610 INF: FPGA: 'ZDACW 36601' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:23.034 -07 000000512 INF: FPGA: Recv ZDACR 36601
17-03-18 04:42:23.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:23.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.194 -07 000000591 INF: FPGA: Recv ZSGSRD 35372
17-03-18 04:42:23.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.204 -07 000000512 INF: FPGA: Recv ZSGSRD 35373
17-03-18 04:42:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35370
17-03-18 04:42:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.224 -07 000000512 INF: FPGA: Recv ZSGSRD 35368
17-03-18 04:42:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.234 -07 000000608 INF: FPGA: Recv ZSGSRD 35371
17-03-18 04:42:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.244 -07 000000618 INF: FPGA: Recv ZSGSRD 35375
17-03-18 04:42:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.254 -07 000000424 INF: FPGA: Recv ZSGSRD 35370
17-03-18 04:42:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.264 -07 000000591 INF: FPGA: Recv ZSGSRD 35367
17-03-18 04:42:23.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.274 -07 000000618 INF: FPGA: Recv ZSGSRD 35373
17-03-18 04:42:23.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:23.284 -07 000000467 INF: FPGA: Recv ZSGSRD 35375
17-03-18 04:42:23.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:23.294 -07 000000512 INF: FPGA: Recv ZPIEZORD 31015
17-03-18 04:42:23.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:23.304 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.6 V.
17-03-18 04:42:23.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35371 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35372 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35367 (-166.7 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:23.304 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35371, posNoise = 4, negNoise = 4
17-03-18 04:42:23.304 -07 000000610 INF: Z Motor: After move to -0.167549, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:23.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:42:23.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:23.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:23.304 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:23.304 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:23.304 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:23.304 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:23.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:23.304 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:23.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:23.304 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:23.304 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:23.304 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:23.314 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:23.314 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:23.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:23.314 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:23.324 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:42:23.324 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:42:23.324 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:42:23.324 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:23.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36778 150\n [Camera]
17-03-18 04:42:23.524 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:23.954 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:23.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:23.954 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:23.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:23.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:23.954 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:23.954 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:23.954 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:23.964 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:23.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:24.144 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36778 810
17-03-18 04:42:24.294 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:24.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 04:42:24.334 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 04:42:24.334 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:24.334 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:42:24.334 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:42:24.334 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:24.334 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:24.334 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:24.334 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:42:24.344 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:42:24.494 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:24.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:24.494 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:24.494 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:24.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 04:42:24.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:24.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:24.504 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:24.504 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:24.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:42:24.684 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:24.684 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:24.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36778 150' command took 2 ms to send, 1359 ms to get response, and 1364 ms overall
17-03-18 04:42:24.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:24.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167554159677362. ------
17-03-18 04:42:24.694 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:24.694 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17400 mm
17-03-18 04:42:24.694 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:24.694 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:42:24.694 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:24.694 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38010, sync = True, waitForSettling = False)
17-03-18 04:42:24.694 -07 000000461 INF: Z Motor: Moving to -0.173999 mm, started at -0.167554 mm, distance = -6.44 um
17-03-18 04:42:24.694 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:42:24.704 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:24.704 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:24.704 -07 000000474 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:42:24.714 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:24.714 -07 000000501 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:24.714 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:24.714 -07 000000501 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:42:24.714 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:24.724 -07 000000461 INF: FPGA: Xmit ZDACW 38010\n [Z Motor]
17-03-18 04:42:24.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:24.734 -07 000000461 INF: FPGA: 'ZDACW 38010' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:42:24.734 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:24.744 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:24.744 -07 000000590 INF: FPGA: Recv ZDACR 38010
17-03-18 04:42:24.754 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:24.754 -07 000000461 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:42:24.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:42:24.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:42:24.894 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:24.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:42:24.904 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:42:24.904 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:24.904 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:24.904 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:42:24.904 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:42:24.914 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:42:24.914 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:24.914 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:42:25.104 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:42:25.104 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 04:42:25.154 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:25.164 -07 000000447 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:42:25.164 -07 000000501 INF: FPGA: 'YRDPOS' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 04:42:25.164 -07 000000501 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:25.164 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:42:25.164 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.847 mm, average velocity = 2.122 mm/sec
17-03-18 04:42:26.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:26.114 -07 000000447 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:42:26.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:26.124 -07 000000501 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:26.154 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:26.154 -07 000000501 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:26.154 -07 000000501 INF: Y Motor: Moved to 69.8618 after 1452 ms (table move)
17-03-18 04:42:26.154 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173999 mm (DAC = 38010)
17-03-18 04:42:26.154 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.154 -07 000000501 INF: FPGA: Recv ZSGSRD 36381
17-03-18 04:42:26.164 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:26.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36375
17-03-18 04:42:26.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.174 -07 000000461 INF: FPGA: Recv ZSGSRD 36376
17-03-18 04:42:26.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.184 -07 000000461 INF: FPGA: Recv ZSGSRD 36377
17-03-18 04:42:26.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.194 -07 000000461 INF: FPGA: Recv ZSGSRD 36369
17-03-18 04:42:26.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.204 -07 000000461 INF: FPGA: Recv ZSGSRD 36371
17-03-18 04:42:26.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.214 -07 000000461 INF: FPGA: Recv ZSGSRD 36377
17-03-18 04:42:26.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.224 -07 000000461 INF: FPGA: Recv ZSGSRD 36380
17-03-18 04:42:26.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.234 -07 000000461 INF: FPGA: Recv ZSGSRD 36375
17-03-18 04:42:26.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:26.244 -07 000000461 INF: FPGA: Recv ZSGSRD 36378
17-03-18 04:42:26.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.254 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:26.254 -07 000000461 INF: FPGA: Recv ZPIEZORD 32372
17-03-18 04:42:26.264 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:26.264 -07 000000591 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.800 V. Piezo Error = -8.8 V.
17-03-18 04:42:26.264 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36376 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36376 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36369 (-173.1 uncal um), Max = 36381 (-173.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:42:26.264 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36376, posNoise = 5, negNoise = 7
17-03-18 04:42:26.264 -07 000000591 INF: Z Motor: After move to -0.173999, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:26.264 -07 000000591 INF: Z Motor: Settle wait time = 1455 ms, measure time = 106 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:42:26.264 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:26.314 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:42:26.314 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:26.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:26.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:26.314 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:26.314 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:26.314 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:26.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:26.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:26.314 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:26.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:42:26.324 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:26.334 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:42:26.334 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:42:26.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:26.384 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:26.684 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:26.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:26.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:26.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:42:26.694 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:26.724 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:26.724 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:26.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 04:42:26.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:42:26.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:26.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:26.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:42:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:26.824 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:26.824 -07 000000461 INF: Autofocus start
17-03-18 04:42:26.824 -07 000000461 INF: MeasureProfile start
17-03-18 04:42:26.824 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:26.834 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:26.834 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:26.834 -07 000000461 INF: MeasureProfile done
17-03-18 04:42:26.834 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:42:26.834 -07 000000461 INF: Autofocus finished
17-03-18 04:42:27.034 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:27.034 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:27.034 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174010492879832. ----------
17-03-18 04:42:27.044 -07 000000610 INF: Cycle	128	Tile	13	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:27.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36507, sync = True, waitForSettling = True)
17-03-18 04:42:27.044 -07 000000610 INF: Z Motor: Moving to -0.167118 mm, started at -0.174010 mm, distance = 6.89 um
17-03-18 04:42:27.044 -07 000000610 INF: FPGA: Xmit ZDACW 36507\n [Z Motor]
17-03-18 04:42:27.044 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:42:27.054 -07 000000610 INF: FPGA: 'ZDACW 36507' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:42:27.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:27.054 -07 000000467 INF: FPGA: Recv ZDACR 36507
17-03-18 04:42:27.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.214 -07 000000608 INF: FPGA: Recv ZSGSRD 35310
17-03-18 04:42:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.224 -07 000000608 INF: FPGA: Recv ZSGSRD 35305
17-03-18 04:42:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.234 -07 000000591 INF: FPGA: Recv ZSGSRD 35305
17-03-18 04:42:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:27.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.244 -07 000000591 INF: FPGA: Recv ZSGSRD 35307
17-03-18 04:42:27.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.254 -07 000000591 INF: FPGA: Recv ZSGSRD 35308
17-03-18 04:42:27.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.264 -07 000000591 INF: FPGA: Recv ZSGSRD 35303
17-03-18 04:42:27.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.274 -07 000000591 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:42:27.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.284 -07 000000591 INF: FPGA: Recv ZSGSRD 35308
17-03-18 04:42:27.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35309
17-03-18 04:42:27.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:27.304 -07 000000591 INF: FPGA: Recv ZSGSRD 35305
17-03-18 04:42:27.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:27.314 -07 000000591 INF: FPGA: Recv ZPIEZORD 30944
17-03-18 04:42:27.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:27.324 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.6 V.
17-03-18 04:42:27.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35306 (-166.3 uncal um), Error = 0.8 uncal um, Median = 35306 (-166.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35303 (-166.2 uncal um), Max = 35310 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:42:27.324 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35306, posNoise = 4, negNoise = 3
17-03-18 04:42:27.324 -07 000000610 INF: Z Motor: After move to -0.167118, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:27.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:42:27.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:27.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:27.324 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:27.324 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:27.324 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:27.324 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:27.324 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:27.324 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:27.324 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:42:27.324 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:27.324 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:27.324 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:27.334 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:27.334 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:27.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:27.334 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:27.344 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:42:27.344 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:42:27.344 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:42:27.344 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:42:27.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36684 150\n [Camera]
17-03-18 04:42:27.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:27.784 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.018051,
17-03-18 04:42:27.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:27.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:27.974 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:27.974 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:27.974 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:42:27.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:27.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:27.974 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:27.974 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:27.974 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:42:28.164 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36684 810
17-03-18 04:42:28.314 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:28.354 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:42:28.354 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:42:28.354 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:28.354 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:42:28.354 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:42:28.354 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:28.354 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:28.354 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:28.354 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:42:28.364 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:42:28.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:28.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:28.524 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:28.524 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:28.524 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:42:28.524 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:28.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:28.524 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:28.524 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:28.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:42:28.714 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:42:28.714 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:28.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36684 150' command took 2 ms to send, 1352 ms to get response, and 1364 ms overall
17-03-18 04:42:28.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:28.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167136585888147. ------
17-03-18 04:42:28.714 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:28.714 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17353 mm
17-03-18 04:42:28.714 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:28.724 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37907, sync = True, waitForSettling = False)
17-03-18 04:42:28.724 -07 000000461 INF: Z Motor: Moving to -0.173527 mm, started at -0.167137 mm, distance = -6.39 um
17-03-18 04:42:28.724 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:28.724 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:28.724 -07 000000461 INF: FPGA: Xmit ZDACW 37907\n [Z Motor]
17-03-18 04:42:28.724 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:42:28.724 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 04:42:28.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:28.734 -07 000000461 INF: FPGA: 'ZDACW 37907' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:28.734 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:28.734 -07 000000590 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:42:28.744 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:42:28.744 -07 000000512 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:28.744 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:28.864 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:28.864 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:28.864 -07 000000512 INF: Y Motor: Moving 1344 steps-22
17-03-18 04:42:28.864 -07 000000590 INF: FPGA: Recv ZDACR 37907
17-03-18 04:42:28.874 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 04:42:28.874 -07 000000461 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-18 04:42:28.874 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:28.904 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:42:28.904 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:42:28.904 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:28.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:42:28.914 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:42:28.914 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:28.914 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:28.914 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:28.914 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:42:28.914 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:42:28.944 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:28.944 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 118 ms to send, 83 ms to get response, and 221 ms overall
17-03-18 04:42:29.244 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:42:29.244 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:42:29.294 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:29.304 -07 000000461 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:42:29.314 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:29.314 -07 000000512 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:29.314 -07 000000512 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:42:29.314 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.190 mm/sec
17-03-18 04:42:30.264 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:30.264 -07 000000590 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:42:30.274 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:30.274 -07 000000512 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:30.304 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:30.304 -07 000000512 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:30.304 -07 000000512 INF: Y Motor: Moved to 70.6870 after 1579 ms (table move)
17-03-18 04:42:30.304 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173527 mm (DAC = 37907)
17-03-18 04:42:30.304 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.304 -07 000000461 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:42:30.314 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:30.314 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.314 -07 000000424 INF: FPGA: Recv ZSGSRD 36297
17-03-18 04:42:30.324 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.324 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.324 -07 000000512 INF: FPGA: Recv ZSGSRD 36300
17-03-18 04:42:30.334 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.334 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.334 -07 000000424 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:42:30.344 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.344 -07 000000512 INF: FPGA: Recv ZSGSRD 36297
17-03-18 04:42:30.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.354 -07 000000474 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:42:30.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.364 -07 000000461 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:42:30.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.374 -07 000000474 INF: FPGA: Recv ZSGSRD 36306
17-03-18 04:42:30.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.384 -07 000000581 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:42:30.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:30.394 -07 000000474 INF: FPGA: Recv ZSGSRD 36303
17-03-18 04:42:30.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.404 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:30.404 -07 000000512 INF: FPGA: Recv ZPIEZORD 32293
17-03-18 04:42:30.414 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:30.414 -07 000000501 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.9 V.
17-03-18 04:42:30.414 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36301 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36301 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36297 (-172.6 uncal um), Max = 36306 (-172.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:30.414 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36301, posNoise = 5, negNoise = 4
17-03-18 04:42:30.414 -07 000000501 INF: Z Motor: After move to -0.173527, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:30.414 -07 000000501 INF: Z Motor: Settle wait time = 1584 ms, measure time = 106 ms (allowed 150 ms), total time = 1690 ms
17-03-18 04:42:30.414 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:30.464 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 04:42:30.464 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:30.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:30.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:30.464 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:30.464 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:30.464 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:30.464 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:30.464 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:30.464 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:30.474 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:30.474 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:30.484 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:42:30.484 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:42:30.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:30.524 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:30.824 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:30.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:30.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:30.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:30.864 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:30.864 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:30.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:42:30.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:42:30.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:30.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:30.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:42:30.964 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:30.964 -07 000000512 INF: Autofocus start
17-03-18 04:42:30.964 -07 000000512 INF: MeasureProfile start
17-03-18 04:42:30.964 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:30.974 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:30.974 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:30.974 -07 000000512 INF: MeasureProfile done
17-03-18 04:42:30.974 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:42:30.974 -07 000000512 INF: Autofocus finished
17-03-18 04:42:31.174 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:31.174 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:31.174 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.173528676969199. ----------
17-03-18 04:42:31.174 -07 000000610 INF: Cycle	128	Tile	14	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:31.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36440, sync = True, waitForSettling = True)
17-03-18 04:42:31.184 -07 000000610 INF: Z Motor: Moving to -0.166812 mm, started at -0.173529 mm, distance = 6.72 um
17-03-18 04:42:31.184 -07 000000610 INF: FPGA: Xmit ZDACW 36440\n [Z Motor]
17-03-18 04:42:31.184 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:42:31.194 -07 000000610 INF: FPGA: 'ZDACW 36440' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:42:31.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:31.194 -07 000000467 INF: FPGA: Recv ZDACR 36440
17-03-18 04:42:31.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:31.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35252
17-03-18 04:42:31.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:31.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.364 -07 000000461 INF: FPGA: Recv ZSGSRD 35256
17-03-18 04:42:31.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.374 -07 000000581 INF: FPGA: Recv ZSGSRD 35259
17-03-18 04:42:31.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.384 -07 000000461 INF: FPGA: Recv ZSGSRD 35258
17-03-18 04:42:31.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.394 -07 000000581 INF: FPGA: Recv ZSGSRD 35256
17-03-18 04:42:31.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35260
17-03-18 04:42:31.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35258
17-03-18 04:42:31.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.424 -07 000000461 INF: FPGA: Recv ZSGSRD 35253
17-03-18 04:42:31.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.434 -07 000000474 INF: FPGA: Recv ZSGSRD 35258
17-03-18 04:42:31.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:31.444 -07 000000581 INF: FPGA: Recv ZSGSRD 35256
17-03-18 04:42:31.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:31.454 -07 000000501 INF: FPGA: Recv ZPIEZORD 30915
17-03-18 04:42:31.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:31.464 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.6 V.
17-03-18 04:42:31.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35257 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35257 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35252 (-165.9 uncal um), Max = 35260 (-166.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:42:31.464 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35257, posNoise = 3, negNoise = 5
17-03-18 04:42:31.464 -07 000000610 INF: Z Motor: After move to -0.166812, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:31.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:42:31.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:31.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:31.464 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:31.464 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:31.464 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:31.464 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:31.464 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:31.464 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:31.464 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:31.464 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:31.464 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:31.464 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:31.474 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:31.474 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:31.474 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:31.474 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:31.484 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:42:31.484 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:31.484 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:42:31.484 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:31.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36616 150\n [Camera]
17-03-18 04:42:31.684 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:31.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:32.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:32.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:32.114 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:32.114 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:32.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:32.114 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:32.114 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:32.114 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:32.124 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:32.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:32.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36616 810
17-03-18 04:42:32.454 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:32.494 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:42:32.494 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:42:32.494 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:32.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:42:32.494 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:42:32.494 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:32.494 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:32.494 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:32.494 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:42:32.504 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:42:32.654 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:32.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:32.654 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:32.654 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:32.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:32.664 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:32.664 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:32.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:42:32.664 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:32.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:42:32.844 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:42:32.844 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:32.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36616 150' command took 2 ms to send, 1358 ms to get response, and 1363 ms overall
17-03-18 04:42:32.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:32.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68701171875, Z-Position -0.166821799493201. ------
17-03-18 04:42:32.854 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:32.854 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17350 mm
17-03-18 04:42:32.854 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:32.854 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:42:32.854 -07 000000581 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 04:42:32.854 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37901, sync = True, waitForSettling = False)
17-03-18 04:42:32.854 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:32.854 -07 000000461 INF: Z Motor: Moving to -0.173500 mm, started at -0.166822 mm, distance = -6.68 um
17-03-18 04:42:32.974 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 04:42:32.974 -07 000000461 INF: FPGA: Xmit ZDACW 37901\n [Z Motor]
17-03-18 04:42:32.984 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:32.984 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:42:32.984 -07 000000461 INF: FPGA: 'ZDACW 37901' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 04:42:32.984 -07 000000569 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:42:32.994 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 04:42:32.994 -07 000000581 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:32.994 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:32.994 -07 000000581 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:32.994 -07 000000581 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:42:33.004 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:33.004 -07 000000569 INF: FPGA: Recv ZDACR 37901
17-03-18 04:42:33.014 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:33.014 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:33.014 -07 000000461 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-18 04:42:33.054 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:42:33.054 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:42:33.054 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:33.064 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:42:33.064 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:42:33.064 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:33.064 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:33.064 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:42:33.064 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:33.074 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:42:33.144 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.015368,
17-03-18 04:42:33.194 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:33.194 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 216 ms overall
17-03-18 04:42:33.384 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:42:33.384 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:42:33.434 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:33.434 -07 000000512 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:42:33.444 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:33.444 -07 000000581 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:33.444 -07 000000581 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:42:33.444 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.152 mm/sec
17-03-18 04:42:34.394 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:34.394 -07 000000467 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:42:34.404 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:34.404 -07 000000581 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:34.434 -07 000000581 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:34.434 -07 000000581 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:34.434 -07 000000581 INF: Y Motor: Moved to 71.5176 after 1573 ms (table move)
17-03-18 04:42:34.434 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173500 mm (DAC = 37901)
17-03-18 04:42:34.434 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.434 -07 000000501 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:42:34.444 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:34.444 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.444 -07 000000581 INF: FPGA: Recv ZSGSRD 36297
17-03-18 04:42:34.454 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.454 -07 000000501 INF: FPGA: Recv ZSGSRD 36303
17-03-18 04:42:34.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.464 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.464 -07 000000467 INF: FPGA: Recv ZSGSRD 36285
17-03-18 04:42:34.474 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.474 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36292
17-03-18 04:42:34.484 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.484 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.484 -07 000000467 INF: FPGA: Recv ZSGSRD 36305
17-03-18 04:42:34.494 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.494 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.494 -07 000000424 INF: FPGA: Recv ZSGSRD 36292
17-03-18 04:42:34.504 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.504 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.504 -07 000000501 INF: FPGA: Recv ZSGSRD 36296
17-03-18 04:42:34.514 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.514 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.514 -07 000000467 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:42:34.524 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:34.524 -07 000000512 INF: FPGA: Recv ZSGSRD 36297
17-03-18 04:42:34.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.534 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:34.534 -07 000000467 INF: FPGA: Recv ZPIEZORD 32306
17-03-18 04:42:34.544 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:34.544 -07 000000590 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.8 V.
17-03-18 04:42:34.544 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36297 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36297 (-172.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36285 (-172.5 uncal um), Max = 36305 (-172.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 04:42:34.544 -07 000000590 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36297, posNoise = 8, negNoise = 12
17-03-18 04:42:34.544 -07 000000590 INF: Z Motor: After move to -0.173500, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:34.544 -07 000000590 INF: Z Motor: Settle wait time = 1577 ms, measure time = 106 ms (allowed 150 ms), total time = 1683 ms
17-03-18 04:42:34.544 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:34.594 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 04:42:34.594 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:34.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:34.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:34.594 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:34.594 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:34.594 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:34.594 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:34.594 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:42:34.594 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:34.604 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:34.604 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:34.614 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:42:34.614 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:42:34.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:34.664 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:34.964 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:34.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:34.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:34.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:35.004 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:35.004 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:35.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:42:35.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:42:35.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:35.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:35.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:42:35.104 -07 000000512 INF: Autofocus start
17-03-18 04:42:35.104 -07 000000512 INF: MeasureProfile start
17-03-18 04:42:35.104 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:35.104 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:35.114 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:35.114 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:35.114 -07 000000512 INF: MeasureProfile done
17-03-18 04:42:35.114 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:42:35.114 -07 000000512 INF: Autofocus finished
17-03-18 04:42:35.314 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:35.314 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:35.314 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173502980120632. ----------
17-03-18 04:42:35.314 -07 000000610 INF: Cycle	128	Tile	15	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:35.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36398, sync = True, waitForSettling = True)
17-03-18 04:42:35.324 -07 000000610 INF: Z Motor: Moving to -0.166619 mm, started at -0.173503 mm, distance = 6.88 um
17-03-18 04:42:35.324 -07 000000610 INF: FPGA: Xmit ZDACW 36398\n [Z Motor]
17-03-18 04:42:35.324 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:42:35.334 -07 000000610 INF: FPGA: 'ZDACW 36398' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:42:35.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:35.334 -07 000000382 INF: FPGA: Recv ZDACR 36398
17-03-18 04:42:35.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:35.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.494 -07 000000501 INF: FPGA: Recv ZSGSRD 35230
17-03-18 04:42:35.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:35.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.504 -07 000000480 INF: FPGA: Recv ZSGSRD 35231
17-03-18 04:42:35.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.514 -07 000000501 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:42:35.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.524 -07 000000581 INF: FPGA: Recv ZSGSRD 35224
17-03-18 04:42:35.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.534 -07 000000512 INF: FPGA: Recv ZSGSRD 35229
17-03-18 04:42:35.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.544 -07 000000461 INF: FPGA: Recv ZSGSRD 35230
17-03-18 04:42:35.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.554 -07 000000467 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:42:35.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.564 -07 000000461 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:42:35.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.574 -07 000000590 INF: FPGA: Recv ZSGSRD 35228
17-03-18 04:42:35.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:35.584 -07 000000581 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:42:35.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:35.594 -07 000000590 INF: FPGA: Recv ZPIEZORD 30888
17-03-18 04:42:35.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:35.604 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.6 V.
