17-03-18 04:44:25.214 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:44:25.224 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:44:25.224 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 04:44:25.224 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:25.224 -07 000000467 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:44:25.234 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:44:25.234 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:25.234 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:44:25.234 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:44:25.234 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:44:25.354 -07 000000626 INF: FPGA: Recv YMVTO 154378 872
17-03-18 04:44:25.354 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 115 ms to get response, and 118 ms overall
17-03-18 04:44:25.354 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 04:44:25.354 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 04:44:25.354 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.550 mm, average velocity = 4.657 mm/sec
17-03-18 04:44:25.664 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.994908,
17-03-18 04:44:26.694 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:26.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:28.354 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:44:28.354 -07 000000606 INF: FPGA: Recv YRDPOS 154378
17-03-18 04:44:28.364 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:44:28.364 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:44:28.384 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:44:28.384 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:44:28.384 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3168 ms
17-03-18 04:44:28.394 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 60° ===================
17-03-18 04:44:28.394 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:44:28.394 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:44:28.394 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:44:28.404 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:44:28.404 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:44:28.404 -07 000000467 INF: FPGA: Recv TEC2EN 
17-03-18 04:44:28.414 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:44:28.414 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 60° ===================
17-03-18 04:44:28.414 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:44:28.414 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:44:28.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:44:28.444 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:44:28.444 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:44:28.444 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:44:28.744 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:44:28.764 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:44:28.764 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:44:28.814 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:44:28.834 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:44:28.834 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:44:28.934 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:44:28.934 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:44:28.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:28.964 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:44:28.964 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:44:28.964 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:44:29.094 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:44:29.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:31.034 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.003063,
17-03-18 04:44:31.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:31.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:32.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:32.294 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:32.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:32.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:33.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:33.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:33.194 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:44:33.194 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:44:33.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:33.354 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:44:33.354 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:44:33.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:33.514 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:44:33.514 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:44:33.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:44:33.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:44:33.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:34.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:34.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:34.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:44:34.134 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:44:35.354 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:44:35.354 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:44:35.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:44:35.374 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:44:35.374 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:44:35.374 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:44:35.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:44:35.524 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:44:35.524 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:44:35.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:44:35.594 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:44:35.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:44:35.694 -07 000000610 INF: =================== Cycle #129, Pumping Reagent CMS (4) ===================
17-03-18 04:44:35.694 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:44:35.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:35.724 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:44:35.724 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:44:35.724 -07 000000610 INF: =================== Cycle #129, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:44:35.854 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:44:35.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:36.414 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.026244,
17-03-18 04:44:36.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:36.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:37.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:37.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:37.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:37.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:37.814 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:44:37.814 -07 000000610 INF: =================== Cycle #129, Pumping Reagent CMS (4) ===================
17-03-18 04:44:37.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:37.974 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:44:37.974 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:44:38.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:38.134 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:44:38.134 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:44:38.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:44:38.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:44:38.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:38.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:38.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:38.754 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:44:38.754 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:44:39.974 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:44:39.974 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:44:39.974 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:44:39.994 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:44:39.994 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:44:39.994 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:44:40.144 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:44:40.164 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:44:40.164 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:44:40.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:44:40.234 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:44:40.234 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:44:40.334 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:44:40.334 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:44:40.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:40.364 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:44:40.364 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:44:40.364 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:44:40.494 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:44:40.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:41.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:41.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:41.434 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:44:41.434 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:44:41.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:41.594 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:44:41.594 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:44:41.694 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:41.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:41.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:41.754 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:44:41.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:44:41.754 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:44:41.774 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.004458,
17-03-18 04:44:41.884 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:44:41.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:42.344 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:42.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:42.374 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:44:42.374 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:44:42.374 -07 000000424 INF: WaitCommand(10000) start
17-03-18 04:44:42.374 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:44:42.374 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:44:43.594 -07 000000502 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:44:43.594 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-18 04:44:43.624 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:44:43.624 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:44:43.754 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:44:43.794 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:45.324 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:45.354 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:45.774 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:45.804 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:44:45.804 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:44:45.804 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:44:45.804 -07 000000502 INF: ===================  ===================
17-03-18 04:44:46.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:47.154 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.996267,
17-03-18 04:44:51.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:52.384 -07 000000424 INF: WaitCommand(10000) end
17-03-18 04:44:52.384 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:44:52.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:44:52.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:44:52.424 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:44:52.424 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:44:52.424 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:44:52.514 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.990831,
17-03-18 04:44:52.554 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:44:52.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:56.694 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:44:56.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1793, R2=1862, Total=3655. Warn if over 250 bubbles per interval.
17-03-18 04:44:57.894 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.004458,
17-03-18 04:44:58.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:58.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:59.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:59.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:44:59.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:44:59.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:00.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:00.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:00.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:00.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:00.554 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:45:00.554 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:45:00.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:00.724 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:45:00.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:45:00.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:00.884 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:45:00.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:45:00.884 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:45:01.014 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:45:01.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:01.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:01.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:01.504 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:45:01.504 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:45:01.694 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 5
17-03-18 04:45:01.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=5, R2=6, Total=11. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:02.724 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:45:02.724 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:45:02.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:45:02.744 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:45:02.744 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:45:02.744 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:45:02.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:45:02.974 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:45:02.974 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:45:03.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:45:03.044 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:45:03.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:45:03.144 -07 000000610 INF: =================== Cycle #129, Pumping Reagent IMT (1) ===================
17-03-18 04:45:03.144 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:45:03.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:03.174 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:45:03.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:45:03.174 -07 000000610 INF: =================== Cycle #129, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:45:03.254 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.015368,
17-03-18 04:45:03.304 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:45:03.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:04.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:04.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:05.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:05.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:05.264 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:45:05.264 -07 000000610 INF: =================== Cycle #129, Pumping Reagent IMT (1) ===================
17-03-18 04:45:05.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:05.424 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:45:05.424 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:45:05.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:05.584 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:45:05.584 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:45:05.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:45:05.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:45:05.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:06.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:06.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:06.204 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:45:06.204 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:45:06.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:06.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:07.424 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:45:07.424 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:45:07.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:45:07.444 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:45:07.444 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:45:07.444 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:45:07.674 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:45:07.694 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:45:07.694 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:45:07.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:45:07.764 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:45:07.764 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:45:07.864 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:45:07.864 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:45:07.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:07.894 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:45:07.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:45:07.894 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:45:08.024 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:45:08.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:08.624 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.009895,
17-03-18 04:45:08.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:08.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:08.964 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:45:08.964 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:45:09.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:09.124 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:45:09.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:45:09.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:09.284 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:45:09.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:45:09.284 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:45:09.414 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:45:09.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:09.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:09.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:09.904 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:45:09.904 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:45:09.904 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 65° ===================
17-03-18 04:45:09.904 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:45:09.904 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:45:09.904 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:45:09.914 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:45:09.914 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:45:09.914 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-18 04:45:09.924 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:45:09.924 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 65° ===================
17-03-18 04:45:09.924 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:45:09.924 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:45:11.694 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:11.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:13.994 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.007176,
17-03-18 04:45:16.694 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:19.364 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.993549,
17-03-18 04:45:21.694 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:24.734 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.989471,
17-03-18 04:45:26.694 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:30.114 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.978563,
17-03-18 04:45:31.694 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:35.474 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.964938,
17-03-18 04:45:36.704 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:36.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:39.934 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:45:39.934 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:45:39.934 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:45:40.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:40.064 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:45:40.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:45:40.064 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:45:40.194 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:45:40.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:40.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:40.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:40.804 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 04:45:40.804 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:45:40.844 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.98264,
17-03-18 04:45:40.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:40.964 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:45:40.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:45:41.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:45:41.124 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:45:41.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:45:41.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:45:41.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:45:41.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:41.704 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:41.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:41.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:41.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:41.744 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:45:41.744 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:45:41.744 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:45:41.744 -07 000000581 INF: WaitCommand(30000) start
17-03-18 04:45:41.744 -07 000000474 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:45:42.964 -07 000000474 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:45:42.964 -07 000000474 INF: LanePump: Xmit /1?\r
17-03-18 04:45:42.994 -07 000000474 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:45:42.994 -07 000000474 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:45:43.124 -07 000000474 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:45:43.164 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:45.504 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:45.534 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:45:45.954 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 04:45:45.984 -07 000000474 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:45:45.984 -07 000000474 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:45:45.984 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:45:45.984 -07 000000474 INF: ===================  ===================
17-03-18 04:45:46.214 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.016692,
17-03-18 04:45:46.704 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:51.594 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.038479,
17-03-18 04:45:51.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:56.704 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:45:56.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:45:56.954 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.007176,
17-03-18 04:46:01.704 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:01.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:46:02.324 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.033041,
17-03-18 04:46:06.704 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:06.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:46:07.694 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.0344,
17-03-18 04:46:11.704 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:11.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1798, R2=1868, Total=3666. Warn if over 250 bubbles per interval.
17-03-18 04:46:11.754 -07 000000581 INF: WaitCommand(30000) end
17-03-18 04:46:11.754 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 22° ===================
17-03-18 04:46:11.754 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:46:11.754 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:46:11.764 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:46:11.764 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:46:11.764 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:46:11.764 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 04:46:11.774 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:11.774 -07 000000610 INF: =================== Cycle #129, Flow Cell Temp 22° ===================
17-03-18 04:46:11.774 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:46:11.774 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:46:11.774 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:46:11.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:11.804 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:46:11.804 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:46:11.804 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:46:11.934 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:46:11.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:13.064 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.993549,
17-03-18 04:46:15.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:15.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:15.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:15.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:16.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:16.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:16.034 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:46:16.034 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:46:16.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:16.194 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:46:16.194 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:46:16.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:16.354 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:46:16.354 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:46:16.354 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:46:16.484 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:46:16.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:16.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:46:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:16.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:16.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:16.974 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:46:16.974 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:46:18.194 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:46:18.194 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:46:18.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:46:18.214 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:46:18.214 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:46:18.214 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:46:18.364 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:46:18.384 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:46:18.384 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:46:18.434 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:46:18.434 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.996267,
17-03-18 04:46:18.454 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:46:18.454 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:46:18.554 -07 000000610 INF: =================== Cycle #129, Pumping Reagent USM (2) ===================
17-03-18 04:46:18.554 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:46:18.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:18.584 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:46:18.584 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:46:18.584 -07 000000610 INF: =================== Cycle #129, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:46:18.714 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:46:18.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:20.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:20.224 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:20.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:20.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:20.674 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:46:20.674 -07 000000610 INF: =================== Cycle #129, Pumping Reagent USM (2) ===================
17-03-18 04:46:20.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:20.834 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:46:20.834 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:46:20.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:20.994 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:46:20.994 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:46:20.994 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:46:21.124 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:46:21.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:21.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:21.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:21.614 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:46:21.614 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:46:21.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:22.834 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:46:22.834 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:46:22.834 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:46:22.854 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:46:22.854 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:46:22.854 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:46:23.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:46:23.024 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:46:23.024 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:46:23.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:46:23.094 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:46:23.094 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:46:23.194 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:46:23.194 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:46:23.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:23.224 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:46:23.224 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:46:23.224 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:46:23.354 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:46:23.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:23.804 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.978563,
17-03-18 04:46:24.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:24.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:24.294 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:46:24.294 -07 000000610 INF: =================== Cycle #129, Pumping Reagent PR2 (3) ===================
17-03-18 04:46:24.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:24.454 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:46:24.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:46:24.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:46:24.614 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:46:24.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:46:24.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:46:24.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:46:24.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:25.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:25.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:25.234 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:46:25.234 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:46:25.234 -07 000000625 INF: WaitCommand(10000) start
17-03-18 04:46:25.234 -07 000000581 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:46:25.234 -07 000000581 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:46:26.454 -07 000000581 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:46:26.454 -07 000000581 INF: LanePump: Xmit /1?\r
17-03-18 04:46:26.484 -07 000000581 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:46:26.484 -07 000000581 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:46:26.614 -07 000000581 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:46:26.654 -07 000000581 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:26.704 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:28.184 -07 000000581 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:28.214 -07 000000581 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:46:28.634 -07 000000581 INF: LanePump: Xmit /1Q\r
17-03-18 04:46:28.664 -07 000000581 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:46:28.664 -07 000000581 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:46:28.664 -07 000000581 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:46:28.664 -07 000000581 INF: ===================  ===================
17-03-18 04:46:29.174 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.978563,
17-03-18 04:46:31.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:34.544 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.989471,
17-03-18 04:46:35.244 -07 000000625 INF: WaitCommand(10000) end
17-03-18 04:46:35.244 -07 000000610 INF: =================== Cycle #129, Imaging ===================
17-03-18 04:46:35.244 -07 000000610 INF: Imaging Cycle 129: ScanTilesCommand Cycle 129 time start.
17-03-18 04:46:35.244 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:46:35.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:46:35.274 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:46:35.274 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:46:35.274 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:46:35.574 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:46:35.594 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:46:35.594 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:46:35.644 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:46:35.664 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:46:35.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:35.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:35.664 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:46:35.664 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:35.664 -07 000000512 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:46:35.664 -07 000000502 INF: FPGA: Recv EXLED1ON 
17-03-18 04:46:35.674 -07 000000512 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:35.674 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:46:35.674 -07 000000467 INF: FPGA: Recv EXLED1ADCR 23155
17-03-18 04:46:35.684 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:35.684 -07 000000512 INF: RedLED: Using Red data: Photodiode ADC 23155 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 04:46:35.684 -07 000000512 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:46:35.684 -07 000000606 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:46:35.694 -07 000000512 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:46:35.694 -07 000000512 INF: RedLED: LED was on for 19 ms
17-03-18 04:46:35.694 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 04:46:35.694 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:46:35.694 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:35.694 -07 000000512 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:46:35.694 -07 000000382 INF: FPGA: Recv EXLED2ON 
17-03-18 04:46:35.704 -07 000000512 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:46:35.704 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:46:35.704 -07 000000569 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 04:46:35.714 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:35.714 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 04:46:35.714 -07 000000512 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:46:35.714 -07 000000474 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:46:35.724 -07 000000512 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:35.724 -07 000000512 INF: GreenLED: LED was on for 20 ms
17-03-18 04:46:35.724 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:46:35.724 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:46:35.724 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 04:46:35.734 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:46:35.734 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:46:36.234 -07 000000512 INF: FPGA: Recv EMOUT
17-03-18 04:46:36.234 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-18 04:46:36.234 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:46:36.234 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-18 04:46:36.244 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:36.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:46:36.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126445626182233. ------
17-03-18 04:46:36.244 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:46:36.244 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17837 mm
17-03-18 04:46:36.244 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:46:36.244 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:46:36.254 -07 000000581 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 04:46:36.254 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:46:36.254 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:46:36.254 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38964, sync = True, waitForSettling = False)
17-03-18 04:46:36.254 -07 000000382 INF: Z Motor: Moving to -0.178366 mm, started at -0.126446 mm, distance = -51.92 um
17-03-18 04:46:36.254 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:36.254 -07 000000569 INF: FPGA: Recv YRDPOS 154378
17-03-18 04:46:36.264 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:36.264 -07 000000581 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:36.264 -07 000000581 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:46:36.264 -07 000000581 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:46:36.264 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:46:36.274 -07 000000382 INF: FPGA: Xmit ZDACW 38964\n [Z Motor]
17-03-18 04:46:36.274 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:46:36.284 -07 000000382 INF: FPGA: 'ZDACW 38964' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:46:36.284 -07 000000581 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:46:36.294 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:36.294 -07 000000626 INF: FPGA: Recv ZDACR 38964
17-03-18 04:46:36.304 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:36.304 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:46:36.464 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:46:36.464 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 04:46:36.704 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:36.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:37.964 -07 000000512 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 04:46:37.964 -07 000000581 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 04:46:37.964 -07 000000581 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:46:37.964 -07 000000581 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 04:46:37.964 -07 000000581 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.467 mm, average velocity = 9.066 mm/sec
17-03-18 04:46:39.924 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.994908,
17-03-18 04:46:40.814 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:40.814 -07 000000618 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:46:40.824 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:40.824 -07 000000581 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:40.854 -07 000000581 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:46:40.854 -07 000000581 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:46:40.854 -07 000000581 INF: Y Motor: Moved to 59.9097 after 4601 ms
17-03-18 04:46:40.854 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178366 mm (DAC = 38964)
17-03-18 04:46:40.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.854 -07 000000382 INF: FPGA: Recv ZSGSRD 37063
17-03-18 04:46:40.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:46:40.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.864 -07 000000382 INF: FPGA: Recv ZSGSRD 37052
17-03-18 04:46:40.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.874 -07 000000480 INF: FPGA: Recv ZSGSRD 37052
17-03-18 04:46:40.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.884 -07 000000474 INF: FPGA: Recv ZSGSRD 37054
17-03-18 04:46:40.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.894 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.894 -07 000000512 INF: FPGA: Recv ZSGSRD 37056
17-03-18 04:46:40.904 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.904 -07 000000382 INF: FPGA: Recv ZSGSRD 37058
17-03-18 04:46:40.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.914 -07 000000480 INF: FPGA: Recv ZSGSRD 37053
17-03-18 04:46:40.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.924 -07 000000625 INF: FPGA: Recv ZSGSRD 37057
17-03-18 04:46:40.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.934 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.934 -07 000000569 INF: FPGA: Recv ZSGSRD 37054
17-03-18 04:46:40.944 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:40.944 -07 000000618 INF: FPGA: Recv ZSGSRD 37059
17-03-18 04:46:40.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.954 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:40.954 -07 000000480 INF: FPGA: Recv ZPIEZORD 33237
17-03-18 04:46:40.964 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:40.964 -07 000000424 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -8.5 V.
17-03-18 04:46:40.964 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37056 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37055 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37052 (-177.5 uncal um), Max = 37063 (-177.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:46:40.964 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37056, posNoise = 7, negNoise = 4
17-03-18 04:46:40.964 -07 000000424 INF: Z Motor: After move to -0.178366, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:40.964 -07 000000424 INF: Z Motor: Settle wait time = 4604 ms, measure time = 105 ms (allowed 150 ms), total time = 4709 ms
17-03-18 04:46:40.964 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:46:41.014 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 04:46:41.014 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:46:41.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:41.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:41.014 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:41.014 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:46:41.014 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:41.014 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:41.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:46:41.024 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:46:41.044 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:46:41.044 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:46:41.044 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:46:41.044 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:46:41.064 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:46:41.064 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 04:46:41.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:46:41.104 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:46:41.404 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:46:41.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:46:41.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:46:41.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2605493264, 0x0, 559484976) start.
17-03-18 04:46:41.444 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:46:41.444 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:46:41.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 04:46:41.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2605493264, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:46:41.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:41.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:46:41.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:46:41.644 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:46:41.644 -07 000000569 INF: Image SNR check: start
17-03-18 04:46:41.644 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:46:41.654 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:41.654 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:46:41.654 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=134.88]
17-03-18 04:46:41.654 -07 000000569 INF: Autofocus start
17-03-18 04:46:41.654 -07 000000569 INF: MeasureProfile start
17-03-18 04:46:41.664 -07 000000569 INF: MeasureProfile done
17-03-18 04:46:41.674 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:46:41.674 -07 000000569 INF: Autofocus finished
17-03-18 04:46:41.704 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:41.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:41.854 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:46:41.854 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:46:41.854 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178378957136229. ----------
17-03-18 04:46:41.854 -07 000000610 INF: Cycle	129	Tile	1	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:46:41.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37497, sync = True, waitForSettling = True)
17-03-18 04:46:41.864 -07 000000610 INF: Z Motor: Moving to -0.171650 mm, started at -0.178379 mm, distance = 6.73 um
17-03-18 04:46:41.864 -07 000000610 INF: FPGA: Xmit ZDACW 37497\n [Z Motor]
17-03-18 04:46:41.864 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:46:41.874 -07 000000610 INF: FPGA: 'ZDACW 37497' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:46:41.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:41.874 -07 000000625 INF: FPGA: Recv ZDACR 37497
17-03-18 04:46:41.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:41.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:46:42.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.034 -07 000000447 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:46:42.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:42.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.044 -07 000000424 INF: FPGA: Recv ZSGSRD 36013
17-03-18 04:46:42.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.054 -07 000000618 INF: FPGA: Recv ZSGSRD 36006
17-03-18 04:46:42.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36011
17-03-18 04:46:42.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.074 -07 000000581 INF: FPGA: Recv ZSGSRD 36014
17-03-18 04:46:42.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:46:42.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.094 -07 000000512 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:46:42.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.104 -07 000000480 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:46:42.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.114 -07 000000581 INF: FPGA: Recv ZSGSRD 36015
17-03-18 04:46:42.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:42.124 -07 000000467 INF: FPGA: Recv ZSGSRD 36008
17-03-18 04:46:42.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:42.134 -07 000000606 INF: FPGA: Recv ZPIEZORD 31875
17-03-18 04:46:42.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:42.144 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 04:46:42.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36010 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36006 (-170.8 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:46:42.144 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36010, posNoise = 5, negNoise = 4
17-03-18 04:46:42.144 -07 000000610 INF: Z Motor: After move to -0.171650, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:42.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:46:42.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:42.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:42.144 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:42.144 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:42.144 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:46:42.144 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:42.144 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:46:42.144 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:46:42.144 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:46:42.144 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:46:42.144 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:46:42.144 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:46:42.154 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:46:42.154 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:46:42.164 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:46:42.164 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:46:42.174 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:46:42.174 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:46:42.174 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:46:42.174 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:46:42.194 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:46:42.194 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-18 04:46:42.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37674 150\n [Camera]
17-03-18 04:46:42.394 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:46:42.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:46:42.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:46:42.824 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:42.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:42.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:46:42.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:46:42.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:46:42.824 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:42.824 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:42.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:46:43.014 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37674 811
17-03-18 04:46:43.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:46:43.204 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:46:43.204 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:46:43.204 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:43.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:46:43.214 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:46:43.214 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:43.214 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:46:43.224 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:46:43.224 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:46:43.224 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:46:43.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:46:43.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:46:43.364 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:43.364 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:43.364 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:46:43.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:46:43.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:46:43.374 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:43.374 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:43.374 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:46:43.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:46:43.554 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:46:43.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37674 150' command took 2 ms to send, 1358 ms to get response, and 1366 ms overall
17-03-18 04:46:43.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:46:43.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171659231235947. ------
17-03-18 04:46:43.564 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:46:43.564 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17785 mm
17-03-18 04:46:43.564 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:46:43.564 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:46:43.564 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38851, sync = True, waitForSettling = False)
17-03-18 04:46:43.564 -07 000000502 INF: Z Motor: Moving to -0.177848 mm, started at -0.171659 mm, distance = -6.19 um
17-03-18 04:46:43.564 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 04:46:43.564 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:46:43.574 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:46:43.574 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:43.574 -07 000000474 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:46:43.584 -07 000000502 INF: FPGA: Xmit ZDACW 38851\n [Z Motor]
17-03-18 04:46:43.584 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:46:43.584 -07 000000382 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:43.584 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:46:43.584 -07 000000382 INF: Y Motor: Moving 1333 steps0
17-03-18 04:46:43.584 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:46:43.594 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:46:43.594 -07 000000502 INF: FPGA: 'ZDACW 38851' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:46:43.604 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:46:43.614 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:43.614 -07 000000501 INF: FPGA: Recv ZDACR 38851
17-03-18 04:46:43.624 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:46:43.624 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:46:43.774 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:46:43.774 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:46:43.774 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:43.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:46:43.774 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:46:43.774 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:43.784 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:46:43.784 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:46:43.784 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:46:43.784 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:46:43.794 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:46:43.794 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:46:43.974 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:46:43.974 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:46:44.014 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:44.024 -07 000000581 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:46:44.024 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:46:44.024 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:44.024 -07 000000382 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:46:44.024 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 04:46:44.974 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:44.974 -07 000000424 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:46:44.984 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:44.984 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:45.014 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:46:45.014 -07 000000382 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:46:45.014 -07 000000382 INF: Y Motor: Moved to 60.7319 after 1447 ms (table move)
17-03-18 04:46:45.014 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177848 mm (DAC = 38851)
17-03-18 04:46:45.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.024 -07 000000512 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:46:45.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:45.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.034 -07 000000382 INF: FPGA: Recv ZSGSRD 36975
17-03-18 04:46:45.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.044 -07 000000581 INF: FPGA: Recv ZSGSRD 36970
17-03-18 04:46:45.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.054 -07 000000479 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:46:45.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:46:45.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.074 -07 000000480 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:46:45.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36976
17-03-18 04:46:45.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.094 -07 000000512 INF: FPGA: Recv ZSGSRD 36976
17-03-18 04:46:45.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.104 -07 000000479 INF: FPGA: Recv ZSGSRD 36982
17-03-18 04:46:45.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.114 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:45.114 -07 000000581 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:46:45.124 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.124 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:45.124 -07 000000424 INF: FPGA: Recv ZPIEZORD 33127
17-03-18 04:46:45.134 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:45.134 -07 000000569 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.5 V.
17-03-18 04:46:45.134 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36969 (-176.9 uncal um), Max = 36982 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:46:45.134 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 6, negNoise = 7
17-03-18 04:46:45.134 -07 000000569 INF: Z Motor: After move to -0.177848, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:45.134 -07 000000569 INF: Z Motor: Settle wait time = 1450 ms, measure time = 111 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:46:45.134 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 04:46:45.174 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 04:46:45.174 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:46:45.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:45.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:45.174 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:45.174 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:45.174 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:46:45.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:45.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:46:45.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:46:45.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:46:45.184 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:46:45.194 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:46:45.194 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:46:45.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:46:45.244 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:46:45.284 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.024884,
17-03-18 04:46:45.534 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:46:45.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:46:45.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:46:45.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-18 04:46:45.574 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:46:45.574 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:46:45.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:46:45.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:46:45.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:45.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:46:45.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:46:45.774 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:46:45.774 -07 000000625 INF: Autofocus start
17-03-18 04:46:45.774 -07 000000625 INF: MeasureProfile start
17-03-18 04:46:45.774 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:46:45.784 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:45.784 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:46:45.784 -07 000000625 INF: MeasureProfile done
17-03-18 04:46:45.784 -07 000000625 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:46:45.784 -07 000000625 INF: Autofocus finished
17-03-18 04:46:45.984 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:46:45.984 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:46:45.984 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177865020164888. ----------
17-03-18 04:46:45.984 -07 000000610 INF: Cycle	129	Tile	2	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:46:45.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37348, sync = True, waitForSettling = True)
17-03-18 04:46:45.994 -07 000000610 INF: Z Motor: Moving to -0.170968 mm, started at -0.177865 mm, distance = 6.90 um
17-03-18 04:46:45.994 -07 000000610 INF: FPGA: Xmit ZDACW 37348\n [Z Motor]
17-03-18 04:46:45.994 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:46:46.004 -07 000000610 INF: FPGA: 'ZDACW 37348' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:46:46.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:46.004 -07 000000474 INF: FPGA: Recv ZDACR 37348
17-03-18 04:46:46.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:46:46.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.164 -07 000000474 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:46:46.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:46.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.174 -07 000000626 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:46:46.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.184 -07 000000512 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:46:46.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.194 -07 000000467 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:46:46.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.204 -07 000000581 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:46:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.214 -07 000000625 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:46:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.224 -07 000000480 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:46:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.234 -07 000000424 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:46:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.244 -07 000000618 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:46:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:46.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:46:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:46.264 -07 000000382 INF: FPGA: Recv ZPIEZORD 31665
17-03-18 04:46:46.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:46.274 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.3 V.
17-03-18 04:46:46.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35905 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35905 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35902 (-170.1 uncal um), Max = 35907 (-170.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:46:46.274 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35905, posNoise = 2, negNoise = 3
17-03-18 04:46:46.274 -07 000000610 INF: Z Motor: After move to -0.170968, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:46.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:46:46.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:46.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:46.274 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:46.274 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:46:46.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:46.274 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:46:46.274 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:46:46.274 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:46.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:46:46.274 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:46:46.274 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:46:46.274 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:46:46.284 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:46:46.284 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:46:46.284 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:46:46.284 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:46:46.294 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:46:46.294 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:46:46.294 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:46:46.294 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:46:46.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37525 150\n [Camera]
17-03-18 04:46:46.504 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:46:46.704 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:46.924 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:46:46.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:46:46.924 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:46.924 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:46.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-18 04:46:46.924 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:46:46.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:46:46.934 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:46.934 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:46.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:46:47.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37525 811
17-03-18 04:46:47.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:46:47.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:46:47.324 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:46:47.324 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:47.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:46:47.334 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:46:47.334 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:47.334 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:47.334 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:46:47.334 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:47.344 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:46:47.474 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:46:47.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:46:47.474 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:47.474 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:47.474 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 04:46:47.474 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:46:47.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:46:47.474 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:47.474 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:47.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 04:46:47.664 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:46:47.664 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:46:47.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37525 150' command took 2 ms to send, 1356 ms to get response, and 1366 ms overall
17-03-18 04:46:47.664 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171752
17-03-18 04:46:47.664 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17175 mm
17-03-18 04:46:47.664 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:46:47.674 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:46:47.674 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:46:47.674 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:47.674 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37519, sync = True, waitForSettling = False)
17-03-18 04:46:47.674 -07 000000625 INF: Z Motor: Moving to -0.171751 mm, started at -0.170985 mm, distance = -0.77 um
17-03-18 04:46:47.674 -07 000000424 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:46:47.684 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:47.684 -07 000000512 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:47.684 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:46:47.684 -07 000000512 INF: Y Motor: Moving 1345 steps-22
17-03-18 04:46:47.684 -07 000000625 INF: FPGA: Xmit ZDACW 37519\n [Z Motor]
17-03-18 04:46:47.684 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:46:47.694 -07 000000625 INF: FPGA: 'ZDACW 37519' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:46:47.694 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:47.694 -07 000000447 INF: FPGA: Recv ZDACR 37519
17-03-18 04:46:47.704 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:47.704 -07 000000625 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 04:46:47.704 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:46:47.864 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:46:47.864 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:46:47.864 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:47.864 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:46:47.864 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:46:47.864 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:47.874 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:47.874 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:46:47.874 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:46:47.874 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:46:48.074 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:46:48.074 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:46:48.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:48.134 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:46:48.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:46:48.134 -07 000000512 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:48.134 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:46:48.134 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 04:46:49.084 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:49.084 -07 000000424 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:46:49.094 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:49.094 -07 000000512 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:49.124 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:46:49.124 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:46:49.124 -07 000000512 INF: Y Motor: Moved to 61.5625 after 1452 ms (table move)
17-03-18 04:46:49.124 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171751 mm (DAC = 37519)
17-03-18 04:46:49.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.124 -07 000000569 INF: FPGA: Recv ZSGSRD 36028
17-03-18 04:46:49.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:49.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.134 -07 000000502 INF: FPGA: Recv ZSGSRD 36023
17-03-18 04:46:49.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.144 -07 000000618 INF: FPGA: Recv ZSGSRD 36031
17-03-18 04:46:49.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.154 -07 000000501 INF: FPGA: Recv ZSGSRD 36026
17-03-18 04:46:49.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.164 -07 000000502 INF: FPGA: Recv ZSGSRD 36030
17-03-18 04:46:49.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.174 -07 000000480 INF: FPGA: Recv ZSGSRD 36027
17-03-18 04:46:49.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.184 -07 000000474 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:46:49.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.194 -07 000000581 INF: FPGA: Recv ZSGSRD 36025
17-03-18 04:46:49.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.204 -07 000000382 INF: FPGA: Recv ZSGSRD 36021
17-03-18 04:46:49.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.214 -07 000000618 INF: FPGA: Recv ZSGSRD 36022
17-03-18 04:46:49.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:49.224 -07 000000626 INF: FPGA: Recv ZPIEZORD 31903
17-03-18 04:46:49.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.234 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.725 V. Piezo Error = -9.1 V.
17-03-18 04:46:49.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36025 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36020 (-170.8 uncal um), Max = 36031 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:46:49.234 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36025, posNoise = 6, negNoise = 5
17-03-18 04:46:49.234 -07 000000610 INF: Z Motor: After move to -0.171751, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:49.234 -07 000000610 INF: Z Motor: Settle wait time = 1453 ms, measure time = 105 ms (allowed 150 ms), total time = 1558 ms
17-03-18 04:46:49.234 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:46:49.284 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:46:49.284 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:46:49.284 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.171755594418073. ----------
17-03-18 04:46:49.284 -07 000000610 INF: Cycle	129	Tile	3	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:46:49.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37342, sync = True, waitForSettling = True)
17-03-18 04:46:49.284 -07 000000610 INF: Z Motor: Moving to -0.170941 mm, started at -0.171756 mm, distance = 0.81 um
17-03-18 04:46:49.284 -07 000000610 INF: FPGA: Xmit ZDACW 37342\n [Z Motor]
17-03-18 04:46:49.284 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:46:49.294 -07 000000610 INF: FPGA: 'ZDACW 37342' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:46:49.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:49.294 -07 000000618 INF: FPGA: Recv ZDACR 37342
17-03-18 04:46:49.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:46:49.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.454 -07 000000626 INF: FPGA: Recv ZSGSRD 35900
17-03-18 04:46:49.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:49.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.464 -07 000000479 INF: FPGA: Recv ZSGSRD 35901
17-03-18 04:46:49.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:46:49.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.484 -07 000000424 INF: FPGA: Recv ZSGSRD 35894
17-03-18 04:46:49.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.494 -07 000000447 INF: FPGA: Recv ZSGSRD 35896
17-03-18 04:46:49.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35896
17-03-18 04:46:49.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:46:49.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.524 -07 000000625 INF: FPGA: Recv ZSGSRD 35898
17-03-18 04:46:49.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.534 -07 000000479 INF: FPGA: Recv ZSGSRD 35895
17-03-18 04:46:49.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:49.544 -07 000000474 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:46:49.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:49.554 -07 000000502 INF: FPGA: Recv ZPIEZORD 31711
17-03-18 04:46:49.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:49.564 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.2 V.
17-03-18 04:46:49.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35899 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35899 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35894 (-170.0 uncal um), Max = 35904 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:46:49.564 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35899, posNoise = 5, negNoise = 5
17-03-18 04:46:49.564 -07 000000610 INF: Z Motor: After move to -0.170941, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:49.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 04:46:49.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:49.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:49.564 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:49.564 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:49.564 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:46:49.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:49.564 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:46:49.564 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:46:49.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:46:49.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:46:49.564 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:46:49.564 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:46:49.574 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:46:49.574 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:46:49.574 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:46:49.574 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:46:49.584 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:46:49.584 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:46:49.584 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:46:49.584 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:46:49.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37519 150\n [Camera]
17-03-18 04:46:49.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:46:50.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:46:50.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:46:50.214 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:50.214 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:50.214 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:46:50.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:46:50.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:46:50.214 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:50.214 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:50.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:46:50.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37519 811
17-03-18 04:46:50.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:46:50.594 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:46:50.594 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:46:50.594 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:50.594 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:46:50.594 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:46:50.594 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:50.594 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:50.594 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:46:50.594 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:50.604 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:46:50.654 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.999021,
17-03-18 04:46:50.754 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:46:50.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:46:50.764 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:50.764 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:50.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:46:50.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:46:50.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:46:50.764 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:50.764 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:50.764 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:46:50.954 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1360
17-03-18 04:46:50.954 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:46:50.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37519 150' command took 2 ms to send, 1362 ms to get response, and 1367 ms overall
17-03-18 04:46:50.954 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171172
17-03-18 04:46:50.954 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17117 mm
17-03-18 04:46:50.954 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:46:50.954 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:46:50.954 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:46:50.954 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:50.954 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37392, sync = True, waitForSettling = False)
17-03-18 04:46:50.954 -07 000000581 INF: Z Motor: Moving to -0.171170 mm, started at -0.170946 mm, distance = -0.22 um
17-03-18 04:46:50.964 -07 000000581 INF: FPGA: Xmit ZDACW 37392\n [Z Motor]
17-03-18 04:46:50.964 -07 000000447 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:46:50.964 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:46:50.964 -07 000000618 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:50.964 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:46:50.964 -07 000000618 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:46:50.964 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:46:50.974 -07 000000581 INF: FPGA: 'ZDACW 37392' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:50.974 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:46:50.984 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:50.984 -07 000000480 INF: FPGA: Recv ZDACR 37392
17-03-18 04:46:50.994 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:50.994 -07 000000581 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 04:46:51.154 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:46:51.154 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:46:51.154 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:51.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:46:51.154 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:46:51.154 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:51.164 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:51.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:46:51.164 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:51.174 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:46:51.354 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:46:51.354 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-18 04:46:51.404 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:51.404 -07 000000501 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:46:51.414 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:46:51.414 -07 000000618 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:51.414 -07 000000618 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:46:51.414 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 04:46:51.704 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:52.364 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:52.364 -07 000000467 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:46:52.374 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:52.374 -07 000000618 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:52.404 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:46:52.404 -07 000000618 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:46:52.404 -07 000000618 INF: Y Motor: Moved to 62.3945 after 1444 ms (table move)
17-03-18 04:46:52.404 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171170 mm (DAC = 37392)
17-03-18 04:46:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35936
17-03-18 04:46:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:46:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35934
17-03-18 04:46:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.424 -07 000000625 INF: FPGA: Recv ZSGSRD 35931
17-03-18 04:46:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.434 -07 000000479 INF: FPGA: Recv ZSGSRD 35929
17-03-18 04:46:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35928
17-03-18 04:46:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35942
17-03-18 04:46:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.464 -07 000000480 INF: FPGA: Recv ZSGSRD 35927
17-03-18 04:46:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:46:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.474 -07 000000581 INF: FPGA: Recv ZSGSRD 35938
17-03-18 04:46:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.484 -07 000000424 INF: FPGA: Recv ZSGSRD 35937
17-03-18 04:46:52.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35937
17-03-18 04:46:52.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:52.504 -07 000000474 INF: FPGA: Recv ZPIEZORD 31781
17-03-18 04:46:52.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.514 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.2 V.
17-03-18 04:46:52.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35935 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35927 (-170.2 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:46:52.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 8, negNoise = 7
17-03-18 04:46:52.514 -07 000000610 INF: Z Motor: After move to -0.171170, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:52.514 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 107 ms (allowed 150 ms), total time = 1551 ms
17-03-18 04:46:52.514 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:46:52.564 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 04:46:52.564 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:46:52.564 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.171170991113173. ----------
17-03-18 04:46:52.564 -07 000000610 INF: Cycle	129	Tile	4	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:46:52.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37216, sync = True, waitForSettling = True)
17-03-18 04:46:52.564 -07 000000610 INF: Z Motor: Moving to -0.170364 mm, started at -0.171171 mm, distance = 0.81 um
17-03-18 04:46:52.564 -07 000000610 INF: FPGA: Xmit ZDACW 37216\n [Z Motor]
17-03-18 04:46:52.564 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:46:52.574 -07 000000610 INF: FPGA: 'ZDACW 37216' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:52.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:52.574 -07 000000606 INF: FPGA: Recv ZDACR 37216
17-03-18 04:46:52.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:46:52.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.734 -07 000000447 INF: FPGA: Recv ZSGSRD 35813
17-03-18 04:46:52.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.744 -07 000000625 INF: FPGA: Recv ZSGSRD 35809
17-03-18 04:46:52.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.754 -07 000000467 INF: FPGA: Recv ZSGSRD 35809
17-03-18 04:46:52.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.764 -07 000000501 INF: FPGA: Recv ZSGSRD 35809
17-03-18 04:46:52.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.774 -07 000000474 INF: FPGA: Recv ZSGSRD 35810
17-03-18 04:46:52.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35815
17-03-18 04:46:52.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.794 -07 000000424 INF: FPGA: Recv ZSGSRD 35807
17-03-18 04:46:52.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.804 -07 000000626 INF: FPGA: Recv ZSGSRD 35810
17-03-18 04:46:52.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35813
17-03-18 04:46:52.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:52.824 -07 000000581 INF: FPGA: Recv ZSGSRD 35813
17-03-18 04:46:52.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:52.834 -07 000000625 INF: FPGA: Recv ZPIEZORD 31593
17-03-18 04:46:52.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:52.844 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.3 V.
17-03-18 04:46:52.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35811 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35810 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35807 (-169.5 uncal um), Max = 35815 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:46:52.844 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35811, posNoise = 4, negNoise = 4
17-03-18 04:46:52.844 -07 000000610 INF: Z Motor: After move to -0.170364, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:52.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:46:52.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:52.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:52.844 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:52.844 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:52.844 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:46:52.844 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:52.844 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:46:52.844 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:46:52.844 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:46:52.844 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:46:52.844 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:46:52.844 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:46:52.854 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:46:52.854 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:46:52.854 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:46:52.854 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:46:52.854 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:46:52.854 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:46:52.864 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:46:52.864 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:46:52.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37392 150\n [Camera]
17-03-18 04:46:53.064 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:46:53.494 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:46:53.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:46:53.494 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:53.494 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:53.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:46:53.494 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:46:53.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:46:53.494 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:53.494 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:53.494 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 04:46:53.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37392 811
17-03-18 04:46:53.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:46:53.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:46:53.874 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:46:53.874 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:53.874 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:53.874 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:46:53.874 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:46:53.874 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:46:53.874 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:53.874 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:53.884 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:46:54.044 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1168
17-03-18 04:46:54.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1168
17-03-18 04:46:54.044 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:54.044 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:54.044 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 04:46:54.044 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:46:54.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:46:54.044 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:54.044 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:54.044 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 04:46:54.234 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:46:54.234 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:46:54.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37392 150' command took 2 ms to send, 1362 ms to get response, and 1366 ms overall
17-03-18 04:46:54.234 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.170984
17-03-18 04:46:54.234 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17098 mm
17-03-18 04:46:54.234 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:46:54.234 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:46:54.234 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:46:54.234 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:54.234 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37351, sync = True, waitForSettling = False)
17-03-18 04:46:54.234 -07 000000474 INF: Z Motor: Moving to -0.170982 mm, started at -0.170381 mm, distance = -0.60 um
17-03-18 04:46:54.244 -07 000000474 INF: FPGA: Xmit ZDACW 37351\n [Z Motor]
17-03-18 04:46:54.244 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:46:54.244 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:46:54.244 -07 000000512 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:54.244 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:46:54.244 -07 000000512 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:46:54.244 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:46:54.254 -07 000000474 INF: FPGA: 'ZDACW 37351' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:46:54.254 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:46:54.264 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:54.264 -07 000000447 INF: FPGA: Recv ZDACR 37351
17-03-18 04:46:54.274 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:54.274 -07 000000474 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 04:46:54.434 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:46:54.434 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:46:54.434 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:54.434 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:46:54.434 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:46:54.434 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:54.434 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:46:54.434 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:46:54.434 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:54.444 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:46:54.624 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:46:54.624 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:46:54.684 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:54.684 -07 000000618 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:46:54.694 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:54.694 -07 000000512 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:54.694 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:46:54.694 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-18 04:46:55.644 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:55.644 -07 000000501 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:46:55.654 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:55.654 -07 000000512 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:55.684 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:46:55.684 -07 000000512 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:46:55.684 -07 000000512 INF: Y Motor: Moved to 63.2227 after 1442 ms (table move)
17-03-18 04:46:55.684 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170982 mm (DAC = 37351)
17-03-18 04:46:55.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.684 -07 000000447 INF: FPGA: Recv ZSGSRD 35913
17-03-18 04:46:55.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:46:55.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.714 -07 000000474 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:46:55.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:46:55.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.744 -07 000000467 INF: FPGA: Recv ZSGSRD 35897
17-03-18 04:46:55.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:46:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:46:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.774 -07 000000606 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:46:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:55.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.784 -07 000000382 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:46:55.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.804 -07 000000474 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:46:55.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:55.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.814 -07 000000447 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:46:55.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:46:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:55.834 -07 000000382 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:46:55.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:55.844 -07 000000581 INF: FPGA: Recv ZPIEZORD 31776
17-03-18 04:46:55.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.1 V.
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35897 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 6, negNoise = 10
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: After move to -0.170982, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 166 ms (allowed 150 ms), total time = 1611 ms
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 166 ms, longer than max expected time of 150 ms
17-03-18 04:46:55.854 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:46:55.854 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:46:55.854 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.170997537385346. ----------
17-03-18 04:46:55.854 -07 000000610 INF: Cycle	129	Tile	5	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37175, sync = True, waitForSettling = True)
17-03-18 04:46:55.854 -07 000000610 INF: Z Motor: Moving to -0.170176 mm, started at -0.170998 mm, distance = 0.82 um
17-03-18 04:46:55.854 -07 000000610 INF: FPGA: Xmit ZDACW 37175\n [Z Motor]
17-03-18 04:46:55.854 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:46:55.864 -07 000000610 INF: FPGA: 'ZDACW 37175' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:46:55.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:55.864 -07 000000382 INF: FPGA: Recv ZDACR 37175
17-03-18 04:46:55.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:55.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:46:56.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.024 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.001704,
17-03-18 04:46:56.024 -07 000000474 INF: FPGA: Recv ZSGSRD 35789
17-03-18 04:46:56.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.054 -07 000000502 INF: FPGA: Recv ZSGSRD 35774
17-03-18 04:46:56.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:46:56.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.064 -07 000000502 INF: FPGA: Recv ZSGSRD 35783
17-03-18 04:46:56.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.084 -07 000000618 INF: FPGA: Recv ZSGSRD 35781
17-03-18 04:46:56.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:56.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.094 -07 000000479 INF: FPGA: Recv ZSGSRD 35785
17-03-18 04:46:56.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.114 -07 000000474 INF: FPGA: Recv ZSGSRD 35774
17-03-18 04:46:56.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:46:56.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.124 -07 000000625 INF: FPGA: Recv ZSGSRD 35778
17-03-18 04:46:56.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.134 -07 000000467 INF: FPGA: Recv ZSGSRD 35777
17-03-18 04:46:56.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.144 -07 000000479 INF: FPGA: Recv ZSGSRD 35784
17-03-18 04:46:56.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:56.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35779
17-03-18 04:46:56.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:56.164 -07 000000625 INF: FPGA: Recv ZPIEZORD 31555
17-03-18 04:46:56.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:56.174 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.3 V.
17-03-18 04:46:56.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35780 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35780 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35774 (-169.3 uncal um), Max = 35789 (-169.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:46:56.174 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35780, posNoise = 9, negNoise = 6
17-03-18 04:46:56.174 -07 000000610 INF: Z Motor: After move to -0.170176, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:56.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 315 ms)
17-03-18 04:46:56.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:56.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:56.174 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:46:56.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:56.174 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:56.174 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:46:56.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:46:56.174 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:56.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:46:56.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:46:56.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:46:56.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:46:56.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:46:56.174 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:46:56.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:46:56.184 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:46:56.194 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 04:46:56.194 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:46:56.194 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:46:56.194 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:46:56.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37351 150\n [Camera]
17-03-18 04:46:56.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:46:56.704 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:46:56.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:46:56.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:46:56.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:46:56.824 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:56.824 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:56.824 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 04:46:56.824 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:46:56.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:46:56.824 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:56.974 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:56.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:46:57.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37351 811
17-03-18 04:46:57.164 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:46:57.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:46:57.214 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:46:57.214 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:57.224 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:57.224 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:46:57.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:46:57.354 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:46:57.354 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:57.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:46:57.364 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 04:46:57.374 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:46:57.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:46:57.374 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:46:57.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:46:57.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:46:57.374 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:46:57.374 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:46:57.374 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:46:57.384 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:46:57.384 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:46:57.564 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:46:57.564 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:46:57.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37351 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-18 04:46:57.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:46:57.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170181662443342. ------
17-03-18 04:46:57.564 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:46:57.564 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17627 mm
17-03-18 04:46:57.574 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:46:57.574 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:46:57.574 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:46:57.574 -07 000000606 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 04:46:57.574 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38505, sync = True, waitForSettling = False)
17-03-18 04:46:57.574 -07 000000447 INF: Z Motor: Moving to -0.176265 mm, started at -0.170182 mm, distance = -6.08 um
17-03-18 04:46:57.584 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:57.584 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:57.584 -07 000000618 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:46:57.594 -07 000000447 INF: FPGA: Xmit ZDACW 38505\n [Z Motor]
17-03-18 04:46:57.594 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:46:57.594 -07 000000606 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:57.594 -07 000000606 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:46:57.594 -07 000000606 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:46:57.594 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:46:57.604 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:46:57.604 -07 000000447 INF: FPGA: 'ZDACW 38505' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:46:57.614 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:46:57.624 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:57.624 -07 000000502 INF: FPGA: Recv ZDACR 38505
17-03-18 04:46:57.634 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:46:57.634 -07 000000447 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 04:46:57.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:46:57.754 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:46:57.754 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:57.754 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:57.754 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:46:57.754 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:46:57.754 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:46:57.754 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:57.764 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:46:57.774 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:46:57.804 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:46:57.804 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:46:57.984 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:46:57.984 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:46:58.034 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:58.044 -07 000000474 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:46:58.044 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:46:58.044 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:58.044 -07 000000606 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:46:58.044 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 04:46:58.994 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:46:58.994 -07 000000479 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:46:59.004 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:46:59.004 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:46:59.034 -07 000000606 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:46:59.034 -07 000000606 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:46:59.034 -07 000000606 INF: Y Motor: Moved to 64.0557 after 1455 ms (table move)
17-03-18 04:46:59.034 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176265 mm (DAC = 38505)
17-03-18 04:46:59.034 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.044 -07 000000618 INF: FPGA: Recv ZSGSRD 36734
17-03-18 04:46:59.044 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 7 ms overall
17-03-18 04:46:59.044 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.044 -07 000000501 INF: FPGA: Recv ZSGSRD 36730
17-03-18 04:46:59.054 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:46:59.054 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.054 -07 000000581 INF: FPGA: Recv ZSGSRD 36730
17-03-18 04:46:59.064 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.064 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36722
17-03-18 04:46:59.074 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.074 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.074 -07 000000382 INF: FPGA: Recv ZSGSRD 36730
17-03-18 04:46:59.084 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.084 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.084 -07 000000512 INF: FPGA: Recv ZSGSRD 36733
17-03-18 04:46:59.094 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.094 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.094 -07 000000581 INF: FPGA: Recv ZSGSRD 36726
17-03-18 04:46:59.104 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.104 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.104 -07 000000569 INF: FPGA: Recv ZSGSRD 36723
17-03-18 04:46:59.114 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.114 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.114 -07 000000447 INF: FPGA: Recv ZSGSRD 36732
17-03-18 04:46:59.124 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.124 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:46:59.124 -07 000000512 INF: FPGA: Recv ZSGSRD 36729
17-03-18 04:46:59.134 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.134 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:46:59.134 -07 000000626 INF: FPGA: Recv ZPIEZORD 32845
17-03-18 04:46:59.144 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.144 -07 000000480 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.6 V.
17-03-18 04:46:59.144 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36729 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36730 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36722 (-175.3 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:46:59.144 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36729, posNoise = 5, negNoise = 7
17-03-18 04:46:59.144 -07 000000480 INF: Z Motor: After move to -0.176265, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:46:59.144 -07 000000480 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:46:59.144 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:46:59.194 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:46:59.194 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:46:59.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:46:59.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:46:59.194 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:46:59.194 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:46:59.194 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:46:59.194 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:46:59.194 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:46:59.194 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:46:59.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:46:59.204 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:46:59.214 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:46:59.214 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:46:59.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:46:59.264 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:46:59.564 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:46:59.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:46:59.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:46:59.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 04:46:59.604 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:46:59.604 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:46:59.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:46:59.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:46:59.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:46:59.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:46:59.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:46:59.704 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:46:59.704 -07 000000467 INF: Autofocus start
17-03-18 04:46:59.704 -07 000000467 INF: MeasureProfile start
17-03-18 04:46:59.704 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:46:59.714 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:46:59.714 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:46:59.714 -07 000000467 INF: MeasureProfile done
17-03-18 04:46:59.714 -07 000000467 INF: X=80  Z correction [um]=0.337546
17-03-18 04:46:59.714 -07 000000467 INF: Autofocus finished
17-03-18 04:46:59.914 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:46:59.914 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:46:59.914 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176278239765873. ----------
17-03-18 04:46:59.914 -07 000000610 INF: Cycle	129	Tile	6	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:46:59.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37092, sync = True, waitForSettling = True)
17-03-18 04:46:59.924 -07 000000610 INF: Z Motor: Moving to -0.169796 mm, started at -0.176278 mm, distance = 6.48 um
17-03-18 04:46:59.924 -07 000000610 INF: FPGA: Xmit ZDACW 37092\n [Z Motor]
17-03-18 04:46:59.924 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:46:59.934 -07 000000610 INF: FPGA: 'ZDACW 37092' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:46:59.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:46:59.934 -07 000000569 INF: FPGA: Recv ZDACR 37092
17-03-18 04:46:59.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:46:59.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:00.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.094 -07 000000467 INF: FPGA: Recv ZSGSRD 35721
17-03-18 04:47:00.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:00.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.104 -07 000000626 INF: FPGA: Recv ZSGSRD 35729
17-03-18 04:47:00.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35718
17-03-18 04:47:00.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35726
17-03-18 04:47:00.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.134 -07 000000625 INF: FPGA: Recv ZSGSRD 35722
17-03-18 04:47:00.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35717
17-03-18 04:47:00.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.154 -07 000000447 INF: FPGA: Recv ZSGSRD 35723
17-03-18 04:47:00.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.164 -07 000000581 INF: FPGA: Recv ZSGSRD 35723
17-03-18 04:47:00.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.174 -07 000000382 INF: FPGA: Recv ZSGSRD 35724
17-03-18 04:47:00.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:00.184 -07 000000479 INF: FPGA: Recv ZSGSRD 35724
17-03-18 04:47:00.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:00.194 -07 000000569 INF: FPGA: Recv ZPIEZORD 31490
17-03-18 04:47:00.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:00.204 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.3 V.
17-03-18 04:47:00.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35723 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35723 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35717 (-168.9 uncal um), Max = 35729 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:00.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35723, posNoise = 6, negNoise = 6
17-03-18 04:47:00.204 -07 000000610 INF: Z Motor: After move to -0.169796, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:00.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:47:00.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:00.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:00.204 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:00.204 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:00.204 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:00.204 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:00.204 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:00.204 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:00.204 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:00.204 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:00.204 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:00.204 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:00.214 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:00.214 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:00.214 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:00.214 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:00.224 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:47:00.224 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:47:00.224 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:47:00.224 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:00.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37268 150\n [Camera]
17-03-18 04:47:00.424 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:00.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-18 04:47:00.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-18 04:47:00.854 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:00.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-18 04:47:00.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-18 04:47:00.854 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:00.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:00.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) start.
17-03-18 04:47:00.994 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:00.994 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:01.044 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37268 811
17-03-18 04:47:01.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:01.364 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:47:01.364 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:47:01.364 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:01.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:47:01.364 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:47:01.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:01.374 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:01.374 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 04:47:01.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:01.374 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 04:47:01.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:01.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:01.404 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:01.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:01.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:01.404 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:01.404 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:01.404 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:47:01.404 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:01.414 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) start.
17-03-18 04:47:01.444 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.009895,
17-03-18 04:47:01.594 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:01.594 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:01.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37268 150' command took 2 ms to send, 1361 ms to get response, and 1365 ms overall
17-03-18 04:47:01.594 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170139
17-03-18 04:47:01.594 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17014 mm
17-03-18 04:47:01.594 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:01.594 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37167, sync = True, waitForSettling = False)
17-03-18 04:47:01.594 -07 000000467 INF: Z Motor: Moving to -0.170140 mm, started at -0.169815 mm, distance = -0.32 um
17-03-18 04:47:01.594 -07 000000467 INF: FPGA: Xmit ZDACW 37167\n [Z Motor]
17-03-18 04:47:01.604 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:47:01.604 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:47:01.604 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:01.604 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:47:01.604 -07 000000467 INF: FPGA: 'ZDACW 37167' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:47:01.604 -07 000000618 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:47:01.614 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:01.614 -07 000000480 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:01.614 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:01.614 -07 000000480 INF: Y Motor: Moving 1339 steps-14
17-03-18 04:47:01.614 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:01.614 -07 000000474 INF: FPGA: Recv ZDACR 37167
17-03-18 04:47:01.624 -07 000000467 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:47:01.624 -07 000000467 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 04:47:01.624 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:01.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:01.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:01.794 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:47:01.794 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:47:01.794 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:01.794 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:47:01.794 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:47:01.794 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:01.794 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:01.794 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:01.794 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:47:01.804 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:47:01.994 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:47:01.994 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:47:02.044 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:02.054 -07 000000467 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:47:02.054 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-18 04:47:02.054 -07 000000480 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:02.054 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:47:02.054 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-18 04:47:03.004 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:03.004 -07 000000447 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:47:03.014 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:03.014 -07 000000480 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:03.044 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:03.044 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:47:03.044 -07 000000480 INF: Y Motor: Moved to 64.8779 after 1440 ms (table move)
17-03-18 04:47:03.044 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170140 mm (DAC = 37167)
17-03-18 04:47:03.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.044 -07 000000606 INF: FPGA: Recv ZSGSRD 35776
17-03-18 04:47:03.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:47:03.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.054 -07 000000626 INF: FPGA: Recv ZSGSRD 35774
17-03-18 04:47:03.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.064 -07 000000625 INF: FPGA: Recv ZSGSRD 35780
17-03-18 04:47:03.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35776
17-03-18 04:47:03.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.084 -07 000000581 INF: FPGA: Recv ZSGSRD 35777
17-03-18 04:47:03.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.094 -07 000000581 INF: FPGA: Recv ZSGSRD 35779
17-03-18 04:47:03.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:03.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.104 -07 000000606 INF: FPGA: Recv ZSGSRD 35769
17-03-18 04:47:03.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.114 -07 000000467 INF: FPGA: Recv ZSGSRD 35772
17-03-18 04:47:03.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.124 -07 000000474 INF: FPGA: Recv ZSGSRD 35775
17-03-18 04:47:03.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.134 -07 000000480 INF: FPGA: Recv ZSGSRD 35779
17-03-18 04:47:03.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:03.144 -07 000000502 INF: FPGA: Recv ZPIEZORD 31595
17-03-18 04:47:03.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.154 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.2 V.
17-03-18 04:47:03.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35776 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35776 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35769 (-169.2 uncal um), Max = 35780 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:47:03.154 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35776, posNoise = 4, negNoise = 7
17-03-18 04:47:03.154 -07 000000610 INF: Z Motor: After move to -0.170140, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:03.154 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-18 04:47:03.154 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:03.204 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 04:47:03.204 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:03.204 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.170155965594775. ----------
17-03-18 04:47:03.204 -07 000000610 INF: Cycle	129	Tile	7	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:03.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36990, sync = True, waitForSettling = True)
17-03-18 04:47:03.204 -07 000000610 INF: Z Motor: Moving to -0.169329 mm, started at -0.170156 mm, distance = 0.83 um
17-03-18 04:47:03.204 -07 000000610 INF: FPGA: Xmit ZDACW 36990\n [Z Motor]
17-03-18 04:47:03.204 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:47:03.214 -07 000000610 INF: FPGA: 'ZDACW 36990' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:03.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:03.214 -07 000000618 INF: FPGA: Recv ZDACR 36990
17-03-18 04:47:03.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.374 -07 000000606 INF: FPGA: Recv ZSGSRD 35649
17-03-18 04:47:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.384 -07 000000512 INF: FPGA: Recv ZSGSRD 35649
17-03-18 04:47:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.394 -07 000000447 INF: FPGA: Recv ZSGSRD 35653
17-03-18 04:47:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35652
17-03-18 04:47:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.414 -07 000000479 INF: FPGA: Recv ZSGSRD 35646
17-03-18 04:47:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35648
17-03-18 04:47:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.434 -07 000000625 INF: FPGA: Recv ZSGSRD 35649
17-03-18 04:47:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.444 -07 000000581 INF: FPGA: Recv ZSGSRD 35648
17-03-18 04:47:03.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35648
17-03-18 04:47:03.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:03.464 -07 000000424 INF: FPGA: Recv ZSGSRD 35645
17-03-18 04:47:03.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:03.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:03.474 -07 000000502 INF: FPGA: Recv ZPIEZORD 31417
17-03-18 04:47:03.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:03.484 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.3 V.
17-03-18 04:47:03.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35649 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35648 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35645 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:47:03.484 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35649, posNoise = 4, negNoise = 4
17-03-18 04:47:03.484 -07 000000610 INF: Z Motor: After move to -0.169329, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:03.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:47:03.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:03.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:03.484 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:03.484 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:03.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:03.484 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:03.484 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:03.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:03.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:03.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:03.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:03.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:03.494 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:03.494 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:03.494 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:03.494 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:03.504 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:47:03.504 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:03.504 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:47:03.504 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:03.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37167 150\n [Camera]
17-03-18 04:47:03.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:04.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:04.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:04.134 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:04.134 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:04.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:04.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:04.134 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:04.134 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:47:04.144 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:04.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:47:04.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37167 811
17-03-18 04:47:04.474 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:04.514 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:47:04.514 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:47:04.514 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:04.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:47:04.524 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:47:04.524 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:04.524 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:04.524 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:47:04.524 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:04.534 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:47:04.684 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:04.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:04.684 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:04.684 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:04.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:04.684 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:04.684 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:04.684 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:47:04.694 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:04.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:47:04.874 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:04.874 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:04.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37167 150' command took 2 ms to send, 1362 ms to get response, and 1365 ms overall
17-03-18 04:47:04.874 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170069
17-03-18 04:47:04.874 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17007 mm
17-03-18 04:47:04.874 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:04.994 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37152, sync = True, waitForSettling = False)
17-03-18 04:47:04.994 -07 000000606 INF: Z Motor: Moving to -0.170071 mm, started at -0.169340 mm, distance = -0.73 um
17-03-18 04:47:04.994 -07 000000606 INF: FPGA: Xmit ZDACW 37152\n [Z Motor]
17-03-18 04:47:04.994 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:47:04.994 -07 000000581 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 04:47:04.994 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:47:05.004 -07 000000606 INF: FPGA: 'ZDACW 37152' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:05.004 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:05.004 -07 000000618 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:47:05.014 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:47:05.014 -07 000000581 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:05.014 -07 000000581 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:05.014 -07 000000581 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:47:05.014 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:05.014 -07 000000502 INF: FPGA: Recv ZDACR 37152
17-03-18 04:47:05.024 -07 000000606 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:05.024 -07 000000606 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 04:47:05.024 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:05.064 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:47:05.064 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:47:05.064 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:05.064 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:47:05.064 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:47:05.064 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:05.064 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:05.074 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:05.074 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:47:05.074 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:47:05.394 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:47:05.394 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:47:05.454 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:05.454 -07 000000569 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:47:05.464 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:05.464 -07 000000581 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:05.464 -07 000000581 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:47:05.464 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 04:47:06.414 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:06.414 -07 000000424 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:47:06.424 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:06.424 -07 000000581 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:06.454 -07 000000581 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:06.454 -07 000000581 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:06.454 -07 000000581 INF: Y Motor: Moved to 65.7129 after 1466 ms (table move)
17-03-18 04:47:06.464 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170071 mm (DAC = 37152)
17-03-18 04:47:06.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.464 -07 000000424 INF: FPGA: Recv ZSGSRD 35771
17-03-18 04:47:06.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:06.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.474 -07 000000512 INF: FPGA: Recv ZSGSRD 35761
17-03-18 04:47:06.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35766
17-03-18 04:47:06.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:06.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.524 -07 000000474 INF: FPGA: Recv ZSGSRD 35771
17-03-18 04:47:06.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:06.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.534 -07 000000467 INF: FPGA: Recv ZSGSRD 35764
17-03-18 04:47:06.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.554 -07 000000581 INF: FPGA: Recv ZSGSRD 35766
17-03-18 04:47:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.564 -07 000000502 INF: FPGA: Recv ZSGSRD 35761
17-03-18 04:47:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.584 -07 000000382 INF: FPGA: Recv ZSGSRD 35762
17-03-18 04:47:06.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:06.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.594 -07 000000467 INF: FPGA: Recv ZSGSRD 35773
17-03-18 04:47:06.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35768
17-03-18 04:47:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:06.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:06.624 -07 000000479 INF: FPGA: Recv ZPIEZORD 31572
17-03-18 04:47:06.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.2 V.
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35766 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35766 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35761 (-169.2 uncal um), Max = 35773 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35766, posNoise = 7, negNoise = 5
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: After move to -0.170071, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: Settle wait time = 1469 ms, measure time = 169 ms (allowed 150 ms), total time = 1638 ms
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 169 ms, longer than max expected time of 150 ms
17-03-18 04:47:06.634 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1756 ms
17-03-18 04:47:06.634 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:06.634 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.170091723473357. ----------
17-03-18 04:47:06.634 -07 000000610 INF: Cycle	129	Tile	8	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36975, sync = True, waitForSettling = True)
17-03-18 04:47:06.634 -07 000000610 INF: Z Motor: Moving to -0.169261 mm, started at -0.170092 mm, distance = 0.83 um
17-03-18 04:47:06.634 -07 000000610 INF: FPGA: Xmit ZDACW 36975\n [Z Motor]
17-03-18 04:47:06.644 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:47:06.644 -07 000000610 INF: FPGA: 'ZDACW 36975' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 04:47:06.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:06.644 -07 000000382 INF: FPGA: Recv ZDACR 36975
17-03-18 04:47:06.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:06.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:06.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:06.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:06.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.804 -07 000000501 INF: FPGA: Recv ZSGSRD 35640
17-03-18 04:47:06.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.824 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.012614,
17-03-18 04:47:06.824 -07 000000626 INF: FPGA: Recv ZSGSRD 35647
17-03-18 04:47:06.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:06.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.854 -07 000000502 INF: FPGA: Recv ZSGSRD 35637
17-03-18 04:47:06.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.884 -07 000000502 INF: FPGA: Recv ZSGSRD 35637
17-03-18 04:47:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.894 -07 000000512 INF: FPGA: Recv ZSGSRD 35633
17-03-18 04:47:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.904 -07 000000618 INF: FPGA: Recv ZSGSRD 35643
17-03-18 04:47:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.914 -07 000000424 INF: FPGA: Recv ZSGSRD 35639
17-03-18 04:47:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.924 -07 000000626 INF: FPGA: Recv ZSGSRD 35637
17-03-18 04:47:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.934 -07 000000382 INF: FPGA: Recv ZSGSRD 35639
17-03-18 04:47:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:06.944 -07 000000474 INF: FPGA: Recv ZSGSRD 35638
17-03-18 04:47:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:06.954 -07 000000501 INF: FPGA: Recv ZPIEZORD 31382
17-03-18 04:47:06.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:06.964 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -9.4 V.