17-03-18 04:42:35.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35227 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35223 (-165.7 uncal um), Max = 35231 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:35.604 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35227, posNoise = 4, negNoise = 4
17-03-18 04:42:35.604 -07 000000610 INF: Z Motor: After move to -0.166619, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:35.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:42:35.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:35.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:35.604 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:35.604 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:35.604 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:35.604 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:35.604 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:35.604 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:35.604 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:35.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:35.604 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:35.604 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:35.614 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:35.614 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:35.614 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:35.614 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:35.624 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:42:35.624 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:35.624 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:42:35.624 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:42:35.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36575 150\n [Camera]
17-03-18 04:42:35.824 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:36.244 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:36.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:36.254 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:36.254 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:36.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:36.254 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:36.254 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:36.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:36.264 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:36.264 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:36.444 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36575 810
17-03-18 04:42:36.594 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:36.634 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:42:36.634 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:42:36.634 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:36.634 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:42:36.634 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:42:36.634 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:36.634 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:36.634 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:42:36.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:36.644 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:42:36.694 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:36.794 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:36.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:36.794 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:36.794 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:36.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:42:36.794 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:36.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:36.794 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:36.794 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:36.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:42:36.984 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:36.984 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:36.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36575 150' command took 2 ms to send, 1358 ms to get response, and 1363 ms overall
17-03-18 04:42:36.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:36.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166629073128948. ------
17-03-18 04:42:36.994 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:36.994 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17315 mm
17-03-18 04:42:36.994 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:36.994 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:36.994 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37825, sync = True, waitForSettling = False)
17-03-18 04:42:36.994 -07 000000455 INF: Z Motor: Moving to -0.173152 mm, started at -0.166629 mm, distance = -6.52 um
17-03-18 04:42:36.994 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:42:36.994 -07 000000461 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:42:37.004 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:37.004 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:37.004 -07 000000382 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:42:37.014 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:37.014 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:42:37.014 -07 000000461 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:37.014 -07 000000461 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:37.014 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:42:37.024 -07 000000455 INF: FPGA: Xmit ZDACW 37825\n [Z Motor]
17-03-18 04:42:37.024 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:42:37.034 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:37.034 -07 000000455 INF: FPGA: 'ZDACW 37825' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 04:42:37.044 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:37.044 -07 000000591 INF: FPGA: Recv ZDACR 37825
17-03-18 04:42:37.054 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:37.054 -07 000000455 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:42:37.194 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:42:37.194 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:42:37.194 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:37.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:42:37.204 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:42:37.204 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:37.204 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:37.204 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:37.204 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:42:37.204 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:42:37.214 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:37.214 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:42:37.404 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:42:37.404 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:42:37.454 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:37.464 -07 000000480 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:42:37.464 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:42:37.464 -07 000000461 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:37.464 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:42:37.464 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 04:42:38.414 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:38.414 -07 000000608 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:42:38.424 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:38.424 -07 000000461 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:38.454 -07 000000461 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:38.454 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:38.454 -07 000000461 INF: Y Motor: Moved to 72.3481 after 1453 ms (table move)
17-03-18 04:42:38.454 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173152 mm (DAC = 37825)
17-03-18 04:42:38.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.454 -07 000000480 INF: FPGA: Recv ZSGSRD 36247
17-03-18 04:42:38.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:38.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.464 -07 000000424 INF: FPGA: Recv ZSGSRD 36239
17-03-18 04:42:38.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:38.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.474 -07 000000480 INF: FPGA: Recv ZSGSRD 36242
17-03-18 04:42:38.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:38.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.484 -07 000000590 INF: FPGA: Recv ZSGSRD 36239
17-03-18 04:42:38.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:38.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.504 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.008536,
17-03-18 04:42:38.504 -07 000000590 INF: FPGA: Recv ZSGSRD 36247
17-03-18 04:42:38.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:38.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.534 -07 000000512 INF: FPGA: Recv ZSGSRD 36244
17-03-18 04:42:38.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:38.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.544 -07 000000608 INF: FPGA: Recv ZSGSRD 36242
17-03-18 04:42:38.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:38.564 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.564 -07 000000447 INF: FPGA: Recv ZSGSRD 36246
17-03-18 04:42:38.574 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:38.584 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.584 -07 000000447 INF: FPGA: Recv ZSGSRD 36242
17-03-18 04:42:38.594 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:42:38.594 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:38.594 -07 000000461 INF: FPGA: Recv ZSGSRD 36242
17-03-18 04:42:38.604 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:38.604 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:38.604 -07 000000512 INF: FPGA: Recv ZPIEZORD 32216
17-03-18 04:42:38.614 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:38.614 -07 000000626 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.9 V.
17-03-18 04:42:38.614 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36243 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36242 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36239 (-172.2 uncal um), Max = 36247 (-172.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:38.614 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36243, posNoise = 4, negNoise = 4
17-03-18 04:42:38.614 -07 000000626 INF: Z Motor: After move to -0.173152, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:38.614 -07 000000626 INF: Z Motor: Settle wait time = 1457 ms, measure time = 155 ms (allowed 150 ms), total time = 1612 ms
17-03-18 04:42:38.614 -07 000000626 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 04:42:38.614 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:42:38.614 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:38.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:38.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:38.614 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:38.614 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:38.614 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:38.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:38.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:38.614 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:38.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:38.624 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:38.634 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:42:38.634 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:42:38.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:38.684 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:38.984 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:38.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:38.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:38.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:42:39.014 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:39.024 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:39.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:42:39.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:42:39.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:39.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:39.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:42:39.124 -07 000000512 INF: Autofocus start
17-03-18 04:42:39.124 -07 000000512 INF: MeasureProfile start
17-03-18 04:42:39.124 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:39.124 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:39.134 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:39.134 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:39.134 -07 000000512 INF: MeasureProfile done
17-03-18 04:42:39.134 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:42:39.134 -07 000000512 INF: Autofocus finished
17-03-18 04:42:39.334 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:39.334 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:39.334 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173156072664977. ----------
17-03-18 04:42:39.334 -07 000000610 INF: Cycle	128	Tile	16	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:39.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36340, sync = True, waitForSettling = True)
17-03-18 04:42:39.344 -07 000000610 INF: Z Motor: Moving to -0.166354 mm, started at -0.173156 mm, distance = 6.80 um
17-03-18 04:42:39.344 -07 000000610 INF: FPGA: Xmit ZDACW 36340\n [Z Motor]
17-03-18 04:42:39.344 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:39.354 -07 000000610 INF: FPGA: 'ZDACW 36340' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:39.354 -07 000000461 INF: FPGA: Recv ZDACR 36340
17-03-18 04:42:39.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:39.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.514 -07 000000447 INF: FPGA: Recv ZSGSRD 35183
17-03-18 04:42:39.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:39.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.524 -07 000000608 INF: FPGA: Recv ZSGSRD 35185
17-03-18 04:42:39.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.534 -07 000000461 INF: FPGA: Recv ZSGSRD 35188
17-03-18 04:42:39.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.544 -07 000000512 INF: FPGA: Recv ZSGSRD 35187
17-03-18 04:42:39.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.554 -07 000000424 INF: FPGA: Recv ZSGSRD 35183
17-03-18 04:42:39.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35184
17-03-18 04:42:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.574 -07 000000424 INF: FPGA: Recv ZSGSRD 35188
17-03-18 04:42:39.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.584 -07 000000626 INF: FPGA: Recv ZSGSRD 35187
17-03-18 04:42:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.594 -07 000000424 INF: FPGA: Recv ZSGSRD 35181
17-03-18 04:42:39.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:39.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35186
17-03-18 04:42:39.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:39.614 -07 000000590 INF: FPGA: Recv ZPIEZORD 30856
17-03-18 04:42:39.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:39.624 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.545 V. Piezo Error = -9.5 V.
17-03-18 04:42:39.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35185 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35186 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35181 (-165.5 uncal um), Max = 35188 (-165.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:42:39.624 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35185, posNoise = 3, negNoise = 4
17-03-18 04:42:39.624 -07 000000610 INF: Z Motor: After move to -0.166354, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:39.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:42:39.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:39.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:39.624 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:39.624 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:39.624 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:39.624 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:39.624 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:39.624 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:39.624 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:42:39.624 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:39.624 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:39.624 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:39.624 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:39.624 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:39.634 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:39.634 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:39.634 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:42:39.634 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:39.644 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:42:39.644 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:39.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36516 150\n [Camera]
17-03-18 04:42:39.844 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:40.264 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-18 04:42:40.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-18 04:42:40.264 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:40.274 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:40.274 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:42:40.274 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-18 04:42:40.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-18 04:42:40.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:40.274 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:40.274 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:42:40.454 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36516 810
17-03-18 04:42:40.604 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:40.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:42:40.644 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:42:40.644 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:40.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:42:40.644 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:42:40.644 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:40.654 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:40.654 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:42:40.654 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:40.654 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:42:40.814 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:42:40.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:42:40.814 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:40.814 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:40.814 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:42:40.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:42:40.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:42:40.814 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:40.824 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:40.824 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:42:41.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:42:41.004 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:41.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36516 150' command took 3 ms to send, 1355 ms to get response, and 1364 ms overall
17-03-18 04:42:41.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:41.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166359256218994. ------
17-03-18 04:42:41.134 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:41.134 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17282 mm
17-03-18 04:42:41.134 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:41.134 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:41.134 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:42:41.134 -07 000000590 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:42:41.134 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37752, sync = True, waitForSettling = False)
17-03-18 04:42:41.134 -07 000000512 INF: Z Motor: Moving to -0.172818 mm, started at -0.166359 mm, distance = -6.46 um
17-03-18 04:42:41.144 -07 000000512 INF: FPGA: Xmit ZDACW 37752\n [Z Motor]
17-03-18 04:42:41.144 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:41.144 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:42:41.154 -07 000000512 INF: FPGA: 'ZDACW 37752' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:42:41.154 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:41.154 -07 000000618 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:42:41.164 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:42:41.164 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:41.164 -07 000000590 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:41.164 -07 000000590 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:41.164 -07 000000590 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:42:41.174 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:41.174 -07 000000618 INF: FPGA: Recv ZDACR 37752
17-03-18 04:42:41.184 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:41.184 -07 000000512 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:42:41.184 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:41.214 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:42:41.214 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:42:41.214 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:41.224 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:41.224 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:42:41.224 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:42:41.224 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:41.224 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:42:41.224 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:42:41.224 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:42:41.364 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:41.364 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 04:42:41.554 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:42:41.554 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:42:41.604 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:41.604 -07 000000424 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:42:41.614 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:42:41.614 -07 000000590 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:41.614 -07 000000590 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:42:41.614 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.122 mm/sec
17-03-18 04:42:41.694 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:41.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:42.564 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:42.564 -07 000000626 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:42:42.574 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:42.574 -07 000000590 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:42.604 -07 000000590 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:42.604 -07 000000590 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:42.604 -07 000000590 INF: Y Motor: Moved to 73.1748 after 1462 ms (table move)
17-03-18 04:42:42.604 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172818 mm (DAC = 37752)
17-03-18 04:42:42.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.604 -07 000000618 INF: FPGA: Recv ZSGSRD 36198
17-03-18 04:42:42.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:42.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36186
17-03-18 04:42:42.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.624 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.624 -07 000000625 INF: FPGA: Recv ZSGSRD 36188
17-03-18 04:42:42.634 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.634 -07 000000502 INF: FPGA: Recv ZSGSRD 36194
17-03-18 04:42:42.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.644 -07 000000625 INF: FPGA: Recv ZSGSRD 36201
17-03-18 04:42:42.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36190
17-03-18 04:42:42.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.664 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.664 -07 000000590 INF: FPGA: Recv ZSGSRD 36189
17-03-18 04:42:42.674 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.674 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.674 -07 000000618 INF: FPGA: Recv ZSGSRD 36194
17-03-18 04:42:42.684 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.684 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.684 -07 000000424 INF: FPGA: Recv ZSGSRD 36197
17-03-18 04:42:42.694 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.694 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:42.694 -07 000000618 INF: FPGA: Recv ZSGSRD 36196
17-03-18 04:42:42.704 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.704 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:42.704 -07 000000502 INF: FPGA: Recv ZPIEZORD 32179
17-03-18 04:42:42.714 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:42.714 -07 000000447 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.9 V.
17-03-18 04:42:42.714 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36193 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36194 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36186 (-171.9 uncal um), Max = 36201 (-172.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:42:42.714 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36193, posNoise = 8, negNoise = 7
17-03-18 04:42:42.714 -07 000000447 INF: Z Motor: After move to -0.172818, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:42.714 -07 000000447 INF: Z Motor: Settle wait time = 1466 ms, measure time = 107 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:42:42.714 -07 000000447 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:42.764 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 04:42:42.764 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:42.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:42.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:42.764 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:42.764 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:42.764 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:42.764 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:42.764 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:42:42.764 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:42.764 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:42.764 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:42.784 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:42:42.784 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:42:42.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:42.834 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:43.124 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:43.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:43.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:43.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:43.164 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:43.174 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:43.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:42:43.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:42:43.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:43.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:42:43.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:42:43.274 -07 000000590 INF: Autofocus start
17-03-18 04:42:43.274 -07 000000590 INF: MeasureProfile start
17-03-18 04:42:43.284 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:43.284 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:43.294 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:43.294 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:43.294 -07 000000590 INF: MeasureProfile done
17-03-18 04:42:43.294 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:42:43.294 -07 000000590 INF: Autofocus finished
17-03-18 04:42:43.494 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:43.494 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 3 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 04:42:43.494 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172834862057889. ----------
17-03-18 04:42:43.504 -07 000000610 INF: Cycle	128	Tile	17	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:43.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36267, sync = True, waitForSettling = True)
17-03-18 04:42:43.504 -07 000000610 INF: Z Motor: Moving to -0.166020 mm, started at -0.172835 mm, distance = 6.82 um
17-03-18 04:42:43.504 -07 000000610 INF: FPGA: Xmit ZDACW 36267\n [Z Motor]
17-03-18 04:42:43.504 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:43.514 -07 000000610 INF: FPGA: 'ZDACW 36267' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:42:43.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:43.514 -07 000000502 INF: FPGA: Recv ZDACR 36267
17-03-18 04:42:43.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:43.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.674 -07 000000502 INF: FPGA: Recv ZSGSRD 35138
17-03-18 04:42:43.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:43.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.684 -07 000000625 INF: FPGA: Recv ZSGSRD 35136
17-03-18 04:42:43.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35134
17-03-18 04:42:43.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35131
17-03-18 04:42:43.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.714 -07 000000502 INF: FPGA: Recv ZSGSRD 35132
17-03-18 04:42:43.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.724 -07 000000502 INF: FPGA: Recv ZSGSRD 35135
17-03-18 04:42:43.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.734 -07 000000625 INF: FPGA: Recv ZSGSRD 35136
17-03-18 04:42:43.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.744 -07 000000590 INF: FPGA: Recv ZSGSRD 35135
17-03-18 04:42:43.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35129
17-03-18 04:42:43.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:43.764 -07 000000512 INF: FPGA: Recv ZSGSRD 35135
17-03-18 04:42:43.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:43.774 -07 000000590 INF: FPGA: Recv ZPIEZORD 30752
17-03-18 04:42:43.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:43.784 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.6 V.
17-03-18 04:42:43.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35134 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35135 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35129 (-165.1 uncal um), Max = 35138 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:42:43.784 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35134, posNoise = 4, negNoise = 5
17-03-18 04:42:43.784 -07 000000610 INF: Z Motor: After move to -0.166020, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:43.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:42:43.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:43.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:43.784 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:43.784 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:43.784 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:43.784 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:43.784 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:43.784 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:43.784 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:43.784 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:43.784 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:43.784 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:43.784 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:42:43.794 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:43.794 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:43.794 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:43.794 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:42:43.794 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:42:43.794 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:42:43.804 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:42:43.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36444 150\n [Camera]
17-03-18 04:42:43.904 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.041198,
17-03-18 04:42:44.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:44.424 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:44.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:44.424 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:44.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:44.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:44.434 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:44.434 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:44.434 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:44.434 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:44.434 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:44.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36444 810
17-03-18 04:42:44.774 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:44.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:42:44.814 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:42:44.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:44.814 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:42:44.814 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:42:44.814 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:44.814 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:44.814 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:42:44.814 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:44.824 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:42:44.974 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:44.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:44.974 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:44.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:44.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:44.984 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:44.984 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:44.984 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:42:44.984 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:44.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:42:45.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:42:45.164 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:45.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36444 150' command took 2 ms to send, 1358 ms to get response, and 1365 ms overall
17-03-18 04:42:45.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:45.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166031621399764. ------
17-03-18 04:42:45.174 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:45.174 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17184 mm
17-03-18 04:42:45.174 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:45.174 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:42:45.174 -07 000000512 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:42:45.174 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37538, sync = True, waitForSettling = False)
17-03-18 04:42:45.174 -07 000000606 INF: Z Motor: Moving to -0.171838 mm, started at -0.166032 mm, distance = -5.81 um
17-03-18 04:42:45.174 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:45.184 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:45.184 -07 000000606 INF: FPGA: Xmit ZDACW 37538\n [Z Motor]
17-03-18 04:42:45.184 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:45.194 -07 000000606 INF: FPGA: 'ZDACW 37538' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:42:45.194 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:45.194 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:42:45.204 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:45.204 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:42:45.204 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:45.204 -07 000000512 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:45.204 -07 000000512 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:42:45.314 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:45.314 -07 000000501 INF: FPGA: Recv ZDACR 37538
17-03-18 04:42:45.324 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 04:42:45.324 -07 000000606 INF: Z Motor: MoveAbsStepped took 142 ms (did NOT wait for settling yet))
17-03-18 04:42:45.324 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:45.384 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:42:45.384 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:42:45.384 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:45.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:42:45.384 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:42:45.384 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:45.384 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:45.384 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:42:45.394 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:45.394 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:42:45.404 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:45.404 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 85 ms to get response, and 222 ms overall
17-03-18 04:42:45.694 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:42:45.694 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 04:42:45.734 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:45.744 -07 000000591 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:42:45.744 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:42:45.744 -07 000000512 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:45.744 -07 000000512 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:42:45.744 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 497 ms, distance = 0.848 mm, average velocity = 1.706 mm/sec
17-03-18 04:42:46.694 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:46.694 -07 000000591 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:42:46.694 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:46.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:46.704 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.704 -07 000000512 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:46.724 -07 000000512 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:46.724 -07 000000512 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:46.724 -07 000000512 INF: Y Motor: Moved to 74.0068 after 1546 ms (table move)
17-03-18 04:42:46.724 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171838 mm (DAC = 37538)
17-03-18 04:42:46.724 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.734 -07 000000606 INF: FPGA: Recv ZSGSRD 36035
17-03-18 04:42:46.734 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:42:46.734 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.734 -07 000000502 INF: FPGA: Recv ZSGSRD 36039
17-03-18 04:42:46.744 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.744 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.744 -07 000000480 INF: FPGA: Recv ZSGSRD 36040
17-03-18 04:42:46.754 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.754 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.754 -07 000000512 INF: FPGA: Recv ZSGSRD 36033
17-03-18 04:42:46.764 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.764 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.764 -07 000000480 INF: FPGA: Recv ZSGSRD 36043
17-03-18 04:42:46.774 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.774 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.774 -07 000000502 INF: FPGA: Recv ZSGSRD 36034
17-03-18 04:42:46.784 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.784 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36037
17-03-18 04:42:46.794 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.794 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.794 -07 000000501 INF: FPGA: Recv ZSGSRD 36045
17-03-18 04:42:46.804 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.804 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.804 -07 000000502 INF: FPGA: Recv ZSGSRD 36036
17-03-18 04:42:46.814 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.814 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:46.814 -07 000000501 INF: FPGA: Recv ZSGSRD 36029
17-03-18 04:42:46.824 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.824 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:46.824 -07 000000480 INF: FPGA: Recv ZPIEZORD 31987
17-03-18 04:42:46.834 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:46.834 -07 000000474 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -8.9 V.
17-03-18 04:42:46.834 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36037 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36029 (-170.9 uncal um), Max = 36045 (-171.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:42:46.834 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36037, posNoise = 8, negNoise = 8
17-03-18 04:42:46.834 -07 000000474 INF: Z Motor: After move to -0.171838, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:46.834 -07 000000474 INF: Z Motor: Settle wait time = 1549 ms, measure time = 103 ms (allowed 150 ms), total time = 1652 ms
17-03-18 04:42:46.834 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:46.884 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-18 04:42:46.884 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:46.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:46.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:46.884 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:46.884 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:46.884 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:46.884 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:46.884 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:42:46.884 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:46.894 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:46.894 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:46.904 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:42:46.904 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:42:46.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:46.954 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:47.254 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:47.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:47.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:47.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:42:47.294 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:42:47.294 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:47.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:42:47.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:42:47.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:47.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:47.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:42:47.394 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:47.394 -07 000000581 INF: Autofocus start
17-03-18 04:42:47.394 -07 000000581 INF: MeasureProfile start
17-03-18 04:42:47.394 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:47.404 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:47.404 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:47.404 -07 000000581 INF: MeasureProfile done
17-03-18 04:42:47.404 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:42:47.404 -07 000000581 INF: Autofocus finished
17-03-18 04:42:47.604 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:47.604 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:47.604 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.171832684963775. ----------
17-03-18 04:42:47.604 -07 000000610 INF: Cycle	128	Tile	18	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:47.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36071, sync = True, waitForSettling = True)
17-03-18 04:42:47.614 -07 000000610 INF: Z Motor: Moving to -0.165122 mm, started at -0.171833 mm, distance = 6.71 um
17-03-18 04:42:47.614 -07 000000610 INF: FPGA: Xmit ZDACW 36071\n [Z Motor]
17-03-18 04:42:47.614 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:42:47.624 -07 000000610 INF: FPGA: 'ZDACW 36071' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:47.624 -07 000000455 INF: FPGA: Recv ZDACR 36071
17-03-18 04:42:47.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:47.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.784 -07 000000455 INF: FPGA: Recv ZSGSRD 34996
17-03-18 04:42:47.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:47.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.794 -07 000000581 INF: FPGA: Recv ZSGSRD 34996
17-03-18 04:42:47.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.804 -07 000000581 INF: FPGA: Recv ZSGSRD 34983
17-03-18 04:42:47.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.814 -07 000000569 INF: FPGA: Recv ZSGSRD 34992
17-03-18 04:42:47.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:47.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.824 -07 000000455 INF: FPGA: Recv ZSGSRD 34996
17-03-18 04:42:47.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.834 -07 000000581 INF: FPGA: Recv ZSGSRD 34999
17-03-18 04:42:47.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.844 -07 000000455 INF: FPGA: Recv ZSGSRD 34990
17-03-18 04:42:47.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.854 -07 000000455 INF: FPGA: Recv ZSGSRD 34992
17-03-18 04:42:47.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.864 -07 000000455 INF: FPGA: Recv ZSGSRD 34996
17-03-18 04:42:47.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:47.874 -07 000000581 INF: FPGA: Recv ZSGSRD 34992
17-03-18 04:42:47.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:47.884 -07 000000581 INF: FPGA: Recv ZPIEZORD 30605
17-03-18 04:42:47.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:47.894 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.504 V. Piezo Error = -9.7 V.
17-03-18 04:42:47.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34993 (-164.3 uncal um), Error = 0.9 uncal um, Median = 34994 (-164.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 34983 (-164.2 uncal um), Max = 34999 (-164.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:42:47.894 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34993, posNoise = 6, negNoise = 10
17-03-18 04:42:47.894 -07 000000610 INF: Z Motor: After move to -0.165122, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:47.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:42:47.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:47.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:47.894 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:47.894 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:47.894 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:47.894 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:47.894 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:47.894 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:47.894 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:47.894 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:47.894 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:47.894 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:47.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:47.904 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:47.904 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:47.904 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:47.904 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:42:47.904 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:42:47.914 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:42:47.914 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:42:47.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36248 150\n [Camera]
17-03-18 04:42:48.114 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 04:42:48.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:48.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:48.544 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:48.544 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:48.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:48.544 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:48.544 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:48.544 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:42:48.544 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:48.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:42:48.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:42:48.924 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:42:48.924 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:48.924 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:42:48.924 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:42:48.924 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:48.924 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:48.924 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:48.924 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:42:48.934 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:42:48.934 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36248 810
17-03-18 04:42:48.934 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:42:49.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:49.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:49.084 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:49.084 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:49.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 04:42:49.084 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:49.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:49.094 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:49.094 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:49.094 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:42:49.264 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.041198,
17-03-18 04:42:49.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:42:49.274 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:49.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36248 150' command took 2 ms to send, 1358 ms to get response, and 1363 ms overall
17-03-18 04:42:49.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:42:49.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165125807487776. ------
17-03-18 04:42:49.284 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17150 mm
17-03-18 04:42:49.284 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:49.284 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37464, sync = True, waitForSettling = False)
17-03-18 04:42:49.284 -07 000000447 INF: Z Motor: Moving to -0.171499 mm, started at -0.165126 mm, distance = -6.37 um
17-03-18 04:42:49.284 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:42:49.284 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 04:42:49.304 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:49.304 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:49.314 -07 000000447 INF: FPGA: Xmit ZDACW 37464\n [Z Motor]
17-03-18 04:42:49.314 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:42:49.314 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:42:49.324 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:49.324 -07 000000447 INF: FPGA: 'ZDACW 37464' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 04:42:49.324 -07 000000590 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:42:49.334 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 04:42:49.334 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:49.334 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:49.334 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:42:49.334 -07 000000424 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:42:49.344 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:49.344 -07 000000461 INF: FPGA: Recv ZDACR 37464
17-03-18 04:42:49.354 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:42:49.354 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:49.354 -07 000000447 INF: Z Motor: MoveAbsStepped took 61 ms (did NOT wait for settling yet))
17-03-18 04:42:49.494 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:42:49.494 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:42:49.494 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:49.494 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:42:49.494 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:42:49.494 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:49.494 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:42:49.494 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:42:49.494 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:42:49.504 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:42:49.534 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:49.534 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:42:49.724 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:42:49.724 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:42:49.784 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:49.784 -07 000000581 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:42:49.794 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:42:49.794 -07 000000424 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:49.794 -07 000000424 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:42:49.794 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.147 mm/sec
17-03-18 04:42:50.744 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:50.744 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:42:50.754 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:50.754 -07 000000424 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:50.774 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:50.774 -07 000000424 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:42:50.774 -07 000000424 INF: Y Motor: Moved to 74.8306 after 1482 ms (table move)
17-03-18 04:42:50.774 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171499 mm (DAC = 37464)
17-03-18 04:42:50.774 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:50.774 -07 000000382 INF: FPGA: Recv ZSGSRD 35989
17-03-18 04:42:50.784 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:50.784 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:50.784 -07 000000618 INF: FPGA: Recv ZSGSRD 35988
17-03-18 04:42:50.794 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:50.794 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:50.794 -07 000000424 INF: FPGA: Recv ZSGSRD 35986
17-03-18 04:42:50.804 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:50.804 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:50.804 -07 000000382 INF: FPGA: Recv ZSGSRD 35993
17-03-18 04:42:50.814 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:50.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:50.814 -07 000000590 INF: FPGA: Recv ZSGSRD 35986
17-03-18 04:42:50.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:50.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:51.714 -07 000000447 INF: FPGA: Recv ZSGSRD 35984
17-03-18 04:42:51.714 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:51.714 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 880 ms to get response, and 890 ms overall
17-03-18 04:42:51.714 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:51.714 -07 000000626 INF: FPGA: Recv ZSGSRD 35989
17-03-18 04:42:51.724 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:51.724 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:51.724 -07 000000447 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:42:51.734 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:51.734 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:51.734 -07 000000382 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:42:51.744 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:51.744 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:51.744 -07 000000618 INF: FPGA: Recv ZSGSRD 35983
17-03-18 04:42:51.754 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:51.754 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:51.754 -07 000000382 INF: FPGA: Recv ZPIEZORD 31946
17-03-18 04:42:51.764 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:51.764 -07 000000608 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.9 V.