17-03-18 04:47:06.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35639 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35638 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35633 (-168.4 uncal um), Max = 35647 (-168.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:06.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35639, posNoise = 8, negNoise = 6
17-03-18 04:47:06.964 -07 000000610 INF: Z Motor: After move to -0.169261, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:06.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-18 04:47:06.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:06.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:06.964 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:06.964 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:06.964 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:06.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:06.964 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:06.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:06.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:06.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:06.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:06.964 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:06.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:06.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:06.974 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:06.974 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:06.984 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:47:06.984 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:47:06.984 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:47:06.984 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:47:06.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37152 150\n [Camera]
17-03-18 04:47:07.184 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:07.614 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:07.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:07.614 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:07.614 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:07.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:07.624 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:07.624 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:07.624 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:47:07.624 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:07.624 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:47:07.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37152 811
17-03-18 04:47:07.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:07.994 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:47:07.994 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:47:07.994 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:07.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:47:07.994 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:47:07.994 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:08.004 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:08.004 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:47:08.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:08.004 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:47:08.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:08.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:08.164 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:08.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:08.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:08.164 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:08.164 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:08.164 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:47:08.174 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:08.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:47:08.354 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1360
17-03-18 04:47:08.354 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:08.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37152 150' command took 2 ms to send, 1357 ms to get response, and 1367 ms overall
17-03-18 04:47:08.354 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169704
17-03-18 04:47:08.354 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16970 mm
17-03-18 04:47:08.354 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:08.364 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37072, sync = True, waitForSettling = False)
17-03-18 04:47:08.364 -07 000000467 INF: Z Motor: Moving to -0.169705 mm, started at -0.169276 mm, distance = -0.43 um
17-03-18 04:47:08.364 -07 000000467 INF: FPGA: Xmit ZDACW 37072\n [Z Motor]
17-03-18 04:47:08.364 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:47:08.364 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:47:08.364 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:47:08.374 -07 000000467 INF: FPGA: 'ZDACW 37072' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:08.374 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:08.374 -07 000000480 INF: FPGA: Recv ZDACR 37072
17-03-18 04:47:08.384 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:08.384 -07 000000467 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 04:47:08.384 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:08.384 -07 000000479 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:47:08.394 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:47:08.394 -07 000000625 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:08.394 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:08.394 -07 000000625 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:47:08.394 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:08.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:47:08.554 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:47:08.554 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:08.554 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:47:08.554 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:47:08.554 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:08.554 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:08.554 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:47:08.564 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:08.564 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:47:08.764 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:47:08.764 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 04:47:08.814 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:08.824 -07 000000569 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:47:08.824 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:47:08.824 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:08.824 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:47:08.824 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-18 04:47:09.774 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:09.774 -07 000000479 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:47:09.784 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.784 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:09.814 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:09.814 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:09.814 -07 000000625 INF: Y Motor: Moved to 66.5376 after 1447 ms (table move)
17-03-18 04:47:09.814 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169705 mm (DAC = 37072)
17-03-18 04:47:09.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35714
17-03-18 04:47:09.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:09.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.824 -07 000000618 INF: FPGA: Recv ZSGSRD 35710
17-03-18 04:47:09.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.834 -07 000000479 INF: FPGA: Recv ZSGSRD 35712
17-03-18 04:47:09.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35702
17-03-18 04:47:09.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.854 -07 000000447 INF: FPGA: Recv ZSGSRD 35704
17-03-18 04:47:09.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.864 -07 000000480 INF: FPGA: Recv ZSGSRD 35705
17-03-18 04:47:09.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.874 -07 000000512 INF: FPGA: Recv ZSGSRD 35707
17-03-18 04:47:09.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.884 -07 000000474 INF: FPGA: Recv ZSGSRD 35703
17-03-18 04:47:09.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.894 -07 000000625 INF: FPGA: Recv ZSGSRD 35710
17-03-18 04:47:09.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:09.904 -07 000000626 INF: FPGA: Recv ZSGSRD 35712
17-03-18 04:47:09.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:09.914 -07 000000606 INF: FPGA: Recv ZPIEZORD 31506
17-03-18 04:47:09.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.924 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -9.3 V.
17-03-18 04:47:09.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35708 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35708 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35702 (-168.8 uncal um), Max = 35714 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:09.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35708, posNoise = 6, negNoise = 6
17-03-18 04:47:09.924 -07 000000610 INF: Z Motor: After move to -0.169705, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:09.924 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:47:09.924 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:09.974 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:47:09.974 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:09.974 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.169719119169135. ----------
17-03-18 04:47:09.974 -07 000000610 INF: Cycle	129	Tile	9	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:09.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36895, sync = True, waitForSettling = True)
17-03-18 04:47:09.974 -07 000000610 INF: Z Motor: Moving to -0.168894 mm, started at -0.169719 mm, distance = 0.82 um
17-03-18 04:47:09.974 -07 000000610 INF: FPGA: Xmit ZDACW 36895\n [Z Motor]
17-03-18 04:47:09.974 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:47:09.984 -07 000000610 INF: FPGA: 'ZDACW 36895' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:09.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:09.984 -07 000000626 INF: FPGA: Recv ZDACR 36895
17-03-18 04:47:09.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:09.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:10.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:47:10.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:10.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.154 -07 000000501 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:47:10.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.164 -07 000000581 INF: FPGA: Recv ZSGSRD 35581
17-03-18 04:47:10.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.174 -07 000000382 INF: FPGA: Recv ZSGSRD 35582
17-03-18 04:47:10.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.184 -07 000000512 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:10.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.194 -07 000000479 INF: FPGA: Recv ZSGSRD 35583
17-03-18 04:47:10.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.204 -07 000000581 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:10.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.214 -07 000000618 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:10.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.224 -07 000000618 INF: FPGA: Recv ZSGSRD 35583
17-03-18 04:47:10.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:10.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:10.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:47:10.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:10.244 -07 000000479 INF: FPGA: Recv ZPIEZORD 31301
17-03-18 04:47:10.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:10.254 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.4 V.
17-03-18 04:47:10.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35580 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35580 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35574 (-168.0 uncal um), Max = 35583 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:10.254 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35580, posNoise = 3, negNoise = 6
17-03-18 04:47:10.254 -07 000000610 INF: Z Motor: After move to -0.168894, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:10.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:47:10.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:10.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:10.254 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:10.254 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:10.254 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:10.254 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:10.254 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:10.254 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:10.254 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:47:10.254 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:10.254 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:10.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:10.254 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:47:10.254 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:10.264 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:10.264 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:10.274 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:47:10.274 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:47:10.274 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:47:10.274 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:47:10.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37072 150\n [Camera]
17-03-18 04:47:10.474 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:10.904 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:10.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:10.904 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:10.904 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:10.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:10.904 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:10.904 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:10.904 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:47:10.914 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:10.914 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:47:11.094 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37072 811
17-03-18 04:47:11.244 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:47:11.284 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:47:11.284 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:47:11.284 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:11.284 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 04:47:11.284 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 04:47:11.284 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:11.284 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:11.284 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:47:11.284 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:11.294 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:47:11.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:11.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:11.454 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:11.454 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:11.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:11.454 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:11.454 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:11.454 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:47:11.454 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:11.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:47:11.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:47:11.644 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:11.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37072 150' command took 2 ms to send, 1361 ms to get response, and 1365 ms overall
17-03-18 04:47:11.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:11.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.16889682001499. ------
17-03-18 04:47:11.764 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:11.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:11.764 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:11.764 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17569 mm
17-03-18 04:47:11.764 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:11.774 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:47:11.774 -07 000000447 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 04:47:11.774 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:11.774 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:11.774 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:11.774 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38379, sync = True, waitForSettling = False)
17-03-18 04:47:11.774 -07 000000625 INF: Z Motor: Moving to -0.175688 mm, started at -0.168897 mm, distance = -6.79 um
17-03-18 04:47:11.774 -07 000000480 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:47:11.784 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:11.784 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:11.784 -07 000000447 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:11.784 -07 000000447 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:11.784 -07 000000447 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:47:11.794 -07 000000625 INF: FPGA: Xmit ZDACW 38379\n [Z Motor]
17-03-18 04:47:11.794 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:47:11.804 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:11.804 -07 000000625 INF: FPGA: 'ZDACW 38379' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:47:11.814 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:11.814 -07 000000618 INF: FPGA: Recv ZDACR 38379
17-03-18 04:47:11.824 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:11.824 -07 000000625 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:47:11.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:47:11.834 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:47:11.834 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:11.834 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:47:11.834 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:47:11.834 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:11.834 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:11.844 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:11.844 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:47:11.844 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:47:11.984 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:11.984 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 04:47:12.174 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:47:12.174 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:47:12.224 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:12.234 -07 000000467 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:47:12.234 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:47:12.234 -07 000000447 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:12.234 -07 000000447 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 04:47:12.234 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:47:12.244 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.012614,
17-03-18 04:47:13.184 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:13.184 -07 000000569 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:47:13.194 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.194 -07 000000447 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:13.224 -07 000000447 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:13.224 -07 000000447 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:13.224 -07 000000447 INF: Y Motor: Moved to 67.3706 after 1450 ms (table move)
17-03-18 04:47:13.224 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175688 mm (DAC = 38379)
17-03-18 04:47:13.224 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.224 -07 000000618 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:47:13.234 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:13.234 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:47:13.244 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.244 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.244 -07 000000467 INF: FPGA: Recv ZSGSRD 36633
17-03-18 04:47:13.254 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.254 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.254 -07 000000474 INF: FPGA: Recv ZSGSRD 36630
17-03-18 04:47:13.264 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.264 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.264 -07 000000625 INF: FPGA: Recv ZSGSRD 36635
17-03-18 04:47:13.274 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.274 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.274 -07 000000502 INF: FPGA: Recv ZSGSRD 36634
17-03-18 04:47:13.284 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.284 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.284 -07 000000512 INF: FPGA: Recv ZSGSRD 36635
17-03-18 04:47:13.294 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.294 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.294 -07 000000569 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:47:13.304 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.304 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.304 -07 000000606 INF: FPGA: Recv ZSGSRD 36641
17-03-18 04:47:13.314 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.314 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:13.314 -07 000000479 INF: FPGA: Recv ZSGSRD 36642
17-03-18 04:47:13.324 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.324 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:13.324 -07 000000626 INF: FPGA: Recv ZPIEZORD 32724
17-03-18 04:47:13.334 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:13.334 -07 000000424 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.7 V.
17-03-18 04:47:13.334 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36630 (-174.8 uncal um), Max = 36645 (-174.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:47:13.334 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 8, negNoise = 7
17-03-18 04:47:13.334 -07 000000424 INF: Z Motor: After move to -0.175688, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:13.334 -07 000000424 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:47:13.334 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:13.384 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:47:13.384 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:13.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:13.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:13.384 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:13.384 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:13.384 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:13.384 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:13.384 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:47:13.384 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:13.394 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:13.394 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:13.404 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:47:13.404 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:47:13.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:13.444 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:13.744 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:13.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:13.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:13.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:47:13.784 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:13.784 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:13.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:47:13.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:47:13.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:13.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:13.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:47:13.984 -07 000000502 INF: Autofocus start
17-03-18 04:47:13.984 -07 000000502 INF: MeasureProfile start
17-03-18 04:47:13.984 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:13.984 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:13.994 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:13.994 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:13.994 -07 000000502 INF: MeasureProfile done
17-03-18 04:47:13.994 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:47:13.994 -07 000000502 INF: Autofocus finished
17-03-18 04:47:14.194 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:14.194 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:47:14.194 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175687212248831. ----------
17-03-18 04:47:14.194 -07 000000610 INF: Cycle	129	Tile	10	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:14.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36894, sync = True, waitForSettling = True)
17-03-18 04:47:14.204 -07 000000610 INF: Z Motor: Moving to -0.168890 mm, started at -0.175687 mm, distance = 6.80 um
17-03-18 04:47:14.204 -07 000000610 INF: FPGA: Xmit ZDACW 36894\n [Z Motor]
17-03-18 04:47:14.204 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:47:14.214 -07 000000610 INF: FPGA: 'ZDACW 36894' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:14.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:14.214 -07 000000626 INF: FPGA: Recv ZDACR 36894
17-03-18 04:47:14.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:14.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.374 -07 000000626 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:47:14.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:14.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.384 -07 000000467 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:14.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:14.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:14.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.414 -07 000000606 INF: FPGA: Recv ZSGSRD 35579
17-03-18 04:47:14.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.424 -07 000000581 INF: FPGA: Recv ZSGSRD 35585
17-03-18 04:47:14.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35581
17-03-18 04:47:14.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:47:14.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.454 -07 000000501 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:14.464 -07 000000479 INF: FPGA: Recv ZSGSRD 35584
17-03-18 04:47:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:14.474 -07 000000467 INF: FPGA: Recv ZPIEZORD 31338
17-03-18 04:47:14.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:14.484 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.4 V.
17-03-18 04:47:14.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35580 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35580 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35577 (-168.0 uncal um), Max = 35585 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:47:14.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35580, posNoise = 5, negNoise = 3
17-03-18 04:47:14.484 -07 000000610 INF: Z Motor: After move to -0.168890, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:14.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:47:14.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:14.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:14.484 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:14.484 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:14.484 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:14.484 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:14.484 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:14.484 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:14.494 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:14.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:14.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:14.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:14.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:47:14.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:47:14.494 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:14.494 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:14.504 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:47:14.504 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:47:14.504 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:47:14.504 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:47:14.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37070 150\n [Camera]
17-03-18 04:47:14.714 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:15.134 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:15.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:15.134 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:15.144 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:15.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:15.144 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:15.144 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:15.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:47:15.144 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:15.144 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:47:15.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37070 811
17-03-18 04:47:15.474 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:15.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:47:15.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:47:15.514 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:15.514 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:47:15.514 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:47:15.514 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:15.524 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:15.524 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:47:15.524 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:15.534 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:47:15.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:15.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:15.684 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:15.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:15.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:15.684 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:15.694 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:15.694 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:47:15.694 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:15.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:47:15.874 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:15.874 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:15.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37070 150' command took 2 ms to send, 1357 ms to get response, and 1366 ms overall
17-03-18 04:47:15.874 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169163
17-03-18 04:47:15.874 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16916 mm
17-03-18 04:47:15.884 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:15.884 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:47:15.884 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 04:47:15.884 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:15.884 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 36954, sync = True, waitForSettling = False)
17-03-18 04:47:15.884 -07 000000479 INF: Z Motor: Moving to -0.169165 mm, started at -0.168897 mm, distance = -0.27 um
17-03-18 04:47:15.884 -07 000000502 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:47:15.894 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:47:15.894 -07 000000618 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:15.894 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:15.894 -07 000000618 INF: Y Motor: Moving 1347 steps-25
17-03-18 04:47:15.894 -07 000000479 INF: FPGA: Xmit ZDACW 36954\n [Z Motor]
17-03-18 04:47:15.894 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:47:15.904 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:15.904 -07 000000479 INF: FPGA: 'ZDACW 36954' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:47:15.914 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:15.914 -07 000000480 INF: FPGA: Recv ZDACR 36954
17-03-18 04:47:15.924 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:15.924 -07 000000479 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:47:16.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:47:16.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:47:16.074 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:16.074 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:47:16.074 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:47:16.074 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:16.074 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:16.084 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:16.084 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:47:16.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:47:16.274 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:47:16.274 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:47:16.324 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:16.334 -07 000000474 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:47:16.334 -07 000000618 INF: FPGA: 'YRDPOS' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 04:47:16.334 -07 000000618 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:16.334 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:47:16.334 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.842 mm, average velocity = 2.176 mm/sec
17-03-18 04:47:16.704 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:17.294 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:17.294 -07 000000502 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:47:17.304 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:17.304 -07 000000618 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:17.334 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:17.334 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:17.334 -07 000000618 INF: Y Motor: Moved to 68.2036 after 1451 ms (table move)
17-03-18 04:47:17.334 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169165 mm (DAC = 36954)
17-03-18 04:47:17.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.354 -07 000000569 INF: FPGA: Recv ZSGSRD 35614
17-03-18 04:47:17.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:47:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.364 -07 000000581 INF: FPGA: Recv ZSGSRD 35619
17-03-18 04:47:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.374 -07 000000467 INF: FPGA: Recv ZSGSRD 35621
17-03-18 04:47:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.384 -07 000000467 INF: FPGA: Recv ZSGSRD 35627
17-03-18 04:47:17.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.394 -07 000000618 INF: FPGA: Recv ZSGSRD 35626
17-03-18 04:47:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.404 -07 000000512 INF: FPGA: Recv ZSGSRD 35620
17-03-18 04:47:17.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.414 -07 000000581 INF: FPGA: Recv ZSGSRD 35629
17-03-18 04:47:17.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.424 -07 000000625 INF: FPGA: Recv ZSGSRD 35623
17-03-18 04:47:17.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.434 -07 000000502 INF: FPGA: Recv ZSGSRD 35621
17-03-18 04:47:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35611
17-03-18 04:47:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:17.454 -07 000000479 INF: FPGA: Recv ZPIEZORD 31415
17-03-18 04:47:17.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.464 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.3 V.
17-03-18 04:47:17.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35621 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35621 (-168.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35611 (-168.2 uncal um), Max = 35629 (-168.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:47:17.464 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35621, posNoise = 8, negNoise = 10
17-03-18 04:47:17.464 -07 000000610 INF: Z Motor: After move to -0.169165, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:17.464 -07 000000610 INF: Z Motor: Settle wait time = 1453 ms, measure time = 125 ms (allowed 150 ms), total time = 1578 ms
17-03-18 04:47:17.464 -07 000000610 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:17.494 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:47:17.494 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:17.494 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.169160212712802. ----------
17-03-18 04:47:17.494 -07 000000610 INF: Cycle	129	Tile	11	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:17.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36777, sync = True, waitForSettling = True)
17-03-18 04:47:17.494 -07 000000610 INF: Z Motor: Moving to -0.168354 mm, started at -0.169160 mm, distance = 0.81 um
17-03-18 04:47:17.494 -07 000000610 INF: FPGA: Xmit ZDACW 36777\n [Z Motor]
17-03-18 04:47:17.494 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:47:17.504 -07 000000610 INF: FPGA: 'ZDACW 36777' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:17.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:17.504 -07 000000467 INF: FPGA: Recv ZDACR 36777
17-03-18 04:47:17.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:17.624 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.000345,
17-03-18 04:47:17.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.664 -07 000000569 INF: FPGA: Recv ZSGSRD 35498
17-03-18 04:47:17.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:17.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.674 -07 000000502 INF: FPGA: Recv ZSGSRD 35497
17-03-18 04:47:17.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35497
17-03-18 04:47:17.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.694 -07 000000479 INF: FPGA: Recv ZSGSRD 35496
17-03-18 04:47:17.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.704 -07 000000569 INF: FPGA: Recv ZSGSRD 35499
17-03-18 04:47:17.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.714 -07 000000502 INF: FPGA: Recv ZSGSRD 35502
17-03-18 04:47:17.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.724 -07 000000501 INF: FPGA: Recv ZSGSRD 35498
17-03-18 04:47:17.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.734 -07 000000382 INF: FPGA: Recv ZSGSRD 35493
17-03-18 04:47:17.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.744 -07 000000467 INF: FPGA: Recv ZSGSRD 35498
17-03-18 04:47:17.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:17.754 -07 000000447 INF: FPGA: Recv ZSGSRD 35498
17-03-18 04:47:17.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:17.764 -07 000000480 INF: FPGA: Recv ZPIEZORD 31242
17-03-18 04:47:17.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:17.774 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.4 V.
17-03-18 04:47:17.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35498 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35498 (-167.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35493 (-167.5 uncal um), Max = 35502 (-167.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:47:17.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35498, posNoise = 4, negNoise = 5
17-03-18 04:47:17.774 -07 000000610 INF: Z Motor: After move to -0.168354, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:17.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:47:17.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:17.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:17.774 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:17.774 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:17.774 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:17.774 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:17.774 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:17.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:17.774 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:17.774 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:17.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:17.774 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:17.784 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:17.784 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:17.784 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:17.784 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:17.794 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:47:17.794 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:17.794 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:47:17.794 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:17.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36954 150\n [Camera]
17-03-18 04:47:17.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:18.424 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:18.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:18.424 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:18.424 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:18.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:18.424 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:18.534 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:18.534 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:47:18.544 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:18.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:18.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36954 811
17-03-18 04:47:18.764 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:18.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:47:18.914 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:47:18.914 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:18.924 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:18.924 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-18 04:47:18.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:47:18.924 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:47:18.924 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:18.924 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:18.934 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 04:47:18.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:18.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:18.964 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:18.974 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:18.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:18.974 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:18.974 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:18.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:47:18.974 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:18.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) start.
17-03-18 04:47:19.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:19.164 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:19.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36954 150' command took 2 ms to send, 1360 ms to get response, and 1365 ms overall
17-03-18 04:47:19.164 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168900
17-03-18 04:47:19.164 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16890 mm
17-03-18 04:47:19.164 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:19.164 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:47:19.164 -07 000000606 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 04:47:19.164 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 36896, sync = True, waitForSettling = False)
17-03-18 04:47:19.164 -07 000000467 INF: Z Motor: Moving to -0.168899 mm, started at -0.168370 mm, distance = -0.53 um
17-03-18 04:47:19.164 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:19.164 -07 000000502 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:47:19.174 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:19.174 -07 000000606 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:19.174 -07 000000606 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:19.174 -07 000000606 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:47:19.174 -07 000000467 INF: FPGA: Xmit ZDACW 36896\n [Z Motor]
17-03-18 04:47:19.174 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:47:19.184 -07 000000467 INF: FPGA: 'ZDACW 36896' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:47:19.184 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:19.194 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:19.194 -07 000000424 INF: FPGA: Recv ZDACR 36896
17-03-18 04:47:19.204 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:19.204 -07 000000467 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 04:47:19.354 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:47:19.354 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:47:19.354 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:19.354 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:47:19.354 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:47:19.354 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:19.354 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:19.354 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:47:19.354 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:19.364 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:47:19.554 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:47:19.554 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:47:19.604 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:19.614 -07 000000501 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:47:19.614 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:47:19.614 -07 000000606 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:19.614 -07 000000606 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:47:19.614 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-18 04:47:20.564 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:20.564 -07 000000474 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:47:20.574 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:20.574 -07 000000606 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:20.604 -07 000000606 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:20.604 -07 000000606 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:20.604 -07 000000606 INF: Y Motor: Moved to 69.0259 after 1434 ms (table move)
17-03-18 04:47:20.604 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168899 mm (DAC = 36896)
17-03-18 04:47:20.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.604 -07 000000581 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:47:20.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:20.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.614 -07 000000618 INF: FPGA: Recv ZSGSRD 35587
17-03-18 04:47:20.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35578
17-03-18 04:47:20.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.634 -07 000000447 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:47:20.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.644 -07 000000581 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:47:20.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35581
17-03-18 04:47:20.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.664 -07 000000467 INF: FPGA: Recv ZSGSRD 35586
17-03-18 04:47:20.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.674 -07 000000625 INF: FPGA: Recv ZSGSRD 35583
17-03-18 04:47:20.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.684 -07 000000501 INF: FPGA: Recv ZSGSRD 35584
17-03-18 04:47:20.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.694 -07 000000569 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:47:20.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:20.704 -07 000000479 INF: FPGA: Recv ZPIEZORD 31339
17-03-18 04:47:20.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.714 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.4 V.
17-03-18 04:47:20.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35580 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35580 (-168.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35573 (-168.0 uncal um), Max = 35587 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:47:20.714 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35580, posNoise = 7, negNoise = 7
17-03-18 04:47:20.714 -07 000000610 INF: Z Motor: After move to -0.168899, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:20.714 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-18 04:47:20.714 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:20.764 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 04:47:20.764 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:20.764 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.16889682001499. ----------
17-03-18 04:47:20.764 -07 000000610 INF: Cycle	129	Tile	12	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:20.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36720, sync = True, waitForSettling = True)
17-03-18 04:47:20.764 -07 000000610 INF: Z Motor: Moving to -0.168093 mm, started at -0.168897 mm, distance = 0.80 um
17-03-18 04:47:20.764 -07 000000610 INF: FPGA: Xmit ZDACW 36720\n [Z Motor]
17-03-18 04:47:20.764 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:47:20.774 -07 000000610 INF: FPGA: 'ZDACW 36720' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:20.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:20.774 -07 000000606 INF: FPGA: Recv ZDACR 36720
17-03-18 04:47:20.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:20.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.934 -07 000000626 INF: FPGA: Recv ZSGSRD 35453
17-03-18 04:47:20.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:20.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.944 -07 000000479 INF: FPGA: Recv ZSGSRD 35458
17-03-18 04:47:20.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.954 -07 000000625 INF: FPGA: Recv ZSGSRD 35454
17-03-18 04:47:20.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.964 -07 000000424 INF: FPGA: Recv ZSGSRD 35454
17-03-18 04:47:20.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.974 -07 000000569 INF: FPGA: Recv ZSGSRD 35462
17-03-18 04:47:20.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.984 -07 000000618 INF: FPGA: Recv ZSGSRD 35458
17-03-18 04:47:20.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:20.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:20.994 -07 000000512 INF: FPGA: Recv ZSGSRD 35459
17-03-18 04:47:21.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:21.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:21.004 -07 000000606 INF: FPGA: Recv ZSGSRD 35456
17-03-18 04:47:21.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:21.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:21.014 -07 000000581 INF: FPGA: Recv ZSGSRD 35455
17-03-18 04:47:21.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:21.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:21.024 -07 000000467 INF: FPGA: Recv ZSGSRD 35455
17-03-18 04:47:21.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:21.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:21.034 -07 000000502 INF: FPGA: Recv ZPIEZORD 31171
17-03-18 04:47:21.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:21.044 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 04:47:21.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35456 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35456 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35453 (-167.2 uncal um), Max = 35462 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:47:21.044 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35456, posNoise = 6, negNoise = 3
17-03-18 04:47:21.044 -07 000000610 INF: Z Motor: After move to -0.168093, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:21.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:47:21.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:21.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:21.044 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:21.044 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:21.044 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:21.044 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:21.044 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:21.044 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:21.044 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:21.044 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:21.044 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:21.044 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:21.044 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:47:21.054 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:21.054 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:21.054 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:21.064 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:47:21.064 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:47:21.064 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:47:21.064 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:47:21.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36896 150\n [Camera]
17-03-18 04:47:21.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:21.694 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:21.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:21.694 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:21.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:21.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:21.694 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:21.694 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:21.704 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:47:21.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:21.704 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:21.704 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:47:21.884 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36896 811
17-03-18 04:47:22.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:22.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:47:22.074 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:47:22.074 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:22.074 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:47:22.074 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:47:22.074 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:22.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:22.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:47:22.084 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:22.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:47:22.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:22.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:22.244 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:22.244 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:22.244 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:47:22.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:22.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:22.244 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:22.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:22.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:22.434 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:22.434 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:22.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36896 150' command took 2 ms to send, 1353 ms to get response, and 1365 ms overall
17-03-18 04:47:22.434 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168471
17-03-18 04:47:22.434 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16847 mm
17-03-18 04:47:22.434 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:22.434 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:47:22.434 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 36802, sync = True, waitForSettling = False)
17-03-18 04:47:22.434 -07 000000480 INF: Z Motor: Moving to -0.168469 mm, started at -0.168100 mm, distance = -0.37 um
17-03-18 04:47:22.434 -07 000000480 INF: FPGA: Xmit ZDACW 36802\n [Z Motor]
17-03-18 04:47:22.434 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:47:22.444 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:22.444 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:47:22.444 -07 000000480 INF: FPGA: 'ZDACW 36802' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:47:22.444 -07 000000625 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:47:22.454 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:22.454 -07 000000569 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:22.454 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:22.454 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:22.454 -07 000000569 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:47:22.454 -07 000000606 INF: FPGA: Recv ZDACR 36802
17-03-18 04:47:22.464 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:47:22.464 -07 000000480 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 04:47:22.464 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:22.624 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:47:22.624 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:47:22.624 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:22.624 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:22.624 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:47:22.734 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:47:22.734 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:47:22.734 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:22.744 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:22.744 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 04:47:22.834 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:47:22.834 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:47:22.884 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:22.894 -07 000000474 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:47:22.894 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:22.894 -07 000000569 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:22.894 -07 000000569 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:47:22.894 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.847 mm, average velocity = 2.182 mm/sec
17-03-18 04:47:22.994 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.997626,
17-03-18 04:47:23.844 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:23.844 -07 000000512 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:47:23.854 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:23.854 -07 000000569 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:23.884 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:23.884 -07 000000569 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:23.884 -07 000000569 INF: Y Motor: Moved to 69.8618 after 1443 ms (table move)
17-03-18 04:47:23.884 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168469 mm (DAC = 36802)
17-03-18 04:47:23.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.884 -07 000000424 INF: FPGA: Recv ZSGSRD 35511
17-03-18 04:47:23.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:23.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.894 -07 000000618 INF: FPGA: Recv ZSGSRD 35516
17-03-18 04:47:23.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.904 -07 000000382 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:47:23.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.914 -07 000000467 INF: FPGA: Recv ZSGSRD 35509
17-03-18 04:47:23.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.924 -07 000000625 INF: FPGA: Recv ZSGSRD 35514
17-03-18 04:47:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.934 -07 000000480 INF: FPGA: Recv ZSGSRD 35516
17-03-18 04:47:23.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.944 -07 000000474 INF: FPGA: Recv ZSGSRD 35512
17-03-18 04:47:23.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.954 -07 000000502 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:47:23.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.964 -07 000000424 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:47:23.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:23.974 -07 000000618 INF: FPGA: Recv ZSGSRD 35518
17-03-18 04:47:23.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:23.984 -07 000000479 INF: FPGA: Recv ZPIEZORD 31296
17-03-18 04:47:23.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:23.994 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.3 V.
17-03-18 04:47:23.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35515 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35509 (-167.6 uncal um), Max = 35520 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:23.994 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35515, posNoise = 5, negNoise = 6
17-03-18 04:47:23.994 -07 000000610 INF: Z Motor: After move to -0.168469, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:23.994 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-18 04:47:23.994 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:24.044 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 04:47:24.044 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:24.044 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.168479246225775. ----------
17-03-18 04:47:24.044 -07 000000610 INF: Cycle	129	Tile	13	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:24.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36626, sync = True, waitForSettling = True)
17-03-18 04:47:24.044 -07 000000610 INF: Z Motor: Moving to -0.167663 mm, started at -0.168479 mm, distance = 0.82 um
17-03-18 04:47:24.044 -07 000000610 INF: FPGA: Xmit ZDACW 36626\n [Z Motor]
17-03-18 04:47:24.044 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:47:24.054 -07 000000610 INF: FPGA: 'ZDACW 36626' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:47:24.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:24.054 -07 000000569 INF: FPGA: Recv ZDACR 36626
17-03-18 04:47:24.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:24.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.214 -07 000000480 INF: FPGA: Recv ZSGSRD 35395
17-03-18 04:47:24.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:24.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.224 -07 000000467 INF: FPGA: Recv ZSGSRD 35389
17-03-18 04:47:24.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.234 -07 000000625 INF: FPGA: Recv ZSGSRD 35386
17-03-18 04:47:24.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35385
17-03-18 04:47:24.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.254 -07 000000480 INF: FPGA: Recv ZSGSRD 35392
17-03-18 04:47:24.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.264 -07 000000606 INF: FPGA: Recv ZSGSRD 35395
17-03-18 04:47:24.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.274 -07 000000581 INF: FPGA: Recv ZSGSRD 35387
17-03-18 04:47:24.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.284 -07 000000512 INF: FPGA: Recv ZSGSRD 35391
17-03-18 04:47:24.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.294 -07 000000467 INF: FPGA: Recv ZSGSRD 35395
17-03-18 04:47:24.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:24.304 -07 000000625 INF: FPGA: Recv ZSGSRD 35386
17-03-18 04:47:24.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:24.314 -07 000000382 INF: FPGA: Recv ZPIEZORD 31101
17-03-18 04:47:24.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:24.324 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.4 V.
17-03-18 04:47:24.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35390 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35390 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35385 (-166.8 uncal um), Max = 35395 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:47:24.324 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35390, posNoise = 5, negNoise = 5
17-03-18 04:47:24.324 -07 000000610 INF: Z Motor: After move to -0.167663, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:24.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 04:47:24.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:24.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:24.334 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:24.334 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:24.334 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:24.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:24.334 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:24.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:24.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:24.334 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:24.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:24.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:24.344 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:24.344 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:24.344 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:24.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:24.354 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:47:24.354 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:47:24.354 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:47:24.354 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:47:24.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36802 150\n [Camera]
17-03-18 04:47:24.554 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:24.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:24.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:24.984 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:24.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:24.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:24.984 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:24.984 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:24.984 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:47:24.994 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:24.994 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) start.
17-03-18 04:47:25.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36802 811
17-03-18 04:47:25.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:25.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:47:25.364 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:47:25.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:25.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 04:47:25.364 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:47:25.364 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:25.364 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:25.364 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:47:25.364 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:25.374 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:47:25.534 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:25.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:25.534 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:25.534 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:25.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:25.534 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:25.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:25.534 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:47:25.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:25.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:47:25.724 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:25.724 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:25.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36802 150' command took 2 ms to send, 1353 ms to get response, and 1365 ms overall
17-03-18 04:47:25.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:25.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167676219708055. ------
17-03-18 04:47:25.724 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:25.724 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17415 mm
17-03-18 04:47:25.724 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:25.734 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:25.734 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:47:25.734 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:25.734 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38043, sync = True, waitForSettling = False)
17-03-18 04:47:25.734 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:47:25.734 -07 000000474 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 04:47:25.734 -07 000000501 INF: Z Motor: Moving to -0.174150 mm, started at -0.167676 mm, distance = -6.47 um
17-03-18 04:47:25.744 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:25.744 -07 000000626 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:47:25.754 -07 000000501 INF: FPGA: Xmit ZDACW 38043\n [Z Motor]
17-03-18 04:47:25.754 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:47:25.754 -07 000000474 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:25.754 -07 000000474 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:25.754 -07 000000474 INF: Y Motor: Moving 1345 steps-22
17-03-18 04:47:25.754 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:47:25.764 -07 000000501 INF: FPGA: 'ZDACW 38043' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:47:25.764 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:25.774 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:25.774 -07 000000424 INF: FPGA: Recv ZDACR 38043
17-03-18 04:47:25.784 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:25.784 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:47:25.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:47:25.914 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:47:25.914 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:25.914 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:25.914 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:47:25.914 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:47:25.914 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:25.924 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:25.924 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:47:25.924 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:47:25.934 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:25.934 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:47:26.134 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:47:26.134 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 386 ms overall
17-03-18 04:47:26.194 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:26.194 -07 000000447 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:47:26.204 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:26.204 -07 000000474 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:26.204 -07 000000474 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:47:26.204 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-18 04:47:26.704 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:27.154 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:27.154 -07 000000569 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:47:27.164 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.164 -07 000000474 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:27.194 -07 000000474 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:27.194 -07 000000474 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:27.194 -07 000000474 INF: Y Motor: Moved to 70.6870 after 1457 ms (table move)
17-03-18 04:47:27.194 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174150 mm (DAC = 38043)
17-03-18 04:47:27.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.194 -07 000000424 INF: FPGA: Recv ZSGSRD 36399
17-03-18 04:47:27.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:27.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.204 -07 000000447 INF: FPGA: Recv ZSGSRD 36397
17-03-18 04:47:27.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.214 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36396
17-03-18 04:47:27.224 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.224 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.224 -07 000000480 INF: FPGA: Recv ZSGSRD 36393
17-03-18 04:47:27.234 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.234 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.234 -07 000000479 INF: FPGA: Recv ZSGSRD 36407
17-03-18 04:47:27.244 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.244 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.244 -07 000000618 INF: FPGA: Recv ZSGSRD 36401
17-03-18 04:47:27.254 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.254 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.254 -07 000000501 INF: FPGA: Recv ZSGSRD 36404
17-03-18 04:47:27.264 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.264 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.264 -07 000000480 INF: FPGA: Recv ZSGSRD 36395
17-03-18 04:47:27.274 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.274 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36395
17-03-18 04:47:27.284 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.284 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:27.284 -07 000000606 INF: FPGA: Recv ZSGSRD 36399
17-03-18 04:47:27.294 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.294 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:27.294 -07 000000502 INF: FPGA: Recv ZPIEZORD 32452
17-03-18 04:47:27.304 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:27.304 -07 000000625 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.805 V. Piezo Error = -8.7 V.