17-03-18 04:42:51.764 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35988 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35988 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 35993 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:42:51.764 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35988, posNoise = 5, negNoise = 5
17-03-18 04:42:51.764 -07 000000608 INF: Z Motor: After move to -0.171499, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:51.764 -07 000000608 INF: Z Motor: Settle wait time = 1485 ms, measure time = 988 ms (allowed 150 ms), total time = 2473 ms
17-03-18 04:42:51.764 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 988 ms, longer than max expected time of 150 ms
17-03-18 04:42:51.764 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2477 ms
17-03-18 04:42:51.764 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:51.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:51.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:51.764 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:51.764 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:51.764 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:51.764 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:51.764 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:51.764 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:51.774 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:42:51.774 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:51.784 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:42:51.784 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:42:51.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:51.824 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:52.124 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:42:52.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:42:52.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:42:52.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:42:52.164 -07 000000608 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:42:52.174 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:42:52.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 04:42:52.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 04:42:52.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:52.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:42:52.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 04:42:52.274 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:52.274 -07 000000608 INF: Autofocus start
17-03-18 04:42:52.274 -07 000000608 INF: MeasureProfile start
17-03-18 04:42:52.274 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:52.284 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:52.284 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:42:52.294 -07 000000608 INF: MeasureProfile done
17-03-18 04:42:52.294 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:42:52.294 -07 000000608 INF: Autofocus finished
17-03-18 04:42:52.484 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:42:52.484 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:52.484 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171517898568828. ----------
17-03-18 04:42:52.484 -07 000000610 INF: Cycle	128	Tile	19	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:42:52.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35978, sync = True, waitForSettling = True)
17-03-18 04:42:52.494 -07 000000610 INF: Z Motor: Moving to -0.164697 mm, started at -0.171518 mm, distance = 6.82 um
17-03-18 04:42:52.494 -07 000000610 INF: FPGA: Xmit ZDACW 35978\n [Z Motor]
17-03-18 04:42:52.494 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:42:52.504 -07 000000610 INF: FPGA: 'ZDACW 35978' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:52.504 -07 000000626 INF: FPGA: Recv ZDACR 35978
17-03-18 04:42:52.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:42:52.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.664 -07 000000590 INF: FPGA: Recv ZSGSRD 34927
17-03-18 04:42:52.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:52.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.674 -07 000000447 INF: FPGA: Recv ZSGSRD 34929
17-03-18 04:42:52.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.684 -07 000000590 INF: FPGA: Recv ZSGSRD 34926
17-03-18 04:42:52.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:52.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.694 -07 000000626 INF: FPGA: Recv ZSGSRD 34924
17-03-18 04:42:52.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.704 -07 000000590 INF: FPGA: Recv ZSGSRD 34926
17-03-18 04:42:52.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.714 -07 000000608 INF: FPGA: Recv ZSGSRD 34933
17-03-18 04:42:52.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.724 -07 000000626 INF: FPGA: Recv ZSGSRD 34921
17-03-18 04:42:52.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.734 -07 000000608 INF: FPGA: Recv ZSGSRD 34929
17-03-18 04:42:52.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.744 -07 000000590 INF: FPGA: Recv ZSGSRD 34927
17-03-18 04:42:52.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:52.754 -07 000000618 INF: FPGA: Recv ZSGSRD 34932
17-03-18 04:42:52.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:52.764 -07 000000424 INF: FPGA: Recv ZPIEZORD 30532
17-03-18 04:42:52.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:52.774 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.490 V. Piezo Error = -9.7 V.
17-03-18 04:42:52.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34927 (-163.8 uncal um), Error = 0.9 uncal um, Median = 34927 (-163.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34921 (-163.8 uncal um), Max = 34933 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:42:52.774 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34927, posNoise = 6, negNoise = 6
17-03-18 04:42:52.774 -07 000000610 INF: Z Motor: After move to -0.164697, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:52.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:42:52.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:52.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:52.774 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:42:52.774 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:52.774 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:52.774 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:52.774 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:42:52.774 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:42:52.774 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:52.774 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:42:52.774 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:42:52.774 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:42:52.784 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:42:52.784 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:42:52.784 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:42:52.784 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:42:52.794 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:42:52.794 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:42:52.794 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 04:42:52.794 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:42:52.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36155 150\n [Camera]
17-03-18 04:42:53.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:42:53.424 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:42:53.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:42:53.424 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:53.424 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:53.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:42:53.424 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:42:53.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:42:53.424 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:53.434 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:53.434 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:42:53.614 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36155 810
17-03-18 04:42:53.774 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:42:53.824 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:42:53.824 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:42:53.824 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:53.834 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:42:53.834 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:42:53.834 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:53.834 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:53.834 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:42:53.834 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:53.844 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:42:53.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:42:53.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:42:53.974 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:42:53.974 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:42:53.974 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:42:53.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:42:53.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:42:53.974 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:42:53.974 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:42:53.974 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:42:54.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:42:54.164 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:42:54.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36155 150' command took 2 ms to send, 1355 ms to get response, and 1364 ms overall
17-03-18 04:42:54.374 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:42:54.374 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:42:54.374 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:54.374 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:42:54.374 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:42:54.374 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:42:54.384 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:42:54.384 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:42:54.384 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:42:54.384 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:42:54.384 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:42:54.424 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:42:54.424 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:42:54.464 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:42:54.464 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:42:54.464 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:42:54.474 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-18 04:42:54.474 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:42:54.474 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:42:54.624 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.019446,
17-03-18 04:42:54.974 -07 000000455 INF: FPGA: Recv EMIN
17-03-18 04:42:54.974 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 04:42:54.974 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:42:54.974 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-18 04:42:54.984 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:42:54.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:42:54.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.16470180948642. ------
17-03-18 04:42:54.984 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:42:54.984 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13922 mm
17-03-18 04:42:54.984 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:42:54.984 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:42:54.994 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:42:54.994 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:42:54.994 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:42:54.994 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 04:42:54.994 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30413, sync = True, waitForSettling = False)
17-03-18 04:42:54.994 -07 000000447 INF: Z Motor: Moving to -0.139222 mm, started at -0.164702 mm, distance = 25.48 um
17-03-18 04:42:55.004 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:55.004 -07 000000618 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:42:55.014 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:55.014 -07 000000455 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:55.014 -07 000000447 INF: FPGA: Xmit ZDACW 30413\n [Z Motor]
17-03-18 04:42:55.014 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:42:55.014 -07 000000455 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:42:55.024 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:42:55.024 -07 000000447 INF: FPGA: 'ZDACW 30413' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:42:55.024 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:42:55.034 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:42:55.034 -07 000000591 INF: FPGA: Recv ZDACR 30413
17-03-18 04:42:55.044 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:42:55.044 -07 000000447 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:42:55.194 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:42:55.194 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:42:56.644 -07 000000424 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 04:42:56.644 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1629 ms overall
17-03-18 04:42:56.644 -07 000000455 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 04:42:56.644 -07 000000455 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:42:56.644 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1629 ms, distance = 14.918 mm, average velocity = 9.158 mm/sec
17-03-18 04:42:56.694 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:42:56.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:42:59.504 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:42:59.504 -07 000000591 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:42:59.514 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:42:59.514 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:42:59.554 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:42:59.554 -07 000000455 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:42:59.554 -07 000000455 INF: Y Motor: Moved to 59.9102 after 4560 ms
17-03-18 04:42:59.554 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139222 mm (DAC = 30413)
17-03-18 04:42:59.554 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.554 -07 000000424 INF: FPGA: Recv ZSGSRD 30966
17-03-18 04:42:59.564 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:42:59.564 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.564 -07 000000447 INF: FPGA: Recv ZSGSRD 30955
17-03-18 04:42:59.574 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.574 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.574 -07 000000606 INF: FPGA: Recv ZSGSRD 30963
17-03-18 04:42:59.584 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.584 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.584 -07 000000626 INF: FPGA: Recv ZSGSRD 30960
17-03-18 04:42:59.594 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.594 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.594 -07 000000591 INF: FPGA: Recv ZSGSRD 30961
17-03-18 04:42:59.604 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.604 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.604 -07 000000606 INF: FPGA: Recv ZSGSRD 30958
17-03-18 04:42:59.614 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.614 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.614 -07 000000424 INF: FPGA: Recv ZSGSRD 30963
17-03-18 04:42:59.624 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:42:59.624 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.624 -07 000000618 INF: FPGA: Recv ZSGSRD 30963
17-03-18 04:42:59.634 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.634 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.634 -07 000000626 INF: FPGA: Recv ZSGSRD 30962
17-03-18 04:42:59.644 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.644 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:42:59.644 -07 000000455 INF: FPGA: Recv ZSGSRD 30965
17-03-18 04:42:59.654 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.654 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:42:59.654 -07 000000447 INF: FPGA: Recv ZPIEZORD 26368
17-03-18 04:42:59.664 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:42:59.664 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -10.1 V.
17-03-18 04:42:59.664 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30962 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30962 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30955 (-138.4 uncal um), Max = 30966 (-138.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:42:59.664 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30962, posNoise = 4, negNoise = 7
17-03-18 04:42:59.664 -07 000000382 INF: Z Motor: After move to -0.139222, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:42:59.664 -07 000000382 INF: Z Motor: Settle wait time = 4562 ms, measure time = 107 ms (allowed 150 ms), total time = 4669 ms
17-03-18 04:42:59.664 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:42:59.714 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 04:42:59.714 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:42:59.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:42:59.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:42:59.714 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:42:59.714 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:42:59.714 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:42:59.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:42:59.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:42:59.714 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:42:59.744 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:42:59.744 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:42:59.744 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:42:59.744 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:42:59.754 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:42:59.754 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 04:42:59.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:42:59.804 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:42:59.984 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.0344,
17-03-18 04:43:00.104 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:00.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:00.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:00.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:43:00.144 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:00.144 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:00.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:43:00.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:43:00.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:00.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:00.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:43:00.244 -07 000000382 INF: Image SNR check: start
17-03-18 04:43:00.244 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:00.244 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:00.254 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:00.254 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:00.264 -07 000000382 INF: Image SNR check: pass  [peak (Max-Min)=117.25]
17-03-18 04:43:00.264 -07 000000382 INF: Autofocus start
17-03-18 04:43:00.264 -07 000000382 INF: MeasureProfile start
17-03-18 04:43:00.274 -07 000000382 INF: MeasureProfile done
17-03-18 04:43:00.274 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:43:00.274 -07 000000382 INF: Autofocus finished
17-03-18 04:43:00.454 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:00.454 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:00.454 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139229808344338. ----------
17-03-18 04:43:00.454 -07 000000610 INF: Cycle	128	Tile	1	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:00.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28908, sync = True, waitForSettling = True)
17-03-18 04:43:00.464 -07 000000610 INF: Z Motor: Moving to -0.132332 mm, started at -0.139230 mm, distance = 6.90 um
17-03-18 04:43:00.464 -07 000000610 INF: FPGA: Xmit ZDACW 28908\n [Z Motor]
17-03-18 04:43:00.464 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:43:00.474 -07 000000610 INF: FPGA: 'ZDACW 28908' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:43:00.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:00.474 -07 000000424 INF: FPGA: Recv ZDACR 28908
17-03-18 04:43:00.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:00.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.634 -07 000000626 INF: FPGA: Recv ZSGSRD 29894
17-03-18 04:43:00.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.644 -07 000000455 INF: FPGA: Recv ZSGSRD 29886
17-03-18 04:43:00.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.654 -07 000000382 INF: FPGA: Recv ZSGSRD 29886
17-03-18 04:43:00.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.664 -07 000000455 INF: FPGA: Recv ZSGSRD 29889
17-03-18 04:43:00.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.674 -07 000000455 INF: FPGA: Recv ZSGSRD 29889
17-03-18 04:43:00.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.684 -07 000000606 INF: FPGA: Recv ZSGSRD 29889
17-03-18 04:43:00.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29888
17-03-18 04:43:00.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.704 -07 000000626 INF: FPGA: Recv ZSGSRD 29894
17-03-18 04:43:00.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.714 -07 000000424 INF: FPGA: Recv ZSGSRD 29888
17-03-18 04:43:00.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:00.724 -07 000000382 INF: FPGA: Recv ZSGSRD 29885
17-03-18 04:43:00.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:00.734 -07 000000382 INF: FPGA: Recv ZPIEZORD 25231
17-03-18 04:43:00.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:00.744 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -10.2 V.
17-03-18 04:43:00.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29889 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29888 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29885 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:43:00.744 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29889, posNoise = 5, negNoise = 4
17-03-18 04:43:00.744 -07 000000610 INF: Z Motor: After move to -0.132332, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:00.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:43:00.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:00.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:00.744 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:00.744 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:00.744 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:00.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:00.744 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:00.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:00.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:00.744 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:00.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:00.744 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:43:00.754 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:00.754 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:00.764 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:43:00.764 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:43:00.764 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:43:00.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:00.774 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:43:00.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:00.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:43:00.784 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 04:43:00.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29084 150\n [Camera]
17-03-18 04:43:00.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:01.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:01.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:01.404 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:01.414 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:01.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:01.414 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:01.414 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:01.414 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:01.414 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:01.414 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:01.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29084 810
17-03-18 04:43:01.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:01.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:01.784 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:43:01.784 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 04:43:01.784 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:01.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:43:01.794 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:43:01.794 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:01.794 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:01.794 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:43:01.794 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:01.804 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:43:01.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:01.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:01.954 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:01.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:01.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:01.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:01.964 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:01.964 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:43:01.964 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:01.964 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:43:02.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:02.144 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:02.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29084 150' command took 2 ms to send, 1357 ms to get response, and 1364 ms overall
17-03-18 04:43:02.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:02.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132336628716228. ------
17-03-18 04:43:02.154 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13879 mm
17-03-18 04:43:02.154 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:02.154 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:02.274 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:02.274 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 04:43:02.274 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:02.274 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30318, sync = True, waitForSettling = False)
17-03-18 04:43:02.274 -07 000000455 INF: Z Motor: Moving to -0.138787 mm, started at -0.132337 mm, distance = -6.45 um
17-03-18 04:43:02.274 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:43:02.274 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:43:02.284 -07 000000455 INF: FPGA: Xmit ZDACW 30318\n [Z Motor]
17-03-18 04:43:02.284 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:43:02.294 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:02.294 -07 000000455 INF: FPGA: 'ZDACW 30318' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:43:02.294 -07 000000480 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:43:02.304 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:43:02.304 -07 000000382 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:02.304 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:02.304 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:02.304 -07 000000382 INF: Y Motor: Moving 1332 steps1
17-03-18 04:43:02.304 -07 000000501 INF: FPGA: Recv ZDACR 30318
17-03-18 04:43:02.314 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:43:02.314 -07 000000455 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:43:02.314 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:02.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:43:02.344 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:43:02.344 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:02.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:43:02.354 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:43:02.354 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:02.354 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:02.354 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:43:02.354 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:43:02.364 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:43:02.474 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:02.474 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:43:02.684 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:43:02.684 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:43:02.724 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:02.734 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:43:02.734 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:43:02.734 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:02.734 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:43:02.734 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.832 mm, average velocity = 2.151 mm/sec
17-03-18 04:43:03.684 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:03.684 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:43:03.694 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.694 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:03.724 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:03.724 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:03.724 -07 000000382 INF: Y Motor: Moved to 60.7324 after 1449 ms (table move)
17-03-18 04:43:03.724 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138787 mm (DAC = 30318)
17-03-18 04:43:03.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.724 -07 000000461 INF: FPGA: Recv ZSGSRD 30900
17-03-18 04:43:03.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:03.734 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.734 -07 000000455 INF: FPGA: Recv ZSGSRD 30903
17-03-18 04:43:03.744 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.744 -07 000000455 INF: FPGA: Recv ZSGSRD 30892
17-03-18 04:43:03.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.754 -07 000000455 INF: FPGA: Recv ZSGSRD 30890
17-03-18 04:43:03.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.764 -07 000000512 INF: FPGA: Recv ZSGSRD 30892
17-03-18 04:43:03.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.774 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.774 -07 000000455 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:43:03.784 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.784 -07 000000569 INF: FPGA: Recv ZSGSRD 30885
17-03-18 04:43:03.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.794 -07 000000461 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:43:03.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.804 -07 000000625 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:43:03.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:03.814 -07 000000625 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:43:03.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.824 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:03.824 -07 000000625 INF: FPGA: Recv ZPIEZORD 26611
17-03-18 04:43:03.834 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:03.834 -07 000000626 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -9.4 V.
17-03-18 04:43:03.834 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30896 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30898 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30885 (-137.9 uncal um), Max = 30903 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:43:03.834 -07 000000626 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30896, posNoise = 7, negNoise = 11
17-03-18 04:43:03.834 -07 000000626 INF: Z Motor: After move to -0.138787, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:03.834 -07 000000626 INF: Z Motor: Settle wait time = 1452 ms, measure time = 104 ms (allowed 150 ms), total time = 1556 ms
17-03-18 04:43:03.834 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:03.884 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 04:43:03.884 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:03.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:03.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:03.884 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:03.884 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:03.884 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:03.884 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:03.884 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:03.884 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:03.894 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:03.894 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:03.904 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:43:03.904 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:43:03.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:03.954 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:04.254 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:04.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:04.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:04.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:43:04.294 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:04.294 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:04.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 04:43:04.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:43:04.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:04.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:04.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:43:04.394 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:04.394 -07 000000581 INF: Autofocus start
17-03-18 04:43:04.394 -07 000000581 INF: MeasureProfile start
17-03-18 04:43:04.394 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:04.404 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:04.404 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:04.404 -07 000000581 INF: MeasureProfile done
17-03-18 04:43:04.404 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:43:04.404 -07 000000581 INF: Autofocus finished
17-03-18 04:43:05.324 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:05.324 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 910 ms to get response, and 920 ms overall
17-03-18 04:43:05.324 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138805810342982. ----------
17-03-18 04:43:05.324 -07 000000610 INF: Cycle	128	Tile	2	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:05.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28825, sync = True, waitForSettling = True)
17-03-18 04:43:05.324 -07 000000610 INF: Z Motor: Moving to -0.131952 mm, started at -0.138806 mm, distance = 6.85 um
17-03-18 04:43:05.324 -07 000000610 INF: FPGA: Xmit ZDACW 28825\n [Z Motor]
17-03-18 04:43:05.334 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:43:05.334 -07 000000610 INF: FPGA: 'ZDACW 28825' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:43:05.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:05.334 -07 000000455 INF: FPGA: Recv ZDACR 28825
17-03-18 04:43:05.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:05.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29835
17-03-18 04:43:05.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:05.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.504 -07 000000474 INF: FPGA: Recv ZSGSRD 29830
17-03-18 04:43:05.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.514 -07 000000474 INF: FPGA: Recv ZSGSRD 29832
17-03-18 04:43:05.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.524 -07 000000474 INF: FPGA: Recv ZSGSRD 29825
17-03-18 04:43:05.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.544 -07 000000474 INF: FPGA: Recv ZSGSRD 29834
17-03-18 04:43:05.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:43:05.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.554 -07 000000474 INF: FPGA: Recv ZSGSRD 29832
17-03-18 04:43:05.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.564 -07 000000474 INF: FPGA: Recv ZSGSRD 29835
17-03-18 04:43:05.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.574 -07 000000455 INF: FPGA: Recv ZSGSRD 29832
17-03-18 04:43:05.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.584 -07 000000455 INF: FPGA: Recv ZSGSRD 29828
17-03-18 04:43:05.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:05.594 -07 000000455 INF: FPGA: Recv ZSGSRD 29826
17-03-18 04:43:05.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:05.604 -07 000000455 INF: FPGA: Recv ZPIEZORD 25210
17-03-18 04:43:05.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:05.614 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -10.1 V.
17-03-18 04:43:05.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29832 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29825 (-131.1 uncal um), Max = 29835 (-131.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:05.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 4, negNoise = 6
17-03-18 04:43:05.614 -07 000000610 INF: Z Motor: After move to -0.131952, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:05.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 04:43:05.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:05.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:05.614 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:05.614 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:05.614 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:05.614 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:05.614 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:05.614 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:05.614 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:05.614 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:05.614 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:05.614 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:05.624 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:43:05.624 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:05.624 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 04:43:05.624 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:05.634 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.02213,
17-03-18 04:43:05.634 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:43:05.634 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:43:05.634 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:43:05.634 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:43:05.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29002 150\n [Camera]
17-03-18 04:43:05.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:06.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:06.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:06.284 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:06.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:06.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:06.284 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:06.294 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:06.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:06.294 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:06.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:06.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29002 810
17-03-18 04:43:06.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:06.664 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:43:06.664 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:43:06.664 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:06.674 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:06.674 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:43:06.674 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:43:06.674 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:43:06.674 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:06.684 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:06.684 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:43:06.694 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:06.834 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:06.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:06.834 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:06.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:06.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 04:43:06.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:06.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:06.834 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:06.834 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:06.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:43:07.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:07.024 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:07.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29002 150' command took 2 ms to send, 1354 ms to get response, and 1384 ms overall
17-03-18 04:43:07.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:07.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.131964024412006. ------
17-03-18 04:43:07.024 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:07.024 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13873 mm
17-03-18 04:43:07.024 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:07.034 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:43:07.034 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:43:07.034 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:07.034 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30306, sync = True, waitForSettling = False)
17-03-18 04:43:07.034 -07 000000474 INF: Z Motor: Moving to -0.138732 mm, started at -0.131964 mm, distance = -6.77 um
17-03-18 04:43:07.034 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:07.034 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:43:07.034 -07 000000382 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:43:07.044 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:07.044 -07 000000455 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:07.044 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:07.044 -07 000000455 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:43:07.044 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:07.054 -07 000000474 INF: FPGA: Xmit ZDACW 30306\n [Z Motor]
17-03-18 04:43:07.054 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:43:07.064 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:07.064 -07 000000474 INF: FPGA: 'ZDACW 30306' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:43:07.074 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:07.074 -07 000000480 INF: FPGA: Recv ZDACR 30306
17-03-18 04:43:07.084 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:43:07.084 -07 000000474 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:43:07.234 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:43:07.234 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:43:07.234 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:07.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:43:07.234 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:43:07.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:07.244 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:07.244 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 04:43:07.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:07.244 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:43:07.244 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:43:07.254 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:43:07.434 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:43:07.434 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:43:07.484 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:07.494 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:43:07.494 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:43:07.494 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:07.494 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:43:07.494 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 04:43:08.444 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:08.444 -07 000000474 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:43:08.454 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:08.454 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:08.484 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:08.484 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:08.484 -07 000000455 INF: Y Motor: Moved to 61.5630 after 1451 ms (table move)
17-03-18 04:43:08.484 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138732 mm (DAC = 30306)
17-03-18 04:43:08.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.484 -07 000000461 INF: FPGA: Recv ZSGSRD 30885
17-03-18 04:43:08.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:43:08.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.494 -07 000000461 INF: FPGA: Recv ZSGSRD 30888
17-03-18 04:43:08.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.504 -07 000000461 INF: FPGA: Recv ZSGSRD 30887
17-03-18 04:43:08.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.514 -07 000000461 INF: FPGA: Recv ZSGSRD 30884
17-03-18 04:43:08.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.524 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.524 -07 000000447 INF: FPGA: Recv ZSGSRD 30881
17-03-18 04:43:08.534 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.534 -07 000000581 INF: FPGA: Recv ZSGSRD 30886
17-03-18 04:43:08.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.544 -07 000000581 INF: FPGA: Recv ZSGSRD 30881
17-03-18 04:43:08.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.554 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.554 -07 000000455 INF: FPGA: Recv ZSGSRD 30882
17-03-18 04:43:08.564 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:08.564 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.564 -07 000000455 INF: FPGA: Recv ZSGSRD 30885
17-03-18 04:43:08.574 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.574 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:08.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30885
17-03-18 04:43:08.584 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.584 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:08.584 -07 000000455 INF: FPGA: Recv ZPIEZORD 26681
17-03-18 04:43:08.594 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:08.594 -07 000000626 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -9.2 V.
17-03-18 04:43:08.594 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30884 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30885 (-137.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30881 (-137.9 uncal um), Max = 30888 (-138.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:43:08.594 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30884, posNoise = 4, negNoise = 3
17-03-18 04:43:08.594 -07 000000626 INF: Z Motor: After move to -0.138732, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:08.594 -07 000000626 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:43:08.594 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:08.644 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:43:08.644 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:08.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:08.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:08.644 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:08.644 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:08.644 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:08.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:08.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:08.644 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:08.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:08.654 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:08.654 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:43:08.654 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:43:08.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:08.704 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:09.004 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:09.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:09.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:09.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:43:09.044 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:09.044 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:09.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:43:09.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:43:09.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:09.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:09.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:43:09.144 -07 000000382 INF: Autofocus start
17-03-18 04:43:09.144 -07 000000382 INF: MeasureProfile start
17-03-18 04:43:09.144 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:09.144 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:09.154 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:09.154 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:09.154 -07 000000382 INF: MeasureProfile done
17-03-18 04:43:09.154 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:43:09.154 -07 000000382 INF: Autofocus finished
17-03-18 04:43:09.354 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:09.354 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:09.354 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.13872871979728. ----------
17-03-18 04:43:09.354 -07 000000610 INF: Cycle	128	Tile	3	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:09.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28813, sync = True, waitForSettling = True)
17-03-18 04:43:09.364 -07 000000610 INF: Z Motor: Moving to -0.131897 mm, started at -0.138729 mm, distance = 6.83 um
17-03-18 04:43:09.364 -07 000000610 INF: FPGA: Xmit ZDACW 28813\n [Z Motor]
17-03-18 04:43:09.364 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:43:09.374 -07 000000610 INF: FPGA: 'ZDACW 28813' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:09.374 -07 000000480 INF: FPGA: Recv ZDACR 28813
17-03-18 04:43:09.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:09.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:09.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29822
17-03-18 04:43:09.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:09.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.544 -07 000000480 INF: FPGA: Recv ZSGSRD 29819
17-03-18 04:43:09.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.554 -07 000000569 INF: FPGA: Recv ZSGSRD 29827
17-03-18 04:43:09.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.564 -07 000000474 INF: FPGA: Recv ZSGSRD 29819
17-03-18 04:43:09.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.574 -07 000000606 INF: FPGA: Recv ZSGSRD 29815
17-03-18 04:43:09.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.584 -07 000000480 INF: FPGA: Recv ZSGSRD 29826
17-03-18 04:43:09.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.594 -07 000000569 INF: FPGA: Recv ZSGSRD 29822
17-03-18 04:43:09.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.604 -07 000000474 INF: FPGA: Recv ZSGSRD 29821
17-03-18 04:43:09.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.614 -07 000000606 INF: FPGA: Recv ZSGSRD 29820
17-03-18 04:43:09.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:09.624 -07 000000480 INF: FPGA: Recv ZSGSRD 29822
17-03-18 04:43:09.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:09.634 -07 000000569 INF: FPGA: Recv ZPIEZORD 25266
17-03-18 04:43:09.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:09.644 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -10.0 V.
17-03-18 04:43:09.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29821 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29815 (-131.1 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:09.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29821, posNoise = 6, negNoise = 6
17-03-18 04:43:09.644 -07 000000610 INF: Z Motor: After move to -0.131897, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:09.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:43:09.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:09.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:09.644 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:09.644 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:09.644 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:09.644 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:09.644 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:09.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:09.644 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:09.644 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:09.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:09.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:09.644 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:09.644 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:09.654 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:43:09.654 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:09.654 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:43:09.654 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:43:09.664 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:43:09.664 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:43:09.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28990 150\n [Camera]
17-03-18 04:43:09.864 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:10.284 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:10.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:10.284 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:10.284 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:10.284 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:43:10.294 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:10.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:10.294 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:10.294 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:10.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:43:10.484 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28990 810
17-03-18 04:43:10.634 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:10.694 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:43:10.694 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:43:10.694 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:10.694 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:43:10.694 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:43:10.694 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:10.694 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:10.694 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:43:10.694 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:10.704 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:43:10.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:10.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:10.834 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:10.834 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:10.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:43:10.834 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:10.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:10.834 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:10.834 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:10.834 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:43:11.004 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.952638,
17-03-18 04:43:11.024 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:11.024 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:11.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28990 150' command took 2 ms to send, 1358 ms to get response, and 1364 ms overall
17-03-18 04:43:11.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:11.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.131899782290589. ------
17-03-18 04:43:11.034 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13820 mm
17-03-18 04:43:11.034 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:11.034 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:43:11.034 -07 000000606 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 04:43:11.034 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30190, sync = True, waitForSettling = False)
17-03-18 04:43:11.034 -07 000000626 INF: Z Motor: Moving to -0.138201 mm, started at -0.131900 mm, distance = -6.30 um
17-03-18 04:43:11.044 -07 000000626 INF: FPGA: Xmit ZDACW 30190\n [Z Motor]
17-03-18 04:43:11.054 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:11.064 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:11.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:43:11.234 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:43:11.344 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:11.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 510 ms.
17-03-18 04:43:11.344 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 04:43:11.344 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:11.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:11.354 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:43:11.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 04:43:11.354 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 04:43:11.364 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:43:11.364 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:11.364 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:43:11.364 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 298 ms to get response, and 332 ms overall
17-03-18 04:43:11.364 -07 000000606 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:11.364 -07 000000606 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:11.364 -07 000000606 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:43:11.364 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 308 ms to get response, and 335 ms overall
17-03-18 04:43:11.364 -07 000000626 INF: FPGA: 'ZDACW 30190' command took 0 ms to send, 318 ms to get response, and 331 ms overall
17-03-18 04:43:11.374 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:11.384 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:11.384 -07 000000461 INF: FPGA: Recv ZDACR 30190
17-03-18 04:43:11.394 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:11.394 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:43:11.394 -07 000000626 INF: Z Motor: MoveAbsStepped took 353 ms (did NOT wait for settling yet))
17-03-18 04:43:11.574 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:11.574 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:43:11.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:11.764 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:43:11.764 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:43:11.814 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:11.824 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:43:11.824 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:11.824 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:11.824 -07 000000606 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:43:11.824 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:43:12.774 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:12.774 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:43:12.784 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:12.784 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:12.804 -07 000000606 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:12.804 -07 000000606 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:12.804 -07 000000606 INF: Y Motor: Moved to 62.3950 after 1773 ms (table move)
17-03-18 04:43:12.814 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138201 mm (DAC = 30190)
17-03-18 04:43:12.814 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.814 -07 000000626 INF: FPGA: Recv ZSGSRD 30806
17-03-18 04:43:12.824 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:43:12.824 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.824 -07 000000590 INF: FPGA: Recv ZSGSRD 30815
17-03-18 04:43:12.834 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.834 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.834 -07 000000606 INF: FPGA: Recv ZSGSRD 30805
17-03-18 04:43:12.844 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.844 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30791
17-03-18 04:43:12.854 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.854 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.854 -07 000000581 INF: FPGA: Recv ZSGSRD 30801
17-03-18 04:43:12.864 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.864 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.864 -07 000000461 INF: FPGA: Recv ZSGSRD 30802
17-03-18 04:43:12.874 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.874 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.874 -07 000000581 INF: FPGA: Recv ZSGSRD 30802
17-03-18 04:43:12.884 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.884 -07 000000461 INF: FPGA: Recv ZSGSRD 30808
17-03-18 04:43:12.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.894 -07 000000581 INF: FPGA: Recv ZSGSRD 30808
17-03-18 04:43:12.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:12.904 -07 000000591 INF: FPGA: Recv ZSGSRD 30808
17-03-18 04:43:12.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.914 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:12.914 -07 000000626 INF: FPGA: Recv ZPIEZORD 26565
17-03-18 04:43:12.924 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:12.924 -07 000000474 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -9.3 V.
17-03-18 04:43:12.924 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30805 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30806 (-137.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30791 (-137.3 uncal um), Max = 30815 (-137.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 04:43:12.924 -07 000000474 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30805, posNoise = 10, negNoise = 14
17-03-18 04:43:12.924 -07 000000474 INF: Z Motor: After move to -0.138201, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:12.924 -07 000000474 INF: Z Motor: Settle wait time = 1776 ms, measure time = 108 ms (allowed 150 ms), total time = 1884 ms
17-03-18 04:43:12.924 -07 000000474 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:12.974 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1936 ms
17-03-18 04:43:12.974 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:12.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:12.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:12.974 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:12.974 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:12.974 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:12.974 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:12.974 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:12.974 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:12.984 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:12.984 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:12.994 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:43:12.994 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:43:12.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:13.044 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:13.344 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:13.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:13.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:13.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:43:13.384 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:13.384 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:13.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:43:13.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:43:13.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:13.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:13.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:43:13.484 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:13.484 -07 000000474 INF: Autofocus start
17-03-18 04:43:13.484 -07 000000474 INF: MeasureProfile start
17-03-18 04:43:13.484 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:13.494 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:43:13.494 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:13.494 -07 000000474 INF: MeasureProfile done
17-03-18 04:43:13.494 -07 000000474 INF: X=48  Z correction [um]=0.2069503
17-03-18 04:43:13.494 -07 000000474 INF: Autofocus finished
17-03-18 04:43:13.694 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:13.694 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:13.694 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138221207038081. ----------
17-03-18 04:43:13.704 -07 000000610 INF: Cycle	128	Tile	4	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:13.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28748, sync = True, waitForSettling = True)
17-03-18 04:43:13.704 -07 000000610 INF: Z Motor: Moving to -0.131600 mm, started at -0.138221 mm, distance = 6.62 um
17-03-18 04:43:13.704 -07 000000610 INF: FPGA: Xmit ZDACW 28748\n [Z Motor]
17-03-18 04:43:13.704 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:43:13.714 -07 000000610 INF: FPGA: 'ZDACW 28748' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:13.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:13.714 -07 000000581 INF: FPGA: Recv ZDACR 28748
17-03-18 04:43:13.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:13.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.874 -07 000000461 INF: FPGA: Recv ZSGSRD 29770
17-03-18 04:43:13.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.884 -07 000000581 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:43:13.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.894 -07 000000461 INF: FPGA: Recv ZSGSRD 29772
17-03-18 04:43:13.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29775
17-03-18 04:43:13.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.914 -07 000000590 INF: FPGA: Recv ZSGSRD 29779
17-03-18 04:43:13.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.924 -07 000000591 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:43:13.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:43:13.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.944 -07 000000461 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:43:13.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.954 -07 000000581 INF: FPGA: Recv ZSGSRD 29779
17-03-18 04:43:13.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:13.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:43:13.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:13.974 -07 000000606 INF: FPGA: Recv ZPIEZORD 25231
17-03-18 04:43:13.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:13.984 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -10.0 V.
17-03-18 04:43:13.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29770 (-130.8 uncal um), Max = 29779 (-130.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:13.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 3, negNoise = 6
17-03-18 04:43:13.984 -07 000000610 INF: Z Motor: After move to -0.131600, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:13.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:43:13.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:13.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:13.984 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:13.984 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:13.984 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:13.984 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:13.984 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:13.984 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:13.984 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:13.984 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:13.984 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:13.984 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:13.994 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:43:13.994 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:13.994 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:13.994 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:14.004 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:43:14.004 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:43:14.004 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:43:14.004 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:43:14.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28924 150\n [Camera]
17-03-18 04:43:14.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:14.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:14.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:14.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:14.634 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:14.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:14.634 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:14.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:14.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:14.634 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:14.634 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:14.824 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28924 810
17-03-18 04:43:15.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:43:15.004 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:43:15.004 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:15.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:43:15.004 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:43:15.004 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:15.014 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:15.014 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:43:15.014 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:15.024 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:43:15.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:15.174 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:43:15.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:43:15.174 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:15.184 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:43:15.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:43:15.184 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:15.184 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:15.184 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:43:15.184 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:15.184 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:43:15.584 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:43:15.584 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:43:15.584 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:15.584 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:43:15.584 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:43:15.584 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:15.584 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:15.584 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:15.584 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:43:15.594 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:43:15.594 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:43:15.594 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:15.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28924 150' command took 2 ms to send, 1589 ms to get response, and 1595 ms overall
17-03-18 04:43:15.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:15.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131610692744209. ------
17-03-18 04:43:15.604 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:15.604 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13836 mm
17-03-18 04:43:15.604 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:16.314 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:16.314 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 588 ms to get response, and 704 ms overall
17-03-18 04:43:16.314 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:16.314 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:43:16.314 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:43:16.324 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:17.324 -07 000000625 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:43:17.324 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:17.324 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 1008 ms overall
17-03-18 04:43:17.324 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:17.324 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:17.324 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:17.324 -07 000000501 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:43:17.324 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1000 ms to get response, and 1009 ms overall
17-03-18 04:43:17.324 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:17.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:17.324 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30225, sync = True, waitForSettling = False)
17-03-18 04:43:17.324 -07 000000625 INF: Z Motor: Moving to -0.138361 mm, started at -0.131611 mm, distance = -6.75 um
17-03-18 04:43:17.324 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.964938,
17-03-18 04:43:17.344 -07 000000625 INF: FPGA: Xmit ZDACW 30225\n [Z Motor]
17-03-18 04:43:18.324 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:43:18.324 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:43:18.324 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-18 04:43:18.324 -07 000000625 INF: FPGA: 'ZDACW 30225' command took 0 ms to send, 970 ms to get response, and 997 ms overall
17-03-18 04:43:18.344 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:18.354 -07 000000502 INF: FPGA: Recv ZDACR 30225
17-03-18 04:43:18.364 -07 000000625 INF: FPGA: 'ZDACR' command took 10 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 04:43:18.364 -07 000000625 INF: Z Motor: MoveAbsStepped took 1036 ms (did NOT wait for settling yet))
17-03-18 04:43:18.404 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:18.404 -07 000000382 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:43:18.414 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:43:18.414 -07 000000501 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:18.414 -07 000000501 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:43:18.414 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 998 ms, distance = 0.838 mm, average velocity = 0.839 mm/sec
17-03-18 04:43:19.364 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:19.364 -07 000000447 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:43:19.374 -07 000000501 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:19.374 -07 000000501 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:19.404 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:19.404 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:43:19.404 -07 000000501 INF: Y Motor: Moved to 63.2236 after 3088 ms (table move)
17-03-18 04:43:19.404 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138361 mm (DAC = 30225)
17-03-18 04:43:19.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:43:19.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:19.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.414 -07 000000382 INF: FPGA: Recv ZSGSRD 30824
17-03-18 04:43:19.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.424 -07 000000625 INF: FPGA: Recv ZSGSRD 30821
17-03-18 04:43:19.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.434 -07 000000480 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:43:19.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.444 -07 000000625 INF: FPGA: Recv ZSGSRD 30834
17-03-18 04:43:19.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.454 -07 000000382 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:43:19.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.464 -07 000000502 INF: FPGA: Recv ZSGSRD 30826
17-03-18 04:43:19.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.474 -07 000000480 INF: FPGA: Recv ZSGSRD 30825
17-03-18 04:43:19.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30827
17-03-18 04:43:19.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:19.494 -07 000000569 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:43:19.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.504 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:19.504 -07 000000625 INF: FPGA: Recv ZPIEZORD 26600
17-03-18 04:43:19.514 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:19.514 -07 000000626 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.3 V.
17-03-18 04:43:19.514 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30827 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30826 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30821 (-137.5 uncal um), Max = 30834 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:19.514 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30827, posNoise = 7, negNoise = 6
17-03-18 04:43:19.514 -07 000000626 INF: Z Motor: After move to -0.138361, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:19.514 -07 000000626 INF: Z Motor: Settle wait time = 2080 ms, measure time = 107 ms (allowed 150 ms), total time = 2187 ms
17-03-18 04:43:19.514 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:19.564 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3954 ms
17-03-18 04:43:19.564 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:19.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:19.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:19.564 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:19.564 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:19.564 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:19.574 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:19.574 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:43:19.574 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:19.574 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:19.574 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:19.584 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:43:19.584 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:43:19.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:19.624 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:19.924 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:19.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:19.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:19.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:43:19.964 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:19.964 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:19.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 04:43:20.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:43:20.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:20.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:20.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:43:20.164 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:20.164 -07 000000626 INF: Autofocus start
17-03-18 04:43:20.164 -07 000000626 INF: MeasureProfile start
17-03-18 04:43:20.164 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:20.174 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:20.174 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:20.174 -07 000000626 INF: MeasureProfile done
17-03-18 04:43:20.174 -07 000000626 INF: X=-19  Z correction [um]=-0.09589154
17-03-18 04:43:20.174 -07 000000626 INF: Autofocus finished
17-03-18 04:43:20.374 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:20.374 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 04:43:20.384 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.1383625397052. ----------
17-03-18 04:43:20.384 -07 000000610 INF: Cycle	128	Tile	5	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:20.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28716, sync = True, waitForSettling = True)
17-03-18 04:43:20.384 -07 000000610 INF: Z Motor: Moving to -0.131453 mm, started at -0.138363 mm, distance = 6.91 um
17-03-18 04:43:20.384 -07 000000610 INF: FPGA: Xmit ZDACW 28716\n [Z Motor]
17-03-18 04:43:20.384 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:43:20.394 -07 000000610 INF: FPGA: 'ZDACW 28716' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:20.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:20.394 -07 000000501 INF: FPGA: Recv ZDACR 28716
17-03-18 04:43:20.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:20.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.554 -07 000000625 INF: FPGA: Recv ZSGSRD 29754
17-03-18 04:43:20.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:20.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.564 -07 000000480 INF: FPGA: Recv ZSGSRD 29755
17-03-18 04:43:20.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.574 -07 000000382 INF: FPGA: Recv ZSGSRD 29753
17-03-18 04:43:20.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.584 -07 000000501 INF: FPGA: Recv ZSGSRD 29751
17-03-18 04:43:20.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.594 -07 000000382 INF: FPGA: Recv ZSGSRD 29752
17-03-18 04:43:20.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.604 -07 000000502 INF: FPGA: Recv ZSGSRD 29755
17-03-18 04:43:20.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.614 -07 000000569 INF: FPGA: Recv ZSGSRD 29752
17-03-18 04:43:20.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29750
17-03-18 04:43:20.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.634 -07 000000382 INF: FPGA: Recv ZSGSRD 29757
17-03-18 04:43:20.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:20.644 -07 000000625 INF: FPGA: Recv ZSGSRD 29754
17-03-18 04:43:20.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:20.654 -07 000000447 INF: FPGA: Recv ZPIEZORD 25156
17-03-18 04:43:20.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:20.664 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -10.1 V.
17-03-18 04:43:20.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29753 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29750 (-130.7 uncal um), Max = 29757 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:43:20.664 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29753, posNoise = 4, negNoise = 3
17-03-18 04:43:20.664 -07 000000610 INF: Z Motor: After move to -0.131453, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:20.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:43:20.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:20.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:20.664 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:20.664 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:20.664 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:20.664 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:20.664 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:20.664 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:20.664 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:20.664 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:20.664 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:20.664 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:20.674 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:20.674 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:20.674 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:43:20.674 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:20.684 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:43:20.684 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:43:20.684 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:43:20.684 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:43:20.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28893 150\n [Camera]
17-03-18 04:43:20.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:21.314 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:21.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:21.314 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:21.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:21.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:21.694 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:43:21.694 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:43:21.694 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:21.704 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:21.704 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:43:21.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:21.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28893 810
17-03-18 04:43:21.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:21.704 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:21.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:21.714 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:21.714 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:21.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:22.094 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:43:22.094 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:43:22.094 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:22.094 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:22.104 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:43:22.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:22.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:22.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:43:22.114 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:22.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28893 150' command took 2 ms to send, 1410 ms to get response, and 1420 ms overall
17-03-18 04:43:22.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:22.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:22.114 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:22.114 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:22.114 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:43:22.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:22.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.131462935864949. ------
17-03-18 04:43:22.494 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:43:22.494 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:43:22.494 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:22.494 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:22.494 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:43:22.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:22.574 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:22.574 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:43:22.954 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:43:22.954 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:43:22.954 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:22.964 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:43:22.964 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:43:22.974 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:23.564 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13757 mm
17-03-18 04:43:23.564 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:24.094 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:24.094 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1110 ms to get response, and 1111 ms overall
17-03-18 04:43:24.094 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:24.094 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:43:24.094 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:43:24.104 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:24.734 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30053, sync = True, waitForSettling = False)
17-03-18 04:43:24.734 -07 000000512 INF: Z Motor: Moving to -0.137574 mm, started at -0.131463 mm, distance = -6.11 um
17-03-18 04:43:24.734 -07 000000512 INF: FPGA: Xmit ZDACW 30053\n [Z Motor]
17-03-18 04:43:25.154 -07 000000424 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:43:25.154 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:25.154 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1040 ms to get response, and 1058 ms overall
17-03-18 04:43:25.154 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:43:25.154 -07 000000512 INF: FPGA: 'ZDACW 30053' command took 0 ms to send, 411 ms to get response, and 415 ms overall
17-03-18 04:43:25.154 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:25.154 -07 000000618 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:25.154 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:25.154 -07 000000618 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:43:25.154 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.999021,
17-03-18 04:43:25.154 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1051 ms to get response, and 1059 ms overall
17-03-18 04:43:25.154 -07 000000424 INF: FPGA: Recv ZDACR 30053
17-03-18 04:43:25.164 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:25.164 -07 000000512 INF: Z Motor: MoveAbsStepped took 424 ms (did NOT wait for settling yet))
17-03-18 04:43:25.164 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:25.534 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:43:25.534 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:43:25.584 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:25.594 -07 000000591 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:43:25.594 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:43:25.594 -07 000000618 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:25.594 -07 000000618 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:43:25.594 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-18 04:43:26.544 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:26.544 -07 000000480 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:43:26.554 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:26.554 -07 000000618 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:26.574 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:26.574 -07 000000618 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:43:26.574 -07 000000618 INF: Y Motor: Moved to 64.0566 after 2485 ms (table move)
17-03-18 04:43:26.584 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137574 mm (DAC = 30053)
17-03-18 04:43:26.584 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30713
17-03-18 04:43:26.594 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.594 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.594 -07 000000480 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:43:26.604 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.604 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.604 -07 000000424 INF: FPGA: Recv ZSGSRD 30702
17-03-18 04:43:26.614 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.614 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.614 -07 000000480 INF: FPGA: Recv ZSGSRD 30702
17-03-18 04:43:26.624 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.624 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.624 -07 000000618 INF: FPGA: Recv ZSGSRD 30697
17-03-18 04:43:26.634 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.634 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.634 -07 000000467 INF: FPGA: Recv ZSGSRD 30706
17-03-18 04:43:26.644 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.644 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.644 -07 000000618 INF: FPGA: Recv ZSGSRD 30706
17-03-18 04:43:26.654 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.654 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.654 -07 000000467 INF: FPGA: Recv ZSGSRD 30704
17-03-18 04:43:26.664 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.664 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.664 -07 000000591 INF: FPGA: Recv ZSGSRD 30707
17-03-18 04:43:26.674 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.674 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:26.674 -07 000000480 INF: FPGA: Recv ZSGSRD 30711
17-03-18 04:43:26.684 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.684 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:26.684 -07 000000512 INF: FPGA: Recv ZPIEZORD 26426
17-03-18 04:43:26.694 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:26.694 -07 000000455 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.4 V.
17-03-18 04:43:26.694 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30706 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30706 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30697 (-136.7 uncal um), Max = 30713 (-136.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:43:26.694 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30706, posNoise = 7, negNoise = 9
17-03-18 04:43:26.694 -07 000000455 INF: Z Motor: After move to -0.137574, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:26.694 -07 000000455 INF: Z Motor: Settle wait time = 1845 ms, measure time = 110 ms (allowed 150 ms), total time = 1955 ms
17-03-18 04:43:26.694 -07 000000455 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:26.694 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:26.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:26.734 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3168 ms
17-03-18 04:43:26.734 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:26.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:26.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:26.734 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:26.734 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:26.734 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:26.734 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:26.734 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:26.734 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:26.744 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:26.744 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:26.754 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:43:26.754 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:43:26.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:26.804 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:27.104 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:27.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:27.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:27.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) start.
17-03-18 04:43:27.144 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:27.144 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:27.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:43:27.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576082264, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:43:27.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:27.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:27.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:43:27.244 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:27.244 -07 000000480 INF: Autofocus start
17-03-18 04:43:27.244 -07 000000480 INF: MeasureProfile start
17-03-18 04:43:27.244 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:27.254 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:27.254 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:27.254 -07 000000480 INF: MeasureProfile done
17-03-18 04:43:27.254 -07 000000480 INF: X=64  Z correction [um]=0.2839165
17-03-18 04:43:27.254 -07 000000480 INF: Autofocus finished
17-03-18 04:43:27.454 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:27.454 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:27.454 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.137585210036047. ----------
17-03-18 04:43:27.454 -07 000000610 INF: Cycle	128	Tile	6	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:27.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28627, sync = True, waitForSettling = True)
17-03-18 04:43:27.464 -07 000000610 INF: Z Motor: Moving to -0.131046 mm, started at -0.137585 mm, distance = 6.54 um
17-03-18 04:43:27.464 -07 000000610 INF: FPGA: Xmit ZDACW 28627\n [Z Motor]
17-03-18 04:43:27.464 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:43:27.474 -07 000000610 INF: FPGA: 'ZDACW 28627' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:27.474 -07 000000591 INF: FPGA: Recv ZDACR 28627
17-03-18 04:43:27.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:27.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.634 -07 000000512 INF: FPGA: Recv ZSGSRD 29683
17-03-18 04:43:27.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:27.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.644 -07 000000618 INF: FPGA: Recv ZSGSRD 29684
17-03-18 04:43:27.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.654 -07 000000512 INF: FPGA: Recv ZSGSRD 29693
17-03-18 04:43:27.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.664 -07 000000424 INF: FPGA: Recv ZSGSRD 29684
17-03-18 04:43:27.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.674 -07 000000480 INF: FPGA: Recv ZSGSRD 29690
17-03-18 04:43:27.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.684 -07 000000455 INF: FPGA: Recv ZSGSRD 29684
17-03-18 04:43:27.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.694 -07 000000467 INF: FPGA: Recv ZSGSRD 29686
17-03-18 04:43:27.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.704 -07 000000591 INF: FPGA: Recv ZSGSRD 29696
17-03-18 04:43:27.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.714 -07 000000591 INF: FPGA: Recv ZSGSRD 29691
17-03-18 04:43:27.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:27.724 -07 000000591 INF: FPGA: Recv ZSGSRD 29692
17-03-18 04:43:27.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:27.734 -07 000000467 INF: FPGA: Recv ZPIEZORD 25099
17-03-18 04:43:27.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:27.744 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -10.1 V.