17-03-18 04:47:27.304 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36399 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36398 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36393 (-173.2 uncal um), Max = 36407 (-173.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:27.304 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36399, posNoise = 8, negNoise = 6
17-03-18 04:47:27.304 -07 000000625 INF: Z Motor: After move to -0.174150, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:27.304 -07 000000625 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:47:27.304 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:27.354 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:47:27.354 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:27.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:27.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:27.354 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:27.354 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:27.354 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:27.354 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:27.354 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:27.354 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:27.364 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:27.364 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:27.374 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:47:27.374 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:47:27.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:27.414 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:27.714 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:27.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:27.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:27.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 04:47:27.764 -07 000000581 INF: FPGA: Recv @CAMSNAP 382
17-03-18 04:47:27.764 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:27.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 04:47:27.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 04:47:27.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:27.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:27.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:47:27.864 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:27.864 -07 000000606 INF: Autofocus start
17-03-18 04:47:27.864 -07 000000606 INF: MeasureProfile start
17-03-18 04:47:27.864 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:27.874 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:27.874 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:27.874 -07 000000606 INF: MeasureProfile done
17-03-18 04:47:27.874 -07 000000606 INF: X=-112  Z correction [um]=-0.6579942
17-03-18 04:47:27.874 -07 000000606 INF: Autofocus finished
17-03-18 04:47:28.074 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:28.074 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:47:28.074 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-18 04:47:28.084 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.174158249759092. ----------
17-03-18 04:47:28.084 -07 000000610 INF: Cycle	129	Tile	14	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:28.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36412, sync = True, waitForSettling = True)
17-03-18 04:47:28.084 -07 000000610 INF: Z Motor: Moving to -0.166683 mm, started at -0.174158 mm, distance = 7.47 um
17-03-18 04:47:28.094 -07 000000610 INF: FPGA: Xmit ZDACW 36412\n [Z Motor]
17-03-18 04:47:28.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:47:28.104 -07 000000610 INF: FPGA: 'ZDACW 36412' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:47:28.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:28.104 -07 000000480 INF: FPGA: Recv ZDACR 36412
17-03-18 04:47:28.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:28.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.264 -07 000000606 INF: FPGA: Recv ZSGSRD 35236
17-03-18 04:47:28.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:28.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.274 -07 000000467 INF: FPGA: Recv ZSGSRD 35241
17-03-18 04:47:28.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.284 -07 000000626 INF: FPGA: Recv ZSGSRD 35238
17-03-18 04:47:28.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.294 -07 000000447 INF: FPGA: Recv ZSGSRD 35239
17-03-18 04:47:28.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.304 -07 000000569 INF: FPGA: Recv ZSGSRD 35240
17-03-18 04:47:28.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.314 -07 000000479 INF: FPGA: Recv ZSGSRD 35234
17-03-18 04:47:28.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.324 -07 000000625 INF: FPGA: Recv ZSGSRD 35241
17-03-18 04:47:28.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.334 -07 000000382 INF: FPGA: Recv ZSGSRD 35232
17-03-18 04:47:28.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.344 -07 000000581 INF: FPGA: Recv ZSGSRD 35238
17-03-18 04:47:28.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:28.354 -07 000000618 INF: FPGA: Recv ZSGSRD 35238
17-03-18 04:47:28.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:28.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:28.374 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.983999,
17-03-18 04:47:28.374 -07 000000625 INF: FPGA: Recv ZPIEZORD 30920
17-03-18 04:47:28.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:28.384 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.5 V.
17-03-18 04:47:28.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35238 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35238 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35232 (-165.8 uncal um), Max = 35241 (-165.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:28.384 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35238, posNoise = 3, negNoise = 6
17-03-18 04:47:28.384 -07 000000610 INF: Z Motor: After move to -0.166683, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:28.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 295 ms)
17-03-18 04:47:28.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:28.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:28.384 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:28.384 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:28.384 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:28.384 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:28.384 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:28.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:28.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:28.384 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:28.384 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:28.384 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:28.394 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:28.394 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:28.394 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:47:28.394 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:28.404 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:47:28.404 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:47:28.404 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:47:28.404 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:28.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36589 150\n [Camera]
17-03-18 04:47:28.614 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:29.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:29.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:29.044 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:29.054 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:29.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:29.054 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:29.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:47:29.054 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:29.174 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:29.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:29.234 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36589 811
17-03-18 04:47:29.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:29.434 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:47:29.434 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:47:29.434 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:29.434 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:29.434 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:47:29.544 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:47:29.544 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:47:29.544 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:29.544 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:29.554 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 04:47:29.594 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:29.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:29.594 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:29.594 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:29.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:29.594 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:29.604 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:29.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:47:29.604 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:29.604 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) start.
17-03-18 04:47:29.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:47:29.784 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:29.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36589 150' command took 2 ms to send, 1355 ms to get response, and 1380 ms overall
17-03-18 04:47:29.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:29.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68701171875, Z-Position -0.166699739462508. ------
17-03-18 04:47:29.794 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:29.794 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17337 mm
17-03-18 04:47:29.794 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:29.794 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:29.794 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:47:29.794 -07 000000581 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 04:47:29.794 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37873, sync = True, waitForSettling = False)
17-03-18 04:47:29.794 -07 000000618 INF: Z Motor: Moving to -0.173371 mm, started at -0.166700 mm, distance = -6.67 um
17-03-18 04:47:29.804 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:29.804 -07 000000618 INF: FPGA: Xmit ZDACW 37873\n [Z Motor]
17-03-18 04:47:29.804 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:47:29.814 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:29.814 -07 000000618 INF: FPGA: 'ZDACW 37873' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:47:29.814 -07 000000467 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:47:29.824 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:29.824 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:47:29.824 -07 000000581 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:29.824 -07 000000581 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:29.824 -07 000000581 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:47:29.834 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:29.834 -07 000000479 INF: FPGA: Recv ZDACR 37873
17-03-18 04:47:29.844 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:29.844 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:47:29.844 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:29.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:47:29.984 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:47:29.984 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:29.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:47:29.984 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:47:29.984 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:29.984 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:29.984 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:29.984 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:47:29.994 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:47:30.024 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:30.024 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 04:47:30.214 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:47:30.214 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:47:30.264 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:30.274 -07 000000502 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:47:30.274 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:30.274 -07 000000581 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:30.274 -07 000000581 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:47:30.274 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.152 mm/sec
17-03-18 04:47:31.224 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:31.224 -07 000000455 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:47:31.234 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.234 -07 000000581 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:31.264 -07 000000581 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:31.264 -07 000000581 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:31.264 -07 000000581 INF: Y Motor: Moved to 71.5176 after 1463 ms (table move)
17-03-18 04:47:31.264 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173371 mm (DAC = 37873)
17-03-18 04:47:31.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36282
17-03-18 04:47:31.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:31.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.274 -07 000000501 INF: FPGA: Recv ZSGSRD 36277
17-03-18 04:47:31.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.284 -07 000000479 INF: FPGA: Recv ZSGSRD 36281
17-03-18 04:47:31.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36280
17-03-18 04:47:31.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.304 -07 000000474 INF: FPGA: Recv ZSGSRD 36278
17-03-18 04:47:31.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.314 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.314 -07 000000480 INF: FPGA: Recv ZSGSRD 36277
17-03-18 04:47:31.324 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.324 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.324 -07 000000618 INF: FPGA: Recv ZSGSRD 36275
17-03-18 04:47:31.334 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.334 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.334 -07 000000447 INF: FPGA: Recv ZSGSRD 36274
17-03-18 04:47:31.344 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.344 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.344 -07 000000455 INF: FPGA: Recv ZSGSRD 36279
17-03-18 04:47:31.354 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.354 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:31.354 -07 000000479 INF: FPGA: Recv ZSGSRD 36278
17-03-18 04:47:31.364 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.364 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:31.364 -07 000000626 INF: FPGA: Recv ZPIEZORD 32304
17-03-18 04:47:31.374 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:31.374 -07 000000606 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.8 V.
17-03-18 04:47:31.374 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36278 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36278 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36274 (-172.5 uncal um), Max = 36282 (-172.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:47:31.374 -07 000000606 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36278, posNoise = 4, negNoise = 4
17-03-18 04:47:31.374 -07 000000606 INF: Z Motor: After move to -0.173371, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:31.374 -07 000000606 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:47:31.374 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:31.424 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 04:47:31.424 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:31.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:31.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:31.424 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:31.424 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:31.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:31.424 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:31.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:31.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:31.434 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:31.434 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:31.444 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:47:31.444 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:47:31.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:31.494 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:31.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:31.794 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:31.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:31.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:31.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640366232, 0x0, 559484976) start.
17-03-18 04:47:31.834 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:31.834 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:31.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 04:47:31.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640366232, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:47:31.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:31.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:31.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:47:31.934 -07 000000502 INF: Autofocus start
17-03-18 04:47:31.934 -07 000000502 INF: MeasureProfile start
17-03-18 04:47:31.934 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:31.934 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:31.944 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:31.944 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:31.944 -07 000000502 INF: MeasureProfile done
17-03-18 04:47:31.944 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:47:31.944 -07 000000502 INF: Autofocus finished
17-03-18 04:47:32.144 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:32.144 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:47:32.144 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173380920089939. ----------
17-03-18 04:47:32.144 -07 000000610 INF: Cycle	129	Tile	15	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:32.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36424, sync = True, waitForSettling = True)
17-03-18 04:47:32.154 -07 000000610 INF: Z Motor: Moving to -0.166738 mm, started at -0.173381 mm, distance = 6.64 um
17-03-18 04:47:32.154 -07 000000610 INF: FPGA: Xmit ZDACW 36424\n [Z Motor]
17-03-18 04:47:32.154 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:47:32.164 -07 000000610 INF: FPGA: 'ZDACW 36424' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:32.164 -07 000000474 INF: FPGA: Recv ZDACR 36424
17-03-18 04:47:32.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:32.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.324 -07 000000480 INF: FPGA: Recv ZSGSRD 35248
17-03-18 04:47:32.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:32.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35246
17-03-18 04:47:32.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.344 -07 000000512 INF: FPGA: Recv ZSGSRD 35242
17-03-18 04:47:32.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.354 -07 000000447 INF: FPGA: Recv ZSGSRD 35240
17-03-18 04:47:32.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35252
17-03-18 04:47:32.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.374 -07 000000502 INF: FPGA: Recv ZSGSRD 35254
17-03-18 04:47:32.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.384 -07 000000606 INF: FPGA: Recv ZSGSRD 35246
17-03-18 04:47:32.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.394 -07 000000455 INF: FPGA: Recv ZSGSRD 35243
17-03-18 04:47:32.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.404 -07 000000447 INF: FPGA: Recv ZSGSRD 35242
17-03-18 04:47:32.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:32.414 -07 000000501 INF: FPGA: Recv ZSGSRD 35250
17-03-18 04:47:32.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:32.424 -07 000000569 INF: FPGA: Recv ZPIEZORD 30940
17-03-18 04:47:32.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:32.434 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.5 V.
17-03-18 04:47:32.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35246 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35246 (-165.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35240 (-165.8 uncal um), Max = 35254 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:47:32.434 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35246, posNoise = 8, negNoise = 6
17-03-18 04:47:32.434 -07 000000610 INF: Z Motor: After move to -0.166738, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:32.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:47:32.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:32.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:32.434 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:32.434 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:32.434 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:32.434 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:32.434 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:32.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:32.434 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:32.434 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:32.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:32.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:32.434 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:32.444 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:32.444 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:32.444 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:32.454 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:47:32.454 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:47:32.454 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:47:32.454 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:32.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36601 150\n [Camera]
17-03-18 04:47:32.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:33.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:33.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:33.084 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:33.084 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:33.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:33.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:33.204 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:33.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:47:33.204 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:33.204 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:33.274 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36601 811
17-03-18 04:47:33.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:47:33.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:47:33.574 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:47:33.574 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:33.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:47:33.574 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:47:33.574 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:33.574 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:33.574 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-18 04:47:33.584 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:33.584 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 04:47:33.634 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:33.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:33.634 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:33.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:33.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:33.634 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:33.634 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:33.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:47:33.644 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:33.644 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) start.
17-03-18 04:47:33.824 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:33.824 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:33.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36601 150' command took 2 ms to send, 1362 ms to get response, and 1367 ms overall
17-03-18 04:47:33.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:33.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166751133159642. ------
17-03-18 04:47:33.824 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17327 mm
17-03-18 04:47:33.824 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:33.834 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:33.834 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.997626,
17-03-18 04:47:33.834 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:47:33.834 -07 000000461 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:47:33.834 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37851, sync = True, waitForSettling = False)
17-03-18 04:47:33.834 -07 000000501 INF: Z Motor: Moving to -0.173271 mm, started at -0.166751 mm, distance = -6.52 um
17-03-18 04:47:33.834 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:33.844 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:33.844 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:33.844 -07 000000625 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:47:33.854 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:47:33.854 -07 000000461 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:33.854 -07 000000461 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:33.854 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:47:33.864 -07 000000501 INF: FPGA: Xmit ZDACW 37851\n [Z Motor]
17-03-18 04:47:33.864 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:47:33.874 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:33.874 -07 000000501 INF: FPGA: 'ZDACW 37851' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 04:47:33.884 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:33.904 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:33.904 -07 000000480 INF: FPGA: Recv ZDACR 37851
17-03-18 04:47:33.914 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:47:33.914 -07 000000501 INF: Z Motor: MoveAbsStepped took 77 ms (did NOT wait for settling yet))
17-03-18 04:47:34.014 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2604943968, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:47:34.014 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:47:34.014 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:34.024 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:34.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:47:34.024 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:47:34.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:34.024 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:34.024 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:47:34.024 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:47:34.074 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:34.074 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:47:34.264 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:47:34.264 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 411 ms overall
17-03-18 04:47:34.314 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:34.324 -07 000000474 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:47:34.324 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:47:34.324 -07 000000461 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:34.324 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:47:34.324 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 411 ms, distance = 0.845 mm, average velocity = 2.056 mm/sec
17-03-18 04:47:35.274 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:35.274 -07 000000606 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:47:35.284 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.284 -07 000000461 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:35.314 -07 000000461 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:35.314 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:35.314 -07 000000461 INF: Y Motor: Moved to 72.3481 after 1480 ms (table move)
17-03-18 04:47:35.314 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173271 mm (DAC = 37851)
17-03-18 04:47:35.314 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.314 -07 000000501 INF: FPGA: Recv ZSGSRD 36267
17-03-18 04:47:35.324 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:35.324 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.324 -07 000000512 INF: FPGA: Recv ZSGSRD 36265
17-03-18 04:47:35.334 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.334 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.334 -07 000000382 INF: FPGA: Recv ZSGSRD 36256
17-03-18 04:47:35.344 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.344 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.344 -07 000000626 INF: FPGA: Recv ZSGSRD 36254
17-03-18 04:47:35.354 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.354 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.354 -07 000000625 INF: FPGA: Recv ZSGSRD 36267
17-03-18 04:47:35.364 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.364 -07 000000512 INF: FPGA: Recv ZSGSRD 36259
17-03-18 04:47:35.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.374 -07 000000501 INF: FPGA: Recv ZSGSRD 36269
17-03-18 04:47:35.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.384 -07 000000618 INF: FPGA: Recv ZSGSRD 36262
17-03-18 04:47:35.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.394 -07 000000625 INF: FPGA: Recv ZSGSRD 36261
17-03-18 04:47:35.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:35.404 -07 000000502 INF: FPGA: Recv ZSGSRD 36266
17-03-18 04:47:35.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.414 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:35.414 -07 000000447 INF: FPGA: Recv ZPIEZORD 32271
17-03-18 04:47:35.424 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:35.424 -07 000000424 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.8 V.
17-03-18 04:47:35.424 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36263 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36264 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36254 (-172.3 uncal um), Max = 36269 (-172.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:47:35.424 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36263, posNoise = 6, negNoise = 9
17-03-18 04:47:35.424 -07 000000424 INF: Z Motor: After move to -0.173271, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:35.424 -07 000000424 INF: Z Motor: Settle wait time = 1483 ms, measure time = 104 ms (allowed 150 ms), total time = 1587 ms
17-03-18 04:47:35.424 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:35.474 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 04:47:35.474 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:35.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:35.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:35.474 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:35.474 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:35.474 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:35.474 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:35.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:35.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:35.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:35.484 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:35.494 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:47:35.494 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:47:35.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:35.534 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:35.834 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:35.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:35.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:35.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640366232, 0x0, 559484976) start.
17-03-18 04:47:35.874 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:35.874 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:35.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:47:35.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2640366232, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:47:35.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:35.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:35.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:47:35.974 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:35.974 -07 000000618 INF: Autofocus start
17-03-18 04:47:35.974 -07 000000618 INF: MeasureProfile start
17-03-18 04:47:35.974 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:35.984 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:35.984 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:35.984 -07 000000618 INF: MeasureProfile done
17-03-18 04:47:35.984 -07 000000618 INF: X=-32  Z correction [um]=-0.2344
17-03-18 04:47:35.984 -07 000000618 INF: Autofocus finished
17-03-18 04:47:36.184 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:36.184 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:47:36.184 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173284556907813. ----------
17-03-18 04:47:36.184 -07 000000610 INF: Cycle	129	Tile	16	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:36.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36312, sync = True, waitForSettling = True)
17-03-18 04:47:36.194 -07 000000610 INF: Z Motor: Moving to -0.166226 mm, started at -0.173285 mm, distance = 7.06 um
17-03-18 04:47:36.194 -07 000000610 INF: FPGA: Xmit ZDACW 36312\n [Z Motor]
17-03-18 04:47:36.194 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:47:36.204 -07 000000610 INF: FPGA: 'ZDACW 36312' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:36.204 -07 000000461 INF: FPGA: Recv ZDACR 36312
17-03-18 04:47:36.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:36.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.364 -07 000000455 INF: FPGA: Recv ZSGSRD 35167
17-03-18 04:47:36.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:36.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.374 -07 000000618 INF: FPGA: Recv ZSGSRD 35172
17-03-18 04:47:36.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35164
17-03-18 04:47:36.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.394 -07 000000625 INF: FPGA: Recv ZSGSRD 35159
17-03-18 04:47:36.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35175
17-03-18 04:47:36.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35167
17-03-18 04:47:36.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.424 -07 000000569 INF: FPGA: Recv ZSGSRD 35163
17-03-18 04:47:36.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.434 -07 000000625 INF: FPGA: Recv ZSGSRD 35162
17-03-18 04:47:36.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35161
17-03-18 04:47:36.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:36.454 -07 000000581 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:47:36.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:36.464 -07 000000455 INF: FPGA: Recv ZPIEZORD 30800
17-03-18 04:47:36.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:36.474 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.6 V.
17-03-18 04:47:36.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35166 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35166 (-165.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35159 (-165.3 uncal um), Max = 35175 (-165.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:47:36.474 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35166, posNoise = 9, negNoise = 7
17-03-18 04:47:36.474 -07 000000610 INF: Z Motor: After move to -0.166226, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:36.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:47:36.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:36.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:36.474 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:36.474 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:36.474 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:36.474 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:36.474 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:36.474 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:36.474 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:47:36.474 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:36.474 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:36.474 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:36.484 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:36.484 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:36.484 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:36.484 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:36.494 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:47:36.494 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:47:36.494 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:47:36.494 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:47:36.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36489 150\n [Camera]
17-03-18 04:47:36.694 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:36.704 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:36.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:37.124 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:37.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:37.124 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:37.124 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:37.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:37.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:37.124 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:37.124 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:47:37.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:37.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:47:37.314 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36489 811
17-03-18 04:47:37.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 962
17-03-18 04:47:37.504 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:47:37.504 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:47:37.504 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:37.504 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:37.514 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:47:37.514 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:47:37.514 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:37.514 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:47:37.514 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:37.514 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:47:37.664 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:37.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:37.674 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:37.674 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:37.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:37.674 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:37.784 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:37.784 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:47:37.784 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:37.784 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:37.864 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:47:37.864 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:37.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36489 150' command took 2 ms to send, 1364 ms to get response, and 1369 ms overall
17-03-18 04:47:37.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:37.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166237196188301. ------
17-03-18 04:47:37.864 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:37.864 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17270 mm
17-03-18 04:47:37.864 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:37.874 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:47:37.874 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:47:37.874 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37727, sync = True, waitForSettling = False)
17-03-18 04:47:37.874 -07 000000461 INF: Z Motor: Moving to -0.172703 mm, started at -0.166237 mm, distance = -6.47 um
17-03-18 04:47:37.874 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:37.874 -07 000000461 INF: FPGA: Xmit ZDACW 37727\n [Z Motor]
17-03-18 04:47:37.874 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 04:47:37.874 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:47:37.884 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:37.884 -07 000000461 INF: FPGA: 'ZDACW 37727' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:37.884 -07 000000501 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:47:37.894 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:37.894 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:47:37.894 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:37.894 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:37.894 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:47:37.904 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:37.904 -07 000000569 INF: FPGA: Recv ZDACR 37727
17-03-18 04:47:37.914 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:37.914 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:37.914 -07 000000461 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:47:38.094 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:38.094 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 04:47:38.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:47:38.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:47:38.184 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:38.184 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:47:38.184 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:47:38.184 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:38.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:38.194 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 04:47:38.194 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:38.194 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 04:47:38.284 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:47:38.284 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:47:38.334 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:38.344 -07 000000625 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:47:38.344 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:47:38.344 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:38.344 -07 000000512 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:47:38.344 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 04:47:39.254 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.997626,
17-03-18 04:47:39.294 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:39.294 -07 000000501 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:47:39.304 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:39.304 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:39.334 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:39.334 -07 000000512 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:39.334 -07 000000512 INF: Y Motor: Moved to 73.1748 after 1457 ms (table move)
17-03-18 04:47:39.334 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172703 mm (DAC = 37727)
17-03-18 04:47:39.334 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.334 -07 000000625 INF: FPGA: Recv ZSGSRD 36179
17-03-18 04:47:39.344 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:39.344 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.344 -07 000000618 INF: FPGA: Recv ZSGSRD 36172
17-03-18 04:47:39.354 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.354 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.354 -07 000000480 INF: FPGA: Recv ZSGSRD 36175
17-03-18 04:47:39.364 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.364 -07 000000447 INF: FPGA: Recv ZSGSRD 36177
17-03-18 04:47:39.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.374 -07 000000382 INF: FPGA: Recv ZSGSRD 36169
17-03-18 04:47:39.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.384 -07 000000625 INF: FPGA: Recv ZSGSRD 36172
17-03-18 04:47:39.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.394 -07 000000480 INF: FPGA: Recv ZSGSRD 36183
17-03-18 04:47:39.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.404 -07 000000581 INF: FPGA: Recv ZSGSRD 36173
17-03-18 04:47:39.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.414 -07 000000626 INF: FPGA: Recv ZSGSRD 36169
17-03-18 04:47:39.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:39.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36173
17-03-18 04:47:39.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.434 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:39.434 -07 000000501 INF: FPGA: Recv ZPIEZORD 32175
17-03-18 04:47:39.444 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:39.444 -07 000000455 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.8 V.
17-03-18 04:47:39.444 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36174 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36173 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36169 (-171.8 uncal um), Max = 36183 (-171.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:47:39.444 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36174, posNoise = 9, negNoise = 5
17-03-18 04:47:39.444 -07 000000455 INF: Z Motor: After move to -0.172703, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:39.444 -07 000000455 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 04:47:39.444 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:39.494 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:47:39.494 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:39.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:39.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:39.494 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:39.494 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:39.494 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:39.494 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:39.494 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:39.494 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:39.504 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:39.504 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:39.514 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:47:39.514 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:47:39.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:39.564 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:47:39.864 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:47:39.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:47:39.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:39.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 04:47:39.904 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:39.904 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:39.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:47:39.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:47:39.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:39.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:39.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:47:40.004 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:40.004 -07 000000501 INF: Autofocus start
17-03-18 04:47:40.004 -07 000000501 INF: MeasureProfile start
17-03-18 04:47:40.004 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:40.014 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:40.014 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:40.014 -07 000000501 INF: MeasureProfile done
17-03-18 04:47:40.014 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:47:40.014 -07 000000501 INF: Autofocus finished
17-03-18 04:47:40.214 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:40.214 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:47:40.214 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172712802027196. ----------
17-03-18 04:47:40.214 -07 000000610 INF: Cycle	129	Tile	17	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:40.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36242, sync = True, waitForSettling = True)
17-03-18 04:47:40.224 -07 000000610 INF: Z Motor: Moving to -0.165905 mm, started at -0.172713 mm, distance = 6.81 um
17-03-18 04:47:40.224 -07 000000610 INF: FPGA: Xmit ZDACW 36242\n [Z Motor]
17-03-18 04:47:40.224 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:47:40.234 -07 000000610 INF: FPGA: 'ZDACW 36242' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:47:40.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:40.234 -07 000000447 INF: FPGA: Recv ZDACR 36242
17-03-18 04:47:40.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:40.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.394 -07 000000581 INF: FPGA: Recv ZSGSRD 35120
17-03-18 04:47:40.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35114
17-03-18 04:47:40.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.414 -07 000000569 INF: FPGA: Recv ZSGSRD 35119
17-03-18 04:47:40.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.424 -07 000000382 INF: FPGA: Recv ZSGSRD 35116
17-03-18 04:47:40.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.434 -07 000000479 INF: FPGA: Recv ZSGSRD 35113
17-03-18 04:47:40.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35118
17-03-18 04:47:40.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.454 -07 000000625 INF: FPGA: Recv ZSGSRD 35117
17-03-18 04:47:40.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35116
17-03-18 04:47:40.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.474 -07 000000618 INF: FPGA: Recv ZSGSRD 35115
17-03-18 04:47:40.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:40.484 -07 000000447 INF: FPGA: Recv ZSGSRD 35116
17-03-18 04:47:40.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:40.494 -07 000000626 INF: FPGA: Recv ZPIEZORD 30776
17-03-18 04:47:40.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:40.504 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.6 V.
17-03-18 04:47:40.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35116 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35116 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35113 (-165.0 uncal um), Max = 35120 (-165.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:47:40.504 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35116, posNoise = 4, negNoise = 3
17-03-18 04:47:40.504 -07 000000610 INF: Z Motor: After move to -0.165905, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:40.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:47:40.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:40.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:40.504 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:40.504 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:40.504 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:40.504 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:40.504 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:40.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:40.504 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:47:40.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:40.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:40.504 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:40.514 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:40.514 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:40.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:47:40.514 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:40.524 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:47:40.524 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:47:40.524 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:47:40.524 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:47:40.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36419 150\n [Camera]
17-03-18 04:47:40.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:41.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:41.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:41.154 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:41.154 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:41.154 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:47:41.154 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:41.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:41.154 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:41.154 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:41.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:47:41.344 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36419 811
17-03-18 04:47:41.494 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:41.524 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:47:41.524 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:47:41.524 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:41.534 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:47:41.534 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:47:41.534 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:41.534 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:41.534 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:47:41.534 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:47:41.544 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:47:41.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:41.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:41.694 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:41.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:41.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:41.704 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:41.814 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:41.814 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:41.814 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:47:41.814 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:41.814 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:47:41.884 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:47:41.884 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:41.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36419 150' command took 2 ms to send, 1358 ms to get response, and 1365 ms overall
17-03-18 04:47:41.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:41.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.165915985581213. ------
17-03-18 04:47:41.894 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:41.894 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17172 mm
17-03-18 04:47:41.894 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:41.894 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37513, sync = True, waitForSettling = False)
17-03-18 04:47:41.894 -07 000000382 INF: Z Motor: Moving to -0.171724 mm, started at -0.165916 mm, distance = -5.81 um
17-03-18 04:47:41.894 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:47:41.894 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:47:41.894 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:41.904 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:41.904 -07 000000382 INF: FPGA: Xmit ZDACW 37513\n [Z Motor]
17-03-18 04:47:41.904 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:47:41.914 -07 000000382 INF: FPGA: 'ZDACW 37513' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:47:41.914 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:41.914 -07 000000501 INF: FPGA: Recv ZDACR 37513
17-03-18 04:47:41.924 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:41.924 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:41.924 -07 000000382 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 04:47:41.924 -07 000000447 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:47:41.934 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:41.934 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 04:47:41.934 -07 000000480 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:41.934 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:41.934 -07 000000480 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:47:41.944 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:42.134 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:42.134 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 04:47:42.214 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:47:42.214 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:47:42.214 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:42.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:47:42.214 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:47:42.214 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:42.224 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:42.224 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:42.224 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 04:47:42.224 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 04:47:42.314 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:47:42.314 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:47:42.364 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:42.364 -07 000000618 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:47:42.374 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:42.374 -07 000000480 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:42.374 -07 000000480 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:47:42.374 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.848 mm, average velocity = 2.191 mm/sec
17-03-18 04:47:43.324 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:43.324 -07 000000618 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:47:43.334 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:43.334 -07 000000480 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:43.364 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:43.364 -07 000000480 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:43.364 -07 000000480 INF: Y Motor: Moved to 74.0068 after 1464 ms (table move)
17-03-18 04:47:43.364 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171724 mm (DAC = 37513)
17-03-18 04:47:43.364 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.364 -07 000000461 INF: FPGA: Recv ZSGSRD 36028
17-03-18 04:47:43.374 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:43.374 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.374 -07 000000501 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:47:43.384 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.384 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36015
17-03-18 04:47:43.394 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.394 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.394 -07 000000424 INF: FPGA: Recv ZSGSRD 36013
17-03-18 04:47:43.404 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.404 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.404 -07 000000626 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:47:43.414 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.414 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.414 -07 000000625 INF: FPGA: Recv ZSGSRD 36027
17-03-18 04:47:43.424 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.424 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.424 -07 000000447 INF: FPGA: Recv ZSGSRD 36027
17-03-18 04:47:43.434 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.434 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.434 -07 000000447 INF: FPGA: Recv ZSGSRD 36023
17-03-18 04:47:43.444 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.444 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.444 -07 000000626 INF: FPGA: Recv ZSGSRD 36022
17-03-18 04:47:43.454 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.454 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:43.454 -07 000000606 INF: FPGA: Recv ZSGSRD 36024
17-03-18 04:47:43.464 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.464 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:43.464 -07 000000461 INF: FPGA: Recv ZPIEZORD 32001
17-03-18 04:47:43.474 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:43.474 -07 000000569 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.9 V.
17-03-18 04:47:43.474 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36022 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36022 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36013 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:47:43.474 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36022, posNoise = 6, negNoise = 9
17-03-18 04:47:43.474 -07 000000569 INF: Z Motor: After move to -0.171724, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:43.474 -07 000000569 INF: Z Motor: Settle wait time = 1468 ms, measure time = 104 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:47:43.474 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:43.524 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:47:43.524 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:43.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:43.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:43.524 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:43.524 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:43.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:43.524 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:43.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:43.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:43.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:43.534 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:43.534 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:47:43.534 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:47:43.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:43.584 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:43.884 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:43.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:43.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:43.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 04:47:43.924 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:43.924 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:43.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 04:47:44.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:47:44.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:44.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:44.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:47:44.024 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:44.024 -07 000000382 INF: Autofocus start
17-03-18 04:47:44.024 -07 000000382 INF: MeasureProfile start
17-03-18 04:47:44.024 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:44.034 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:44.034 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:44.034 -07 000000382 INF: MeasureProfile done
17-03-18 04:47:44.034 -07 000000382 INF: X=64  Z correction [um]=0.2557664
17-03-18 04:47:44.034 -07 000000382 INF: Autofocus finished
17-03-18 04:47:44.234 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:44.234 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:47:44.234 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.171736321781648. ----------
17-03-18 04:47:44.244 -07 000000610 INF: Cycle	129	Tile	18	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:44.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36082, sync = True, waitForSettling = True)
17-03-18 04:47:44.244 -07 000000610 INF: Z Motor: Moving to -0.165173 mm, started at -0.171736 mm, distance = 6.56 um
17-03-18 04:47:44.264 -07 000000610 INF: FPGA: Xmit ZDACW 36082\n [Z Motor]
17-03-18 04:47:44.264 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:47:44.274 -07 000000610 INF: FPGA: 'ZDACW 36082' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:47:44.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:44.274 -07 000000625 INF: FPGA: Recv ZDACR 36082
17-03-18 04:47:44.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:44.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35000
17-03-18 04:47:44.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:44.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.444 -07 000000606 INF: FPGA: Recv ZSGSRD 35007
17-03-18 04:47:44.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.454 -07 000000581 INF: FPGA: Recv ZSGSRD 34999
17-03-18 04:47:44.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.464 -07 000000455 INF: FPGA: Recv ZSGSRD 34998
17-03-18 04:47:44.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.474 -07 000000502 INF: FPGA: Recv ZSGSRD 34998
17-03-18 04:47:44.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:44.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.484 -07 000000424 INF: FPGA: Recv ZSGSRD 35006
17-03-18 04:47:44.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.494 -07 000000501 INF: FPGA: Recv ZSGSRD 35008
17-03-18 04:47:44.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.504 -07 000000581 INF: FPGA: Recv ZSGSRD 34994
17-03-18 04:47:44.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.514 -07 000000625 INF: FPGA: Recv ZSGSRD 35006
17-03-18 04:47:44.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:44.524 -07 000000618 INF: FPGA: Recv ZSGSRD 35003
17-03-18 04:47:44.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:44.534 -07 000000467 INF: FPGA: Recv ZPIEZORD 30646
17-03-18 04:47:44.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:44.544 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.506 V. Piezo Error = -9.6 V.
17-03-18 04:47:44.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35002 (-164.3 uncal um), Error = 0.9 uncal um, Median = 35002 (-164.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34994 (-164.3 uncal um), Max = 35008 (-164.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:47:44.544 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35002, posNoise = 6, negNoise = 8
17-03-18 04:47:44.544 -07 000000610 INF: Z Motor: After move to -0.165173, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:44.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-18 04:47:44.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:44.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:44.544 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:44.544 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:44.544 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:44.544 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:44.544 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:44.544 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:44.544 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:47:44.544 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:44.544 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:47:44.544 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:44.554 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:44.554 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:44.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:47:44.554 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:44.564 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:47:44.564 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:47:44.564 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:47:44.564 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:47:44.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36258 150\n [Camera]
17-03-18 04:47:44.614 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.996267,
17-03-18 04:47:44.764 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:45.194 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:45.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:45.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:45.194 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:45.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:45.204 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:45.204 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:45.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:47:45.204 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:45.204 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:47:45.384 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36258 811
17-03-18 04:47:45.534 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:45.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:47:45.594 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:47:45.594 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:45.594 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:45.594 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:47:45.594 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:47:45.594 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:47:45.594 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:45.604 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:45.604 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:47:45.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:45.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:45.744 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:45.744 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:45.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:45.744 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:45.754 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:45.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:47:45.754 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:45.754 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:47:45.934 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:47:45.934 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:45.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36258 150' command took 2 ms to send, 1355 ms to get response, and 1366 ms overall
17-03-18 04:47:45.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:47:45.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165183625397052. ------
17-03-18 04:47:45.944 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:45.944 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17156 mm
17-03-18 04:47:45.944 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:45.944 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:46.064 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 04:47:46.064 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:46.064 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:47:46.064 -07 000000625 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 04:47:46.064 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37476, sync = True, waitForSettling = False)
17-03-18 04:47:46.064 -07 000000618 INF: Z Motor: Moving to -0.171554 mm, started at -0.165184 mm, distance = -6.37 um
17-03-18 04:47:46.074 -07 000000618 INF: FPGA: Xmit ZDACW 37476\n [Z Motor]
17-03-18 04:47:46.074 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:47:46.084 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:46.084 -07 000000618 INF: FPGA: 'ZDACW 37476' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:47:46.084 -07 000000474 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:47:46.094 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:47:46.094 -07 000000625 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:46.094 -07 000000625 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:46.094 -07 000000625 INF: Y Motor: Moving 1353 steps-32
17-03-18 04:47:46.094 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:46.094 -07 000000461 INF: FPGA: Recv ZDACR 37476
17-03-18 04:47:46.104 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:46.104 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:47:46.104 -07 000000618 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 04:47:46.134 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:47:46.134 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:47:46.134 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:46.134 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:47:46.134 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:47:46.134 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:46.134 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:46.134 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:46.134 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:47:46.144 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:47:46.264 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:46.264 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 04:47:46.474 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:47:46.474 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:47:46.514 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:46.514 -07 000000479 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:47:46.524 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:46.524 -07 000000625 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:46.524 -07 000000625 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:47:46.524 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec
17-03-18 04:47:46.704 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:47.474 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:47.474 -07 000000512 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:47:47.484 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:47.484 -07 000000625 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:47.494 -07 000000625 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:47.494 -07 000000625 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:47.504 -07 000000625 INF: Y Motor: Moved to 74.8306 after 1434 ms (table move)
17-03-18 04:47:47.504 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171554 mm (DAC = 37476)
17-03-18 04:47:47.504 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.504 -07 000000626 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:47:47.514 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:47:47.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.514 -07 000000626 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:47:47.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.524 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.524 -07 000000501 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:47:47.534 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.534 -07 000000569 INF: FPGA: Recv ZSGSRD 35993
17-03-18 04:47:47.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.544 -07 000000480 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:47:47.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.554 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.554 -07 000000618 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:47:47.564 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.564 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35992
17-03-18 04:47:47.574 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.574 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.574 -07 000000479 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:47:47.584 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.584 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.584 -07 000000626 INF: FPGA: Recv ZSGSRD 35983
17-03-18 04:47:47.594 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:47.594 -07 000000581 INF: FPGA: Recv ZSGSRD 35994
17-03-18 04:47:47.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.604 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:47.604 -07 000000382 INF: FPGA: Recv ZPIEZORD 31963
17-03-18 04:47:47.614 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:47.614 -07 000000424 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.9 V.
17-03-18 04:47:47.614 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35993 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35994 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 35997 (-170.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:47:47.614 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35993, posNoise = 4, negNoise = 10
17-03-18 04:47:47.614 -07 000000424 INF: Z Motor: After move to -0.171554, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:47.614 -07 000000424 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-18 04:47:47.614 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:47.664 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-18 04:47:47.664 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:47.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:47.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:47.664 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:47.664 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:47.664 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:47.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:47.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:47.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:47.674 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:47.674 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:47.684 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:47:47.684 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:47:47.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:47.724 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:48.024 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:48.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:48.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:48.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:47:48.064 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:48.064 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:48.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:47:48.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:47:48.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:48.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:48.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:47:48.164 -07 000000480 INF: Autofocus start
17-03-18 04:47:48.164 -07 000000480 INF: MeasureProfile start
17-03-18 04:47:48.164 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:48.164 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:48.174 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:48.174 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:48.174 -07 000000480 INF: MeasureProfile done
17-03-18 04:47:48.174 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:47:48.174 -07 000000480 INF: Autofocus finished
17-03-18 04:47:48.374 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:48.374 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:47:48.374 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171550019629537. ----------
17-03-18 04:47:48.374 -07 000000610 INF: Cycle	129	Tile	19	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:48.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35991, sync = True, waitForSettling = True)
17-03-18 04:47:48.384 -07 000000610 INF: Z Motor: Moving to -0.164756 mm, started at -0.171550 mm, distance = 6.79 um
17-03-18 04:47:48.384 -07 000000610 INF: FPGA: Xmit ZDACW 35991\n [Z Motor]
17-03-18 04:47:48.384 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:47:48.394 -07 000000610 INF: FPGA: 'ZDACW 35991' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:48.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:48.394 -07 000000625 INF: FPGA: Recv ZDACR 35991
17-03-18 04:47:48.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:48.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.554 -07 000000461 INF: FPGA: Recv ZSGSRD 34931
17-03-18 04:47:48.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:48.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.564 -07 000000474 INF: FPGA: Recv ZSGSRD 34937
17-03-18 04:47:48.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.574 -07 000000626 INF: FPGA: Recv ZSGSRD 34933
17-03-18 04:47:48.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.584 -07 000000512 INF: FPGA: Recv ZSGSRD 34936
17-03-18 04:47:48.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.594 -07 000000480 INF: FPGA: Recv ZSGSRD 34930
17-03-18 04:47:48.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.604 -07 000000382 INF: FPGA: Recv ZSGSRD 34941
17-03-18 04:47:48.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.614 -07 000000424 INF: FPGA: Recv ZSGSRD 34934
17-03-18 04:47:48.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.624 -07 000000501 INF: FPGA: Recv ZSGSRD 34932
17-03-18 04:47:48.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.634 -07 000000512 INF: FPGA: Recv ZSGSRD 34946
17-03-18 04:47:48.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:48.644 -07 000000480 INF: FPGA: Recv ZSGSRD 34931
17-03-18 04:47:48.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:48.654 -07 000000455 INF: FPGA: Recv ZPIEZORD 30537
17-03-18 04:47:48.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:48.664 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.492 V. Piezo Error = -9.7 V.
17-03-18 04:47:48.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34935 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34934 (-163.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 34930 (-163.9 uncal um), Max = 34946 (-164.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:47:48.664 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34935, posNoise = 11, negNoise = 5
17-03-18 04:47:48.664 -07 000000610 INF: Z Motor: After move to -0.164756, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:48.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:47:48.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:48.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:48.664 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:48.664 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:48.664 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:48.664 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:48.664 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:48.664 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:48.664 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:48.664 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:48.664 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:47:48.664 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:48.674 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:48.674 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:48.674 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:47:48.674 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:48.684 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:47:48.684 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:47:48.684 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:47:48.684 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:47:48.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36168 150\n [Camera]
17-03-18 04:47:48.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:49.304 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:49.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:49.314 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:49.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:49.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:49.314 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:49.314 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:49.314 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:47:49.314 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:49.314 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:47:49.504 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36168 811
17-03-18 04:47:49.654 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:49.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:47:49.694 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:47:49.694 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:49.694 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:47:49.694 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:47:49.694 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:49.694 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:47:49.694 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:47:49.694 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:49.704 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:47:49.854 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:49.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:49.854 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:49.864 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:49.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:49.864 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:49.864 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:49.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:47:49.864 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:49.864 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:47:49.974 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.979922,
17-03-18 04:47:50.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:50.044 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:50.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36168 150' command took 2 ms to send, 1359 ms to get response, and 1365 ms overall
17-03-18 04:47:50.264 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:47:50.264 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:47:50.264 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:50.264 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:47:50.264 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:47:50.264 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:50.264 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:50.264 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:47:50.264 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:47:50.264 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:50.274 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:47:50.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:47:50.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:47:50.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:47:50.354 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:47:50.354 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:47:50.354 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 04:47:50.364 -07 000000610 INF: FPGA: 'EMCUR 80' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:50.364 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:47:50.864 -07 000000461 INF: FPGA: Recv EMIN
17-03-18 04:47:50.864 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 496 ms to get response, and 505 ms overall
17-03-18 04:47:50.864 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:47:50.864 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 04:47:50.874 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:50.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:47:50.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164753203183554. ------
17-03-18 04:47:50.874 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:50.874 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13917 mm
17-03-18 04:47:50.874 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:50.874 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:47:50.874 -07 000000581 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 04:47:50.874 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30401, sync = True, waitForSettling = False)
17-03-18 04:47:50.874 -07 000000626 INF: Z Motor: Moving to -0.139167 mm, started at -0.164753 mm, distance = 25.59 um
17-03-18 04:47:50.874 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:50.884 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:50.884 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:50.884 -07 000000480 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:47:50.894 -07 000000626 INF: FPGA: Xmit ZDACW 30401\n [Z Motor]
17-03-18 04:47:50.894 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:47:50.894 -07 000000581 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:50.894 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:47:50.894 -07 000000581 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:47:50.894 -07 000000581 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:47:50.904 -07 000000626 INF: FPGA: 'ZDACW 30401' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:47:50.904 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:50.914 -07 000000581 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:47:50.924 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:50.924 -07 000000569 INF: FPGA: Recv ZDACR 30401
17-03-18 04:47:50.934 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:50.934 -07 000000626 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:47:51.104 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:51.104 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:47:51.704 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:52.534 -07 000000625 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 04:47:52.534 -07 000000581 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1642 ms overall
17-03-18 04:47:52.534 -07 000000581 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:47:52.534 -07 000000581 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:47:52.534 -07 000000581 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.918 mm, average velocity = 9.085 mm/sec
17-03-18 04:47:55.334 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.031682,
17-03-18 04:47:55.384 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:55.384 -07 000000625 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:47:55.394 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:55.394 -07 000000581 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:55.424 -07 000000581 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:55.424 -07 000000581 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:47:55.434 -07 000000581 INF: Y Motor: Moved to 59.9097 after 4552 ms
17-03-18 04:47:55.434 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139167 mm (DAC = 30401)
17-03-18 04:47:55.434 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.434 -07 000000581 INF: FPGA: Recv ZSGSRD 30957
17-03-18 04:47:55.444 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:47:55.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.444 -07 000000467 INF: FPGA: Recv ZSGSRD 30956
17-03-18 04:47:55.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.454 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.454 -07 000000479 INF: FPGA: Recv ZSGSRD 30949
17-03-18 04:47:55.464 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.464 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.464 -07 000000569 INF: FPGA: Recv ZSGSRD 30949
17-03-18 04:47:55.474 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.474 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30956
17-03-18 04:47:55.484 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.484 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.484 -07 000000618 INF: FPGA: Recv ZSGSRD 30953
17-03-18 04:47:55.494 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.494 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.494 -07 000000581 INF: FPGA: Recv ZSGSRD 30953
17-03-18 04:47:55.504 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.504 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.504 -07 000000606 INF: FPGA: Recv ZSGSRD 30952
17-03-18 04:47:55.514 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.514 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.514 -07 000000502 INF: FPGA: Recv ZSGSRD 30951
17-03-18 04:47:55.524 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.524 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:55.524 -07 000000625 INF: FPGA: Recv ZSGSRD 30957
17-03-18 04:47:55.534 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.534 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:55.534 -07 000000455 INF: FPGA: Recv ZPIEZORD 26339
17-03-18 04:47:55.544 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:55.544 -07 000000447 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -10.1 V.
17-03-18 04:47:55.544 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30953 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30953 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30949 (-138.3 uncal um), Max = 30957 (-138.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:47:55.544 -07 000000447 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30953, posNoise = 4, negNoise = 4
17-03-18 04:47:55.544 -07 000000447 INF: Z Motor: After move to -0.139167, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:55.544 -07 000000447 INF: Z Motor: Settle wait time = 4556 ms, measure time = 106 ms (allowed 150 ms), total time = 4662 ms
17-03-18 04:47:55.544 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:55.594 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4714 ms
17-03-18 04:47:55.594 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:55.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:55.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:55.594 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:55.594 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:55.594 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:55.594 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:55.594 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:55.594 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:47:55.624 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 04:47:55.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:55.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:47:55.624 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:55.644 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:47:55.644 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:47:55.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:55.684 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:47:55.984 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:47:55.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:47:55.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:47:55.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 04:47:56.024 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:47:56.024 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:47:56.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:47:56.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:47:56.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:56.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:47:56.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:47:56.124 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:56.124 -07 000000625 INF: Image SNR check: start
17-03-18 04:47:56.124 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:56.134 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:47:56.134 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:47:56.144 -07 000000625 INF: Image SNR check: pass  [peak (Max-Min)=114.98]
17-03-18 04:47:56.144 -07 000000625 INF: Autofocus start
17-03-18 04:47:56.144 -07 000000625 INF: MeasureProfile start
17-03-18 04:47:56.154 -07 000000625 INF: MeasureProfile done
17-03-18 04:47:56.154 -07 000000625 INF: X=20  Z correction [um]=0.07225946
17-03-18 04:47:56.154 -07 000000625 INF: Autofocus finished
17-03-18 04:47:56.334 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:47:56.334 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:47:56.334 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139171990435062. ----------
17-03-18 04:47:56.334 -07 000000610 INF: Cycle	129	Tile	1	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:47:56.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28929, sync = True, waitForSettling = True)
17-03-18 04:47:56.344 -07 000000610 INF: Z Motor: Moving to -0.132428 mm, started at -0.139172 mm, distance = 6.74 um
17-03-18 04:47:56.344 -07 000000610 INF: FPGA: Xmit ZDACW 28929\n [Z Motor]
17-03-18 04:47:56.344 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:47:56.354 -07 000000610 INF: FPGA: 'ZDACW 28929' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:47:56.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:56.354 -07 000000474 INF: FPGA: Recv ZDACR 28929
17-03-18 04:47:56.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:47:56.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.514 -07 000000447 INF: FPGA: Recv ZSGSRD 29902
17-03-18 04:47:56.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:56.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.524 -07 000000625 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:47:56.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.534 -07 000000626 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:47:56.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.544 -07 000000461 INF: FPGA: Recv ZSGSRD 29905
17-03-18 04:47:56.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.554 -07 000000474 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:47:56.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.564 -07 000000480 INF: FPGA: Recv ZSGSRD 29902
17-03-18 04:47:56.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.574 -07 000000382 INF: FPGA: Recv ZSGSRD 29907
17-03-18 04:47:56.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.584 -07 000000501 INF: FPGA: Recv ZSGSRD 29904
17-03-18 04:47:56.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29901
17-03-18 04:47:56.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:56.604 -07 000000569 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:47:56.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:56.614 -07 000000447 INF: FPGA: Recv ZPIEZORD 25220
17-03-18 04:47:56.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:56.624 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -10.3 V.
17-03-18 04:47:56.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29904 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29906 (-131.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29901 (-131.6 uncal um), Max = 29907 (-131.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:47:56.624 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29904, posNoise = 3, negNoise = 3
17-03-18 04:47:56.624 -07 000000610 INF: Z Motor: After move to -0.132428, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:56.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:47:56.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:56.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:56.624 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:47:56.624 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:47:56.624 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:47:56.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:56.624 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:47:56.624 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:47:56.624 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:56.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:47:56.624 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:47:56.624 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:56.634 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:47:56.634 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:47:56.644 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:47:56.644 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:47:56.644 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:47:56.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:47:56.654 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:47:56.654 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:47:56.664 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:47:56.664 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 04:47:56.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29106 150\n [Camera]
17-03-18 04:47:56.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:47:56.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:47:56.864 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:47:57.294 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:47:57.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:47:57.294 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:57.294 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:57.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:47:57.294 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:47:57.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:47:57.294 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:57.294 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:57.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:47:57.484 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29106 811
17-03-18 04:47:57.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:47:57.674 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:47:57.674 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:47:57.674 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:57.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:47:57.674 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:47:57.674 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:57.674 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:57.674 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:47:57.674 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:47:57.684 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:47:57.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:47:57.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:47:57.834 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:47:57.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:47:57.844 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:47:57.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:47:57.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:47:57.844 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:47:57.844 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:47:57.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:47:58.024 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:47:58.034 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:47:58.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29106 150' command took 2 ms to send, 1360 ms to get response, and 1366 ms overall
17-03-18 04:47:58.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:47:58.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132432991898355. ------
17-03-18 04:47:58.144 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13889 mm
17-03-18 04:47:58.144 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:47:58.154 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:47:58.154 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30340, sync = True, waitForSettling = False)
17-03-18 04:47:58.154 -07 000000461 INF: Z Motor: Moving to -0.138888 mm, started at -0.132433 mm, distance = -6.45 um
17-03-18 04:47:58.154 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:47:58.154 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 04:47:58.154 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:47:58.164 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:47:58.164 -07 000000461 INF: FPGA: Xmit ZDACW 30340\n [Z Motor]
17-03-18 04:47:58.164 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:47:58.174 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:58.174 -07 000000461 INF: FPGA: 'ZDACW 30340' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:47:58.174 -07 000000618 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:47:58.184 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:47:58.184 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:47:58.184 -07 000000474 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:58.184 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:47:58.184 -07 000000474 INF: Y Motor: Moving 1333 steps0
17-03-18 04:47:58.194 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:47:58.194 -07 000000618 INF: FPGA: Recv ZDACR 30340
17-03-18 04:47:58.204 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:47:58.204 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:47:58.204 -07 000000461 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:47:58.224 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:47:58.224 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:47:58.224 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:58.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:47:58.234 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:47:58.234 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:47:58.234 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:58.234 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:47:58.234 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:47:58.234 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:47:58.384 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:47:58.384 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:47:58.574 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:47:58.574 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:47:58.614 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:58.624 -07 000000455 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:47:58.624 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:47:58.624 -07 000000474 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:58.624 -07 000000474 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:47:58.624 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 04:47:59.574 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:47:59.574 -07 000000626 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:47:59.584 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.584 -07 000000474 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:47:59.614 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:47:59.614 -07 000000474 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:47:59.614 -07 000000474 INF: Y Motor: Moved to 60.7319 after 1459 ms (table move)
17-03-18 04:47:59.614 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138888 mm (DAC = 30340)
17-03-18 04:47:59.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.614 -07 000000461 INF: FPGA: Recv ZSGSRD 30915
17-03-18 04:47:59.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:47:59.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.624 -07 000000569 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:47:59.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.634 -07 000000382 INF: FPGA: Recv ZSGSRD 30916
17-03-18 04:47:59.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:47:59.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.644 -07 000000625 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:47:59.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.654 -07 000000447 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:47:59.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.664 -07 000000455 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:47:59.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.674 -07 000000618 INF: FPGA: Recv ZSGSRD 30910
17-03-18 04:47:59.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.684 -07 000000480 INF: FPGA: Recv ZSGSRD 30920
17-03-18 04:47:59.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.694 -07 000000467 INF: FPGA: Recv ZSGSRD 30918
17-03-18 04:47:59.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:47:59.704 -07 000000461 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:47:59.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.714 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:47:59.714 -07 000000502 INF: FPGA: Recv ZPIEZORD 26602
17-03-18 04:47:59.724 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:47:59.724 -07 000000606 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.5 V.
17-03-18 04:47:59.724 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30911 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30904 (-138.1 uncal um), Max = 30920 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:47:59.724 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30911, posNoise = 9, negNoise = 7
17-03-18 04:47:59.724 -07 000000606 INF: Z Motor: After move to -0.138888, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:47:59.724 -07 000000606 INF: Z Motor: Settle wait time = 1463 ms, measure time = 105 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:47:59.724 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:47:59.774 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:47:59.774 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:47:59.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:47:59.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:47:59.774 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:47:59.774 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:47:59.774 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:47:59.774 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:47:59.774 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:47:59.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:47:59.784 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:47:59.784 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:47:59.784 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:47:59.784 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:47:59.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:47:59.834 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:00.134 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:00.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:00.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:00.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:00.174 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:00.174 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:00.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:48:00.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:48:00.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:00.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:00.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:48:00.374 -07 000000424 INF: Autofocus start
17-03-18 04:48:00.374 -07 000000424 INF: MeasureProfile start
17-03-18 04:48:00.384 -07 000000424 INF: MeasureProfile done
17-03-18 04:48:00.384 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:48:00.384 -07 000000424 INF: Autofocus finished
17-03-18 04:48:00.394 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:00.394 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:00.404 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:48:00.424 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:00.624 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:00.624 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:48:00.624 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138902173525108. ----------
17-03-18 04:48:00.624 -07 000000610 INF: Cycle	129	Tile	2	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:00.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-18 04:48:00.634 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138902 mm, distance = 6.85 um
17-03-18 04:48:00.634 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-18 04:48:00.634 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:48:00.644 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:00.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:00.644 -07 000000512 INF: FPGA: Recv ZDACR 28847
17-03-18 04:48:00.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:00.694 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.054831,
17-03-18 04:48:00.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.804 -07 000000625 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:48:00.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.814 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:48:00.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.824 -07 000000461 INF: FPGA: Recv ZSGSRD 29839
17-03-18 04:48:00.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.834 -07 000000626 INF: FPGA: Recv ZSGSRD 29846
17-03-18 04:48:00.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.844 -07 000000480 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:48:00.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.854 -07 000000467 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:48:00.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.864 -07 000000424 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:48:00.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.874 -07 000000606 INF: FPGA: Recv ZSGSRD 29842
17-03-18 04:48:00.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.884 -07 000000447 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:48:00.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:00.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:00.894 -07 000000480 INF: FPGA: Recv ZSGSRD 29843
17-03-18 04:48:00.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:00.904 -07 000000467 INF: FPGA: Recv ZPIEZORD 25180
17-03-18 04:48:00.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:00.914 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.2 V.
17-03-18 04:48:00.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29839 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:48:00.914 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 4, negNoise = 7
17-03-18 04:48:00.914 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:00.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:48:00.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:00.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:00.914 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:00.914 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:00.914 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:00.914 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:00.914 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:00.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:00.914 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:00.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:00.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:00.914 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:00.924 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:00.924 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:00.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:00.924 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:00.934 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:48:00.934 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:48:00.934 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:48:00.934 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:48:00.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29024 150\n [Camera]
17-03-18 04:48:01.134 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:01.564 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:01.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:01.564 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:01.564 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:01.564 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:01.574 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:01.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:01.574 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:01.574 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:01.574 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:01.704 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:01.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:01.764 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 811
17-03-18 04:48:01.904 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:01.964 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:48:01.964 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:48:01.964 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:01.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:48:01.964 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:48:01.964 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:01.964 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:01.964 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:01.964 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:01.974 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:48:02.114 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:02.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:02.114 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:02.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:02.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:02.114 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:02.124 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:02.124 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:48:02.124 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:02.124 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:48:02.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:02.304 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:02.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29024 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-18 04:48:02.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:02.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132060387594133. ------
17-03-18 04:48:02.314 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:02.314 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13883 mm
17-03-18 04:48:02.314 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:02.434 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:02.434 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 04:48:02.434 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:02.434 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:48:02.434 -07 000000606 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:48:02.434 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30327, sync = True, waitForSettling = False)
17-03-18 04:48:02.434 -07 000000424 INF: Z Motor: Moving to -0.138828 mm, started at -0.132060 mm, distance = -6.77 um
17-03-18 04:48:02.444 -07 000000424 INF: FPGA: Xmit ZDACW 30327\n [Z Motor]
17-03-18 04:48:02.444 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:48:02.454 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:02.454 -07 000000424 INF: FPGA: 'ZDACW 30327' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:48:02.454 -07 000000512 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:48:02.464 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:48:02.464 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:02.464 -07 000000606 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:02.464 -07 000000606 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:02.464 -07 000000606 INF: Y Motor: Moving 1345 steps-22
17-03-18 04:48:02.464 -07 000000625 INF: FPGA: Recv ZDACR 30327
17-03-18 04:48:02.474 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:48:02.474 -07 000000424 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:48:02.474 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:02.514 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:48:02.514 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:48:02.514 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:02.514 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:48:02.514 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:48:02.514 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:02.524 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:02.524 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:48:02.524 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:02.534 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:48:02.634 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:02.634 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:48:02.844 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:48:02.844 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:48:02.904 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:02.904 -07 000000501 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:48:02.914 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:02.914 -07 000000606 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:02.914 -07 000000606 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:48:02.914 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.167 mm/sec
17-03-18 04:48:03.864 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:03.864 -07 000000424 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:48:03.874 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:03.874 -07 000000606 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:03.914 -07 000000606 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:03.914 -07 000000606 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:03.914 -07 000000606 INF: Y Motor: Moved to 61.5625 after 1478 ms (table move)
17-03-18 04:48:03.914 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138828 mm (DAC = 30327)
17-03-18 04:48:03.914 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.914 -07 000000479 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:48:03.924 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:03.924 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.924 -07 000000618 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:48:03.934 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.934 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.934 -07 000000606 INF: FPGA: Recv ZSGSRD 30893
17-03-18 04:48:03.944 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.944 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.944 -07 000000424 INF: FPGA: Recv ZSGSRD 30894
17-03-18 04:48:03.954 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.954 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.954 -07 000000479 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:48:03.964 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.964 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.964 -07 000000461 INF: FPGA: Recv ZSGSRD 30900
17-03-18 04:48:03.974 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.974 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.974 -07 000000606 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:48:03.984 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.984 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.984 -07 000000474 INF: FPGA: Recv ZSGSRD 30895
17-03-18 04:48:03.994 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:03.994 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:03.994 -07 000000502 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:48:04.004 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:04.004 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:04.004 -07 000000382 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:48:04.014 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:04.014 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:04.014 -07 000000606 INF: FPGA: Recv ZPIEZORD 26619
17-03-18 04:48:04.024 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:04.024 -07 000000626 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.4 V.
17-03-18 04:48:04.024 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30901 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30902 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30893 (-138.0 uncal um), Max = 30907 (-138.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:48:04.024 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30901, posNoise = 6, negNoise = 8
17-03-18 04:48:04.024 -07 000000626 INF: Z Motor: After move to -0.138828, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:04.024 -07 000000626 INF: Z Motor: Settle wait time = 1481 ms, measure time = 105 ms (allowed 150 ms), total time = 1586 ms
17-03-18 04:48:04.024 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:04.074 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1759 ms
17-03-18 04:48:04.074 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:04.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:04.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:04.074 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:04.074 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:04.074 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:04.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:04.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:04.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:04.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:04.084 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:04.084 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:48:04.084 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:48:04.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:04.134 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:04.434 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:04.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:04.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:04.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:04.474 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:04.474 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:04.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:48:04.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 04:48:04.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:04.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:04.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 04:48:04.574 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:04.574 -07 000000455 INF: Autofocus start
17-03-18 04:48:04.574 -07 000000455 INF: MeasureProfile start
17-03-18 04:48:04.574 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:04.584 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:04.584 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:04.584 -07 000000455 INF: MeasureProfile done
17-03-18 04:48:04.584 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:48:04.584 -07 000000455 INF: Autofocus finished
17-03-18 04:48:04.784 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:04.784 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:04.794 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.13883793140369. ----------
17-03-18 04:48:04.794 -07 000000610 INF: Cycle	129	Tile	3	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:04.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28852, sync = True, waitForSettling = True)
17-03-18 04:48:04.794 -07 000000610 INF: Z Motor: Moving to -0.132076 mm, started at -0.138838 mm, distance = 6.76 um
17-03-18 04:48:04.804 -07 000000610 INF: FPGA: Xmit ZDACW 28852\n [Z Motor]
17-03-18 04:48:04.804 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:48:04.814 -07 000000610 INF: FPGA: 'ZDACW 28852' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:04.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:04.814 -07 000000474 INF: FPGA: Recv ZDACR 28852
17-03-18 04:48:04.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:04.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:04.974 -07 000000382 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:48:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:04.984 -07 000000480 INF: FPGA: Recv ZSGSRD 29856
17-03-18 04:48:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:04.994 -07 000000502 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:48:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.004 -07 000000455 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:48:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.014 -07 000000618 INF: FPGA: Recv ZSGSRD 29854
17-03-18 04:48:05.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.024 -07 000000382 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:48:05.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.034 -07 000000480 INF: FPGA: Recv ZSGSRD 29851
17-03-18 04:48:05.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.044 -07 000000502 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:48:05.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29854
17-03-18 04:48:05.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:05.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:48:05.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:05.074 -07 000000512 INF: FPGA: Recv ZPIEZORD 25258
17-03-18 04:48:05.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:05.084 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.1 V.
17-03-18 04:48:05.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29851 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29844 (-131.3 uncal um), Max = 29856 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:48:05.084 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29851, posNoise = 5, negNoise = 7
17-03-18 04:48:05.084 -07 000000610 INF: Z Motor: After move to -0.132076, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:05.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:48:05.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:05.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:05.084 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:05.084 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:05.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:05.084 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:05.084 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:05.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:05.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:05.084 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:05.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:05.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:05.094 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:05.094 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:05.094 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:05.094 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:05.104 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:48:05.104 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:05.104 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:48:05.104 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:48:05.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29028 150\n [Camera]
17-03-18 04:48:05.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:05.734 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:05.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:05.734 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:05.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:05.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:05.734 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:05.734 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:05.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:05.734 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:05.734 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:05.924 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29028 811
17-03-18 04:48:06.074 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.004458,
17-03-18 04:48:06.074 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:06.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:48:06.134 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:48:06.134 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:06.134 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:48:06.134 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:48:06.134 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:06.134 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:06.134 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:48:06.134 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:06.144 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:48:06.274 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:06.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:06.274 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:06.284 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:06.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:06.284 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:06.284 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:06.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:48:06.284 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:06.284 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:48:06.474 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:48:06.474 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:06.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29028 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-18 04:48:06.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:06.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132092508654841. ------
17-03-18 04:48:06.474 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13853 mm
17-03-18 04:48:06.484 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:06.484 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:06.484 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:48:06.484 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:06.484 -07 000000606 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:48:06.484 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30262, sync = True, waitForSettling = False)
17-03-18 04:48:06.484 -07 000000479 INF: Z Motor: Moving to -0.138531 mm, started at -0.132093 mm, distance = -6.44 um
17-03-18 04:48:06.494 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:06.494 -07 000000479 INF: FPGA: Xmit ZDACW 30262\n [Z Motor]
17-03-18 04:48:06.494 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:48:06.504 -07 000000479 INF: FPGA: 'ZDACW 30262' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:48:06.504 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:06.504 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:48:06.514 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:06.514 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:48:06.514 -07 000000606 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:06.514 -07 000000606 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:06.514 -07 000000606 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:48:06.524 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:06.524 -07 000000461 INF: FPGA: Recv ZDACR 30262
17-03-18 04:48:06.534 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:48:06.534 -07 000000479 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:48:06.534 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:06.684 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:48:06.684 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:48:06.684 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:06.684 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:48:06.684 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:48:06.684 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:06.694 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:06.694 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:48:06.694 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:48:06.694 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:48:06.704 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:06.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:06.714 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:06.714 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:48:06.904 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:48:06.904 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:48:06.954 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:06.964 -07 000000447 INF: FPGA: Recv YRDPOS 127783
17-03-18 04:48:06.964 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:48:06.964 -07 000000606 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:06.964 -07 000000606 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:48:06.964 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 04:48:07.914 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:07.914 -07 000000455 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:48:07.924 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:07.924 -07 000000606 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:07.964 -07 000000606 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:07.964 -07 000000606 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:48:07.964 -07 000000606 INF: Y Motor: Moved to 62.3945 after 1477 ms (table move)
17-03-18 04:48:07.964 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138531 mm (DAC = 30262)
17-03-18 04:48:07.964 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:07.974 -07 000000480 INF: FPGA: Recv ZSGSRD 30856
17-03-18 04:48:07.974 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:48:07.974 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:07.974 -07 000000581 INF: FPGA: Recv ZSGSRD 30849
17-03-18 04:48:07.984 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:07.984 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:07.984 -07 000000467 INF: FPGA: Recv ZSGSRD 30844
17-03-18 04:48:07.994 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:07.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:07.994 -07 000000461 INF: FPGA: Recv ZSGSRD 30850
17-03-18 04:48:08.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:08.004 -07 000000512 INF: FPGA: Recv ZSGSRD 30857
17-03-18 04:48:08.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.014 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:08.014 -07 000000502 INF: FPGA: Recv ZSGSRD 30858
17-03-18 04:48:08.024 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.024 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:08.024 -07 000000618 INF: FPGA: Recv ZSGSRD 30857
17-03-18 04:48:08.034 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.034 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:08.034 -07 000000479 INF: FPGA: Recv ZSGSRD 30854
17-03-18 04:48:08.044 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.044 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:08.044 -07 000000447 INF: FPGA: Recv ZSGSRD 30855
17-03-18 04:48:08.054 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.054 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:08.054 -07 000000606 INF: FPGA: Recv ZSGSRD 30849
17-03-18 04:48:08.064 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.064 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:08.064 -07 000000618 INF: FPGA: Recv ZPIEZORD 26600
17-03-18 04:48:08.074 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.074 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.4 V.