17-03-18 04:43:27.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29683 (-130.2 uncal um), Max = 29696 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:43:27.744 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 8, negNoise = 5
17-03-18 04:43:27.744 -07 000000610 INF: Z Motor: After move to -0.131046, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:27.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:43:27.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:27.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:27.744 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:27.744 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:27.744 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:27.744 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:27.744 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:27.744 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:27.744 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:27.744 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:27.744 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:27.744 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:27.744 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:27.744 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:27.754 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:43:27.754 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:27.764 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:43:27.764 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:43:27.764 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:43:27.764 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:43:27.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28804 150\n [Camera]
17-03-18 04:43:27.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:28.384 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:28.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:28.384 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:28.394 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:28.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:28.394 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:28.394 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:28.394 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:28.394 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:28.394 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:28.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28804 810
17-03-18 04:43:28.734 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:43:28.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:43:28.774 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:43:28.774 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:28.784 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:43:28.784 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:43:28.784 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:28.784 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:28.784 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:43:28.784 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:28.794 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:43:28.934 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:28.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:28.934 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:28.934 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:28.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:28.944 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:28.944 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:28.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:43:28.944 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:28.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:43:29.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:43:29.124 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:29.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28804 150' command took 2 ms to send, 1359 ms to get response, and 1366 ms overall
17-03-18 04:43:29.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:29.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131045362075734. ------
17-03-18 04:43:29.134 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:29.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:43:29.314 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:43:29.314 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:29.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:43:29.324 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:43:29.324 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:29.324 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:29.324 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:43:29.324 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:43:29.334 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:43:29.334 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13754 mm
17-03-18 04:43:29.344 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:29.344 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:29.344 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 202 ms to get response, and 205 ms overall
17-03-18 04:43:29.344 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:29.344 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:43:29.344 -07 000000591 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:43:29.354 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:30.324 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30047, sync = True, waitForSettling = False)
17-03-18 04:43:30.324 -07 000000606 INF: Z Motor: Moving to -0.137546 mm, started at -0.131045 mm, distance = -6.50 um
17-03-18 04:43:30.324 -07 000000606 INF: FPGA: Xmit ZDACW 30047\n [Z Motor]
17-03-18 04:43:31.324 -07 000000608 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:43:31.324 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:31.324 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1960 ms to get response, and 1976 ms overall
17-03-18 04:43:31.324 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:43:31.324 -07 000000606 INF: FPGA: 'ZDACW 30047' command took 0 ms to send, 991 ms to get response, and 997 ms overall
17-03-18 04:43:31.324 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:31.324 -07 000000591 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:31.324 -07 000000591 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:31.324 -07 000000591 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:43:31.324 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1970 ms to get response, and 1977 ms overall
17-03-18 04:43:31.324 -07 000000608 INF: FPGA: Recv ZDACR 30047
17-03-18 04:43:31.334 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:31.334 -07 000000606 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-18 04:43:31.334 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:31.694 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:31.704 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:43:31.704 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:43:31.754 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:31.764 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:43:31.764 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:43:31.764 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:31.764 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:43:31.764 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.836 mm, average velocity = 2.166 mm/sec
17-03-18 04:43:31.944 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.004458,
17-03-18 04:43:32.714 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:32.714 -07 000000581 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:43:32.724 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:32.724 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:32.754 -07 000000591 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:32.754 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:32.754 -07 000000591 INF: Y Motor: Moved to 64.8784 after 3407 ms (table move)
17-03-18 04:43:32.754 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137546 mm (DAC = 30047)
17-03-18 04:43:32.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.754 -07 000000608 INF: FPGA: Recv ZSGSRD 30709
17-03-18 04:43:32.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:32.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.764 -07 000000461 INF: FPGA: Recv ZSGSRD 30705
17-03-18 04:43:32.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.774 -07 000000590 INF: FPGA: Recv ZSGSRD 30701
17-03-18 04:43:32.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.784 -07 000000591 INF: FPGA: Recv ZSGSRD 30705
17-03-18 04:43:32.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.794 -07 000000606 INF: FPGA: Recv ZSGSRD 30701
17-03-18 04:43:32.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.804 -07 000000461 INF: FPGA: Recv ZSGSRD 30696
17-03-18 04:43:32.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.814 -07 000000590 INF: FPGA: Recv ZSGSRD 30699
17-03-18 04:43:32.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.824 -07 000000581 INF: FPGA: Recv ZSGSRD 30702
17-03-18 04:43:32.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.834 -07 000000590 INF: FPGA: Recv ZSGSRD 30700
17-03-18 04:43:32.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:32.844 -07 000000581 INF: FPGA: Recv ZSGSRD 30703
17-03-18 04:43:32.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.854 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:32.854 -07 000000461 INF: FPGA: Recv ZPIEZORD 26466
17-03-18 04:43:32.864 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:32.864 -07 000000467 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.3 V.
17-03-18 04:43:32.864 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30702 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30702 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30696 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:32.864 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30702, posNoise = 7, negNoise = 6
17-03-18 04:43:32.864 -07 000000467 INF: Z Motor: After move to -0.137546, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:32.864 -07 000000467 INF: Z Motor: Settle wait time = 2431 ms, measure time = 106 ms (allowed 150 ms), total time = 2537 ms
17-03-18 04:43:32.864 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:32.914 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3570 ms
17-03-18 04:43:32.914 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:32.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:32.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:32.914 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:32.914 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:32.914 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:32.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:32.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:43:32.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:32.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:32.924 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:32.934 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:43:32.934 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:43:32.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:32.984 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:43:33.284 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:33.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:33.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:33.394 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:33.394 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:33.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) start.
17-03-18 04:43:33.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 456 ms to get response, and 460 ms overall
17-03-18 04:43:33.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595163648, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:43:33.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:33.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:33.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 243 ms.
17-03-18 04:43:33.594 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:33.594 -07 000000447 INF: Autofocus start
17-03-18 04:43:33.594 -07 000000447 INF: MeasureProfile start
17-03-18 04:43:33.594 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:33.604 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:33.604 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:33.604 -07 000000447 INF: MeasureProfile done
17-03-18 04:43:33.604 -07 000000447 INF: X=48  Z correction [um]=0.2069503
17-03-18 04:43:33.604 -07 000000447 INF: Autofocus finished
17-03-18 04:43:33.804 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:33.804 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:43:33.804 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.13755951318748. ----------
17-03-18 04:43:33.814 -07 000000610 INF: Cycle	128	Tile	7	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:33.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28604, sync = True, waitForSettling = True)
17-03-18 04:43:33.814 -07 000000610 INF: Z Motor: Moving to -0.130941 mm, started at -0.137560 mm, distance = 6.62 um
17-03-18 04:43:33.814 -07 000000610 INF: FPGA: Xmit ZDACW 28604\n [Z Motor]
17-03-18 04:43:33.814 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:43:33.824 -07 000000610 INF: FPGA: 'ZDACW 28604' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:43:33.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:33.824 -07 000000447 INF: FPGA: Recv ZDACR 28604
17-03-18 04:43:33.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:33.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:33.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:33.984 -07 000000461 INF: FPGA: Recv ZSGSRD 29676
17-03-18 04:43:33.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:33.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:33.994 -07 000000474 INF: FPGA: Recv ZSGSRD 29675
17-03-18 04:43:34.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.004 -07 000000502 INF: FPGA: Recv ZSGSRD 29673
17-03-18 04:43:34.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.014 -07 000000608 INF: FPGA: Recv ZSGSRD 29667
17-03-18 04:43:34.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.024 -07 000000474 INF: FPGA: Recv ZSGSRD 29674
17-03-18 04:43:34.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.034 -07 000000625 INF: FPGA: Recv ZSGSRD 29676
17-03-18 04:43:34.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.044 -07 000000474 INF: FPGA: Recv ZSGSRD 29668
17-03-18 04:43:34.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.054 -07 000000625 INF: FPGA: Recv ZSGSRD 29672
17-03-18 04:43:34.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.064 -07 000000474 INF: FPGA: Recv ZSGSRD 29677
17-03-18 04:43:34.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:34.074 -07 000000474 INF: FPGA: Recv ZSGSRD 29669
17-03-18 04:43:34.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:34.084 -07 000000608 INF: FPGA: Recv ZPIEZORD 25085
17-03-18 04:43:34.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:34.094 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -10.1 V.
17-03-18 04:43:34.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29673 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29667 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:34.094 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29673, posNoise = 4, negNoise = 6
17-03-18 04:43:34.094 -07 000000610 INF: Z Motor: After move to -0.130941, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:34.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:43:34.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:34.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:34.094 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:34.094 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:34.094 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:34.094 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:34.094 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:34.094 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:34.094 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:34.094 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:34.094 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:34.094 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:34.104 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:34.104 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:34.104 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:43:34.104 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:34.114 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:43:34.114 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:43:34.114 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:43:34.114 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:43:34.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28781 150\n [Camera]
17-03-18 04:43:34.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:34.744 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:34.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:34.744 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:34.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:34.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:34.744 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:34.754 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:34.754 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:43:34.754 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:34.754 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:43:34.934 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28781 810
17-03-18 04:43:35.084 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:35.124 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:43:35.124 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:43:35.124 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:35.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:43:35.124 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 04:43:35.124 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:35.134 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:43:35.134 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:43:35.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:43:35.134 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:43:35.294 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:35.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:35.294 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:35.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:35.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:35.294 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:35.294 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:35.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:43:35.294 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:35.294 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:43:35.484 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:43:35.484 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:35.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28781 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-18 04:43:35.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:35.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130948998893608. ------
17-03-18 04:43:35.494 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13765 mm
17-03-18 04:43:35.494 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:35.494 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:35.494 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:43:35.494 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:43:35.504 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:35.674 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:43:35.674 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:43:35.684 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:35.684 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:43:35.684 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:43:35.684 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:35.684 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:35.684 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:43:35.684 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:43:35.694 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:43:35.704 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30069, sync = True, waitForSettling = False)
17-03-18 04:43:35.704 -07 000000608 INF: Z Motor: Moving to -0.137647 mm, started at -0.130949 mm, distance = -6.70 um
17-03-18 04:43:35.704 -07 000000608 INF: FPGA: Xmit ZDACW 30069\n [Z Motor]
17-03-18 04:43:35.724 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:35.724 -07 000000474 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:43:35.724 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:43:35.724 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 218 ms to get response, and 233 ms overall
17-03-18 04:43:35.724 -07 000000608 INF: FPGA: 'ZDACW 30069' command took 0 ms to send, 18 ms to get response, and 26 ms overall
17-03-18 04:43:35.724 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:35.724 -07 000000626 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:35.724 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:35.724 -07 000000626 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:43:35.724 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 228 ms to get response, and 235 ms overall
17-03-18 04:43:35.734 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:35.734 -07 000000474 INF: FPGA: Recv ZDACR 30069
17-03-18 04:43:35.734 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:43:35.734 -07 000000608 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 04:43:35.744 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:35.934 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:35.934 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 04:43:36.114 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:43:36.114 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 04:43:36.164 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:36.174 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:43:36.174 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:43:36.174 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:36.174 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:43:36.174 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-18 04:43:36.694 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:37.124 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:37.124 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:43:37.134 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:37.134 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:37.164 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:37.164 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:37.164 -07 000000626 INF: Y Motor: Moved to 65.7134 after 1671 ms (table move)
17-03-18 04:43:37.174 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137647 mm (DAC = 30069)
17-03-18 04:43:37.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.174 -07 000000474 INF: FPGA: Recv ZSGSRD 30715
17-03-18 04:43:37.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:37.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.184 -07 000000608 INF: FPGA: Recv ZSGSRD 30715
17-03-18 04:43:37.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30718
17-03-18 04:43:37.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.204 -07 000000480 INF: FPGA: Recv ZSGSRD 30709
17-03-18 04:43:37.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.214 -07 000000382 INF: FPGA: Recv ZSGSRD 30716
17-03-18 04:43:37.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.224 -07 000000501 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:43:37.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.234 -07 000000608 INF: FPGA: Recv ZSGSRD 30718
17-03-18 04:43:37.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.244 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.244 -07 000000626 INF: FPGA: Recv ZSGSRD 30719
17-03-18 04:43:37.254 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.254 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.254 -07 000000608 INF: FPGA: Recv ZSGSRD 30716
17-03-18 04:43:37.264 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:37.264 -07 000000382 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:43:37.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.274 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:37.274 -07 000000608 INF: FPGA: Recv ZPIEZORD 26504
17-03-18 04:43:37.284 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:37.284 -07 000000590 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.3 V.
17-03-18 04:43:37.284 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30717 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30717 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30709 (-136.8 uncal um), Max = 30720 (-136.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:43:37.284 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30717, posNoise = 3, negNoise = 8
17-03-18 04:43:37.284 -07 000000590 INF: Z Motor: After move to -0.137647, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:37.284 -07 000000590 INF: Z Motor: Settle wait time = 1469 ms, measure time = 109 ms (allowed 150 ms), total time = 1578 ms
17-03-18 04:43:37.284 -07 000000590 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:37.314 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.985358,
17-03-18 04:43:37.334 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1837 ms
17-03-18 04:43:37.334 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:37.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:37.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:37.334 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:37.344 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:37.344 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:37.344 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:37.344 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:43:37.344 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:37.344 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:37.344 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:37.364 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:43:37.364 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 23 ms.
17-03-18 04:43:37.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:37.404 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:37.704 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:37.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:37.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:37.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 584892872, 0x0, 559484976) start.
17-03-18 04:43:37.744 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:37.744 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:37.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:43:37.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 584892872, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:43:37.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:37.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:37.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:43:37.944 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:37.944 -07 000000474 INF: Autofocus start
17-03-18 04:43:37.944 -07 000000474 INF: MeasureProfile start
17-03-18 04:43:37.944 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:37.954 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:43:37.954 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:37.964 -07 000000474 INF: MeasureProfile done
17-03-18 04:43:37.964 -07 000000474 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 04:43:37.964 -07 000000474 INF: Autofocus finished
17-03-18 04:43:38.154 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:38.154 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:38.154 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137655876369606. ----------
17-03-18 04:43:38.154 -07 000000610 INF: Cycle	128	Tile	8	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:38.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28547, sync = True, waitForSettling = True)
17-03-18 04:43:38.164 -07 000000610 INF: Z Motor: Moving to -0.130680 mm, started at -0.137656 mm, distance = 6.98 um
17-03-18 04:43:38.164 -07 000000610 INF: FPGA: Xmit ZDACW 28547\n [Z Motor]
17-03-18 04:43:38.164 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:43:38.174 -07 000000610 INF: FPGA: 'ZDACW 28547' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:38.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:38.174 -07 000000590 INF: FPGA: Recv ZDACR 28547
17-03-18 04:43:38.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:38.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.334 -07 000000480 INF: FPGA: Recv ZSGSRD 29632
17-03-18 04:43:38.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:38.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.344 -07 000000474 INF: FPGA: Recv ZSGSRD 29633
17-03-18 04:43:38.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.354 -07 000000480 INF: FPGA: Recv ZSGSRD 29631
17-03-18 04:43:38.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.364 -07 000000608 INF: FPGA: Recv ZSGSRD 29629
17-03-18 04:43:38.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29628
17-03-18 04:43:38.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.384 -07 000000626 INF: FPGA: Recv ZSGSRD 29630
17-03-18 04:43:38.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.394 -07 000000382 INF: FPGA: Recv ZSGSRD 29638
17-03-18 04:43:38.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.404 -07 000000608 INF: FPGA: Recv ZSGSRD 29632
17-03-18 04:43:38.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.414 -07 000000590 INF: FPGA: Recv ZSGSRD 29631
17-03-18 04:43:38.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:38.424 -07 000000501 INF: FPGA: Recv ZSGSRD 29634
17-03-18 04:43:38.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:38.434 -07 000000618 INF: FPGA: Recv ZPIEZORD 25053
17-03-18 04:43:38.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:38.444 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -10.0 V.
17-03-18 04:43:38.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29632 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29632 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29628 (-129.9 uncal um), Max = 29638 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:43:38.444 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29632, posNoise = 6, negNoise = 4
17-03-18 04:43:38.444 -07 000000610 INF: Z Motor: After move to -0.130680, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:38.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:43:38.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:38.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:38.444 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:38.444 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:38.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:38.444 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:38.444 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:38.444 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:38.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:38.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:38.444 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:38.444 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:38.454 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:43:38.454 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:38.454 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:43:38.454 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:38.464 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:43:38.464 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:43:38.464 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:43:38.464 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:43:38.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28723 150\n [Camera]
17-03-18 04:43:38.674 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:39.094 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:39.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:39.094 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:39.094 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:39.094 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:43:39.094 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:39.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:39.094 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:39.224 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:39.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:43:39.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28723 810
17-03-18 04:43:39.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:39.494 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:43:39.494 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:43:39.494 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:39.494 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:39.494 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:43:39.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:43:39.614 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:43:39.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:39.614 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:43:39.624 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-18 04:43:39.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:39.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:39.644 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:39.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:39.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:39.644 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:39.654 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:39.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:43:39.654 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:39.654 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:43:39.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:39.834 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:39.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28723 150' command took 2 ms to send, 1355 ms to get response, and 1364 ms overall
17-03-18 04:43:39.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:39.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130685606195796. ------
17-03-18 04:43:39.844 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:39.844 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13723 mm
17-03-18 04:43:39.844 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:39.844 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:39.844 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:43:39.844 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:43:39.854 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:39.854 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:39.864 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:40.054 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:43:40.054 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:43:40.054 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:40.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:43:40.054 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:43:40.054 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:40.054 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:40.054 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:43:40.054 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:40.064 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:43:40.064 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29977, sync = True, waitForSettling = False)
17-03-18 04:43:40.064 -07 000000461 INF: Z Motor: Moving to -0.137226 mm, started at -0.130686 mm, distance = -6.54 um
17-03-18 04:43:40.064 -07 000000461 INF: FPGA: Xmit ZDACW 29977\n [Z Motor]
17-03-18 04:43:40.074 -07 000000590 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:43:40.074 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:40.074 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:43:40.074 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 216 ms to get response, and 226 ms overall
17-03-18 04:43:40.074 -07 000000461 INF: FPGA: 'ZDACW 29977' command took 0 ms to send, 6 ms to get response, and 8 ms overall
17-03-18 04:43:40.074 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:40.074 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 206 ms to get response, and 230 ms overall
17-03-18 04:43:40.074 -07 000000501 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:40.084 -07 000000382 INF: FPGA: Recv ZDACR 29977
17-03-18 04:43:40.084 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 04:43:40.084 -07 000000461 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 04:43:40.084 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:40.084 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:43:40.084 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:40.464 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:43:40.464 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 378 ms overall
17-03-18 04:43:40.514 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:40.514 -07 000000461 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:43:40.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:43:40.524 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:40.524 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:43:40.524 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 04:43:41.474 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:41.474 -07 000000461 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:43:41.484 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:41.484 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:41.514 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:41.514 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:41.514 -07 000000501 INF: Y Motor: Moved to 66.5386 after 1666 ms (table move)
17-03-18 04:43:41.514 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137226 mm (DAC = 29977)
17-03-18 04:43:41.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.514 -07 000000590 INF: FPGA: Recv ZSGSRD 30657
17-03-18 04:43:41.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:41.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.524 -07 000000461 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:43:41.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.534 -07 000000461 INF: FPGA: Recv ZSGSRD 30660
17-03-18 04:43:41.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.544 -07 000000501 INF: FPGA: Recv ZSGSRD 30647
17-03-18 04:43:41.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.554 -07 000000501 INF: FPGA: Recv ZSGSRD 30648
17-03-18 04:43:41.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.564 -07 000000382 INF: FPGA: Recv ZSGSRD 30643
17-03-18 04:43:41.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.574 -07 000000461 INF: FPGA: Recv ZSGSRD 30649
17-03-18 04:43:41.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.584 -07 000000501 INF: FPGA: Recv ZSGSRD 30655
17-03-18 04:43:41.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.594 -07 000000501 INF: FPGA: Recv ZSGSRD 30652
17-03-18 04:43:41.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.604 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:41.604 -07 000000382 INF: FPGA: Recv ZSGSRD 30652
17-03-18 04:43:41.614 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.614 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:41.614 -07 000000501 INF: FPGA: Recv ZPIEZORD 26416
17-03-18 04:43:41.624 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:41.624 -07 000000608 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.3 V.
17-03-18 04:43:41.624 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30651 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30651 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30643 (-136.4 uncal um), Max = 30660 (-136.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:43:41.624 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30651, posNoise = 9, negNoise = 8
17-03-18 04:43:41.624 -07 000000608 INF: Z Motor: After move to -0.137226, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:41.624 -07 000000608 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-18 04:43:41.624 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:41.674 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1827 ms
17-03-18 04:43:41.674 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:41.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:41.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:41.674 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:41.674 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:41.674 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:41.674 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:41.674 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:41.674 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:41.684 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:41.684 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:41.684 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:43:41.684 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:43:41.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:41.694 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:41.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:41.734 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:42.034 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:42.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:42.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:42.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) start.
17-03-18 04:43:42.074 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:42.074 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:42.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:43:42.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:43:42.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:42.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:42.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:43:42.174 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:42.174 -07 000000512 INF: Autofocus start
17-03-18 04:43:42.174 -07 000000512 INF: MeasureProfile start
17-03-18 04:43:42.174 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:42.184 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:42.184 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:42.194 -07 000000512 INF: MeasureProfile done
17-03-18 04:43:42.194 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:43:42.194 -07 000000512 INF: Autofocus finished
17-03-18 04:43:42.384 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:42.384 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:43:42.384 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.13723187836825. ----------
17-03-18 04:43:42.384 -07 000000610 INF: Cycle	128	Tile	9	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:42.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28472, sync = True, waitForSettling = True)
17-03-18 04:43:42.394 -07 000000610 INF: Z Motor: Moving to -0.130336 mm, started at -0.137232 mm, distance = 6.90 um
17-03-18 04:43:42.414 -07 000000610 INF: FPGA: Xmit ZDACW 28472\n [Z Motor]
17-03-18 04:43:42.414 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:43:42.424 -07 000000610 INF: FPGA: 'ZDACW 28472' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:43:42.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:42.424 -07 000000608 INF: FPGA: Recv ZDACR 28472
17-03-18 04:43:42.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.584 -07 000000467 INF: FPGA: Recv ZSGSRD 29572
17-03-18 04:43:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.594 -07 000000591 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:43:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.604 -07 000000424 INF: FPGA: Recv ZSGSRD 29577
17-03-18 04:43:42.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.614 -07 000000591 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:43:42.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29574
17-03-18 04:43:42.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.634 -07 000000591 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:43:42.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29578
17-03-18 04:43:42.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.654 -07 000000591 INF: FPGA: Recv ZSGSRD 29577
17-03-18 04:43:42.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.664 -07 000000467 INF: FPGA: Recv ZSGSRD 29578
17-03-18 04:43:42.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:42.684 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.975845,
17-03-18 04:43:42.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29582
17-03-18 04:43:42.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:43:42.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:42.694 -07 000000512 INF: FPGA: Recv ZPIEZORD 25030
17-03-18 04:43:42.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:42.704 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -10.0 V.