17-03-18 04:48:08.074 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30853 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30844 (-137.7 uncal um), Max = 30858 (-137.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:48:08.074 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30853, posNoise = 5, negNoise = 9
17-03-18 04:48:08.074 -07 000000382 INF: Z Motor: After move to -0.138531, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:08.074 -07 000000382 INF: Z Motor: Settle wait time = 1481 ms, measure time = 105 ms (allowed 150 ms), total time = 1586 ms
17-03-18 04:48:08.074 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:08.124 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 04:48:08.124 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:08.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:08.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:08.124 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:08.124 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:08.124 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:08.124 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:08.134 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:08.134 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:08.134 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:08.134 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:08.134 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:48:08.134 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:48:08.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:08.184 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:08.484 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:08.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:08.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:08.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 04:48:08.524 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:08.524 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:08.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:48:08.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:48:08.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:08.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:48:08.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:48:08.624 -07 000000501 INF: Autofocus start
17-03-18 04:48:08.624 -07 000000501 INF: MeasureProfile start
17-03-18 04:48:08.624 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:08.624 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:08.634 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:08.634 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:08.634 -07 000000501 INF: MeasureProfile done
17-03-18 04:48:08.634 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:48:08.634 -07 000000501 INF: Autofocus finished
17-03-18 04:48:08.834 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:08.834 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:08.834 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138529569220886. ----------
17-03-18 04:48:08.834 -07 000000610 INF: Cycle	129	Tile	4	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:08.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28757, sync = True, waitForSettling = True)
17-03-18 04:48:08.844 -07 000000610 INF: Z Motor: Moving to -0.131641 mm, started at -0.138530 mm, distance = 6.89 um
17-03-18 04:48:08.844 -07 000000610 INF: FPGA: Xmit ZDACW 28757\n [Z Motor]
17-03-18 04:48:08.844 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:48:08.854 -07 000000610 INF: FPGA: 'ZDACW 28757' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:08.854 -07 000000474 INF: FPGA: Recv ZDACR 28757
17-03-18 04:48:08.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:08.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:09.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.014 -07 000000461 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:48:09.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:09.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.024 -07 000000618 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:48:09.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.034 -07 000000479 INF: FPGA: Recv ZSGSRD 29781
17-03-18 04:48:09.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.044 -07 000000447 INF: FPGA: Recv ZSGSRD 29781
17-03-18 04:48:09.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.054 -07 000000474 INF: FPGA: Recv ZSGSRD 29784
17-03-18 04:48:09.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:48:09.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:09.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29775
17-03-18 04:48:09.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.084 -07 000000447 INF: FPGA: Recv ZSGSRD 29779
17-03-18 04:48:09.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.094 -07 000000424 INF: FPGA: Recv ZSGSRD 29783
17-03-18 04:48:09.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:09.104 -07 000000618 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:48:09.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:09.114 -07 000000502 INF: FPGA: Recv ZPIEZORD 25180
17-03-18 04:48:09.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:09.124 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.1 V.
17-03-18 04:48:09.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29781 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29784 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:48:09.124 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 4, negNoise = 5
17-03-18 04:48:09.124 -07 000000610 INF: Z Motor: After move to -0.131641, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:09.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:48:09.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:09.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:09.124 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:09.124 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:09.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:09.124 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:09.124 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:09.124 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:09.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:09.124 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:09.124 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:09.124 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:09.134 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:09.134 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:09.134 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:09.134 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:09.134 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:48:09.144 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:09.144 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:48:09.144 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:09.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28933 150\n [Camera]
17-03-18 04:48:09.344 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:09.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:48:09.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:48:09.774 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:09.774 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:09.774 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:48:09.774 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:48:09.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:48:09.774 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:09.774 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:09.774 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:48:09.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28933 811
17-03-18 04:48:10.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:10.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:48:10.154 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:48:10.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:10.164 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:10.164 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:48:10.164 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:48:10.164 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:10.164 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:10.164 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:48:10.174 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:48:10.314 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:10.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:10.324 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:10.324 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:10.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:10.324 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:10.324 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:48:10.324 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:10.324 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:10.324 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:48:10.514 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:10.514 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:10.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28933 150' command took 2 ms to send, 1361 ms to get response, and 1366 ms overall
17-03-18 04:48:10.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:10.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131636389592776. ------
17-03-18 04:48:10.634 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:10.634 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13832 mm
17-03-18 04:48:10.634 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:10.634 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:10.634 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30216, sync = True, waitForSettling = False)
17-03-18 04:48:10.634 -07 000000581 INF: Z Motor: Moving to -0.138320 mm, started at -0.131636 mm, distance = -6.68 um
17-03-18 04:48:10.634 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:48:10.634 -07 000000474 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:48:10.644 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:10.644 -07 000000581 INF: FPGA: Xmit ZDACW 30216\n [Z Motor]
17-03-18 04:48:10.644 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:48:10.654 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:10.654 -07 000000581 INF: FPGA: 'ZDACW 30216' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:48:10.654 -07 000000479 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:48:10.664 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:10.664 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:48:10.664 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:10.664 -07 000000474 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:10.664 -07 000000474 INF: Y Motor: Moving 1341 steps-18
17-03-18 04:48:10.674 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:10.674 -07 000000447 INF: FPGA: Recv ZDACR 30216
17-03-18 04:48:10.684 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:10.684 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:10.684 -07 000000581 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:48:10.724 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:48:10.724 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:10.724 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:10.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:48:10.724 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:48:10.724 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:10.734 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:48:10.734 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:48:10.734 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:10.734 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:48:10.864 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:10.864 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:48:11.064 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:48:11.064 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 402 ms overall
17-03-18 04:48:11.134 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:11.134 -07 000000461 INF: FPGA: Recv YRDPOS 129479
17-03-18 04:48:11.144 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:48:11.144 -07 000000474 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:11.144 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:48:11.144 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.838 mm, average velocity = 2.085 mm/sec
17-03-18 04:48:11.444 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.001704,
17-03-18 04:48:11.704 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:11.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:12.094 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:12.094 -07 000000479 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:48:12.104 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:12.104 -07 000000474 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:12.134 -07 000000474 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:12.134 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:48:12.134 -07 000000474 INF: Y Motor: Moved to 63.2227 after 1494 ms (table move)
17-03-18 04:48:12.134 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138320 mm (DAC = 30216)
17-03-18 04:48:12.134 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.134 -07 000000512 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:48:12.144 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:12.144 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.144 -07 000000479 INF: FPGA: Recv ZSGSRD 30818
17-03-18 04:48:12.154 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.154 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.154 -07 000000447 INF: FPGA: Recv ZSGSRD 30818
17-03-18 04:48:12.164 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.164 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.164 -07 000000512 INF: FPGA: Recv ZSGSRD 30822
17-03-18 04:48:12.174 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.174 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.174 -07 000000461 INF: FPGA: Recv ZSGSRD 30820
17-03-18 04:48:12.184 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.184 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30826
17-03-18 04:48:12.194 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.194 -07 000000502 INF: FPGA: Recv ZSGSRD 30825
17-03-18 04:48:12.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30824
17-03-18 04:48:12.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.214 -07 000000480 INF: FPGA: Recv ZSGSRD 30825
17-03-18 04:48:12.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:12.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30812
17-03-18 04:48:12.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.234 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:12.234 -07 000000502 INF: FPGA: Recv ZPIEZORD 26573
17-03-18 04:48:12.244 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:12.244 -07 000000606 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.3 V.
17-03-18 04:48:12.244 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30821 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30812 (-137.5 uncal um), Max = 30826 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:48:12.244 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30821, posNoise = 5, negNoise = 9
17-03-18 04:48:12.244 -07 000000606 INF: Z Motor: After move to -0.138320, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:12.244 -07 000000606 INF: Z Motor: Settle wait time = 1498 ms, measure time = 106 ms (allowed 150 ms), total time = 1604 ms
17-03-18 04:48:12.244 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:12.294 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1657 ms
17-03-18 04:48:12.294 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:12.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:12.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:12.294 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:12.294 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:12.294 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:12.294 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:12.294 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:12.294 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:12.304 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:12.304 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:12.314 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:48:12.314 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:48:12.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:12.364 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:48:12.664 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:48:12.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:48:12.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:12.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:12.704 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:12.704 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:12.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:48:12.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:12.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:12.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:12.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:12.804 -07 000000569 INF: Autofocus start
17-03-18 04:48:12.804 -07 000000569 INF: MeasureProfile start
17-03-18 04:48:12.804 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:12.804 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:12.814 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:12.814 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:12.814 -07 000000569 INF: MeasureProfile done
17-03-18 04:48:12.814 -07 000000569 INF: X=-21  Z correction [um]=-0.1056272
17-03-18 04:48:12.814 -07 000000569 INF: Autofocus finished
17-03-18 04:48:13.014 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:13.014 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:13.014 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.138323994432349. ----------
17-03-18 04:48:13.014 -07 000000610 INF: Cycle	129	Tile	5	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:13.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28706, sync = True, waitForSettling = True)
17-03-18 04:48:13.024 -07 000000610 INF: Z Motor: Moving to -0.131408 mm, started at -0.138324 mm, distance = 6.92 um
17-03-18 04:48:13.024 -07 000000610 INF: FPGA: Xmit ZDACW 28706\n [Z Motor]
17-03-18 04:48:13.024 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:48:13.034 -07 000000610 INF: FPGA: 'ZDACW 28706' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:13.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:13.034 -07 000000618 INF: FPGA: Recv ZDACR 28706
17-03-18 04:48:13.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:13.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.194 -07 000000606 INF: FPGA: Recv ZSGSRD 29739
17-03-18 04:48:13.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:13.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.204 -07 000000382 INF: FPGA: Recv ZSGSRD 29749
17-03-18 04:48:13.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.214 -07 000000626 INF: FPGA: Recv ZSGSRD 29739
17-03-18 04:48:13.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.224 -07 000000480 INF: FPGA: Recv ZSGSRD 29748
17-03-18 04:48:13.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.234 -07 000000626 INF: FPGA: Recv ZSGSRD 29750
17-03-18 04:48:13.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.244 -07 000000569 INF: FPGA: Recv ZSGSRD 29748
17-03-18 04:48:13.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:13.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.254 -07 000000618 INF: FPGA: Recv ZSGSRD 29749
17-03-18 04:48:13.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.264 -07 000000479 INF: FPGA: Recv ZSGSRD 29738
17-03-18 04:48:13.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.274 -07 000000501 INF: FPGA: Recv ZSGSRD 29745
17-03-18 04:48:13.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:13.284 -07 000000455 INF: FPGA: Recv ZSGSRD 29748
17-03-18 04:48:13.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:13.294 -07 000000467 INF: FPGA: Recv ZPIEZORD 25222
17-03-18 04:48:13.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:13.304 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -9.9 V.
17-03-18 04:48:13.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29745 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29748 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29738 (-130.6 uncal um), Max = 29750 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:48:13.304 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29745, posNoise = 5, negNoise = 7
17-03-18 04:48:13.304 -07 000000610 INF: Z Motor: After move to -0.131408, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:13.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:48:13.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:13.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:13.304 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:13.304 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:13.304 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:13.304 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:13.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:13.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:13.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:13.304 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:13.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:13.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:13.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:48:13.314 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:13.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:13.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:13.324 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:48:13.324 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:48:13.324 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:48:13.324 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:13.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28883 150\n [Camera]
17-03-18 04:48:13.524 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:13.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:13.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:13.954 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:13.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:13.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:13.954 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:13.954 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:13.954 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:13.954 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:13.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:14.144 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28883 811
17-03-18 04:48:14.294 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:14.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:48:14.354 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:48:14.364 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:48:14.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:14.364 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:14.364 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:14.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:48:14.374 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:48:14.374 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-18 04:48:14.384 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 434 ms.
17-03-18 04:48:14.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:14.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:14.494 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:14.504 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:14.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:14.504 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:14.504 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:14.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:48:14.504 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:14.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:48:14.684 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:48:14.684 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:14.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28883 150' command took 2 ms to send, 1359 ms to get response, and 1365 ms overall
17-03-18 04:48:14.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:14.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131411542167815. ------
17-03-18 04:48:14.694 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:14.694 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13773 mm
17-03-18 04:48:14.694 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:14.694 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:48:14.694 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 04:48:14.694 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30087, sync = True, waitForSettling = False)
17-03-18 04:48:14.814 -07 000000501 INF: Z Motor: Moving to -0.137729 mm, started at -0.131412 mm, distance = -6.32 um
17-03-18 04:48:14.814 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:14.814 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:14.814 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 120 ms overall
17-03-18 04:48:14.814 -07 000000424 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:48:14.824 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 04:48:14.824 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:14.824 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:14.824 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:48:14.824 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:14.834 -07 000000501 INF: FPGA: Xmit ZDACW 30087\n [Z Motor]
17-03-18 04:48:14.834 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:48:14.844 -07 000000501 INF: FPGA: 'ZDACW 30087' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:48:14.844 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:14.854 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:14.854 -07 000000625 INF: FPGA: Recv ZDACR 30087
17-03-18 04:48:14.864 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:48:14.864 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:48:14.894 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:48:14.904 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:48:14.904 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:14.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:48:14.904 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:48:14.904 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:14.904 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:14.904 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:48:14.904 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:14.914 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:48:15.024 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:15.024 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 04:48:15.214 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:48:15.214 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:48:15.264 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:15.274 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:48:15.274 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 04:48:15.274 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:15.274 -07 000000479 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:48:15.274 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:48:16.224 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:16.224 -07 000000581 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:48:16.234 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:16.234 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:16.264 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:16.264 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:16.264 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1563 ms (table move)
17-03-18 04:48:16.264 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137729 mm (DAC = 30087)
17-03-18 04:48:16.264 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.264 -07 000000625 INF: FPGA: Recv ZSGSRD 30731
17-03-18 04:48:16.274 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:16.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.274 -07 000000606 INF: FPGA: Recv ZSGSRD 30726
17-03-18 04:48:16.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.284 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.284 -07 000000447 INF: FPGA: Recv ZSGSRD 30728
17-03-18 04:48:16.294 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.294 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.294 -07 000000626 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:48:16.304 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.304 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.304 -07 000000461 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:48:16.314 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.314 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.314 -07 000000502 INF: FPGA: Recv ZSGSRD 30727
17-03-18 04:48:16.324 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.324 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.324 -07 000000480 INF: FPGA: Recv ZSGSRD 30733
17-03-18 04:48:16.334 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.334 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.334 -07 000000474 INF: FPGA: Recv ZSGSRD 30737
17-03-18 04:48:16.344 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.344 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.344 -07 000000625 INF: FPGA: Recv ZSGSRD 30728
17-03-18 04:48:16.354 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:16.354 -07 000000606 INF: FPGA: Recv ZSGSRD 30729
17-03-18 04:48:16.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.364 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:16.364 -07 000000569 INF: FPGA: Recv ZPIEZORD 26466
17-03-18 04:48:16.374 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:16.374 -07 000000618 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.4 V.
17-03-18 04:48:16.374 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30728 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30728 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30720 (-136.9 uncal um), Max = 30737 (-137.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:48:16.374 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30728, posNoise = 9, negNoise = 8
17-03-18 04:48:16.374 -07 000000618 INF: Z Motor: After move to -0.137729, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:16.374 -07 000000618 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:48:16.374 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:16.424 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 04:48:16.424 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:16.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:16.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:16.434 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:16.434 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:16.434 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:16.434 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:16.434 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:48:16.434 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:16.444 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:16.444 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:16.454 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:48:16.454 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:48:16.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:16.494 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:16.704 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:16.794 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:16.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:16.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:16.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:16.814 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.986717,
17-03-18 04:48:16.834 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:16.834 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:16.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 04:48:16.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:16.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:16.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:48:16.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:16.934 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:16.934 -07 000000467 INF: Autofocus start
17-03-18 04:48:16.934 -07 000000467 INF: MeasureProfile start
17-03-18 04:48:16.934 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:16.944 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:16.944 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:16.944 -07 000000467 INF: MeasureProfile done
17-03-18 04:48:16.944 -07 000000467 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:48:16.944 -07 000000467 INF: Autofocus finished
17-03-18 04:48:17.144 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:17.144 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:17.154 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.137726542703166. ----------
17-03-18 04:48:17.154 -07 000000610 INF: Cycle	129	Tile	6	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:17.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28582, sync = True, waitForSettling = True)
17-03-18 04:48:17.154 -07 000000610 INF: Z Motor: Moving to -0.130840 mm, started at -0.137727 mm, distance = 6.89 um
17-03-18 04:48:17.154 -07 000000610 INF: FPGA: Xmit ZDACW 28582\n [Z Motor]
17-03-18 04:48:17.154 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:48:17.164 -07 000000610 INF: FPGA: 'ZDACW 28582' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:17.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:17.164 -07 000000467 INF: FPGA: Recv ZDACR 28582
17-03-18 04:48:17.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:17.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.324 -07 000000382 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:48:17.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.334 -07 000000625 INF: FPGA: Recv ZSGSRD 29663
17-03-18 04:48:17.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.344 -07 000000512 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:48:17.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.354 -07 000000480 INF: FPGA: Recv ZSGSRD 29653
17-03-18 04:48:17.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:48:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29662
17-03-18 04:48:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.384 -07 000000618 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:48:17.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:48:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.404 -07 000000461 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:48:17.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:17.414 -07 000000467 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:48:17.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:17.424 -07 000000581 INF: FPGA: Recv ZPIEZORD 25090
17-03-18 04:48:17.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:17.434 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -10.0 V.
17-03-18 04:48:17.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29659 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29658 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29653 (-130.0 uncal um), Max = 29663 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:48:17.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29659, posNoise = 4, negNoise = 6
17-03-18 04:48:17.434 -07 000000610 INF: Z Motor: After move to -0.130840, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:17.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:48:17.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:17.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:17.434 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:17.434 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:17.434 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:17.434 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:17.434 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:17.434 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:17.434 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:17.434 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:17.434 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:17.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:17.444 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:17.444 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:17.444 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:17.444 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:17.454 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:48:17.454 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:48:17.454 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:48:17.454 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:48:17.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28759 150\n [Camera]
17-03-18 04:48:17.654 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:18.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:18.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:18.084 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:18.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:18.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:18.084 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:18.094 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:18.094 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:18.094 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:18.094 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:18.274 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28759 811
17-03-18 04:48:18.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:18.484 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:48:18.484 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:48:18.484 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:18.484 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:48:18.484 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:48:18.484 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:18.484 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:18.484 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:18.494 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:18.494 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:48:18.634 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:18.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:18.634 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:18.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:18.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:18.634 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:18.644 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:18.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:48:18.644 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:18.644 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:48:18.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:18.824 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:18.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28759 150' command took 2 ms to send, 1364 ms to get response, and 1369 ms overall
17-03-18 04:48:18.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:18.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.130859059923623. ------
17-03-18 04:48:18.834 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:18.834 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13747 mm
17-03-18 04:48:18.834 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:18.834 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:48:18.834 -07 000000581 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:48:18.834 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:18.834 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30030, sync = True, waitForSettling = False)
17-03-18 04:48:18.834 -07 000000424 INF: Z Motor: Moving to -0.137469 mm, started at -0.130859 mm, distance = -6.61 um
17-03-18 04:48:18.844 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:18.844 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:18.844 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:48:18.854 -07 000000424 INF: FPGA: Xmit ZDACW 30030\n [Z Motor]
17-03-18 04:48:18.854 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:48:18.854 -07 000000581 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:18.854 -07 000000581 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:18.854 -07 000000581 INF: Y Motor: Moving 1339 steps-14
17-03-18 04:48:18.854 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:48:18.864 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:18.864 -07 000000424 INF: FPGA: 'ZDACW 30030' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:48:18.874 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:18.884 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:18.884 -07 000000447 INF: FPGA: Recv ZDACR 30030
17-03-18 04:48:18.894 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:18.894 -07 000000424 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:48:19.034 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:48:19.034 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:48:19.034 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:19.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:48:19.034 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:48:19.034 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:19.044 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:19.044 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:19.044 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:48:19.044 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:48:19.064 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:19.064 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 04:48:19.244 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:48:19.244 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:48:19.294 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:19.304 -07 000000382 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:48:19.304 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:48:19.304 -07 000000581 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:19.304 -07 000000581 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:48:19.304 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 04:48:20.254 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:20.254 -07 000000467 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:48:20.264 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:20.264 -07 000000581 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:20.294 -07 000000581 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:20.294 -07 000000581 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:20.294 -07 000000581 INF: Y Motor: Moved to 64.8774 after 1456 ms (table move)
17-03-18 04:48:20.294 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137469 mm (DAC = 30030)
17-03-18 04:48:20.294 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.294 -07 000000447 INF: FPGA: Recv ZSGSRD 30691
17-03-18 04:48:20.304 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:20.304 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.304 -07 000000625 INF: FPGA: Recv ZSGSRD 30695
17-03-18 04:48:20.314 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.314 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.314 -07 000000467 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:48:20.324 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.324 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.324 -07 000000618 INF: FPGA: Recv ZSGSRD 30689
17-03-18 04:48:20.334 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.334 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.334 -07 000000606 INF: FPGA: Recv ZSGSRD 30684
17-03-18 04:48:20.344 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.344 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.344 -07 000000424 INF: FPGA: Recv ZSGSRD 30692
17-03-18 04:48:20.354 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.354 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.354 -07 000000502 INF: FPGA: Recv ZSGSRD 30683
17-03-18 04:48:20.364 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.364 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.364 -07 000000447 INF: FPGA: Recv ZSGSRD 30688
17-03-18 04:48:20.374 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.374 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.374 -07 000000480 INF: FPGA: Recv ZSGSRD 30692
17-03-18 04:48:20.384 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.384 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:20.384 -07 000000618 INF: FPGA: Recv ZSGSRD 30691
17-03-18 04:48:20.394 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.394 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:20.394 -07 000000581 INF: FPGA: Recv ZPIEZORD 26466
17-03-18 04:48:20.404 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:20.404 -07 000000461 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.3 V.
17-03-18 04:48:20.404 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30689 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30690 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30683 (-136.6 uncal um), Max = 30695 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:48:20.404 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30689, posNoise = 6, negNoise = 6
17-03-18 04:48:20.404 -07 000000461 INF: Z Motor: After move to -0.137469, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:20.404 -07 000000461 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:48:20.404 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:20.454 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:48:20.454 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:20.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:20.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:20.454 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:20.454 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:20.454 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:20.454 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:20.454 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:20.454 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:20.464 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:20.464 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:20.474 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:48:20.474 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:48:20.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:20.514 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:20.814 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:20.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:20.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:20.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 04:48:20.854 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:20.854 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:20.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:48:20.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:20.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:20.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:48:20.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:20.954 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:20.954 -07 000000479 INF: Autofocus start
17-03-18 04:48:20.954 -07 000000479 INF: MeasureProfile start
17-03-18 04:48:20.954 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:20.964 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:20.964 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:20.964 -07 000000479 INF: MeasureProfile done
17-03-18 04:48:20.964 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:48:20.964 -07 000000479 INF: Autofocus finished
17-03-18 04:48:21.164 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:21.164 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:48:21.164 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137475998429637. ----------
17-03-18 04:48:21.164 -07 000000610 INF: Cycle	129	Tile	7	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:21.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28525, sync = True, waitForSettling = True)
17-03-18 04:48:21.174 -07 000000610 INF: Z Motor: Moving to -0.130579 mm, started at -0.137476 mm, distance = 6.90 um
17-03-18 04:48:21.174 -07 000000610 INF: FPGA: Xmit ZDACW 28525\n [Z Motor]
17-03-18 04:48:21.174 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:48:21.184 -07 000000610 INF: FPGA: 'ZDACW 28525' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:21.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:21.184 -07 000000569 INF: FPGA: Recv ZDACR 28525
17-03-18 04:48:21.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:21.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.344 -07 000000461 INF: FPGA: Recv ZSGSRD 29619
17-03-18 04:48:21.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:21.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.354 -07 000000382 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:48:21.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.364 -07 000000502 INF: FPGA: Recv ZSGSRD 29612
17-03-18 04:48:21.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.374 -07 000000512 INF: FPGA: Recv ZSGSRD 29617
17-03-18 04:48:21.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29614
17-03-18 04:48:21.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.394 -07 000000461 INF: FPGA: Recv ZSGSRD 29617
17-03-18 04:48:21.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.404 -07 000000382 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:48:21.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.414 -07 000000480 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:48:21.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.424 -07 000000447 INF: FPGA: Recv ZSGSRD 29617
17-03-18 04:48:21.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:21.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:21.434 -07 000000474 INF: FPGA: Recv ZSGSRD 29613
17-03-18 04:48:21.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:21.444 -07 000000382 INF: FPGA: Recv ZPIEZORD 25056
17-03-18 04:48:21.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:21.454 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -10.0 V.
17-03-18 04:48:21.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29617 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29612 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:48:21.454 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 3, negNoise = 4
17-03-18 04:48:21.454 -07 000000610 INF: Z Motor: After move to -0.130579, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:21.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:48:21.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:21.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:21.454 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:21.454 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:21.454 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:21.454 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:21.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:21.454 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:21.454 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:21.454 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:21.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:21.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:21.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:21.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:21.464 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:21.464 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:21.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:48:21.464 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:21.474 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:48:21.474 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:48:21.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28701 150\n [Camera]
17-03-18 04:48:21.674 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:48:21.704 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:22.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:22.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:22.104 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:22.104 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:22.104 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:48:22.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:22.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:22.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:22.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:22.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:48:22.184 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.974486,
17-03-18 04:48:22.294 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28701 811
17-03-18 04:48:22.444 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:22.484 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:48:22.484 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:48:22.484 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:22.484 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:48:22.484 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:48:22.484 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:22.484 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:22.484 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:48:22.494 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:22.494 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:48:22.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:22.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:22.644 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:22.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:22.654 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:22.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:22.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:48:22.654 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:22.654 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:22.764 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:48:22.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:48:22.844 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:22.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28701 150' command took 2 ms to send, 1360 ms to get response, and 1365 ms overall
17-03-18 04:48:22.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:22.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130582818801528. ------
17-03-18 04:48:22.844 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13726 mm
17-03-18 04:48:22.844 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:22.844 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:22.844 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:48:22.844 -07 000000382 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 04:48:22.844 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:22.844 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29984, sync = True, waitForSettling = False)
17-03-18 04:48:22.844 -07 000000625 INF: Z Motor: Moving to -0.137258 mm, started at -0.130583 mm, distance = -6.68 um
17-03-18 04:48:22.854 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:22.854 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:22.854 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:48:22.864 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:48:22.864 -07 000000382 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:22.864 -07 000000382 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:22.864 -07 000000382 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:48:22.864 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:22.874 -07 000000625 INF: FPGA: Xmit ZDACW 29984\n [Z Motor]
17-03-18 04:48:22.874 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:48:22.884 -07 000000625 INF: FPGA: 'ZDACW 29984' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:48:22.884 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:22.894 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:22.894 -07 000000512 INF: FPGA: Recv ZDACR 29984
17-03-18 04:48:22.904 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:48:22.904 -07 000000625 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:48:23.044 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:48:23.044 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:48:23.044 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:23.044 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:23.044 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:48:23.064 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:23.064 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 215 ms overall
17-03-18 04:48:23.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:48:23.164 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 04:48:23.164 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:23.164 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:48:23.174 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 04:48:23.254 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:48:23.254 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:48:23.314 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:23.314 -07 000000618 INF: FPGA: Recv YRDPOS 134579
17-03-18 04:48:23.324 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:23.324 -07 000000382 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:23.324 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:48:23.324 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 04:48:24.274 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:24.274 -07 000000424 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:48:24.284 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:24.284 -07 000000382 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:24.324 -07 000000382 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:24.324 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:48:24.324 -07 000000382 INF: Y Motor: Moved to 65.7129 after 1472 ms (table move)
17-03-18 04:48:24.324 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137258 mm (DAC = 29984)
17-03-18 04:48:24.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.324 -07 000000606 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:48:24.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:24.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.334 -07 000000625 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:48:24.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:48:24.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.354 -07 000000382 INF: FPGA: Recv ZSGSRD 30652
17-03-18 04:48:24.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.364 -07 000000606 INF: FPGA: Recv ZSGSRD 30658
17-03-18 04:48:24.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.374 -07 000000501 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:48:24.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.384 -07 000000512 INF: FPGA: Recv ZSGSRD 30656
17-03-18 04:48:24.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.394 -07 000000382 INF: FPGA: Recv ZSGSRD 30656
17-03-18 04:48:24.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.404 -07 000000606 INF: FPGA: Recv ZSGSRD 30656
17-03-18 04:48:24.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:24.414 -07 000000501 INF: FPGA: Recv ZSGSRD 30655
17-03-18 04:48:24.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.424 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:24.424 -07 000000512 INF: FPGA: Recv ZPIEZORD 26438
17-03-18 04:48:24.434 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:24.434 -07 000000626 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.575 V. Piezo Error = -9.3 V.
17-03-18 04:48:24.434 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30654 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30654 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30651 (-136.4 uncal um), Max = 30658 (-136.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:48:24.434 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30654, posNoise = 4, negNoise = 3
17-03-18 04:48:24.434 -07 000000626 INF: Z Motor: After move to -0.137258, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:24.434 -07 000000626 INF: Z Motor: Settle wait time = 1475 ms, measure time = 106 ms (allowed 150 ms), total time = 1581 ms
17-03-18 04:48:24.434 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:24.484 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 04:48:24.484 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:24.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:24.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:24.494 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:24.494 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:24.494 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:24.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:24.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:24.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:24.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:24.494 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:24.504 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:48:24.504 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:48:24.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:24.554 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:24.854 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:24.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:24.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:24.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:24.894 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:24.894 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:24.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 04:48:24.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:24.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:24.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:24.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:24.994 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:24.994 -07 000000581 INF: Autofocus start
17-03-18 04:48:24.994 -07 000000581 INF: MeasureProfile start
17-03-18 04:48:24.994 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:25.004 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:25.004 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:25.004 -07 000000581 INF: MeasureProfile done
17-03-18 04:48:25.004 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:48:25.004 -07 000000581 INF: Autofocus finished
17-03-18 04:48:25.204 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:25.204 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:25.204 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137251151004675. ----------
17-03-18 04:48:25.204 -07 000000610 INF: Cycle	129	Tile	8	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:25.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28491, sync = True, waitForSettling = True)
17-03-18 04:48:25.214 -07 000000610 INF: Z Motor: Moving to -0.130423 mm, started at -0.137251 mm, distance = 6.83 um
17-03-18 04:48:25.214 -07 000000610 INF: FPGA: Xmit ZDACW 28491\n [Z Motor]
17-03-18 04:48:25.214 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:48:25.224 -07 000000610 INF: FPGA: 'ZDACW 28491' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:25.224 -07 000000479 INF: FPGA: Recv ZDACR 28491
17-03-18 04:48:25.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:25.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.384 -07 000000474 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:48:25.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.394 -07 000000581 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:48:25.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.404 -07 000000502 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:48:25.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.414 -07 000000606 INF: FPGA: Recv ZSGSRD 29591
17-03-18 04:48:25.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.424 -07 000000512 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:48:25.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:48:25.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.444 -07 000000479 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:48:25.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.454 -07 000000501 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:48:25.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.464 -07 000000480 INF: FPGA: Recv ZSGSRD 29585
17-03-18 04:48:25.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:25.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:48:25.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:25.484 -07 000000447 INF: FPGA: Recv ZPIEZORD 25050
17-03-18 04:48:25.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:25.494 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -10.0 V.