17-03-18 04:43:42.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29578 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29578 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29572 (-129.5 uncal um), Max = 29582 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:42.704 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29578, posNoise = 4, negNoise = 6
17-03-18 04:43:42.704 -07 000000610 INF: Z Motor: After move to -0.130336, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:42.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-18 04:43:42.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:42.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:42.704 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:42.704 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:42.704 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:42.704 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:42.704 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:42.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:42.704 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:42.704 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:42.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:42.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:42.714 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:42.714 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:42.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:43:42.714 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:42.724 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:43:42.724 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:43:42.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:43:42.724 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:43:42.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28648 150\n [Camera]
17-03-18 04:43:42.934 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:43.364 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:43.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:43.364 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:43.364 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:43.364 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 04:43:43.364 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:43.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:43.364 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:43.364 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:43.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:43:43.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28648 810
17-03-18 04:43:43.704 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:43.754 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:43:43.754 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:43:43.754 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:43.764 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:43.764 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:43:43.764 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:43:43.764 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:43:43.764 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:43.764 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:43.774 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:43:43.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:43.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:43.914 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:43.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:43.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:43.914 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:43.924 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:43.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:43.924 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:43.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:44.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:44.104 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:44.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28648 150' command took 2 ms to send, 1354 ms to get response, and 1376 ms overall
17-03-18 04:43:44.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:44.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130338698740141. ------
17-03-18 04:43:44.104 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:44.104 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13707 mm
17-03-18 04:43:44.104 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:44.114 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:43:44.114 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 04:43:44.114 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:44.304 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:43:44.304 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:43:44.304 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:44.304 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:44.304 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:43:44.314 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:43:44.314 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:44.314 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:44.314 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:43:44.314 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:43:44.324 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29943, sync = True, waitForSettling = False)
17-03-18 04:43:44.324 -07 000000382 INF: Z Motor: Moving to -0.137070 mm, started at -0.130339 mm, distance = -6.73 um
17-03-18 04:43:44.324 -07 000000382 INF: FPGA: Xmit ZDACW 29943\n [Z Motor]
17-03-18 04:43:44.324 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:44.324 -07 000000467 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:43:44.324 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 220 ms overall
17-03-18 04:43:44.324 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 216 ms overall
17-03-18 04:43:44.324 -07 000000606 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:44.324 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:44.324 -07 000000606 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:43:44.334 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:44.334 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:43:44.334 -07 000000382 INF: FPGA: 'ZDACW 29943' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 04:43:44.344 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:44.354 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:44.354 -07 000000467 INF: FPGA: Recv ZDACR 29943
17-03-18 04:43:44.364 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:43:44.364 -07 000000382 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 04:43:44.544 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:44.544 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 213 ms overall
17-03-18 04:43:44.704 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:43:44.714 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 380 ms overall
17-03-18 04:43:44.754 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:44.764 -07 000000424 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:43:44.774 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:44.774 -07 000000606 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:44.774 -07 000000606 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:43:44.774 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.221 mm/sec
17-03-18 04:43:45.724 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:45.724 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:43:45.734 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:45.734 -07 000000606 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:45.764 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:45.764 -07 000000606 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:45.764 -07 000000606 INF: Y Motor: Moved to 67.3711 after 1648 ms (table move)
17-03-18 04:43:45.764 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137070 mm (DAC = 29943)
17-03-18 04:43:45.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.764 -07 000000382 INF: FPGA: Recv ZSGSRD 30627
17-03-18 04:43:45.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:45.774 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.774 -07 000000382 INF: FPGA: Recv ZSGSRD 30624
17-03-18 04:43:45.784 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.784 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.784 -07 000000424 INF: FPGA: Recv ZSGSRD 30616
17-03-18 04:43:45.794 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.794 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.794 -07 000000606 INF: FPGA: Recv ZSGSRD 30631
17-03-18 04:43:45.804 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.804 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.804 -07 000000424 INF: FPGA: Recv ZSGSRD 30628
17-03-18 04:43:45.814 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.814 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.814 -07 000000382 INF: FPGA: Recv ZSGSRD 30627
17-03-18 04:43:45.824 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.824 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.824 -07 000000606 INF: FPGA: Recv ZSGSRD 30628
17-03-18 04:43:45.834 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.834 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.834 -07 000000382 INF: FPGA: Recv ZSGSRD 30630
17-03-18 04:43:45.844 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.844 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.844 -07 000000424 INF: FPGA: Recv ZSGSRD 30629
17-03-18 04:43:45.854 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.854 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:45.854 -07 000000382 INF: FPGA: Recv ZSGSRD 30623
17-03-18 04:43:45.864 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.864 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:45.864 -07 000000424 INF: FPGA: Recv ZPIEZORD 26434
17-03-18 04:43:45.874 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:45.874 -07 000000512 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.2 V.
17-03-18 04:43:45.874 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30626 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30628 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30616 (-136.2 uncal um), Max = 30631 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:43:45.874 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30626, posNoise = 5, negNoise = 10
17-03-18 04:43:45.874 -07 000000512 INF: Z Motor: After move to -0.137070, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:45.874 -07 000000512 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-18 04:43:45.874 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:45.924 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1810 ms
17-03-18 04:43:45.924 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:45.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:45.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:45.924 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:45.924 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:45.924 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:45.924 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:45.924 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:45.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:45.934 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:45.934 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:45.934 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:43:45.934 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:43:45.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:45.984 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:46.284 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:46.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:46.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:46.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) start.
17-03-18 04:43:46.324 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:46.324 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:46.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 04:43:46.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:43:46.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:46.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:46.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:43:46.424 -07 000000467 INF: Autofocus start
17-03-18 04:43:46.424 -07 000000467 INF: MeasureProfile start
17-03-18 04:43:46.424 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:46.424 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:46.434 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:43:46.434 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:46.434 -07 000000467 INF: MeasureProfile done
17-03-18 04:43:46.434 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:43:46.434 -07 000000467 INF: Autofocus finished
17-03-18 04:43:46.634 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:46.634 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:43:46.634 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.137071273064706. ----------
17-03-18 04:43:46.644 -07 000000610 INF: Cycle	128	Tile	10	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:46.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28467, sync = True, waitForSettling = True)
17-03-18 04:43:46.644 -07 000000610 INF: Z Motor: Moving to -0.130314 mm, started at -0.137071 mm, distance = 6.76 um
17-03-18 04:43:46.644 -07 000000610 INF: FPGA: Xmit ZDACW 28467\n [Z Motor]
17-03-18 04:43:46.644 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:43:46.654 -07 000000610 INF: FPGA: 'ZDACW 28467' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:46.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:46.654 -07 000000606 INF: FPGA: Recv ZDACR 28467
17-03-18 04:43:46.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:46.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:46.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:46.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.814 -07 000000625 INF: FPGA: Recv ZSGSRD 29577
17-03-18 04:43:46.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:46.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29576
17-03-18 04:43:46.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29574
17-03-18 04:43:46.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.844 -07 000000447 INF: FPGA: Recv ZSGSRD 29582
17-03-18 04:43:46.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.854 -07 000000625 INF: FPGA: Recv ZSGSRD 29573
17-03-18 04:43:46.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.864 -07 000000480 INF: FPGA: Recv ZSGSRD 29573
17-03-18 04:43:46.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.874 -07 000000625 INF: FPGA: Recv ZSGSRD 29580
17-03-18 04:43:46.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29579
17-03-18 04:43:46.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.894 -07 000000512 INF: FPGA: Recv ZSGSRD 29579
17-03-18 04:43:46.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:46.904 -07 000000424 INF: FPGA: Recv ZSGSRD 29571
17-03-18 04:43:46.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:46.914 -07 000000625 INF: FPGA: Recv ZPIEZORD 25030
17-03-18 04:43:46.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:46.924 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -10.0 V.
17-03-18 04:43:46.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29576 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29576 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29571 (-129.5 uncal um), Max = 29582 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:43:46.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29576, posNoise = 6, negNoise = 5
17-03-18 04:43:46.924 -07 000000610 INF: Z Motor: After move to -0.130314, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:46.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:43:46.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:46.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:46.924 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:46.924 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:46.924 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:46.924 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:46.924 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:46.924 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:46.924 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:46.924 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:46.924 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:46.924 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:46.934 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:46.934 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:46.934 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:43:46.934 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:46.944 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:43:46.944 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:43:46.944 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:43:46.944 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:43:46.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28644 150\n [Camera]
17-03-18 04:43:47.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:47.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:47.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:47.574 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:47.574 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:47.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 04:43:47.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:47.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:47.574 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:47.574 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:47.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:43:47.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28644 810
17-03-18 04:43:47.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:47.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:43:47.964 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:43:47.964 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:47.964 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:47.964 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:43:47.964 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:43:47.964 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:47.964 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:47.964 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:43:48.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 04:43:48.094 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.994908,
17-03-18 04:43:48.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:48.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:48.114 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:48.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:48.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:48.124 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:48.124 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:48.124 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:48.124 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:48.124 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:48.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:48.304 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:48.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28644 150' command took 2 ms to send, 1358 ms to get response, and 1364 ms overall
17-03-18 04:43:48.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:48.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130325850315857. ------
17-03-18 04:43:48.314 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:48.314 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13671 mm
17-03-18 04:43:48.314 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:48.314 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:48.324 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:48.324 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:48.324 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:43:48.324 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:43:48.324 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29864, sync = True, waitForSettling = False)
17-03-18 04:43:48.324 -07 000000606 INF: Z Motor: Moving to -0.136709 mm, started at -0.130326 mm, distance = -6.38 um
17-03-18 04:43:48.334 -07 000000606 INF: FPGA: Xmit ZDACW 29864\n [Z Motor]
17-03-18 04:43:48.334 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:43:48.344 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:48.344 -07 000000606 INF: FPGA: 'ZDACW 29864' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:43:48.344 -07 000000467 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:43:48.354 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:43:48.354 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:48.354 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:48.354 -07 000000467 INF: FPGA: Recv ZDACR 29864
17-03-18 04:43:48.354 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:48.354 -07 000000625 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:43:48.364 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:43:48.364 -07 000000606 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:43:48.364 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:48.524 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:48.524 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:48.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:43:48.524 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:43:48.524 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:48.524 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:43:48.524 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:43:48.524 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:48.534 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:48.534 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:43:48.534 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:43:48.534 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:43:48.734 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:43:48.734 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:43:48.784 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:48.794 -07 000000606 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:43:48.794 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:43:48.794 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:48.794 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:43:48.794 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.842 mm, average velocity = 2.186 mm/sec
17-03-18 04:43:49.744 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:49.744 -07 000000512 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:43:49.754 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.754 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:49.784 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:49.784 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:49.784 -07 000000625 INF: Y Motor: Moved to 68.2041 after 1460 ms (table move)
17-03-18 04:43:49.784 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136709 mm (DAC = 29864)
17-03-18 04:43:49.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.784 -07 000000467 INF: FPGA: Recv ZSGSRD 30577
17-03-18 04:43:49.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:49.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.794 -07 000000606 INF: FPGA: Recv ZSGSRD 30569
17-03-18 04:43:49.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.804 -07 000000447 INF: FPGA: Recv ZSGSRD 30567
17-03-18 04:43:49.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30564
17-03-18 04:43:49.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.824 -07 000000625 INF: FPGA: Recv ZSGSRD 30566
17-03-18 04:43:49.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30568
17-03-18 04:43:49.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.844 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.844 -07 000000606 INF: FPGA: Recv ZSGSRD 30569
17-03-18 04:43:49.854 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.854 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.854 -07 000000467 INF: FPGA: Recv ZSGSRD 30571
17-03-18 04:43:49.864 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.864 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.864 -07 000000382 INF: FPGA: Recv ZSGSRD 30578
17-03-18 04:43:49.874 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.874 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:49.874 -07 000000467 INF: FPGA: Recv ZSGSRD 30568
17-03-18 04:43:49.884 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.884 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:49.884 -07 000000382 INF: FPGA: Recv ZPIEZORD 26334
17-03-18 04:43:49.894 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:49.894 -07 000000626 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.3 V.
17-03-18 04:43:49.894 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30570 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30568 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30564 (-135.9 uncal um), Max = 30578 (-136.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:43:49.894 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30570, posNoise = 8, negNoise = 6
17-03-18 04:43:49.894 -07 000000626 INF: Z Motor: After move to -0.136709, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:49.894 -07 000000626 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:43:49.894 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:49.944 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:43:49.944 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:49.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:49.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:49.944 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:49.944 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:49.944 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:49.944 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:49.954 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:49.954 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:49.954 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:49.954 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:49.954 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:43:49.964 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:43:49.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:50.004 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:50.304 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:50.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:50.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:50.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) start.
17-03-18 04:43:50.344 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:50.344 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:50.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:43:50.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:43:50.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:50.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:43:50.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:43:50.444 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:50.444 -07 000000606 INF: Autofocus start
17-03-18 04:43:50.444 -07 000000606 INF: MeasureProfile start
17-03-18 04:43:50.444 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:50.454 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:50.454 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:50.464 -07 000000606 INF: MeasureProfile done
17-03-18 04:43:50.464 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:43:50.464 -07 000000606 INF: Autofocus finished
17-03-18 04:43:50.654 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:50.654 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:50.654 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136711517184767. ----------
17-03-18 04:43:50.654 -07 000000610 INF: Cycle	128	Tile	11	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:50.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28371, sync = True, waitForSettling = True)
17-03-18 04:43:50.664 -07 000000610 INF: Z Motor: Moving to -0.129874 mm, started at -0.136712 mm, distance = 6.84 um
17-03-18 04:43:50.664 -07 000000610 INF: FPGA: Xmit ZDACW 28371\n [Z Motor]
17-03-18 04:43:50.664 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:43:50.674 -07 000000610 INF: FPGA: 'ZDACW 28371' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:43:50.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:50.674 -07 000000606 INF: FPGA: Recv ZDACR 28371
17-03-18 04:43:50.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.834 -07 000000474 INF: FPGA: Recv ZSGSRD 29504
17-03-18 04:43:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.844 -07 000000626 INF: FPGA: Recv ZSGSRD 29510
17-03-18 04:43:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.854 -07 000000625 INF: FPGA: Recv ZSGSRD 29519
17-03-18 04:43:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.864 -07 000000382 INF: FPGA: Recv ZSGSRD 29512
17-03-18 04:43:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.874 -07 000000467 INF: FPGA: Recv ZSGSRD 29499
17-03-18 04:43:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.884 -07 000000626 INF: FPGA: Recv ZSGSRD 29507
17-03-18 04:43:50.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.894 -07 000000626 INF: FPGA: Recv ZSGSRD 29508
17-03-18 04:43:50.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.904 -07 000000382 INF: FPGA: Recv ZSGSRD 29504
17-03-18 04:43:50.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29510
17-03-18 04:43:50.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:50.924 -07 000000606 INF: FPGA: Recv ZSGSRD 29503
17-03-18 04:43:50.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:50.934 -07 000000626 INF: FPGA: Recv ZPIEZORD 24905
17-03-18 04:43:50.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:50.944 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -10.1 V.
17-03-18 04:43:50.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29508 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29499 (-129.1 uncal um), Max = 29519 (-129.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:43:50.944 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29508, posNoise = 11, negNoise = 9
17-03-18 04:43:50.944 -07 000000610 INF: Z Motor: After move to -0.129874, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:50.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:43:50.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:50.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:50.944 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:50.944 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:50.944 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:50.944 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:50.944 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:50.944 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:50.944 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:43:50.944 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:50.944 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:50.944 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:50.954 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:43:50.954 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:50.954 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:50.954 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:50.964 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:43:50.964 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:43:50.964 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:43:50.964 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:43:50.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28548 150\n [Camera]
17-03-18 04:43:51.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:51.594 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:51.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:51.594 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:51.594 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:51.594 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 04:43:51.594 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:51.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:51.594 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:51.594 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:51.594 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:43:51.694 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:51.814 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28548 813
17-03-18 04:43:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:51.934 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:43:51.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:43:51.984 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:43:51.984 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:51.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:43:51.984 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:43:51.984 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:51.994 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:51.994 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:43:51.994 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:51.994 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:43:52.134 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1165
17-03-18 04:43:52.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1165
17-03-18 04:43:52.144 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:52.144 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1165
17-03-18 04:43:52.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1165
17-03-18 04:43:52.144 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:52.144 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:52.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:43:52.144 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:52.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:43:52.324 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:43:52.324 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:52.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28548 150' command took 2 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-18 04:43:52.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:52.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129889003890217. ------
17-03-18 04:43:52.334 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:52.334 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13655 mm
17-03-18 04:43:52.334 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:52.334 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:52.334 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:43:52.334 -07 000000474 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 04:43:52.344 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:52.344 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29829, sync = True, waitForSettling = False)
17-03-18 04:43:52.344 -07 000000606 INF: Z Motor: Moving to -0.136548 mm, started at -0.129889 mm, distance = -6.66 um
17-03-18 04:43:52.344 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:52.344 -07 000000618 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:43:52.354 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:52.354 -07 000000474 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:52.354 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:52.354 -07 000000474 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:52.354 -07 000000474 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:43:52.364 -07 000000606 INF: FPGA: Xmit ZDACW 29829\n [Z Motor]
17-03-18 04:43:52.364 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:43:52.374 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:52.374 -07 000000606 INF: FPGA: 'ZDACW 29829' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:43:52.384 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:52.384 -07 000000447 INF: FPGA: Recv ZDACR 29829
17-03-18 04:43:52.394 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:43:52.394 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:43:52.534 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:43:52.534 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:43:52.534 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:52.534 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:52.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:43:52.534 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:43:52.534 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:52.544 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:52.544 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:43:52.544 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:43:52.554 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:52.554 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:43:52.744 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:43:52.744 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:43:52.794 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:52.804 -07 000000581 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:43:52.804 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:43:52.804 -07 000000474 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:52.804 -07 000000474 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:43:52.804 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-18 04:43:53.454 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.985358,
17-03-18 04:43:53.754 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:53.754 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:43:53.764 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.764 -07 000000474 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:53.794 -07 000000474 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:53.794 -07 000000474 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:53.794 -07 000000474 INF: Y Motor: Moved to 69.0264 after 1452 ms (table move)
17-03-18 04:43:53.794 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136548 mm (DAC = 29829)
17-03-18 04:43:53.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.794 -07 000000447 INF: FPGA: Recv ZSGSRD 30550
17-03-18 04:43:53.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:43:53.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30545
17-03-18 04:43:53.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.814 -07 000000581 INF: FPGA: Recv ZSGSRD 30543
17-03-18 04:43:53.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.824 -07 000000569 INF: FPGA: Recv ZSGSRD 30533
17-03-18 04:43:53.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.834 -07 000000581 INF: FPGA: Recv ZSGSRD 30542
17-03-18 04:43:53.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.844 -07 000000626 INF: FPGA: Recv ZSGSRD 30537
17-03-18 04:43:53.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.854 -07 000000382 INF: FPGA: Recv ZSGSRD 30543
17-03-18 04:43:53.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.864 -07 000000625 INF: FPGA: Recv ZSGSRD 30545
17-03-18 04:43:53.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.874 -07 000000382 INF: FPGA: Recv ZSGSRD 30552
17-03-18 04:43:53.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:53.884 -07 000000625 INF: FPGA: Recv ZSGSRD 30539
17-03-18 04:43:53.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.894 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:53.894 -07 000000626 INF: FPGA: Recv ZPIEZORD 26348
17-03-18 04:43:53.904 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:53.904 -07 000000467 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.2 V.
17-03-18 04:43:53.904 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30543 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30543 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30533 (-135.7 uncal um), Max = 30552 (-135.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:43:53.904 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30543, posNoise = 9, negNoise = 10
17-03-18 04:43:53.904 -07 000000467 INF: Z Motor: After move to -0.136548, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:53.904 -07 000000467 INF: Z Motor: Settle wait time = 1454 ms, measure time = 106 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:43:53.904 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:53.954 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:43:53.954 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:53.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:53.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:53.954 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:53.954 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:53.954 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:53.954 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:53.954 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:43:53.954 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:53.964 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:53.964 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:53.964 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:43:53.964 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:43:53.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:54.014 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:54.314 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:54.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:54.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:54.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) start.
17-03-18 04:43:54.354 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:54.354 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:54.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:43:54.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:43:54.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:54.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:43:54.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:43:54.454 -07 000000447 INF: Autofocus start
17-03-18 04:43:54.454 -07 000000447 INF: MeasureProfile start
17-03-18 04:43:54.454 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:54.454 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:54.464 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:43:54.464 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:54.464 -07 000000447 INF: MeasureProfile done
17-03-18 04:43:54.464 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:43:54.464 -07 000000447 INF: Autofocus finished
17-03-18 04:43:54.664 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:54.664 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:43:54.664 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.13653806345694. ----------
17-03-18 04:43:54.664 -07 000000610 INF: Cycle	128	Tile	12	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:54.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28337, sync = True, waitForSettling = True)
17-03-18 04:43:54.674 -07 000000610 INF: Z Motor: Moving to -0.129718 mm, started at -0.136538 mm, distance = 6.82 um
17-03-18 04:43:54.674 -07 000000610 INF: FPGA: Xmit ZDACW 28337\n [Z Motor]
17-03-18 04:43:54.674 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:43:54.684 -07 000000610 INF: FPGA: 'ZDACW 28337' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:54.684 -07 000000512 INF: FPGA: Recv ZDACR 28337
17-03-18 04:43:54.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29480
17-03-18 04:43:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:54.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.854 -07 000000502 INF: FPGA: Recv ZSGSRD 29480
17-03-18 04:43:54.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29482
17-03-18 04:43:54.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.874 -07 000000581 INF: FPGA: Recv ZSGSRD 29478
17-03-18 04:43:54.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29486
17-03-18 04:43:54.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.894 -07 000000474 INF: FPGA: Recv ZSGSRD 29483
17-03-18 04:43:54.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.904 -07 000000626 INF: FPGA: Recv ZSGSRD 29477
17-03-18 04:43:54.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.914 -07 000000569 INF: FPGA: Recv ZSGSRD 29484
17-03-18 04:43:54.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:43:54.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.924 -07 000000626 INF: FPGA: Recv ZSGSRD 29480
17-03-18 04:43:54.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:54.934 -07 000000501 INF: FPGA: Recv ZSGSRD 29483
17-03-18 04:43:54.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:54.944 -07 000000618 INF: FPGA: Recv ZPIEZORD 24937
17-03-18 04:43:54.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:54.954 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -10.0 V.
17-03-18 04:43:54.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29481 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29481 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29477 (-128.9 uncal um), Max = 29486 (-129.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:43:54.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29481, posNoise = 5, negNoise = 4
17-03-18 04:43:54.954 -07 000000610 INF: Z Motor: After move to -0.129718, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:54.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:43:54.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:54.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:54.954 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:54.954 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:54.954 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:54.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:54.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:43:54.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:54.954 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:54.954 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:54.954 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:43:54.954 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:54.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:54.954 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:54.964 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:43:54.964 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:54.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:43:54.964 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:43:54.964 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:43:54.964 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:43:54.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28513 150\n [Camera]
17-03-18 04:43:55.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:55.594 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:43:55.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:43:55.594 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:55.594 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:55.594 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:43:55.604 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:43:55.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:43:55.604 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:55.604 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:55.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:43:55.784 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28513 810
17-03-18 04:43:55.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 962
17-03-18 04:43:55.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:43:55.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:43:55.994 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:56.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:43:56.004 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:43:56.004 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:56.004 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:56.004 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:43:56.004 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:56.014 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:43:56.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:43:56.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:43:56.144 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:56.144 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:56.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:43:56.144 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:43:56.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:43:56.144 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:56.144 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:56.144 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:43:56.334 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:43:56.334 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:43:56.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28513 150' command took 2 ms to send, 1356 ms to get response, and 1364 ms overall
17-03-18 04:43:56.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:43:56.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.12971555016239. ------
17-03-18 04:43:56.344 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:56.344 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13617 mm
17-03-18 04:43:56.344 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:43:56.344 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:43:56.344 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:43:56.344 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:56.344 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29746, sync = True, waitForSettling = False)
17-03-18 04:43:56.344 -07 000000467 INF: Z Motor: Moving to -0.136168 mm, started at -0.129716 mm, distance = -6.45 um
17-03-18 04:43:56.354 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:43:56.354 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:56.354 -07 000000474 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:43:56.364 -07 000000467 INF: FPGA: Xmit ZDACW 29746\n [Z Motor]
17-03-18 04:43:56.364 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:43:56.364 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:56.364 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:43:56.364 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:43:56.364 -07 000000569 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:43:56.374 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:43:56.374 -07 000000467 INF: FPGA: 'ZDACW 29746' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:43:56.384 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:43:56.394 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:56.394 -07 000000501 INF: FPGA: Recv ZDACR 29746
17-03-18 04:43:56.404 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:43:56.404 -07 000000467 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:43:56.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:43:56.544 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:43:56.544 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:56.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:43:56.544 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:43:56.544 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:56.554 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:43:56.554 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:43:56.554 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:43:56.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:43:56.574 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:43:56.574 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:43:56.694 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:43:56.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:43:56.764 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:43:56.764 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-18 04:43:56.814 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:56.814 -07 000000626 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:43:56.824 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:56.824 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:56.824 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:43:56.824 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 04:43:57.774 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:43:57.774 -07 000000502 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:43:57.784 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:43:57.784 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:43:57.814 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:43:57.814 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:43:57.814 -07 000000569 INF: Y Motor: Moved to 69.8628 after 1464 ms (table move)
17-03-18 04:43:57.814 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136168 mm (DAC = 29746)
17-03-18 04:43:57.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30492
17-03-18 04:43:57.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:43:57.824 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.824 -07 000000569 INF: FPGA: Recv ZSGSRD 30487
17-03-18 04:43:57.834 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.834 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.834 -07 000000512 INF: FPGA: Recv ZSGSRD 30487
17-03-18 04:43:57.844 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.844 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.844 -07 000000606 INF: FPGA: Recv ZSGSRD 30489
17-03-18 04:43:57.854 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.854 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.854 -07 000000569 INF: FPGA: Recv ZSGSRD 30491
17-03-18 04:43:57.864 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.864 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.864 -07 000000512 INF: FPGA: Recv ZSGSRD 30488
17-03-18 04:43:57.874 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.874 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.874 -07 000000606 INF: FPGA: Recv ZSGSRD 30487
17-03-18 04:43:57.884 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.884 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.884 -07 000000569 INF: FPGA: Recv ZSGSRD 30485
17-03-18 04:43:57.894 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.894 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.894 -07 000000606 INF: FPGA: Recv ZSGSRD 30478
17-03-18 04:43:57.904 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.904 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:57.904 -07 000000618 INF: FPGA: Recv ZSGSRD 30489
17-03-18 04:43:57.914 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.914 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:57.914 -07 000000512 INF: FPGA: Recv ZPIEZORD 26254
17-03-18 04:43:57.924 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:57.924 -07 000000581 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -9.3 V.
17-03-18 04:43:57.924 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30487 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30488 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30478 (-135.3 uncal um), Max = 30492 (-135.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:43:57.924 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30487, posNoise = 5, negNoise = 9
17-03-18 04:43:57.924 -07 000000581 INF: Z Motor: After move to -0.136168, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:57.924 -07 000000581 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:43:57.924 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:43:57.974 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:43:57.974 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:43:57.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:57.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:57.974 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:57.974 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:43:57.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:57.974 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:57.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:57.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:43:57.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:43:57.974 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:43:57.984 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:43:57.984 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:43:57.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:43:58.034 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:43:58.334 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:43:58.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:43:58.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:43:58.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 04:43:58.374 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:43:58.374 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:43:58.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:43:58.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:43:58.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:43:58.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:43:58.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:43:58.474 -07 000000618 INF: Autofocus start
17-03-18 04:43:58.474 -07 000000618 INF: MeasureProfile start
17-03-18 04:43:58.484 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:43:58.484 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:43:58.494 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:43:58.494 -07 000000618 INF: MeasureProfile done
17-03-18 04:43:58.494 -07 000000618 INF: X=-112  Z correction [um]=-0.5485987
17-03-18 04:43:58.494 -07 000000618 INF: Autofocus finished
17-03-18 04:43:58.504 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:43:58.704 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:43:58.704 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:43:58.704 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136178307577001. ----------
17-03-18 04:43:58.704 -07 000000610 INF: Cycle	128	Tile	13	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:43:58.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28139, sync = True, waitForSettling = True)
17-03-18 04:43:58.714 -07 000000610 INF: Z Motor: Moving to -0.128812 mm, started at -0.136178 mm, distance = 7.37 um
17-03-18 04:43:58.714 -07 000000610 INF: FPGA: Xmit ZDACW 28139\n [Z Motor]
17-03-18 04:43:58.714 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:43:58.724 -07 000000610 INF: FPGA: 'ZDACW 28139' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:43:58.724 -07 000000502 INF: FPGA: Recv ZDACR 28139
17-03-18 04:43:58.734 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:43:58.834 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.03576,
17-03-18 04:43:58.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.884 -07 000000626 INF: FPGA: Recv ZSGSRD 29350
17-03-18 04:43:58.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.894 -07 000000382 INF: FPGA: Recv ZSGSRD 29339
17-03-18 04:43:58.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29339
17-03-18 04:43:58.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.914 -07 000000447 INF: FPGA: Recv ZSGSRD 29342
17-03-18 04:43:58.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.924 -07 000000512 INF: FPGA: Recv ZSGSRD 29335
17-03-18 04:43:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.934 -07 000000447 INF: FPGA: Recv ZSGSRD 29340
17-03-18 04:43:58.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.944 -07 000000501 INF: FPGA: Recv ZSGSRD 29341
17-03-18 04:43:58.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.954 -07 000000512 INF: FPGA: Recv ZSGSRD 29342
17-03-18 04:43:58.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.964 -07 000000501 INF: FPGA: Recv ZSGSRD 29352
17-03-18 04:43:58.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:43:58.974 -07 000000467 INF: FPGA: Recv ZSGSRD 29335
17-03-18 04:43:58.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:43:58.984 -07 000000474 INF: FPGA: Recv ZPIEZORD 24736
17-03-18 04:43:58.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:43:58.994 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -10.1 V.
17-03-18 04:43:58.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29342 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29340 (-128.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29335 (-128.0 uncal um), Max = 29352 (-128.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:43:58.994 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29342, posNoise = 10, negNoise = 7
17-03-18 04:43:58.994 -07 000000610 INF: Z Motor: After move to -0.128812, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:43:58.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:43:58.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:43:58.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:43:58.994 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:43:58.994 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:43:58.994 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:43:58.994 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:43:58.994 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:43:58.994 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:43:58.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:43:58.994 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:43:58.994 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:43:58.994 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:43:59.004 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:43:59.004 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:43:59.004 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:43:59.004 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:43:59.014 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:43:59.014 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:43:59.014 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:43:59.014 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:43:59.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28316 150\n [Camera]
17-03-18 04:43:59.214 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:43:59.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-18 04:43:59.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-18 04:43:59.644 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:43:59.644 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:43:59.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:43:59.644 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-18 04:43:59.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-18 04:43:59.644 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:43:59.644 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:43:59.644 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:43:59.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28316 810
17-03-18 04:43:59.984 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:00.034 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:44:00.034 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:44:00.034 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:00.044 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:00.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:44:00.044 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:44:00.044 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:44:00.044 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:00.044 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:00.054 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:44:00.184 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1165
17-03-18 04:44:00.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1165
17-03-18 04:44:00.194 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:00.194 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:00.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:44:00.194 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1165
17-03-18 04:44:00.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1165
17-03-18 04:44:00.194 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:00.194 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:00.194 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:44:00.374 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:44:00.384 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:00.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28316 150' command took 2 ms to send, 1360 ms to get response, and 1363 ms overall
17-03-18 04:44:00.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:44:00.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.128822584674685. ------
17-03-18 04:44:00.384 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:00.384 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13519 mm
17-03-18 04:44:00.384 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:44:00.384 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:44:00.384 -07 000000625 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:44:00.384 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29531, sync = True, waitForSettling = False)
17-03-18 04:44:00.384 -07 000000382 INF: Z Motor: Moving to -0.135184 mm, started at -0.128823 mm, distance = -6.36 um
17-03-18 04:44:00.384 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:00.394 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:44:00.394 -07 000000382 INF: FPGA: Xmit ZDACW 29531\n [Z Motor]
17-03-18 04:44:00.394 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:44:00.404 -07 000000382 INF: FPGA: 'ZDACW 29531' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:44:00.404 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:44:00.414 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:00.414 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:44:00.424 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:00.424 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:44:00.424 -07 000000625 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:00.424 -07 000000625 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:44:00.424 -07 000000625 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:44:00.424 -07 000000502 INF: FPGA: Recv ZDACR 29531
17-03-18 04:44:00.434 -07 000000382 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:44:00.434 -07 000000382 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:44:00.434 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:44:00.594 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:44:00.594 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:44:00.594 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:00.594 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:44:00.594 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:44:00.594 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:00.604 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:00.604 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:44:00.604 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:44:00.604 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:44:00.604 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:44:00.604 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:44:00.804 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:44:00.804 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:44:00.854 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:00.864 -07 000000512 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:44:00.864 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:44:00.864 -07 000000625 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:00.864 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:44:00.864 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-18 04:44:01.694 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:01.814 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:01.814 -07 000000447 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:44:01.824 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.824 -07 000000625 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:01.854 -07 000000625 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:01.854 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:01.854 -07 000000625 INF: Y Motor: Moved to 70.6875 after 1464 ms (table move)
17-03-18 04:44:01.854 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135184 mm (DAC = 29531)
17-03-18 04:44:01.854 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.854 -07 000000382 INF: FPGA: Recv ZSGSRD 30338
17-03-18 04:44:01.864 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:01.864 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30337
17-03-18 04:44:01.874 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.874 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.874 -07 000000447 INF: FPGA: Recv ZSGSRD 30338
17-03-18 04:44:01.884 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:01.884 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.884 -07 000000625 INF: FPGA: Recv ZSGSRD 30329
17-03-18 04:44:01.894 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.894 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.894 -07 000000502 INF: FPGA: Recv ZSGSRD 30329
17-03-18 04:44:01.904 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.904 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.904 -07 000000625 INF: FPGA: Recv ZSGSRD 30334
17-03-18 04:44:01.914 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.914 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.914 -07 000000501 INF: FPGA: Recv ZSGSRD 30331
17-03-18 04:44:01.924 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.924 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.924 -07 000000447 INF: FPGA: Recv ZSGSRD 30340
17-03-18 04:44:01.934 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.934 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.934 -07 000000502 INF: FPGA: Recv ZSGSRD 30334
17-03-18 04:44:01.944 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.944 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:01.944 -07 000000501 INF: FPGA: Recv ZSGSRD 30338
17-03-18 04:44:01.954 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.954 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:01.954 -07 000000502 INF: FPGA: Recv ZPIEZORD 26079
17-03-18 04:44:01.964 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:01.964 -07 000000581 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -9.3 V.
17-03-18 04:44:01.964 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30335 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30336 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30329 (-134.4 uncal um), Max = 30340 (-134.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:44:01.964 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30335, posNoise = 5, negNoise = 6
17-03-18 04:44:01.964 -07 000000581 INF: Z Motor: After move to -0.135184, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:01.964 -07 000000581 INF: Z Motor: Settle wait time = 1467 ms, measure time = 105 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:44:01.964 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:44:02.014 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:44:02.014 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:44:02.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:02.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:02.014 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:02.014 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:02.014 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:44:02.014 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:02.014 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:44:02.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:44:02.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:44:02.024 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:44:02.034 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:44:02.034 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:44:02.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:44:02.074 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:44:02.374 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:44:02.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:44:02.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:44:02.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:44:02.414 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:44:02.414 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:44:02.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:44:02.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:44:02.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:02.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:44:02.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:44:02.514 -07 000000447 INF: Autofocus start
17-03-18 04:44:02.514 -07 000000447 INF: MeasureProfile start
17-03-18 04:44:02.514 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:02.514 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:02.524 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:02.524 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:44:02.524 -07 000000447 INF: MeasureProfile done
17-03-18 04:44:02.524 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:44:02.524 -07 000000447 INF: Autofocus finished
17-03-18 04:44:02.724 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:44:02.724 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:44:02.724 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135201827331454. ----------
17-03-18 04:44:02.724 -07 000000610 INF: Cycle	128	Tile	14	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:44:02.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28039, sync = True, waitForSettling = True)
17-03-18 04:44:02.734 -07 000000610 INF: Z Motor: Moving to -0.128354 mm, started at -0.135202 mm, distance = 6.85 um
17-03-18 04:44:02.734 -07 000000610 INF: FPGA: Xmit ZDACW 28039\n [Z Motor]
17-03-18 04:44:02.734 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:44:02.744 -07 000000610 INF: FPGA: 'ZDACW 28039' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:44:02.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:02.744 -07 000000382 INF: FPGA: Recv ZDACR 28039
17-03-18 04:44:02.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:44:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29273
17-03-18 04:44:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:02.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.914 -07 000000447 INF: FPGA: Recv ZSGSRD 29269
17-03-18 04:44:02.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29274
17-03-18 04:44:02.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.934 -07 000000581 INF: FPGA: Recv ZSGSRD 29265
17-03-18 04:44:02.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.944 -07 000000447 INF: FPGA: Recv ZSGSRD 29273
17-03-18 04:44:02.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29272
17-03-18 04:44:02.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.964 -07 000000382 INF: FPGA: Recv ZSGSRD 29274
17-03-18 04:44:02.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.974 -07 000000606 INF: FPGA: Recv ZSGSRD 29274
17-03-18 04:44:02.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.984 -07 000000618 INF: FPGA: Recv ZSGSRD 29270
17-03-18 04:44:02.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:02.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:02.994 -07 000000626 INF: FPGA: Recv ZSGSRD 29270
17-03-18 04:44:03.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:03.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:03.004 -07 000000606 INF: FPGA: Recv ZPIEZORD 24665
17-03-18 04:44:03.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:03.014 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -10.1 V.
17-03-18 04:44:03.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29271 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29272 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29265 (-127.6 uncal um), Max = 29274 (-127.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:44:03.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29271, posNoise = 3, negNoise = 6
17-03-18 04:44:03.014 -07 000000610 INF: Z Motor: After move to -0.128354, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:03.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:44:03.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:03.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:03.014 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:03.014 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:03.014 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:44:03.014 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:44:03.014 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:03.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:44:03.014 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:03.014 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:44:03.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:44:03.014 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:44:03.024 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:03.024 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:44:03.024 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:44:03.024 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:44:03.034 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:44:03.034 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:44:03.034 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:44:03.034 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:44:03.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28215 150\n [Camera]
17-03-18 04:44:03.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:44:03.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:44:03.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:44:03.664 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:03.664 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:03.664 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:44:03.664 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:44:03.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:44:03.664 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:03.664 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:03.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:44:03.854 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28215 810
17-03-18 04:44:04.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:04.064 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:44:04.064 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:44:04.064 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:04.064 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:04.064 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:44:04.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:44:04.064 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:44:04.064 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:04.064 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:44:04.074 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:44:04.194 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.024884,
17-03-18 04:44:04.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:44:04.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:44:04.204 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:04.204 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:04.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 04:44:04.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:44:04.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:44:04.214 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:04.214 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:04.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:44:04.394 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:44:04.404 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:04.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28215 150' command took 2 ms to send, 1360 ms to get response, and 1365 ms overall
17-03-18 04:44:04.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:44:04.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.12836646561262. ------
17-03-18 04:44:04.404 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:04.404 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13504 mm
17-03-18 04:44:04.404 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:44:04.404 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:44:04.404 -07 000000618 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 04:44:04.414 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29500, sync = True, waitForSettling = False)
17-03-18 04:44:04.414 -07 000000382 INF: Z Motor: Moving to -0.135042 mm, started at -0.128366 mm, distance = -6.68 um
17-03-18 04:44:04.414 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:04.414 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:44:04.414 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:04.414 -07 000000581 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:44:04.424 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:04.424 -07 000000618 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:04.424 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:44:04.424 -07 000000618 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:44:04.424 -07 000000618 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:44:04.434 -07 000000382 INF: FPGA: Xmit ZDACW 29500\n [Z Motor]
17-03-18 04:44:04.434 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:44:04.444 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:44:04.444 -07 000000382 INF: FPGA: 'ZDACW 29500' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:44:04.454 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:04.454 -07 000000502 INF: FPGA: Recv ZDACR 29500
17-03-18 04:44:04.464 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:44:04.464 -07 000000382 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:44:04.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:44:04.594 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:44:04.594 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:04.604 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:44:04.604 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:44:04.604 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:04.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:04.604 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:44:04.604 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:44:04.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:44:04.624 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:44:04.624 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 04:44:04.814 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:44:04.814 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:44:04.864 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:04.874 -07 000000606 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:44:04.874 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:44:04.874 -07 000000618 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:04.874 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:44:04.874 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 04:44:05.824 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:05.824 -07 000000382 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:44:05.834 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.834 -07 000000618 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:05.864 -07 000000618 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:05.864 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:05.864 -07 000000618 INF: Y Motor: Moved to 71.5181 after 1451 ms (table move)
17-03-18 04:44:05.864 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135042 mm (DAC = 29500)
17-03-18 04:44:05.864 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:44:05.874 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:44:05.874 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.874 -07 000000447 INF: FPGA: Recv ZSGSRD 30319
17-03-18 04:44:05.884 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.884 -07 000000424 INF: FPGA: Recv ZSGSRD 30314
17-03-18 04:44:05.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.894 -07 000000606 INF: FPGA: Recv ZSGSRD 30309
17-03-18 04:44:05.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30308
17-03-18 04:44:05.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.914 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.914 -07 000000581 INF: FPGA: Recv ZSGSRD 30310
17-03-18 04:44:05.924 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.924 -07 000000502 INF: FPGA: Recv ZSGSRD 30313
17-03-18 04:44:05.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.934 -07 000000480 INF: FPGA: Recv ZSGSRD 30303
17-03-18 04:44:05.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.944 -07 000000447 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:44:05.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:05.954 -07 000000581 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:44:05.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.964 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:05.964 -07 000000512 INF: FPGA: Recv ZPIEZORD 26081
17-03-18 04:44:05.974 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:05.974 -07 000000474 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-18 04:44:05.974 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30312 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30312 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30303 (-134.2 uncal um), Max = 30319 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:44:05.974 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30312, posNoise = 7, negNoise = 9
17-03-18 04:44:05.974 -07 000000474 INF: Z Motor: After move to -0.135042, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:05.974 -07 000000474 INF: Z Motor: Settle wait time = 1455 ms, measure time = 105 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:44:05.974 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:44:06.024 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:44:06.024 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:44:06.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:06.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:06.024 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:06.024 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:06.024 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:44:06.024 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:06.024 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:06.024 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:44:06.034 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:44:06.034 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:44:06.034 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:44:06.034 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:44:06.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:44:06.094 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:44:06.384 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:44:06.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:44:06.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:44:06.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 04:44:06.424 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:44:06.424 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:44:06.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:44:06.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:44:06.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:06.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:44:06.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:44:06.524 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:06.524 -07 000000480 INF: Autofocus start
17-03-18 04:44:06.524 -07 000000480 INF: MeasureProfile start
17-03-18 04:44:06.524 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:06.534 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:06.534 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:44:06.544 -07 000000480 INF: MeasureProfile done
17-03-18 04:44:06.544 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:44:06.544 -07 000000480 INF: Autofocus finished
17-03-18 04:44:06.694 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:06.734 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:44:06.734 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:44:06.734 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135054070452193. ----------
17-03-18 04:44:06.734 -07 000000610 INF: Cycle	128	Tile	15	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:44:06.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28024, sync = True, waitForSettling = True)
17-03-18 04:44:06.744 -07 000000610 INF: Z Motor: Moving to -0.128286 mm, started at -0.135054 mm, distance = 6.77 um
17-03-18 04:44:06.744 -07 000000610 INF: FPGA: Xmit ZDACW 28024\n [Z Motor]
17-03-18 04:44:06.744 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:44:06.754 -07 000000610 INF: FPGA: 'ZDACW 28024' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:06.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:06.754 -07 000000569 INF: FPGA: Recv ZDACR 28024
17-03-18 04:44:06.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:44:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.914 -07 000000581 INF: FPGA: Recv ZSGSRD 29256
17-03-18 04:44:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29261
17-03-18 04:44:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.934 -07 000000382 INF: FPGA: Recv ZSGSRD 29264
17-03-18 04:44:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.944 -07 000000467 INF: FPGA: Recv ZSGSRD 29262
17-03-18 04:44:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.954 -07 000000569 INF: FPGA: Recv ZSGSRD 29258
17-03-18 04:44:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.964 -07 000000502 INF: FPGA: Recv ZSGSRD 29260
17-03-18 04:44:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.974 -07 000000382 INF: FPGA: Recv ZSGSRD 29259
17-03-18 04:44:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.984 -07 000000467 INF: FPGA: Recv ZSGSRD 29258
17-03-18 04:44:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:06.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:06.994 -07 000000569 INF: FPGA: Recv ZSGSRD 29261
17-03-18 04:44:07.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:07.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:07.004 -07 000000618 INF: FPGA: Recv ZSGSRD 29264
17-03-18 04:44:07.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:07.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:07.014 -07 000000502 INF: FPGA: Recv ZPIEZORD 24695
17-03-18 04:44:07.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:07.024 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -10.0 V.
17-03-18 04:44:07.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29256 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:44:07.024 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 4, negNoise = 4
17-03-18 04:44:07.024 -07 000000610 INF: Z Motor: After move to -0.128286, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:07.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:44:07.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:07.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:07.024 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:07.024 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:44:07.024 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:07.024 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:07.024 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:44:07.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:44:07.024 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:44:07.024 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:44:07.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:44:07.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:44:07.034 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:07.034 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:44:07.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:44:07.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:44:07.044 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:44:07.044 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:44:07.044 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:44:07.044 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:44:07.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28201 150\n [Camera]
17-03-18 04:44:07.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:44:07.674 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:44:07.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:44:07.674 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:07.674 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:07.674 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:44:07.674 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:44:07.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:44:07.674 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:07.674 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:07.674 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:44:07.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28201 810
17-03-18 04:44:08.014 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:08.054 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:44:08.054 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:44:08.054 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:08.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:44:08.064 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:44:08.064 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:08.064 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:44:08.064 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:08.064 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:44:08.074 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:44:08.214 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:44:08.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:44:08.214 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:08.214 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:08.214 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:44:08.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:44:08.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:44:08.224 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:08.364 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:08.364 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:44:08.404 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:44:08.404 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:08.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28201 150' command took 2 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-18 04:44:08.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:44:08.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128295799279061. ------
17-03-18 04:44:08.414 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:08.414 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13468 mm
17-03-18 04:44:08.414 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:44:08.414 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:44:08.414 -07 000000625 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 04:44:08.414 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29422, sync = True, waitForSettling = False)
17-03-18 04:44:08.414 -07 000000581 INF: Z Motor: Moving to -0.134685 mm, started at -0.128296 mm, distance = -6.39 um
17-03-18 04:44:08.414 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:08.424 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:08.424 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:44:08.424 -07 000000474 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:44:08.434 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:44:08.434 -07 000000625 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:08.434 -07 000000625 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:44:08.434 -07 000000625 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:44:08.434 -07 000000581 INF: FPGA: Xmit ZDACW 29422\n [Z Motor]
17-03-18 04:44:08.434 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:44:08.444 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:44:08.444 -07 000000581 INF: FPGA: 'ZDACW 29422' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:44:08.454 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:44:08.464 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:08.464 -07 000000606 INF: FPGA: Recv ZDACR 29422
17-03-18 04:44:08.474 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:44:08.474 -07 000000581 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:44:08.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 411 ms.
17-03-18 04:44:08.634 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:44:08.634 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:08.634 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:44:08.634 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 04:44:08.644 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:44:08.644 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:44:08.754 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:44:08.754 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:44:08.754 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:08.754 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:44:08.764 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 544 ms.
17-03-18 04:44:08.824 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:44:08.824 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:44:08.874 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:08.884 -07 000000569 INF: FPGA: Recv YRDPOS 148170
17-03-18 04:44:08.884 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:44:08.884 -07 000000625 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:08.884 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:44:08.884 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 04:44:09.554 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.999021,
17-03-18 04:44:09.834 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:09.834 -07 000000606 INF: FPGA: Recv YRDPOS 148170
17-03-18 04:44:09.844 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:09.844 -07 000000625 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:09.874 -07 000000625 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:09.874 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:09.874 -07 000000625 INF: Y Motor: Moved to 72.3486 after 1454 ms (table move)
17-03-18 04:44:09.874 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134685 mm (DAC = 29422)
17-03-18 04:44:09.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.874 -07 000000447 INF: FPGA: Recv ZSGSRD 30264
17-03-18 04:44:09.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:09.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.884 -07 000000502 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:44:09.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.894 -07 000000424 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:44:09.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.904 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.904 -07 000000626 INF: FPGA: Recv ZSGSRD 30246
17-03-18 04:44:09.914 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30261
17-03-18 04:44:09.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.924 -07 000000625 INF: FPGA: Recv ZSGSRD 30259
17-03-18 04:44:09.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.934 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.934 -07 000000480 INF: FPGA: Recv ZSGSRD 30253
17-03-18 04:44:09.944 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.944 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.944 -07 000000501 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:44:09.954 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.954 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.954 -07 000000569 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:44:09.964 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.964 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:09.964 -07 000000512 INF: FPGA: Recv ZSGSRD 30262
17-03-18 04:44:09.974 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.974 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:09.974 -07 000000581 INF: FPGA: Recv ZPIEZORD 26039
17-03-18 04:44:09.984 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:09.984 -07 000000467 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.3 V.
17-03-18 04:44:09.984 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30257 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30256 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30246 (-133.8 uncal um), Max = 30264 (-134.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:44:09.984 -07 000000467 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30257, posNoise = 7, negNoise = 11
17-03-18 04:44:09.984 -07 000000467 INF: Z Motor: After move to -0.134685, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:09.984 -07 000000467 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:44:09.984 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:44:10.034 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:44:10.034 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:44:10.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:10.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:10.034 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:10.034 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:10.034 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:44:10.034 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:10.034 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:44:10.034 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:44:10.044 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:44:10.044 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:44:10.044 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:44:10.044 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:44:10.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:44:10.094 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:44:10.394 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:44:10.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:44:10.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:44:10.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 04:44:10.434 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:44:10.434 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:44:10.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:44:10.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:44:10.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:10.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:44:10.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:44:10.534 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:10.534 -07 000000382 INF: Autofocus start
17-03-18 04:44:10.534 -07 000000382 INF: MeasureProfile start
17-03-18 04:44:10.534 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:10.544 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:44:10.544 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:44:10.544 -07 000000382 INF: MeasureProfile done
17-03-18 04:44:10.544 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:44:10.544 -07 000000382 INF: Autofocus finished
17-03-18 04:44:10.744 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:44:10.744 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:44:10.744 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.134700738784396. ----------
17-03-18 04:44:10.744 -07 000000610 INF: Cycle	128	Tile	16	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:44:10.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27946, sync = True, waitForSettling = True)
17-03-18 04:44:10.754 -07 000000610 INF: Z Motor: Moving to -0.127929 mm, started at -0.134701 mm, distance = 6.77 um
17-03-18 04:44:10.754 -07 000000610 INF: FPGA: Xmit ZDACW 27946\n [Z Motor]
17-03-18 04:44:10.754 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:44:10.764 -07 000000610 INF: FPGA: 'ZDACW 27946' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:10.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:10.764 -07 000000606 INF: FPGA: Recv ZDACR 27946
17-03-18 04:44:10.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:44:10.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:44:10.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.934 -07 000000382 INF: FPGA: Recv ZSGSRD 29201
17-03-18 04:44:10.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.944 -07 000000618 INF: FPGA: Recv ZSGSRD 29198
17-03-18 04:44:10.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.954 -07 000000447 INF: FPGA: Recv ZSGSRD 29197
17-03-18 04:44:10.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.964 -07 000000424 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:44:10.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.974 -07 000000382 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:44:10.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29201
17-03-18 04:44:10.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:10.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:10.994 -07 000000606 INF: FPGA: Recv ZSGSRD 29206
17-03-18 04:44:11.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:11.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:11.004 -07 000000424 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:44:11.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:11.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:11.014 -07 000000625 INF: FPGA: Recv ZSGSRD 29204
17-03-18 04:44:11.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:11.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:11.024 -07 000000606 INF: FPGA: Recv ZPIEZORD 24644
17-03-18 04:44:11.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:11.034 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -10.0 V.