17-03-18 04:48:25.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29592 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29592 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29585 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:48:25.494 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29592, posNoise = 5, negNoise = 7
17-03-18 04:48:25.494 -07 000000610 INF: Z Motor: After move to -0.130423, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:25.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:48:25.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:25.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:25.494 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:25.494 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:25.494 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:25.494 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:25.494 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:25.494 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:25.494 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:25.494 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:25.494 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:25.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:25.504 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:25.504 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:25.504 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:25.504 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:25.514 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:48:25.514 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:48:25.514 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:48:25.514 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:25.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28668 150\n [Camera]
17-03-18 04:48:25.714 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:26.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:26.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:26.144 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:26.144 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:26.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:26.144 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:26.144 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:26.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:26.154 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:26.154 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:26.334 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28668 811
17-03-18 04:48:26.484 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:26.524 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:48:26.524 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:48:26.524 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:26.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:48:26.524 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:48:26.524 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:26.534 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:26.534 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:26.534 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:48:26.534 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:48:26.684 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:26.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:26.694 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:26.694 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:26.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:26.694 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:26.694 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:26.694 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:48:26.694 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:26.694 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:48:26.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:26.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:48:26.884 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:26.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28668 150' command took 2 ms to send, 1361 ms to get response, and 1365 ms overall
17-03-18 04:48:26.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:26.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130428637710125. ------
17-03-18 04:48:27.004 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:27.004 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13689 mm
17-03-18 04:48:27.004 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:27.004 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29904, sync = True, waitForSettling = False)
17-03-18 04:48:27.004 -07 000000424 INF: Z Motor: Moving to -0.136892 mm, started at -0.130429 mm, distance = -6.46 um
17-03-18 04:48:27.004 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:48:27.004 -07 000000474 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:48:27.004 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:27.014 -07 000000424 INF: FPGA: Xmit ZDACW 29904\n [Z Motor]
17-03-18 04:48:27.014 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:27.014 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:48:27.024 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:27.024 -07 000000424 INF: FPGA: 'ZDACW 29904' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:48:27.024 -07 000000455 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:48:27.034 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:48:27.034 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:27.034 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:27.034 -07 000000474 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:27.034 -07 000000474 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:48:27.044 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:27.044 -07 000000479 INF: FPGA: Recv ZDACR 29904
17-03-18 04:48:27.054 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:27.054 -07 000000424 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:48:27.054 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:27.094 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:48:27.094 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:48:27.094 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:27.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:48:27.094 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:48:27.094 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:27.094 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:27.094 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:48:27.094 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:27.104 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:48:27.234 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:27.234 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:48:27.424 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:48:27.424 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:48:27.474 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:27.484 -07 000000626 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:48:27.484 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:48:27.484 -07 000000474 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:27.484 -07 000000474 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:48:27.484 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:48:27.624 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.964938,
17-03-18 04:48:28.434 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:28.434 -07 000000447 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:48:28.444 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:28.444 -07 000000474 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:28.474 -07 000000474 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:28.474 -07 000000474 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:48:28.474 -07 000000474 INF: Y Motor: Moved to 66.5381 after 1467 ms (table move)
17-03-18 04:48:28.474 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136892 mm (DAC = 29904)
17-03-18 04:48:28.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.474 -07 000000382 INF: FPGA: Recv ZSGSRD 30604
17-03-18 04:48:28.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:48:28.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.484 -07 000000480 INF: FPGA: Recv ZSGSRD 30603
17-03-18 04:48:28.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:28.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.494 -07 000000479 INF: FPGA: Recv ZSGSRD 30603
17-03-18 04:48:28.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.504 -07 000000502 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:48:28.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.514 -07 000000424 INF: FPGA: Recv ZSGSRD 30600
17-03-18 04:48:28.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.524 -07 000000625 INF: FPGA: Recv ZSGSRD 30598
17-03-18 04:48:28.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.534 -07 000000626 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:48:28.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.544 -07 000000618 INF: FPGA: Recv ZSGSRD 30601
17-03-18 04:48:28.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.554 -07 000000455 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:48:28.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:28.564 -07 000000502 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:48:28.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.574 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:28.574 -07 000000382 INF: FPGA: Recv ZPIEZORD 26349
17-03-18 04:48:28.584 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:28.584 -07 000000467 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.3 V.
17-03-18 04:48:28.584 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30598 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30599 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30592 (-136.1 uncal um), Max = 30604 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:48:28.584 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30598, posNoise = 6, negNoise = 6
17-03-18 04:48:28.584 -07 000000467 INF: Z Motor: After move to -0.136892, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:28.584 -07 000000467 INF: Z Motor: Settle wait time = 1471 ms, measure time = 104 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:48:28.584 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:28.634 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:48:28.634 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:28.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:28.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:28.634 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:28.644 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:28.644 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:28.644 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:28.644 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:28.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:28.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:28.654 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:28.664 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:48:28.664 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:48:28.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:28.714 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:29.014 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:29.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:29.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:29.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:29.054 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:29.054 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:29.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 04:48:29.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:48:29.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:29.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:29.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:48:29.154 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:29.154 -07 000000382 INF: Autofocus start
17-03-18 04:48:29.154 -07 000000382 INF: MeasureProfile start
17-03-18 04:48:29.154 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:29.164 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:29.164 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:29.164 -07 000000382 INF: MeasureProfile done
17-03-18 04:48:29.164 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:48:29.164 -07 000000382 INF: Autofocus finished
17-03-18 04:48:29.364 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:29.364 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 04:48:29.374 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.136891395124737. ----------
17-03-18 04:48:29.374 -07 000000610 INF: Cycle	129	Tile	9	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:29.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28398, sync = True, waitForSettling = True)
17-03-18 04:48:29.374 -07 000000610 INF: Z Motor: Moving to -0.129998 mm, started at -0.136891 mm, distance = 6.89 um
17-03-18 04:48:29.374 -07 000000610 INF: FPGA: Xmit ZDACW 28398\n [Z Motor]
17-03-18 04:48:29.374 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:48:29.384 -07 000000610 INF: FPGA: 'ZDACW 28398' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:29.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:29.384 -07 000000479 INF: FPGA: Recv ZDACR 28398
17-03-18 04:48:29.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:29.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.544 -07 000000474 INF: FPGA: Recv ZSGSRD 29527
17-03-18 04:48:29.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:29.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:48:29.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.564 -07 000000569 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:48:29.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.574 -07 000000501 INF: FPGA: Recv ZSGSRD 29525
17-03-18 04:48:29.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.584 -07 000000626 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:48:29.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.594 -07 000000467 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:48:29.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.604 -07 000000581 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:48:29.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.614 -07 000000569 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:48:29.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:48:29.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:29.634 -07 000000480 INF: FPGA: Recv ZSGSRD 29521
17-03-18 04:48:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:29.644 -07 000000467 INF: FPGA: Recv ZPIEZORD 24967
17-03-18 04:48:29.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:29.654 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.0 V.
17-03-18 04:48:29.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29525 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29521 (-129.2 uncal um), Max = 29531 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:48:29.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29525, posNoise = 6, negNoise = 4
17-03-18 04:48:29.654 -07 000000610 INF: Z Motor: After move to -0.129998, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:29.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:48:29.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:29.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:29.654 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:29.654 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:29.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:29.654 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:29.654 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:29.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:29.654 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:29.654 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:29.654 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:29.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:29.664 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:29.664 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:29.664 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:48:29.664 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:29.664 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:48:29.664 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:48:29.674 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:48:29.674 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:48:29.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28575 150\n [Camera]
17-03-18 04:48:29.874 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:30.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:30.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:30.304 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:30.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:30.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:30.304 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:30.304 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:30.304 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:30.304 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:30.314 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:30.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28575 811
17-03-18 04:48:30.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:30.684 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:48:30.684 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:48:30.684 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:30.684 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:48:30.684 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:48:30.684 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:30.684 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:30.684 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:30.684 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:48:30.694 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:48:30.844 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:30.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:30.844 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:30.854 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:30.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:30.854 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:30.854 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:30.854 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:48:30.854 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:30.854 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:48:31.034 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:48:31.044 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:31.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28575 150' command took 2 ms to send, 1360 ms to get response, and 1365 ms overall
17-03-18 04:48:31.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:31.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.129998215496627. ------
17-03-18 04:48:31.044 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:31.044 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13679 mm
17-03-18 04:48:31.044 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:31.044 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:31.054 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:31.054 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29882, sync = True, waitForSettling = False)
17-03-18 04:48:31.054 -07 000000569 INF: Z Motor: Moving to -0.136791 mm, started at -0.129998 mm, distance = -6.79 um
17-03-18 04:48:31.054 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:31.054 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:48:31.054 -07 000000581 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:48:31.064 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:31.064 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:48:31.074 -07 000000569 INF: FPGA: Xmit ZDACW 29882\n [Z Motor]
17-03-18 04:48:31.074 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:48:31.074 -07 000000581 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:31.074 -07 000000581 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:31.074 -07 000000581 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:48:31.074 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:48:31.084 -07 000000569 INF: FPGA: 'ZDACW 29882' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:31.084 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:31.084 -07 000000502 INF: FPGA: Recv ZDACR 29882
17-03-18 04:48:31.094 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:31.094 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:31.094 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:48:31.254 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:31.254 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:48:31.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:48:31.254 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:48:31.254 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:31.254 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:48:31.254 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:48:31.254 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:31.264 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:31.264 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:48:31.264 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:31.264 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:48:31.464 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:48:31.464 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:48:31.514 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:31.514 -07 000000569 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:48:31.524 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:48:31.524 -07 000000581 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:31.524 -07 000000581 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:48:31.524 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 04:48:31.704 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:32.474 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:32.474 -07 000000502 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:48:32.484 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.484 -07 000000581 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:32.514 -07 000000581 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:32.514 -07 000000581 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:32.514 -07 000000581 INF: Y Motor: Moved to 67.3711 after 1461 ms (table move)
17-03-18 04:48:32.514 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136791 mm (DAC = 29882)
17-03-18 04:48:32.514 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.514 -07 000000455 INF: FPGA: Recv ZSGSRD 30587
17-03-18 04:48:32.524 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:48:32.524 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.524 -07 000000474 INF: FPGA: Recv ZSGSRD 30588
17-03-18 04:48:32.534 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.534 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.534 -07 000000512 INF: FPGA: Recv ZSGSRD 30583
17-03-18 04:48:32.544 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.544 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.544 -07 000000461 INF: FPGA: Recv ZSGSRD 30578
17-03-18 04:48:32.554 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.554 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.554 -07 000000625 INF: FPGA: Recv ZSGSRD 30575
17-03-18 04:48:32.564 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.564 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.564 -07 000000501 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:48:32.574 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.574 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.574 -07 000000626 INF: FPGA: Recv ZSGSRD 30585
17-03-18 04:48:32.584 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.584 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.584 -07 000000467 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:48:32.594 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.594 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.594 -07 000000382 INF: FPGA: Recv ZSGSRD 30583
17-03-18 04:48:32.604 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.604 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:32.604 -07 000000625 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:48:32.614 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.614 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:32.614 -07 000000579 INF: FPGA: Recv ZPIEZORD 26399
17-03-18 04:48:32.624 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:32.624 -07 000000480 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.2 V.
17-03-18 04:48:32.624 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30583 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30575 (-135.9 uncal um), Max = 30591 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:48:32.624 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 8, negNoise = 8
17-03-18 04:48:32.624 -07 000000480 INF: Z Motor: After move to -0.136791, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:32.624 -07 000000480 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 04:48:32.624 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:32.674 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:48:32.674 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:32.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:32.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:32.674 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:32.684 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:32.684 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:32.684 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:32.684 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:32.684 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:32.684 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:32.684 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:32.694 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:48:32.694 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:48:32.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:32.744 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:32.994 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.989471,
17-03-18 04:48:33.044 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:33.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:33.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:33.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-18 04:48:33.084 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:33.084 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:33.084 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 390 ms overall
17-03-18 04:48:33.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:48:33.164 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:33.164 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:33.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:48:33.184 -07 000000455 INF: Autofocus start
17-03-18 04:48:33.184 -07 000000455 INF: MeasureProfile start
17-03-18 04:48:33.184 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:33.184 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:33.194 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:33.194 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:33.194 -07 000000455 INF: MeasureProfile done
17-03-18 04:48:33.204 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:48:33.204 -07 000000455 INF: Autofocus finished
17-03-18 04:48:33.394 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:33.394 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:33.394 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13679503194261. ----------
17-03-18 04:48:33.394 -07 000000610 INF: Cycle	129	Tile	10	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:33.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28406, sync = True, waitForSettling = True)
17-03-18 04:48:33.404 -07 000000610 INF: Z Motor: Moving to -0.130034 mm, started at -0.136795 mm, distance = 6.76 um
17-03-18 04:48:33.404 -07 000000610 INF: FPGA: Xmit ZDACW 28406\n [Z Motor]
17-03-18 04:48:33.404 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:48:33.414 -07 000000610 INF: FPGA: 'ZDACW 28406' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:33.414 -07 000000480 INF: FPGA: Recv ZDACR 28406
17-03-18 04:48:33.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:33.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.574 -07 000000618 INF: FPGA: Recv ZSGSRD 29532
17-03-18 04:48:33.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:33.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.584 -07 000000625 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:48:33.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.594 -07 000000618 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:48:33.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.604 -07 000000480 INF: FPGA: Recv ZSGSRD 29535
17-03-18 04:48:33.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.614 -07 000000626 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:48:33.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.624 -07 000000618 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:48:33.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.634 -07 000000569 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:48:33.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:48:33.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.654 -07 000000479 INF: FPGA: Recv ZSGSRD 29532
17-03-18 04:48:33.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:33.664 -07 000000625 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:48:33.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:33.674 -07 000000512 INF: FPGA: Recv ZPIEZORD 24971
17-03-18 04:48:33.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:33.684 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.0 V.
17-03-18 04:48:33.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29531 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29528 (-129.2 uncal um), Max = 29537 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:48:33.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 6, negNoise = 3
17-03-18 04:48:33.684 -07 000000610 INF: Z Motor: After move to -0.130034, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:33.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:48:33.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:33.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:33.684 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:33.684 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:33.684 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:33.684 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:33.684 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:33.684 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:33.684 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:48:33.684 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:33.684 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:33.684 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:33.694 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:33.694 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:33.694 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:33.694 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:33.694 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:48:33.694 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:48:33.704 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:48:33.704 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:48:33.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28582 150\n [Camera]
17-03-18 04:48:33.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:34.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:34.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:34.334 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:34.334 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:34.334 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:48:34.334 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:34.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:34.334 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:34.334 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:34.334 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:48:34.524 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28582 811
17-03-18 04:48:34.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:34.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:48:34.724 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:48:34.724 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:34.734 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:48:34.734 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:48:34.734 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:34.734 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:34.734 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:34.734 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:34.744 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:48:34.874 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:34.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:34.884 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:34.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:34.884 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:34.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:34.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:48:34.884 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:34.884 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:34.884 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:48:35.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:48:35.074 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:35.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28582 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-18 04:48:35.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:35.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130036760769478. ------
17-03-18 04:48:35.194 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:35.194 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13640 mm
17-03-18 04:48:35.194 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:35.194 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:48:35.194 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:48:35.194 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:35.194 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29797, sync = True, waitForSettling = False)
17-03-18 04:48:35.194 -07 000000569 INF: Z Motor: Moving to -0.136402 mm, started at -0.130037 mm, distance = -6.37 um
17-03-18 04:48:35.204 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:35.204 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:35.204 -07 000000447 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:48:35.214 -07 000000569 INF: FPGA: Xmit ZDACW 29797\n [Z Motor]
17-03-18 04:48:35.214 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:48:35.214 -07 000000455 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:35.214 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:35.214 -07 000000455 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:48:35.214 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:48:35.224 -07 000000569 INF: FPGA: 'ZDACW 29797' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:48:35.224 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:35.234 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:35.244 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:35.244 -07 000000581 INF: FPGA: Recv ZDACR 29797
17-03-18 04:48:35.254 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:35.254 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:48:35.274 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:48:35.274 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:48:35.274 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:35.274 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:48:35.274 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:48:35.274 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:35.284 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:35.284 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:35.284 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:35.294 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:48:35.424 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:35.424 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:48:35.604 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:48:35.604 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:48:35.654 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:35.664 -07 000000474 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:48:35.664 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:48:35.664 -07 000000455 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:35.664 -07 000000455 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:48:35.664 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 04:48:36.614 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:36.614 -07 000000579 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:48:36.624 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:36.624 -07 000000455 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:36.654 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:36.654 -07 000000455 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:36.654 -07 000000455 INF: Y Motor: Moved to 68.2036 after 1456 ms (table move)
17-03-18 04:48:36.654 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136402 mm (DAC = 29797)
17-03-18 04:48:36.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.654 -07 000000474 INF: FPGA: Recv ZSGSRD 30525
17-03-18 04:48:36.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:36.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.664 -07 000000480 INF: FPGA: Recv ZSGSRD 30523
17-03-18 04:48:36.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.674 -07 000000569 INF: FPGA: Recv ZSGSRD 30518
17-03-18 04:48:36.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.684 -07 000000479 INF: FPGA: Recv ZSGSRD 30517
17-03-18 04:48:36.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.694 -07 000000626 INF: FPGA: Recv ZSGSRD 30519
17-03-18 04:48:36.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.704 -07 000000501 INF: FPGA: Recv ZSGSRD 30519
17-03-18 04:48:36.704 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:36.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:36.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.714 -07 000000479 INF: FPGA: Recv ZSGSRD 30524
17-03-18 04:48:36.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.724 -07 000000581 INF: FPGA: Recv ZSGSRD 30527
17-03-18 04:48:36.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.734 -07 000000467 INF: FPGA: Recv ZSGSRD 30525
17-03-18 04:48:36.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:36.744 -07 000000447 INF: FPGA: Recv ZSGSRD 30527
17-03-18 04:48:36.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.754 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:36.754 -07 000000502 INF: FPGA: Recv ZPIEZORD 26284
17-03-18 04:48:36.764 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:36.764 -07 000000424 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.3 V.
17-03-18 04:48:36.764 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30522 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30517 (-135.6 uncal um), Max = 30527 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:48:36.764 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30522, posNoise = 5, negNoise = 5
17-03-18 04:48:36.764 -07 000000424 INF: Z Motor: After move to -0.136402, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:36.764 -07 000000424 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:48:36.764 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:36.814 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:48:36.814 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:36.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:36.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:36.814 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:36.814 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:36.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:36.814 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:36.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:36.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:36.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:48:36.824 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:36.834 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:48:36.834 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:48:36.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:36.884 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:48:37.184 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:48:37.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:48:37.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:37.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:37.214 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:37.224 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:37.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:48:37.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:37.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:37.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:37.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:37.324 -07 000000424 INF: Autofocus start
17-03-18 04:48:37.324 -07 000000424 INF: MeasureProfile start
17-03-18 04:48:37.324 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:37.324 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:37.334 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:37.334 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:37.344 -07 000000424 INF: MeasureProfile done
17-03-18 04:48:37.344 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:48:37.344 -07 000000424 INF: Autofocus finished
17-03-18 04:48:37.534 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:37.534 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:37.534 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.136403155001963. ----------
17-03-18 04:48:37.534 -07 000000610 INF: Cycle	129	Tile	11	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:37.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28304, sync = True, waitForSettling = True)
17-03-18 04:48:37.544 -07 000000610 INF: Z Motor: Moving to -0.129567 mm, started at -0.136403 mm, distance = 6.84 um
17-03-18 04:48:37.544 -07 000000610 INF: FPGA: Xmit ZDACW 28304\n [Z Motor]
17-03-18 04:48:37.544 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:48:37.554 -07 000000610 INF: FPGA: 'ZDACW 28304' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:37.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:37.554 -07 000000447 INF: FPGA: Recv ZDACR 28304
17-03-18 04:48:37.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:37.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.714 -07 000000501 INF: FPGA: Recv ZSGSRD 29457
17-03-18 04:48:37.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:37.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29460
17-03-18 04:48:37.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.744 -07 000000480 INF: FPGA: Recv ZSGSRD 29457
17-03-18 04:48:37.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:48:37.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.754 -07 000000512 INF: FPGA: Recv ZSGSRD 29464
17-03-18 04:48:37.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.764 -07 000000480 INF: FPGA: Recv ZSGSRD 29456
17-03-18 04:48:37.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.774 -07 000000447 INF: FPGA: Recv ZSGSRD 29456
17-03-18 04:48:37.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.784 -07 000000479 INF: FPGA: Recv ZSGSRD 29464
17-03-18 04:48:37.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.794 -07 000000569 INF: FPGA: Recv ZSGSRD 29462
17-03-18 04:48:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.804 -07 000000474 INF: FPGA: Recv ZSGSRD 29451
17-03-18 04:48:37.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:37.814 -07 000000382 INF: FPGA: Recv ZSGSRD 29462
17-03-18 04:48:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:37.824 -07 000000447 INF: FPGA: Recv ZPIEZORD 24894
17-03-18 04:48:37.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:37.834 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -10.0 V.
17-03-18 04:48:37.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29451 (-128.7 uncal um), Max = 29464 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:48:37.834 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 5, negNoise = 8
17-03-18 04:48:37.834 -07 000000610 INF: Z Motor: After move to -0.129567, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:37.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:48:37.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:37.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:37.834 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:37.834 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:37.834 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:37.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:37.834 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:37.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:37.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:37.834 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:37.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:37.834 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:37.844 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:48:37.844 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:37.844 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:37.844 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:37.854 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:48:37.854 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:48:37.854 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:48:37.854 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:37.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28481 150\n [Camera]
17-03-18 04:48:38.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:38.364 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.994908,
17-03-18 04:48:38.484 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-18 04:48:38.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-18 04:48:38.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:38.484 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-18 04:48:38.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-18 04:48:38.484 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:38.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:38.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:38.494 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:38.494 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:38.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 811
17-03-18 04:48:38.824 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:38.874 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:48:38.874 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:48:38.874 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:48:38.874 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:38.874 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:48:38.874 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:38.874 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:48:38.884 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:38.884 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:48:38.884 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:48:39.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:39.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:39.024 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:39.034 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:39.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:39.034 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:39.034 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:39.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:48:39.034 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:39.034 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:48:39.214 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:39.214 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:39.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28481 150' command took 2 ms to send, 1359 ms to get response, and 1365 ms overall
17-03-18 04:48:39.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:39.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.129574217495271. ------
17-03-18 04:48:39.224 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13622 mm
17-03-18 04:48:39.224 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:39.224 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:39.344 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:39.344 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 04:48:39.344 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29757, sync = True, waitForSettling = False)
17-03-18 04:48:39.344 -07 000000606 INF: Z Motor: Moving to -0.136219 mm, started at -0.129574 mm, distance = -6.64 um
17-03-18 04:48:39.344 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:39.344 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:48:39.344 -07 000000579 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 04:48:39.354 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:39.354 -07 000000480 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:48:39.364 -07 000000606 INF: FPGA: Xmit ZDACW 29757\n [Z Motor]
17-03-18 04:48:39.364 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:48:39.364 -07 000000579 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:39.364 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:48:39.364 -07 000000579 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:39.364 -07 000000579 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:48:39.374 -07 000000606 INF: FPGA: 'ZDACW 29757' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:48:39.374 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:39.374 -07 000000569 INF: FPGA: Recv ZDACR 29757
17-03-18 04:48:39.384 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:39.384 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:39.384 -07 000000606 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:48:39.434 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:48:39.434 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:48:39.434 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:39.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:48:39.434 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:48:39.434 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:39.434 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:39.434 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:48:39.434 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:39.444 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:48:39.544 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:39.544 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:48:39.754 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:48:39.754 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:48:39.804 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:39.804 -07 000000626 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:48:39.814 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:48:39.814 -07 000000579 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:39.814 -07 000000579 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:48:39.814 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-18 04:48:40.764 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:40.764 -07 000000455 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:48:40.774 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:40.774 -07 000000579 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:40.804 -07 000000579 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:40.804 -07 000000579 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:40.804 -07 000000579 INF: Y Motor: Moved to 69.0259 after 1458 ms (table move)
17-03-18 04:48:40.804 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136219 mm (DAC = 29757)
17-03-18 04:48:40.804 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.804 -07 000000608 INF: FPGA: Recv ZSGSRD 30500
17-03-18 04:48:40.814 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:40.814 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.814 -07 000000512 INF: FPGA: Recv ZSGSRD 30491
17-03-18 04:48:40.824 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.824 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30488
17-03-18 04:48:40.834 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.834 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.834 -07 000000461 INF: FPGA: Recv ZSGSRD 30490
17-03-18 04:48:40.844 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.844 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.844 -07 000000480 INF: FPGA: Recv ZSGSRD 30485
17-03-18 04:48:40.854 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.854 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.854 -07 000000424 INF: FPGA: Recv ZSGSRD 30498
17-03-18 04:48:40.864 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.864 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.864 -07 000000455 INF: FPGA: Recv ZSGSRD 30498
17-03-18 04:48:40.874 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.874 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.874 -07 000000474 INF: FPGA: Recv ZSGSRD 30496
17-03-18 04:48:40.884 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.884 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.884 -07 000000467 INF: FPGA: Recv ZSGSRD 30501
17-03-18 04:48:40.894 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.894 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:40.894 -07 000000579 INF: FPGA: Recv ZSGSRD 30491
17-03-18 04:48:40.904 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.904 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:40.904 -07 000000581 INF: FPGA: Recv ZPIEZORD 26240
17-03-18 04:48:40.914 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:40.914 -07 000000625 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.541 V. Piezo Error = -9.4 V.
17-03-18 04:48:40.914 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30494 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30494 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30485 (-135.4 uncal um), Max = 30501 (-135.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:48:40.914 -07 000000625 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30494, posNoise = 7, negNoise = 9
17-03-18 04:48:40.914 -07 000000625 INF: Z Motor: After move to -0.136219, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:40.914 -07 000000625 INF: Z Motor: Settle wait time = 1463 ms, measure time = 105 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:48:40.914 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:40.964 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 04:48:40.964 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:40.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:40.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:40.964 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:40.964 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:40.964 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:40.964 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:40.964 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:40.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:40.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:40.974 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:40.974 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:48:40.974 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:48:40.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:41.024 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:41.324 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:41.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:41.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:41.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:41.364 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:41.364 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:41.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 04:48:41.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:48:41.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:41.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:41.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:48:41.464 -07 000000479 INF: Autofocus start
17-03-18 04:48:41.464 -07 000000479 INF: MeasureProfile start
17-03-18 04:48:41.464 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:41.474 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:41.474 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:41.474 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:41.474 -07 000000479 INF: MeasureProfile done
17-03-18 04:48:41.474 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:48:41.474 -07 000000479 INF: Autofocus finished
17-03-18 04:48:41.674 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:41.674 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:41.674 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136223277061994. ----------
17-03-18 04:48:41.684 -07 000000610 INF: Cycle	129	Tile	12	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:41.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28265, sync = True, waitForSettling = True)
17-03-18 04:48:41.684 -07 000000610 INF: Z Motor: Moving to -0.129389 mm, started at -0.136223 mm, distance = 6.83 um
17-03-18 04:48:41.684 -07 000000610 INF: FPGA: Xmit ZDACW 28265\n [Z Motor]
17-03-18 04:48:41.684 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:48:41.694 -07 000000610 INF: FPGA: 'ZDACW 28265' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:41.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:41.694 -07 000000479 INF: FPGA: Recv ZDACR 28265
17-03-18 04:48:41.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:41.704 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:41.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:41.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.854 -07 000000579 INF: FPGA: Recv ZSGSRD 29432
17-03-18 04:48:41.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:41.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.864 -07 000000382 INF: FPGA: Recv ZSGSRD 29431
17-03-18 04:48:41.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29435
17-03-18 04:48:41.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.884 -07 000000581 INF: FPGA: Recv ZSGSRD 29426
17-03-18 04:48:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.894 -07 000000461 INF: FPGA: Recv ZSGSRD 29433
17-03-18 04:48:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29435
17-03-18 04:48:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.914 -07 000000479 INF: FPGA: Recv ZSGSRD 29427
17-03-18 04:48:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.924 -07 000000502 INF: FPGA: Recv ZSGSRD 29426
17-03-18 04:48:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.934 -07 000000581 INF: FPGA: Recv ZSGSRD 29427
17-03-18 04:48:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:41.944 -07 000000501 INF: FPGA: Recv ZSGSRD 29430
17-03-18 04:48:41.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:41.954 -07 000000579 INF: FPGA: Recv ZPIEZORD 24853
17-03-18 04:48:41.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:41.964 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -10.0 V.
17-03-18 04:48:41.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29430 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29430 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29426 (-128.6 uncal um), Max = 29435 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:48:41.964 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29430, posNoise = 5, negNoise = 4
17-03-18 04:48:41.964 -07 000000610 INF: Z Motor: After move to -0.129389, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:41.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:48:41.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:41.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:41.964 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:41.964 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:41.964 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:41.964 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:41.964 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:41.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:41.964 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:41.964 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:41.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:41.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:41.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:41.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:41.974 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:41.974 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:41.984 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:48:41.984 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:48:41.984 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:48:41.984 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:48:41.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28441 150\n [Camera]
17-03-18 04:48:42.194 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:42.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:42.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:42.614 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:42.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:42.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:42.624 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:42.624 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:42.624 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:42.624 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:42.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:42.804 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28441 811
17-03-18 04:48:42.954 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:43.014 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:48:43.014 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:48:43.014 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:43.014 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:48:43.014 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:48:43.014 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:43.024 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:43.024 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:48:43.024 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:43.024 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:48:43.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:43.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:43.164 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:43.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:43.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:43.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:43.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:48:43.174 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:43.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:43.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:48:43.354 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:48:43.354 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:43.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28441 150' command took 2 ms to send, 1356 ms to get response, and 1365 ms overall
17-03-18 04:48:43.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:43.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.12938791534316. ------
17-03-18 04:48:43.364 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:43.364 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13576 mm
17-03-18 04:48:43.364 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:43.364 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:48:43.364 -07 000000579 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:48:43.364 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29656, sync = True, waitForSettling = False)
17-03-18 04:48:43.364 -07 000000474 INF: Z Motor: Moving to -0.135756 mm, started at -0.129388 mm, distance = -6.37 um
17-03-18 04:48:43.374 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:43.374 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:43.374 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:43.374 -07 000000626 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:48:43.384 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:48:43.384 -07 000000579 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:43.384 -07 000000579 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:43.384 -07 000000579 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:48:43.384 -07 000000474 INF: FPGA: Xmit ZDACW 29656\n [Z Motor]
17-03-18 04:48:43.384 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:48:43.394 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:43.394 -07 000000474 INF: FPGA: 'ZDACW 29656' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:48:43.404 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:43.414 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:43.414 -07 000000480 INF: FPGA: Recv ZDACR 29656
17-03-18 04:48:43.424 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:43.424 -07 000000474 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:48:43.554 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:48:43.564 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:48:43.564 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:43.564 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:48:43.564 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:48:43.564 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:43.564 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:43.564 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:43.564 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:48:43.574 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:48:43.594 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:43.594 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:48:43.754 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.014009,
17-03-18 04:48:43.784 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:48:43.784 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-18 04:48:43.834 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:43.834 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:48:43.844 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:43.844 -07 000000579 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:43.844 -07 000000579 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:48:43.844 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.847 mm, average velocity = 2.112 mm/sec
17-03-18 04:48:44.794 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:44.794 -07 000000461 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:48:44.804 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.804 -07 000000579 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:44.834 -07 000000579 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:44.834 -07 000000579 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:44.834 -07 000000579 INF: Y Motor: Moved to 69.8623 after 1464 ms (table move)
17-03-18 04:48:44.834 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135756 mm (DAC = 29656)
17-03-18 04:48:44.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.834 -07 000000501 INF: FPGA: Recv ZSGSRD 30426
17-03-18 04:48:44.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:44.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30422
17-03-18 04:48:44.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.854 -07 000000569 INF: FPGA: Recv ZSGSRD 30426
17-03-18 04:48:44.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.864 -07 000000618 INF: FPGA: Recv ZSGSRD 30418
17-03-18 04:48:44.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.874 -07 000000447 INF: FPGA: Recv ZSGSRD 30418
17-03-18 04:48:44.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.884 -07 000000626 INF: FPGA: Recv ZSGSRD 30426
17-03-18 04:48:44.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.894 -07 000000581 INF: FPGA: Recv ZSGSRD 30430
17-03-18 04:48:44.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.904 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.904 -07 000000455 INF: FPGA: Recv ZSGSRD 30425
17-03-18 04:48:44.914 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.914 -07 000000579 INF: FPGA: Recv ZSGSRD 30420
17-03-18 04:48:44.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:44.924 -07 000000618 INF: FPGA: Recv ZSGSRD 30423
17-03-18 04:48:44.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.934 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:44.934 -07 000000447 INF: FPGA: Recv ZPIEZORD 26184
17-03-18 04:48:44.944 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:44.944 -07 000000467 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.525 V. Piezo Error = -9.3 V.
17-03-18 04:48:44.944 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30423 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30424 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30418 (-134.9 uncal um), Max = 30430 (-135.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:48:44.944 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30423, posNoise = 7, negNoise = 5
17-03-18 04:48:44.944 -07 000000467 INF: Z Motor: After move to -0.135756, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:44.944 -07 000000467 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:48:44.944 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:44.994 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:48:44.994 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:44.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:44.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:44.994 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:44.994 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:44.994 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:44.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:44.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:44.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:45.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:48:45.004 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:45.014 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:48:45.014 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:48:45.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:45.054 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:45.354 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:45.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:45.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:45.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-18 04:48:45.394 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:45.394 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:45.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:48:45.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:48:45.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:45.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:45.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:48:45.494 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:45.494 -07 000000467 INF: Autofocus start
17-03-18 04:48:45.494 -07 000000467 INF: MeasureProfile start
17-03-18 04:48:45.494 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:45.504 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:45.504 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:45.504 -07 000000467 INF: MeasureProfile done
17-03-18 04:48:45.504 -07 000000467 INF: X=48  Z correction [um]=0.2069503
17-03-18 04:48:45.504 -07 000000467 INF: Autofocus finished
17-03-18 04:48:45.704 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:45.704 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:45.704 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.135767157999929. ----------
17-03-18 04:48:45.704 -07 000000610 INF: Cycle	129	Tile	13	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:45.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28214, sync = True, waitForSettling = True)
17-03-18 04:48:45.714 -07 000000610 INF: Z Motor: Moving to -0.129155 mm, started at -0.135767 mm, distance = 6.61 um
17-03-18 04:48:45.714 -07 000000610 INF: FPGA: Xmit ZDACW 28214\n [Z Motor]
17-03-18 04:48:45.714 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:48:45.724 -07 000000610 INF: FPGA: 'ZDACW 28214' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:45.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:45.724 -07 000000501 INF: FPGA: Recv ZDACR 28214
17-03-18 04:48:45.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:45.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.884 -07 000000626 INF: FPGA: Recv ZSGSRD 29397
17-03-18 04:48:45.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.894 -07 000000455 INF: FPGA: Recv ZSGSRD 29398
17-03-18 04:48:45.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.904 -07 000000479 INF: FPGA: Recv ZSGSRD 29399
17-03-18 04:48:45.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.914 -07 000000467 INF: FPGA: Recv ZSGSRD 29396
17-03-18 04:48:45.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29395
17-03-18 04:48:45.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.934 -07 000000424 INF: FPGA: Recv ZSGSRD 29394
17-03-18 04:48:45.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.944 -07 000000606 INF: FPGA: Recv ZSGSRD 29395
17-03-18 04:48:45.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29396
17-03-18 04:48:45.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29397
17-03-18 04:48:45.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:45.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29396
17-03-18 04:48:45.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:45.984 -07 000000608 INF: FPGA: Recv ZPIEZORD 24815
17-03-18 04:48:45.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:45.994 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.305 V. Piezo Error = -10.0 V.