17-03-18 04:44:11.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29203 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29203 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29197 (-127.1 uncal um), Max = 29211 (-127.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:44:11.034 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29203, posNoise = 8, negNoise = 6
17-03-18 04:44:11.034 -07 000000610 INF: Z Motor: After move to -0.127929, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:11.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:44:11.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:11.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:11.034 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:11.034 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:11.034 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:44:11.034 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:44:11.034 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:44:11.034 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:11.034 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:44:11.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:44:11.034 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:11.034 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:44:11.044 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:44:11.044 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:44:11.044 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:11.044 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:44:11.044 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:44:11.044 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:44:11.054 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:44:11.054 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:44:11.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28122 150\n [Camera]
17-03-18 04:44:11.254 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:44:11.674 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:44:11.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:44:11.674 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:11.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:44:11.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:44:11.684 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:11.694 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:11.694 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:44:11.694 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:11.694 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:44:11.694 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:11.874 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28122 810
17-03-18 04:44:12.024 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:12.084 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:44:12.084 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:44:12.084 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:12.084 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:12.084 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:44:12.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:44:12.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:44:12.084 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:12.094 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:12.094 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:44:12.224 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:44:12.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:44:12.224 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:12.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:44:12.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:44:12.224 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:12.344 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:12.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 04:44:12.354 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:12.354 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:44:12.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:44:12.414 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:12.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28122 150' command took 2 ms to send, 1357 ms to get response, and 1364 ms overall
17-03-18 04:44:12.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:44:12.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.12792961918698. ------
17-03-18 04:44:12.424 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:12.424 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13443 mm
17-03-18 04:44:12.424 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:44:12.424 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:44:12.424 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 04:44:12.424 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29366, sync = True, waitForSettling = False)
17-03-18 04:44:12.424 -07 000000625 INF: Z Motor: Moving to -0.134429 mm, started at -0.127930 mm, distance = -6.50 um
17-03-18 04:44:12.424 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:12.434 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:44:12.434 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:12.434 -07 000000447 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:44:12.444 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:44:12.444 -07 000000382 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:12.444 -07 000000625 INF: FPGA: Xmit ZDACW 29366\n [Z Motor]
17-03-18 04:44:12.444 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:44:12.444 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:44:12.444 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:44:12.454 -07 000000625 INF: FPGA: 'ZDACW 29366' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:44:12.454 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:44:12.464 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:44:12.474 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:12.474 -07 000000467 INF: FPGA: Recv ZDACR 29366
17-03-18 04:44:12.484 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:44:12.484 -07 000000625 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:44:12.654 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:44:12.654 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:44:12.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:44:12.744 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:44:12.744 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:12.744 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:44:12.744 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:44:12.744 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:12.754 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:12.754 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 04:44:12.754 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:12.764 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 04:44:12.834 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:44:12.834 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:44:12.884 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:12.894 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:44:12.894 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:44:12.894 -07 000000382 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:12.894 -07 000000382 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:44:12.894 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-18 04:44:13.844 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:13.844 -07 000000480 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:44:13.854 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:13.854 -07 000000382 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:13.884 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:13.884 -07 000000382 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:13.884 -07 000000382 INF: Y Motor: Moved to 73.1753 after 1453 ms (table move)
17-03-18 04:44:13.884 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134429 mm (DAC = 29366)
17-03-18 04:44:13.884 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.884 -07 000000625 INF: FPGA: Recv ZSGSRD 30219
17-03-18 04:44:13.894 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:44:13.894 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.894 -07 000000569 INF: FPGA: Recv ZSGSRD 30212
17-03-18 04:44:13.904 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.904 -07 000000467 INF: FPGA: Recv ZSGSRD 30218
17-03-18 04:44:13.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.914 -07 000000606 INF: FPGA: Recv ZSGSRD 30215
17-03-18 04:44:13.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30220
17-03-18 04:44:13.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.934 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.934 -07 000000569 INF: FPGA: Recv ZSGSRD 30214
17-03-18 04:44:13.944 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.944 -07 000000581 INF: FPGA: Recv ZSGSRD 30220
17-03-18 04:44:13.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.954 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.954 -07 000000606 INF: FPGA: Recv ZSGSRD 30218
17-03-18 04:44:13.964 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.964 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.964 -07 000000447 INF: FPGA: Recv ZSGSRD 30214
17-03-18 04:44:13.974 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.974 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:13.974 -07 000000512 INF: FPGA: Recv ZSGSRD 30216
17-03-18 04:44:13.984 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.984 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:13.984 -07 000000626 INF: FPGA: Recv ZPIEZORD 25951
17-03-18 04:44:13.994 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:13.994 -07 000000618 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -9.4 V.
17-03-18 04:44:13.994 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30217 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30217 (-133.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30212 (-133.6 uncal um), Max = 30220 (-133.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:44:13.994 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30217, posNoise = 3, negNoise = 5
17-03-18 04:44:13.994 -07 000000618 INF: Z Motor: After move to -0.134429, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:13.994 -07 000000618 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:44:13.994 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:44:14.044 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:44:14.044 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:44:14.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:14.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:14.044 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:14.044 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:14.044 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:44:14.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:14.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:14.044 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:44:14.054 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:44:14.054 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:44:14.064 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:44:14.064 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:44:14.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:44:14.114 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:44:14.414 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:44:14.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:44:14.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:44:14.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) start.
17-03-18 04:44:14.454 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:44:14.454 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:44:14.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 04:44:14.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592957328, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:44:14.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:14.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:44:14.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:44:14.554 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:14.554 -07 000000606 INF: Autofocus start
17-03-18 04:44:14.554 -07 000000606 INF: MeasureProfile start
17-03-18 04:44:14.554 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:14.564 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:14.564 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:44:14.564 -07 000000606 INF: MeasureProfile done
17-03-18 04:44:14.564 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:44:14.564 -07 000000606 INF: Autofocus finished
17-03-18 04:44:14.764 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:44:14.764 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:44:14.764 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134443770298726. ----------
17-03-18 04:44:14.764 -07 000000610 INF: Cycle	128	Tile	17	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:44:14.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27890, sync = True, waitForSettling = True)
17-03-18 04:44:14.774 -07 000000610 INF: Z Motor: Moving to -0.127672 mm, started at -0.134444 mm, distance = 6.77 um
17-03-18 04:44:14.774 -07 000000610 INF: FPGA: Xmit ZDACW 27890\n [Z Motor]
17-03-18 04:44:14.774 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:44:14.784 -07 000000610 INF: FPGA: 'ZDACW 27890' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:14.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:14.784 -07 000000447 INF: FPGA: Recv ZDACR 27890
17-03-18 04:44:14.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:14.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:44:14.924 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 4.004458,
17-03-18 04:44:14.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:14.944 -07 000000424 INF: FPGA: Recv ZSGSRD 29160
17-03-18 04:44:14.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:14.974 -07 000000581 INF: FPGA: Recv ZSGSRD 29162
17-03-18 04:44:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:44:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:14.984 -07 000000474 INF: FPGA: Recv ZSGSRD 29161
17-03-18 04:44:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:14.994 -07 000000424 INF: FPGA: Recv ZSGSRD 29164
17-03-18 04:44:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:15.004 -07 000000569 INF: FPGA: Recv ZSGSRD 29168
17-03-18 04:44:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:15.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:15.014 -07 000000625 INF: FPGA: Recv ZSGSRD 29160
17-03-18 04:44:15.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:15.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:15.024 -07 000000581 INF: FPGA: Recv ZSGSRD 29163
17-03-18 04:44:15.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:15.034 -07 000000512 INF: FPGA: Recv ZSGSRD 29162
17-03-18 04:44:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:15.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:15.044 -07 000000569 INF: FPGA: Recv ZSGSRD 29161
17-03-18 04:44:15.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:15.054 -07 000000625 INF: FPGA: Recv ZSGSRD 29167
17-03-18 04:44:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:15.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:15.064 -07 000000474 INF: FPGA: Recv ZPIEZORD 24579
17-03-18 04:44:15.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:15.074 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.256 V. Piezo Error = -10.1 V.
17-03-18 04:44:15.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29160 (-126.9 uncal um), Max = 29168 (-126.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:44:15.074 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 5, negNoise = 3
17-03-18 04:44:15.074 -07 000000610 INF: Z Motor: After move to -0.127672, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:15.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-18 04:44:15.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:15.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:15.074 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:15.074 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:15.074 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:44:15.074 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:15.074 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:44:15.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:44:15.074 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:15.074 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:44:15.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:44:15.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:44:15.084 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:15.084 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:44:15.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:44:15.084 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:44:15.094 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:44:15.094 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:44:15.094 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:44:15.094 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:44:15.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28067 150\n [Camera]
17-03-18 04:44:15.294 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:44:15.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:44:15.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:44:15.724 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:15.724 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:44:15.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:44:15.724 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:15.724 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:15.724 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:44:15.724 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:15.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:44:15.914 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28067 810
17-03-18 04:44:16.064 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:16.114 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:44:16.114 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:44:16.114 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:16.114 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:44:16.114 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:44:16.114 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:16.114 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:44:16.114 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:44:16.114 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:44:16.124 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:44:16.264 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:44:16.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:44:16.264 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:16.274 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:44:16.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:44:16.274 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:16.274 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:44:16.274 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:16.274 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:16.274 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:44:16.454 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-18 04:44:16.454 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:16.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28067 150' command took 2 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-18 04:44:16.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:44:16.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.12767265070131. ------
17-03-18 04:44:16.464 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13347 mm
17-03-18 04:44:16.464 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:44:16.464 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:16.464 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:16.464 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:44:16.464 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 04:44:16.464 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29156, sync = True, waitForSettling = False)
17-03-18 04:44:16.464 -07 000000447 INF: Z Motor: Moving to -0.133468 mm, started at -0.127673 mm, distance = -5.79 um
17-03-18 04:44:16.474 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:44:16.474 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:16.474 -07 000000467 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:44:16.484 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:44:16.484 -07 000000447 INF: FPGA: Xmit ZDACW 29156\n [Z Motor]
17-03-18 04:44:16.484 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:16.484 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:44:16.484 -07 000000424 INF: Y Motor: Moving 1356 steps-35
17-03-18 04:44:16.484 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:44:16.494 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:44:16.494 -07 000000447 INF: FPGA: 'ZDACW 29156' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:44:16.504 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:44:16.514 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:16.514 -07 000000581 INF: FPGA: Recv ZDACR 29156
17-03-18 04:44:16.524 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:44:16.524 -07 000000447 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:44:16.644 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:44:16.644 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:44:16.644 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:16.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:44:16.654 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:44:16.654 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:16.654 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:16.654 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:16.654 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:44:16.664 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:44:16.694 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:44:16.694 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:44:16.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:16.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:16.874 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:44:16.874 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:44:16.914 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:16.924 -07 000000625 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:44:16.924 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:44:16.924 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:16.924 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:44:16.924 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.134 mm/sec
17-03-18 04:44:17.874 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:17.874 -07 000000474 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:44:17.884 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:17.884 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:17.904 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:17.904 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:17.904 -07 000000424 INF: Y Motor: Moved to 74.0073 after 1434 ms (table move)
17-03-18 04:44:17.904 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133468 mm (DAC = 29156)
17-03-18 04:44:17.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.914 -07 000000447 INF: FPGA: Recv ZSGSRD 30066
17-03-18 04:44:17.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:17.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.914 -07 000000501 INF: FPGA: Recv ZSGSRD 30069
17-03-18 04:44:17.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.924 -07 000000467 INF: FPGA: Recv ZSGSRD 30066
17-03-18 04:44:17.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.934 -07 000000502 INF: FPGA: Recv ZSGSRD 30064
17-03-18 04:44:17.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.944 -07 000000447 INF: FPGA: Recv ZSGSRD 30066
17-03-18 04:44:17.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30063
17-03-18 04:44:17.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.964 -07 000000625 INF: FPGA: Recv ZSGSRD 30065
17-03-18 04:44:17.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.974 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.974 -07 000000618 INF: FPGA: Recv ZSGSRD 30061
17-03-18 04:44:17.984 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.984 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.984 -07 000000447 INF: FPGA: Recv ZSGSRD 30071
17-03-18 04:44:17.994 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:17.994 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:17.994 -07 000000474 INF: FPGA: Recv ZSGSRD 30071
17-03-18 04:44:18.004 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:18.004 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:18.004 -07 000000569 INF: FPGA: Recv ZPIEZORD 25786
17-03-18 04:44:18.014 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:18.014 -07 000000606 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.449 V. Piezo Error = -9.4 V.
17-03-18 04:44:18.014 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30066 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30066 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30061 (-132.7 uncal um), Max = 30071 (-132.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:44:18.014 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30066, posNoise = 5, negNoise = 5
17-03-18 04:44:18.014 -07 000000606 INF: Z Motor: After move to -0.133468, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:18.014 -07 000000606 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-18 04:44:18.014 -07 000000606 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:44:18.064 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 04:44:18.064 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:44:18.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:18.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:18.064 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:18.064 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:18.064 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:44:18.064 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:18.074 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:18.074 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:44:18.074 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:44:18.074 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:44:18.084 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:44:18.084 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:44:18.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:44:18.134 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:44:18.434 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:44:18.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:44:18.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:44:18.554 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:44:18.554 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:44:18.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 453 ms to get response, and 464 ms overall
17-03-18 04:44:18.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:44:18.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 04:44:18.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:18.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:44:18.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 249 ms.
17-03-18 04:44:18.754 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:18.764 -07 000000474 INF: Autofocus start
17-03-18 04:44:18.764 -07 000000474 INF: MeasureProfile start
17-03-18 04:44:18.764 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:18.774 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:18.774 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:44:18.774 -07 000000474 INF: MeasureProfile done
17-03-18 04:44:18.774 -07 000000474 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:44:18.774 -07 000000474 INF: Autofocus finished
17-03-18 04:44:18.974 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:44:18.974 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:44:18.974 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.13347371426532. ----------
17-03-18 04:44:18.974 -07 000000610 INF: Cycle	128	Tile	18	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:44:18.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27697, sync = True, waitForSettling = True)
17-03-18 04:44:18.984 -07 000000610 INF: Z Motor: Moving to -0.126789 mm, started at -0.133474 mm, distance = 6.68 um
17-03-18 04:44:18.984 -07 000000610 INF: FPGA: Xmit ZDACW 27697\n [Z Motor]
17-03-18 04:44:18.984 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:44:18.994 -07 000000610 INF: FPGA: 'ZDACW 27697' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:18.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:18.994 -07 000000606 INF: FPGA: Recv ZDACR 27697
17-03-18 04:44:19.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:44:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.154 -07 000000625 INF: FPGA: Recv ZSGSRD 29027
17-03-18 04:44:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29024
17-03-18 04:44:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29024
17-03-18 04:44:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.184 -07 000000512 INF: FPGA: Recv ZSGSRD 29025
17-03-18 04:44:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.194 -07 000000382 INF: FPGA: Recv ZSGSRD 29024
17-03-18 04:44:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.204 -07 000000502 INF: FPGA: Recv ZSGSRD 29033
17-03-18 04:44:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.214 -07 000000467 INF: FPGA: Recv ZSGSRD 29022
17-03-18 04:44:19.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29028
17-03-18 04:44:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.234 -07 000000569 INF: FPGA: Recv ZSGSRD 29023
17-03-18 04:44:19.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:19.244 -07 000000581 INF: FPGA: Recv ZSGSRD 29027
17-03-18 04:44:19.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:19.254 -07 000000625 INF: FPGA: Recv ZPIEZORD 24466
17-03-18 04:44:19.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:19.264 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.226 V. Piezo Error = -10.0 V.
17-03-18 04:44:19.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29026 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29024 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29022 (-126.0 uncal um), Max = 29033 (-126.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:44:19.264 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29026, posNoise = 7, negNoise = 4
17-03-18 04:44:19.264 -07 000000610 INF: Z Motor: After move to -0.126789, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:19.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:44:19.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:19.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:19.264 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:19.264 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:44:19.264 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:19.264 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:19.264 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:19.264 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:44:19.264 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:44:19.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:44:19.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:44:19.264 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:44:19.274 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:19.274 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:44:19.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:44:19.274 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:44:19.274 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:44:19.274 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:44:19.284 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:44:19.284 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:44:19.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 27874 150\n [Camera]
17-03-18 04:44:19.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:44:19.914 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:44:19.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:44:19.914 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:19.914 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:44:19.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:44:19.914 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:19.924 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:19.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:44:19.924 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:19.924 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:44:20.104 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27874 810
17-03-18 04:44:20.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:20.294 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.985358,
17-03-18 04:44:20.294 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:44:20.294 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:44:20.294 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:20.304 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:44:20.304 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:44:20.304 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:20.304 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:20.304 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:20.304 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:44:20.304 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:44:20.454 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:44:20.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:44:20.454 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:20.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:44:20.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:44:20.464 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:20.464 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:44:20.464 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:20.464 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:20.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:44:20.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:44:20.654 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:20.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 27874 150' command took 2 ms to send, 1361 ms to get response, and 1367 ms overall
17-03-18 04:44:20.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:44:20.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.126792533637889. ------
17-03-18 04:44:20.774 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:20.774 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13319 mm
17-03-18 04:44:20.774 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:44:20.774 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:44:20.774 -07 000000474 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 04:44:20.774 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29096, sync = True, waitForSettling = False)
17-03-18 04:44:20.774 -07 000000501 INF: Z Motor: Moving to -0.133193 mm, started at -0.126793 mm, distance = -6.40 um
17-03-18 04:44:20.774 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:20.784 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:44:20.784 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:20.784 -07 000000625 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:44:20.794 -07 000000501 INF: FPGA: Xmit ZDACW 29096\n [Z Motor]
17-03-18 04:44:20.794 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:44:20.794 -07 000000474 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:20.794 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:44:20.794 -07 000000474 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:44:20.794 -07 000000474 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:44:20.804 -07 000000501 INF: FPGA: 'ZDACW 29096' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:44:20.804 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:44:20.814 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:44:20.824 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:20.824 -07 000000625 INF: FPGA: Recv ZDACR 29096
17-03-18 04:44:20.834 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:44:20.834 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 04:44:20.854 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:44:20.854 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:44:20.854 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:20.854 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:44:20.854 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:44:20.854 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:20.854 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:20.854 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:44:20.854 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:44:20.864 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:44:21.004 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:44:21.004 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:44:21.184 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:44:21.184 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:44:21.214 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:21.224 -07 000000502 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:44:21.224 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:44:21.224 -07 000000474 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:21.224 -07 000000474 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:44:21.224 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 04:44:21.694 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:21.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 127. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:22.174 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:22.174 -07 000000382 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:44:22.184 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:22.184 -07 000000474 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:22.204 -07 000000474 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:22.204 -07 000000474 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:22.204 -07 000000474 INF: Y Motor: Moved to 74.8311 after 1425 ms (table move)
17-03-18 04:44:22.204 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133193 mm (DAC = 29096)
17-03-18 04:44:22.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30021
17-03-18 04:44:22.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:44:22.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.214 -07 000000480 INF: FPGA: Recv ZSGSRD 30014
17-03-18 04:44:22.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.224 -07 000000467 INF: FPGA: Recv ZSGSRD 30022
17-03-18 04:44:22.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.234 -07 000000581 INF: FPGA: Recv ZSGSRD 30015
17-03-18 04:44:22.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.244 -07 000000382 INF: FPGA: Recv ZSGSRD 30025
17-03-18 04:44:22.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30026
17-03-18 04:44:22.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.264 -07 000000447 INF: FPGA: Recv ZSGSRD 30027
17-03-18 04:44:22.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:22.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.274 -07 000000474 INF: FPGA: Recv ZSGSRD 30026
17-03-18 04:44:22.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30021
17-03-18 04:44:22.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:22.294 -07 000000569 INF: FPGA: Recv ZSGSRD 30016
17-03-18 04:44:22.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.304 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:22.304 -07 000000424 INF: FPGA: Recv ZPIEZORD 25815
17-03-18 04:44:22.314 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:22.314 -07 000000512 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.3 V.
17-03-18 04:44:22.314 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30021 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30014 (-132.4 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:44:22.314 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30021, posNoise = 6, negNoise = 7
17-03-18 04:44:22.314 -07 000000512 INF: Z Motor: After move to -0.133193, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:22.314 -07 000000512 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-18 04:44:22.314 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:44:22.364 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 04:44:22.364 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:44:22.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:22.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:22.364 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:22.364 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:22.364 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:44:22.364 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:22.374 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:44:22.374 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:44:22.374 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:22.374 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:44:22.384 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:44:22.384 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:44:22.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:44:22.434 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:44:22.734 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:44:22.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:44:22.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:44:22.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 04:44:22.764 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:44:22.774 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:44:22.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:44:22.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:44:22.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:22.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:44:22.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:44:22.874 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:44:22.874 -07 000000569 INF: Autofocus start
17-03-18 04:44:22.874 -07 000000569 INF: MeasureProfile start
17-03-18 04:44:22.874 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:44:22.884 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:44:22.884 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:44:22.884 -07 000000569 INF: MeasureProfile done
17-03-18 04:44:22.884 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:44:22.884 -07 000000569 INF: Autofocus finished
17-03-18 04:44:23.084 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:44:23.084 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:44:23.084 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133184624718941. ----------
17-03-18 04:44:23.084 -07 000000610 INF: Cycle	128	Tile	19	Exposure Settings		A	425	G	204	T	204	C	425
17-03-18 04:44:23.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27620, sync = True, waitForSettling = True)
17-03-18 04:44:23.094 -07 000000610 INF: Z Motor: Moving to -0.126436 mm, started at -0.133185 mm, distance = 6.75 um
17-03-18 04:44:23.094 -07 000000610 INF: FPGA: Xmit ZDACW 27620\n [Z Motor]
17-03-18 04:44:23.094 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:44:23.104 -07 000000610 INF: FPGA: 'ZDACW 27620' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:23.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:44:23.104 -07 000000480 INF: FPGA: Recv ZDACR 27620
17-03-18 04:44:23.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:44:23.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.264 -07 000000467 INF: FPGA: Recv ZSGSRD 28967
17-03-18 04:44:23.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.274 -07 000000618 INF: FPGA: Recv ZSGSRD 28978
17-03-18 04:44:23.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.284 -07 000000447 INF: FPGA: Recv ZSGSRD 28974
17-03-18 04:44:23.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.294 -07 000000474 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:44:23.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.304 -07 000000424 INF: FPGA: Recv ZSGSRD 28979
17-03-18 04:44:23.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.314 -07 000000625 INF: FPGA: Recv ZSGSRD 28966
17-03-18 04:44:23.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.324 -07 000000447 INF: FPGA: Recv ZSGSRD 28976
17-03-18 04:44:23.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.334 -07 000000474 INF: FPGA: Recv ZSGSRD 28973
17-03-18 04:44:23.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.344 -07 000000569 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:44:23.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:44:23.354 -07 000000625 INF: FPGA: Recv ZSGSRD 28974
17-03-18 04:44:23.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:44:23.364 -07 000000581 INF: FPGA: Recv ZPIEZORD 24402
17-03-18 04:44:23.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:23.374 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.215 V. Piezo Error = -10.0 V.
17-03-18 04:44:23.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28972 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28974 (-125.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 28966 (-125.6 uncal um), Max = 28979 (-125.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:44:23.374 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28972, posNoise = 7, negNoise = 6
17-03-18 04:44:23.374 -07 000000610 INF: Z Motor: After move to -0.126436, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:44:23.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:44:23.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:44:23.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:44:23.374 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:44:23.374 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:44:23.374 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:44:23.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:44:23.374 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:44:23.374 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:44:23.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:44:23.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:44:23.374 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:44:23.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:44:23.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:44:23.374 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:44:23.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:44:23.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:44:23.384 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:44:23.384 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:44:23.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:44:23.394 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:44:23.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 27797 150\n [Camera]
17-03-18 04:44:23.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:44:24.024 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-18 04:44:24.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-18 04:44:24.024 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:24.024 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-18 04:44:24.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-18 04:44:24.024 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:24.024 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:24.024 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:44:24.024 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:24.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 04:44:24.214 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27797 810
17-03-18 04:44:24.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-18 04:44:24.424 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:44:24.424 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:44:24.424 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:24.424 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:44:24.424 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:44:24.424 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:24.424 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:24.424 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:44:24.434 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:24.434 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:44:24.564 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-18 04:44:24.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-18 04:44:24.564 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:44:24.564 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:44:24.564 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:44:24.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-18 04:44:24.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-18 04:44:24.574 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:44:24.574 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:44:24.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:44:24.754 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-18 04:44:24.754 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:44:24.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 27797 150' command took 2 ms to send, 1358 ms to get response, and 1363 ms overall
17-03-18 04:44:24.954 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:44:24.954 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:44:24.954 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:24.954 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:44:24.954 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:44:24.954 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:44:24.954 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:44:24.964 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:44:24.964 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:44:24.964 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:44:24.964 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:44:25.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:44:25.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:44:25.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:44:25.054 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 04:44:25.064 -07 000000610 INF: Imaging Cycle 128: ScanTilesCommand Cycle 128 time end. Duration was 173787 ms.
17-03-18 04:44:25.064 -07 000000610 INF: =================== Cycle #128 ===================
17-03-18 04:44:25.064 -07 000000610 INF: ===================  ===================
17-03-18 04:44:25.064 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:44:25.064 -07 000000606 INF: FPGA: Recv EXLED1ADCR 28
17-03-18 04:44:25.074 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:44:25.074 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-18 04:44:25.074 -07 000000626 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 128, FrontChillerTemperature: 3.985358, FrontChillerHeatSinkTemperature: 0.352465, AmbientTemperature: 18.66193, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.34615, GreenLEDSensorTemperature: 27.19769, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-18 04:44:25.164 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.