17-03-18 04:48:45.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29396 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29396 (-128.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29394 (-128.4 uncal um), Max = 29399 (-128.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:48:45.994 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29396, posNoise = 3, negNoise = 2
17-03-18 04:48:45.994 -07 000000610 INF: Z Motor: After move to -0.129155, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:45.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:48:45.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:45.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:45.994 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:45.994 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:45.994 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:45.994 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:45.994 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:45.994 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:45.994 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:45.994 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:46.004 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-18 04:48:46.004 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:46.004 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:46.004 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:46.004 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:46.004 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:46.014 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:48:46.014 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:48:46.024 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:48:46.024 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:48:46.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28391 150\n [Camera]
17-03-18 04:48:46.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:46.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:46.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:46.654 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:46.654 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:46.654 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:48:46.654 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:46.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:46.654 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:46.654 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:46.654 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:48:46.704 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:46.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28391 811
17-03-18 04:48:46.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:47.044 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:48:47.044 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:48:47.044 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:47.044 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:48:47.044 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:48:47.044 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:47.044 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:47.044 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:48:47.044 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:47.054 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:48:47.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:47.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:47.194 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:47.194 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:47.194 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:47.204 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:48:47.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:47.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:47.204 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:47.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:48:47.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:48:47.384 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:47.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28391 150' command took 2 ms to send, 1358 ms to get response, and 1366 ms overall
17-03-18 04:48:47.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:47.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.12916949213034. ------
17-03-18 04:48:47.394 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:47.394 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13553 mm
17-03-18 04:48:47.394 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:47.394 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:48:47.394 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 04:48:47.394 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29606, sync = True, waitForSettling = False)
17-03-18 04:48:47.394 -07 000000480 INF: Z Motor: Moving to -0.135528 mm, started at -0.129169 mm, distance = -6.36 um
17-03-18 04:48:47.394 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:47.524 -07 000000480 INF: FPGA: Xmit ZDACW 29606\n [Z Motor]
17-03-18 04:48:47.524 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 04:48:47.524 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:48:47.534 -07 000000480 INF: FPGA: 'ZDACW 29606' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 04:48:47.534 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:47.534 -07 000000618 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:48:47.544 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 142 ms overall
17-03-18 04:48:47.544 -07 000000512 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:47.544 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:47.544 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:48:47.544 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:47.554 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:47.554 -07 000000618 INF: FPGA: Recv ZDACR 29606
17-03-18 04:48:47.564 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:47.564 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:47.564 -07 000000480 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 04:48:47.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:48:47.594 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:48:47.594 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:47.594 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:48:47.594 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:48:47.594 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:47.604 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:47.604 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:48:47.604 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:47.604 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:48:47.744 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:47.744 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 04:48:47.934 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:48:47.934 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:48:47.984 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:47.994 -07 000000447 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:48:47.994 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:48:47.994 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:47.994 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:48:47.994 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 04:48:48.944 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:48.944 -07 000000501 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:48:48.954 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:48.954 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:48.984 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:48.984 -07 000000512 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:48.984 -07 000000512 INF: Y Motor: Moved to 70.6875 after 1583 ms (table move)
17-03-18 04:48:48.984 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135528 mm (DAC = 29606)
17-03-18 04:48:48.984 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:48.984 -07 000000461 INF: FPGA: Recv ZSGSRD 30394
17-03-18 04:48:48.994 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:48.994 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:48.994 -07 000000502 INF: FPGA: Recv ZSGSRD 30386
17-03-18 04:48:49.004 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.004 -07 000000424 INF: FPGA: Recv ZSGSRD 30384
17-03-18 04:48:49.014 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.014 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:48:49.024 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.024 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.024 -07 000000479 INF: FPGA: Recv ZSGSRD 30383
17-03-18 04:48:49.034 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.034 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.034 -07 000000618 INF: FPGA: Recv ZSGSRD 30385
17-03-18 04:48:49.044 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.044 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.044 -07 000000606 INF: FPGA: Recv ZSGSRD 30384
17-03-18 04:48:49.054 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.054 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.054 -07 000000579 INF: FPGA: Recv ZSGSRD 30391
17-03-18 04:48:49.064 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.064 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.064 -07 000000467 INF: FPGA: Recv ZSGSRD 30393
17-03-18 04:48:49.074 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.074 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:49.074 -07 000000581 INF: FPGA: Recv ZSGSRD 30385
17-03-18 04:48:49.084 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.084 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:49.084 -07 000000480 INF: FPGA: Recv ZPIEZORD 26111
17-03-18 04:48:49.094 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.094 -07 000000608 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.4 V.
17-03-18 04:48:49.094 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30387 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30386 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30394 (-134.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:48:49.094 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30387, posNoise = 7, negNoise = 4
17-03-18 04:48:49.094 -07 000000608 INF: Z Motor: After move to -0.135528, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:49.094 -07 000000608 INF: Z Motor: Settle wait time = 1588 ms, measure time = 105 ms (allowed 150 ms), total time = 1693 ms
17-03-18 04:48:49.094 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:49.124 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.012614,
17-03-18 04:48:49.144 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms
17-03-18 04:48:49.144 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:49.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:49.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:49.144 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:49.144 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:49.144 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:49.144 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:49.144 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:49.144 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:49.154 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:49.154 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:49.164 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:48:49.164 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:48:49.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:49.214 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:49.514 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:49.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:49.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:49.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:49.554 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:49.554 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:49.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 04:48:49.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:48:49.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:49.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:49.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:49.654 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:49.654 -07 000000461 INF: Autofocus start
17-03-18 04:48:49.654 -07 000000461 INF: MeasureProfile start
17-03-18 04:48:49.654 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:49.664 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:49.664 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:49.664 -07 000000461 INF: MeasureProfile done
17-03-18 04:48:49.664 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:48:49.664 -07 000000461 INF: Autofocus finished
17-03-18 04:48:49.864 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:49.864 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:48:49.864 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135535886362825. ----------
17-03-18 04:48:49.874 -07 000000610 INF: Cycle	129	Tile	14	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:49.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28114, sync = True, waitForSettling = True)
17-03-18 04:48:49.874 -07 000000610 INF: Z Motor: Moving to -0.128698 mm, started at -0.135536 mm, distance = 6.84 um
17-03-18 04:48:49.874 -07 000000610 INF: FPGA: Xmit ZDACW 28114\n [Z Motor]
17-03-18 04:48:49.874 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:48:49.884 -07 000000610 INF: FPGA: 'ZDACW 28114' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:49.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:49.884 -07 000000474 INF: FPGA: Recv ZDACR 28114
17-03-18 04:48:49.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:49.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:50.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.044 -07 000000579 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:48:50.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.054 -07 000000447 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:48:50.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:48:50.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.074 -07 000000618 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:48:50.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.084 -07 000000581 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:48:50.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.094 -07 000000424 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:48:50.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.104 -07 000000382 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:48:50.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.114 -07 000000455 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:48:50.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:48:50.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:50.134 -07 000000581 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:48:50.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:50.144 -07 000000501 INF: FPGA: Recv ZPIEZORD 24724
17-03-18 04:48:50.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:50.154 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -10.1 V.
17-03-18 04:48:50.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29322 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29320 (-127.9 uncal um), Max = 29324 (-127.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:48:50.154 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29322, posNoise = 2, negNoise = 2
17-03-18 04:48:50.154 -07 000000610 INF: Z Motor: After move to -0.128698, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:50.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:48:50.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:50.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:50.154 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:50.154 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:50.154 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:50.154 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:50.154 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:50.154 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:50.154 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:50.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:50.154 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:48:50.154 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:50.164 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:50.164 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:50.164 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:50.164 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:50.174 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:48:50.174 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:50.174 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:48:50.174 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:50.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28291 150\n [Camera]
17-03-18 04:48:50.374 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:48:50.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:50.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:50.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:50.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:50.804 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:50.804 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:50.804 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:50.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:50.814 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:50.814 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:50.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28291 811
17-03-18 04:48:51.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:51.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:48:51.184 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:48:51.184 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:51.184 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:48:51.184 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:48:51.184 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:51.194 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:51.194 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:51.194 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:48:51.194 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:48:51.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:51.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:51.344 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:51.354 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:51.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:51.354 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:51.354 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:51.354 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:48:51.354 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:51.354 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:48:51.534 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:51.534 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:51.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28291 150' command took 2 ms to send, 1359 ms to get response, and 1365 ms overall
17-03-18 04:48:51.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:51.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.12869410043185. ------
17-03-18 04:48:51.544 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:51.664 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13539 mm
17-03-18 04:48:51.664 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:51.674 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:48:51.674 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29575, sync = True, waitForSettling = False)
17-03-18 04:48:51.674 -07 000000461 INF: Z Motor: Moving to -0.135386 mm, started at -0.128694 mm, distance = -6.69 um
17-03-18 04:48:51.674 -07 000000461 INF: FPGA: Xmit ZDACW 29575\n [Z Motor]
17-03-18 04:48:51.674 -07 000000579 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 04:48:51.674 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:51.674 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 122 ms to send, 3 ms to get response, and 128 ms overall
17-03-18 04:48:51.674 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:48:51.684 -07 000000461 INF: FPGA: 'ZDACW 29575' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:51.684 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:51.684 -07 000000447 INF: FPGA: Recv ZDACR 29575
17-03-18 04:48:51.694 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:51.694 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:51.694 -07 000000461 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 04:48:51.694 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:48:51.704 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:51.704 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:48:51.704 -07 000000579 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:51.704 -07 000000579 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:51.704 -07 000000579 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:48:51.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:51.714 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:51.754 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:48:51.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:48:51.754 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:48:51.754 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:51.754 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:48:51.754 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:51.754 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:51.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:51.754 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:48:51.764 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:48:51.904 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:51.904 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 229 ms overall
17-03-18 04:48:52.084 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:48:52.084 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:48:52.134 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:52.134 -07 000000480 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:48:52.144 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:48:52.144 -07 000000579 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:52.144 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:48:52.144 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 04:48:53.094 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:53.094 -07 000000502 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:48:53.104 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:53.104 -07 000000579 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:53.134 -07 000000579 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:53.134 -07 000000579 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:53.134 -07 000000579 INF: Y Motor: Moved to 71.5176 after 1461 ms (table move)
17-03-18 04:48:53.134 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135386 mm (DAC = 29575)
17-03-18 04:48:53.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.134 -07 000000501 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:48:53.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:53.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.144 -07 000000625 INF: FPGA: Recv ZSGSRD 30366
17-03-18 04:48:53.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.154 -07 000000606 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:48:53.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.164 -07 000000382 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:48:53.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.174 -07 000000579 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:48:53.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.184 -07 000000501 INF: FPGA: Recv ZSGSRD 30364
17-03-18 04:48:53.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.194 -07 000000461 INF: FPGA: Recv ZSGSRD 30358
17-03-18 04:48:53.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.204 -07 000000479 INF: FPGA: Recv ZSGSRD 30363
17-03-18 04:48:53.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.214 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.214 -07 000000467 INF: FPGA: Recv ZSGSRD 30369
17-03-18 04:48:53.224 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.224 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:53.224 -07 000000474 INF: FPGA: Recv ZSGSRD 30365
17-03-18 04:48:53.234 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.234 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:53.234 -07 000000455 INF: FPGA: Recv ZPIEZORD 26170
17-03-18 04:48:53.244 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:53.244 -07 000000618 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.2 V.
17-03-18 04:48:53.244 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30364 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30365 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30358 (-134.6 uncal um), Max = 30369 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:48:53.244 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30364, posNoise = 5, negNoise = 6
17-03-18 04:48:53.244 -07 000000618 INF: Z Motor: After move to -0.135386, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:53.244 -07 000000618 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:48:53.244 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:53.294 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:48:53.294 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:53.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:53.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:53.294 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:53.294 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:53.294 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:53.294 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:53.294 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:53.294 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:53.304 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:48:53.304 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:53.304 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:48:53.304 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:48:53.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:53.354 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:53.654 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:53.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:53.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:53.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:48:53.694 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:53.694 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:53.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:48:53.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:53.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:53.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:53.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:53.794 -07 000000625 INF: Autofocus start
17-03-18 04:48:53.794 -07 000000625 INF: MeasureProfile start
17-03-18 04:48:53.794 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:53.794 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:53.804 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:53.804 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:53.804 -07 000000625 INF: MeasureProfile done
17-03-18 04:48:53.804 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:48:53.804 -07 000000625 INF: Autofocus finished
17-03-18 04:48:54.004 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:54.004 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:48:54.004 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135388129483565. ----------
17-03-18 04:48:54.004 -07 000000610 INF: Cycle	129	Tile	15	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:54.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28100, sync = True, waitForSettling = True)
17-03-18 04:48:54.014 -07 000000610 INF: Z Motor: Moving to -0.128634 mm, started at -0.135388 mm, distance = 6.75 um
17-03-18 04:48:54.014 -07 000000610 INF: FPGA: Xmit ZDACW 28100\n [Z Motor]
17-03-18 04:48:54.014 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:48:54.024 -07 000000610 INF: FPGA: 'ZDACW 28100' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:54.024 -07 000000501 INF: FPGA: Recv ZDACR 28100
17-03-18 04:48:54.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:54.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.184 -07 000000424 INF: FPGA: Recv ZSGSRD 29313
17-03-18 04:48:54.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:54.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.204 -07 000000474 INF: FPGA: Recv ZSGSRD 29311
17-03-18 04:48:54.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:48:54.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.224 -07 000000569 INF: FPGA: Recv ZSGSRD 29312
17-03-18 04:48:54.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:48:54.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.254 -07 000000502 INF: FPGA: Recv ZSGSRD 29309
17-03-18 04:48:54.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:54.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29315
17-03-18 04:48:54.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.274 -07 000000447 INF: FPGA: Recv ZSGSRD 29310
17-03-18 04:48:54.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.284 -07 000000569 INF: FPGA: Recv ZSGSRD 29312
17-03-18 04:48:54.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.294 -07 000000474 INF: FPGA: Recv ZSGSRD 29312
17-03-18 04:48:54.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29316
17-03-18 04:48:54.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:54.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29319
17-03-18 04:48:54.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:54.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:54.324 -07 000000608 INF: FPGA: Recv ZPIEZORD 24768
17-03-18 04:48:54.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:54.334 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -10.0 V.
17-03-18 04:48:54.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29313 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29312 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29309 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:48:54.334 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29313, posNoise = 6, negNoise = 4
17-03-18 04:48:54.334 -07 000000610 INF: Z Motor: After move to -0.128634, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:54.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-18 04:48:54.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:54.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:54.334 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:54.334 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:54.334 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:54.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:54.334 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:54.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:54.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:54.344 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:54.344 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:48:54.344 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:54.344 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:54.344 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:48:54.344 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:54.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:54.354 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:48:54.354 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:48:54.354 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:48:54.354 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:48:54.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28276 150\n [Camera]
17-03-18 04:48:54.494 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.000345,
17-03-18 04:48:54.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:48:54.984 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:48:54.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:48:54.984 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:54.994 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:48:54.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:48:54.994 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:54.994 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:54.994 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:48:54.994 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:54.994 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:48:55.174 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28276 811
17-03-18 04:48:55.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:55.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:48:55.384 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:48:55.394 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:55.394 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:48:55.394 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:48:55.394 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:55.394 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:55.394 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:48:55.394 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:55.404 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:48:55.534 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:55.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:55.534 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:55.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:55.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:55.534 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:55.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:55.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:48:55.544 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:55.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:48:55.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:55.724 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:55.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28276 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-18 04:48:55.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:55.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128636282522574. ------
17-03-18 04:48:55.724 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:55.724 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13508 mm
17-03-18 04:48:55.724 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:55.734 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29508, sync = True, waitForSettling = False)
17-03-18 04:48:55.734 -07 000000502 INF: Z Motor: Moving to -0.135079 mm, started at -0.128636 mm, distance = -6.44 um
17-03-18 04:48:55.734 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:48:55.734 -07 000000501 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:48:55.734 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:55.734 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 04:48:55.734 -07 000000502 INF: FPGA: Xmit ZDACW 29508\n [Z Motor]
17-03-18 04:48:55.734 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:48:55.744 -07 000000502 INF: FPGA: 'ZDACW 29508' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:48:55.744 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:55.744 -07 000000479 INF: FPGA: Recv ZDACR 29508
17-03-18 04:48:55.754 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:55.754 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:55.754 -07 000000502 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 04:48:55.754 -07 000000455 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:48:55.764 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:55.764 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:48:55.764 -07 000000501 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:55.764 -07 000000501 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:55.764 -07 000000501 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:48:55.774 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:55.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:48:55.924 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:48:55.924 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:55.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:48:55.924 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:48:55.924 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:55.934 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:55.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:55.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:48:55.934 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:48:55.964 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:48:55.964 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 229 ms overall
17-03-18 04:48:56.144 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:48:56.144 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 384 ms overall
17-03-18 04:48:56.194 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:56.204 -07 000000625 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:48:56.204 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:48:56.204 -07 000000501 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:56.204 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:48:56.204 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 04:48:56.704 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:48:56.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:48:57.154 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:57.154 -07 000000512 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:48:57.164 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:57.164 -07 000000501 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:57.194 -07 000000501 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:48:57.194 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:48:57.194 -07 000000501 INF: Y Motor: Moved to 72.3481 after 1458 ms (table move)
17-03-18 04:48:57.194 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135079 mm (DAC = 29508)
17-03-18 04:48:57.194 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.194 -07 000000480 INF: FPGA: Recv ZSGSRD 30314
17-03-18 04:48:57.204 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:48:57.204 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.204 -07 000000447 INF: FPGA: Recv ZSGSRD 30312
17-03-18 04:48:57.214 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.214 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.214 -07 000000474 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:48:57.224 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.224 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.224 -07 000000502 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:48:57.234 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.234 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.234 -07 000000455 INF: FPGA: Recv ZSGSRD 30317
17-03-18 04:48:57.244 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.244 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.244 -07 000000626 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:48:57.254 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.254 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.254 -07 000000608 INF: FPGA: Recv ZSGSRD 30320
17-03-18 04:48:57.264 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.264 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.264 -07 000000581 INF: FPGA: Recv ZSGSRD 30321
17-03-18 04:48:57.274 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.274 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.274 -07 000000424 INF: FPGA: Recv ZSGSRD 30313
17-03-18 04:48:57.284 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.284 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:57.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30313
17-03-18 04:48:57.294 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.294 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:57.294 -07 000000626 INF: FPGA: Recv ZPIEZORD 26099
17-03-18 04:48:57.304 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:57.304 -07 000000579 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -9.3 V.
17-03-18 04:48:57.304 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30315 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30314 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30311 (-134.3 uncal um), Max = 30321 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:48:57.304 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30315, posNoise = 6, negNoise = 4
17-03-18 04:48:57.304 -07 000000579 INF: Z Motor: After move to -0.135079, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:57.304 -07 000000579 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:48:57.304 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:48:57.354 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:48:57.354 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:48:57.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:57.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:57.354 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:57.354 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:57.354 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:48:57.354 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:57.354 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:48:57.354 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:48:57.364 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:57.364 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:48:57.374 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:48:57.374 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:48:57.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:48:57.424 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:48:57.724 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:48:57.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:48:57.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:48:57.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 04:48:57.764 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:48:57.764 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:48:57.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:48:57.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:48:57.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:57.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:48:57.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:48:57.864 -07 000000424 INF: Autofocus start
17-03-18 04:48:57.864 -07 000000424 INF: MeasureProfile start
17-03-18 04:48:57.864 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:57.864 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:57.874 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:48:57.874 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:48:57.874 -07 000000424 INF: MeasureProfile done
17-03-18 04:48:57.874 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:48:57.874 -07 000000424 INF: Autofocus finished
17-03-18 04:48:58.074 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:48:58.074 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:48:58.074 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.135073343088618. ----------
17-03-18 04:48:58.084 -07 000000610 INF: Cycle	129	Tile	16	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:48:58.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28016, sync = True, waitForSettling = True)
17-03-18 04:48:58.084 -07 000000610 INF: Z Motor: Moving to -0.128249 mm, started at -0.135073 mm, distance = 6.82 um
17-03-18 04:48:58.084 -07 000000610 INF: FPGA: Xmit ZDACW 28016\n [Z Motor]
17-03-18 04:48:58.094 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:48:58.094 -07 000000610 INF: FPGA: 'ZDACW 28016' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:48:58.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:58.094 -07 000000479 INF: FPGA: Recv ZDACR 28016
17-03-18 04:48:58.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:48:58.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:48:58.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29250
17-03-18 04:48:58.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:48:58.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.264 -07 000000581 INF: FPGA: Recv ZSGSRD 29256
17-03-18 04:48:58.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.274 -07 000000626 INF: FPGA: Recv ZSGSRD 29254
17-03-18 04:48:58.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29252
17-03-18 04:48:58.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.294 -07 000000447 INF: FPGA: Recv ZSGSRD 29253
17-03-18 04:48:58.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.304 -07 000000455 INF: FPGA: Recv ZSGSRD 29256
17-03-18 04:48:58.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.314 -07 000000467 INF: FPGA: Recv ZSGSRD 29250
17-03-18 04:48:58.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.324 -07 000000626 INF: FPGA: Recv ZSGSRD 29250
17-03-18 04:48:58.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:48:58.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.334 -07 000000608 INF: FPGA: Recv ZSGSRD 29252
17-03-18 04:48:58.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:48:58.344 -07 000000447 INF: FPGA: Recv ZSGSRD 29251
17-03-18 04:48:58.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:48:58.354 -07 000000455 INF: FPGA: Recv ZPIEZORD 24710
17-03-18 04:48:58.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:48:58.364 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -10.0 V.
17-03-18 04:48:58.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29252 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29252 (-127.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29250 (-127.5 uncal um), Max = 29256 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:48:58.364 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29252, posNoise = 4, negNoise = 2
17-03-18 04:48:58.364 -07 000000610 INF: Z Motor: After move to -0.128249, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:48:58.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 04:48:58.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:48:58.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:48:58.364 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:48:58.364 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:48:58.364 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:48:58.364 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:48:58.364 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:48:58.364 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:48:58.364 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:48:58.364 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:48:58.374 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:48:58.374 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:48:58.374 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:48:58.374 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:48:58.374 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:48:58.374 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:48:58.384 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:48:58.384 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:48:58.384 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:48:58.384 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:48:58.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28192 150\n [Camera]
17-03-18 04:48:58.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 04:48:59.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:48:59.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:48:59.014 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:59.014 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:59.014 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:48:59.014 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:48:59.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:48:59.014 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:59.014 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:59.014 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:48:59.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28192 811
17-03-18 04:48:59.354 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:48:59.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:48:59.394 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:48:59.394 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:59.394 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:48:59.394 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:48:59.394 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:59.404 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:59.404 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:48:59.404 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:48:59.414 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:48:59.554 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:48:59.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:48:59.564 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:48:59.564 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:48:59.564 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:48:59.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:48:59.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:48:59.564 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:48:59.564 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:48:59.564 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:48:59.754 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:48:59.754 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:48:59.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28192 150' command took 2 ms to send, 1361 ms to get response, and 1366 ms overall
17-03-18 04:48:59.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:48:59.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.128244405581927. ------
17-03-18 04:48:59.754 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:48:59.754 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13480 mm
17-03-18 04:48:59.754 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:48:59.874 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:48:59.874 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-18 04:48:59.874 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29448, sync = True, waitForSettling = False)
17-03-18 04:48:59.874 -07 000000474 INF: Z Motor: Moving to -0.134804 mm, started at -0.128244 mm, distance = -6.56 um
17-03-18 04:48:59.874 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:48:59.874 -07 000000447 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:48:59.884 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:48:59.884 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.974486,
17-03-18 04:48:59.884 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-18 04:48:59.894 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:48:59.894 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:48:59.894 -07 000000447 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:48:59.894 -07 000000447 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:48:59.894 -07 000000447 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:48:59.904 -07 000000474 INF: FPGA: Xmit ZDACW 29448\n [Z Motor]
17-03-18 04:48:59.904 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:48:59.914 -07 000000474 INF: FPGA: 'ZDACW 29448' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 04:48:59.924 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:48:59.934 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:48:59.934 -07 000000501 INF: FPGA: Recv ZDACR 29448
17-03-18 04:48:59.944 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:48:59.944 -07 000000474 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-18 04:48:59.954 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:48:59.954 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:48:59.954 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:59.954 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:59.954 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:48:59.954 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:48:59.954 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:48:59.954 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:48:59.964 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:48:59.974 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:49:00.094 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:49:00.094 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 04:49:00.294 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:49:00.294 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 402 ms overall
17-03-18 04:49:00.344 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:00.344 -07 000000569 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:49:00.354 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:49:00.354 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:00.354 -07 000000447 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:49:00.354 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.844 mm, average velocity = 2.095 mm/sec
17-03-18 04:49:01.304 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:01.304 -07 000000382 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:49:01.314 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:01.314 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:01.344 -07 000000447 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:49:01.344 -07 000000447 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:49:01.344 -07 000000447 INF: Y Motor: Moved to 73.1748 after 1473 ms (table move)
17-03-18 04:49:01.354 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134804 mm (DAC = 29448)
17-03-18 04:49:01.354 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.354 -07 000000461 INF: FPGA: Recv ZSGSRD 30276
17-03-18 04:49:01.364 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:49:01.364 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.364 -07 000000608 INF: FPGA: Recv ZSGSRD 30273
17-03-18 04:49:01.374 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.374 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.374 -07 000000581 INF: FPGA: Recv ZSGSRD 30269
17-03-18 04:49:01.384 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.384 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30275
17-03-18 04:49:01.394 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.394 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.394 -07 000000447 INF: FPGA: Recv ZSGSRD 30277
17-03-18 04:49:01.404 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.404 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30278
17-03-18 04:49:01.414 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.414 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.414 -07 000000467 INF: FPGA: Recv ZSGSRD 30274
17-03-18 04:49:01.424 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.424 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.424 -07 000000581 INF: FPGA: Recv ZSGSRD 30270
17-03-18 04:49:01.434 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.434 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.434 -07 000000625 INF: FPGA: Recv ZSGSRD 30272
17-03-18 04:49:01.444 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.444 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:01.444 -07 000000447 INF: FPGA: Recv ZSGSRD 30268
17-03-18 04:49:01.454 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.454 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:49:01.454 -07 000000461 INF: FPGA: Recv ZPIEZORD 26029
17-03-18 04:49:01.464 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:01.464 -07 000000479 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -9.3 V.
17-03-18 04:49:01.464 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30273 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30274 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30268 (-134.0 uncal um), Max = 30278 (-134.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:49:01.464 -07 000000479 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30273, posNoise = 5, negNoise = 5
17-03-18 04:49:01.464 -07 000000479 INF: Z Motor: After move to -0.134804, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:49:01.464 -07 000000479 INF: Z Motor: Settle wait time = 1477 ms, measure time = 108 ms (allowed 150 ms), total time = 1585 ms
17-03-18 04:49:01.464 -07 000000479 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:49:01.514 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1753 ms
17-03-18 04:49:01.514 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:49:01.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:49:01.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:49:01.514 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:49:01.514 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:49:01.514 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:49:01.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:49:01.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:49:01.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:49:01.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:49:01.524 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:49:01.534 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:49:01.534 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:49:01.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:49:01.574 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:49:01.704 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:01.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:49:01.874 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:49:01.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:49:01.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:49:01.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:49:01.914 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:49:01.914 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:49:01.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:49:01.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:49:01.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:01.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:49:01.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:49:02.014 -07 000000581 INF: Autofocus start
17-03-18 04:49:02.014 -07 000000581 INF: MeasureProfile start
17-03-18 04:49:02.014 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:49:02.014 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:49:02.024 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:49:02.024 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:49:02.024 -07 000000581 INF: MeasureProfile done
17-03-18 04:49:02.024 -07 000000581 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:49:02.024 -07 000000581 INF: Autofocus finished
17-03-18 04:49:02.224 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:49:02.224 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:49:02.224 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134803526178664. ----------
17-03-18 04:49:02.224 -07 000000610 INF: Cycle	129	Tile	17	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:49:02.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27942, sync = True, waitForSettling = True)
17-03-18 04:49:02.234 -07 000000610 INF: Z Motor: Moving to -0.127910 mm, started at -0.134804 mm, distance = 6.89 um
17-03-18 04:49:02.234 -07 000000610 INF: FPGA: Xmit ZDACW 27942\n [Z Motor]
17-03-18 04:49:02.234 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:49:02.244 -07 000000610 INF: FPGA: 'ZDACW 27942' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:49:02.244 -07 000000480 INF: FPGA: Recv ZDACR 27942
17-03-18 04:49:02.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:49:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.404 -07 000000474 INF: FPGA: Recv ZSGSRD 29198
17-03-18 04:49:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:02.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.414 -07 000000618 INF: FPGA: Recv ZSGSRD 29203
17-03-18 04:49:02.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.424 -07 000000424 INF: FPGA: Recv ZSGSRD 29197
17-03-18 04:49:02.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.434 -07 000000461 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:49:02.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.444 -07 000000569 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:49:02.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:49:02.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.454 -07 000000480 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:49:02.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29203
17-03-18 04:49:02.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.474 -07 000000382 INF: FPGA: Recv ZSGSRD 29205
17-03-18 04:49:02.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.484 -07 000000626 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:49:02.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:02.494 -07 000000447 INF: FPGA: Recv ZSGSRD 29194
17-03-18 04:49:02.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:49:02.504 -07 000000479 INF: FPGA: Recv ZPIEZORD 24664
17-03-18 04:49:02.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:02.514 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.9 V.
17-03-18 04:49:02.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29201 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29202 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29194 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:49:02.514 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29201, posNoise = 6, negNoise = 7
17-03-18 04:49:02.514 -07 000000610 INF: Z Motor: After move to -0.127910, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:49:02.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:49:02.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:49:02.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:49:02.514 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:49:02.514 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:49:02.514 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:49:02.514 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:49:02.514 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:49:02.514 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:49:02.514 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:49:02.514 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:49:02.514 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:49:02.514 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:49:02.514 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:49:02.524 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:49:02.524 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:49:02.524 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:49:02.524 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:49:02.524 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:49:02.534 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:49:02.534 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:49:02.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28119 150\n [Camera]
17-03-18 04:49:02.734 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:49:03.154 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:49:03.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:49:03.164 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:49:03.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:49:03.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:49:03.164 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:49:03.164 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:49:03.164 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:49:03.164 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:49:03.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:49:03.354 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28119 811
17-03-18 04:49:03.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:49:03.554 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:49:03.554 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:49:03.554 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:03.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:49:03.554 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:49:03.554 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:03.564 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:03.564 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:03.564 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:49:03.564 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:49:03.704 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:49:03.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:49:03.704 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:49:03.714 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:49:03.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:49:03.714 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:49:03.714 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:49:03.714 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) start.
17-03-18 04:49:03.714 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:49:03.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:49:03.894 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:49:03.894 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:49:03.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28119 150' command took 2 ms to send, 1359 ms to get response, and 1366 ms overall
17-03-18 04:49:04.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:49:04.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.127916770762697. ------
17-03-18 04:49:04.024 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:49:04.024 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13384 mm
17-03-18 04:49:04.024 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:49:04.024 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:49:04.024 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:49:04.024 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:49:04.024 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29237, sync = True, waitForSettling = False)
17-03-18 04:49:04.024 -07 000000625 INF: Z Motor: Moving to -0.133838 mm, started at -0.127917 mm, distance = -5.92 um
17-03-18 04:49:04.034 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:04.034 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:04.034 -07 000000581 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:49:04.044 -07 000000625 INF: FPGA: Xmit ZDACW 29237\n [Z Motor]
17-03-18 04:49:04.044 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:49:04.044 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:04.044 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:49:04.044 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:49:04.044 -07 000000461 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:49:04.054 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:49:04.054 -07 000000625 INF: FPGA: 'ZDACW 29237' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:49:04.064 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:49:04.074 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:49:04.074 -07 000000474 INF: FPGA: Recv ZDACR 29237
17-03-18 04:49:04.084 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:49:04.084 -07 000000625 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 04:49:04.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2604943968, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:49:04.114 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:49:04.114 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:04.114 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:49:04.114 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:49:04.114 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:04.114 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:49:04.114 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:49:04.114 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:04.124 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:49:04.254 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:49:04.254 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:49:04.434 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:49:04.434 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:49:04.474 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:04.484 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:49:04.484 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:49:04.484 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:04.484 -07 000000461 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:49:04.484 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.848 mm, average velocity = 2.152 mm/sec
17-03-18 04:49:05.294 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 3.994908,
17-03-18 04:49:05.434 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:05.434 -07 000000424 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:49:05.444 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:05.444 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:05.464 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:49:05.464 -07 000000461 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:49:05.464 -07 000000461 INF: Y Motor: Moved to 74.0068 after 1440 ms (table move)
17-03-18 04:49:05.464 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133838 mm (DAC = 29237)
17-03-18 04:49:05.464 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.474 -07 000000467 INF: FPGA: Recv ZSGSRD 30125
17-03-18 04:49:05.474 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:49:05.474 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.474 -07 000000502 INF: FPGA: Recv ZSGSRD 30114
17-03-18 04:49:05.484 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.484 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.484 -07 000000455 INF: FPGA: Recv ZSGSRD 30124
17-03-18 04:49:05.494 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.494 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.494 -07 000000581 INF: FPGA: Recv ZSGSRD 30126
17-03-18 04:49:05.504 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.504 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.504 -07 000000608 INF: FPGA: Recv ZSGSRD 30130
17-03-18 04:49:05.514 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.514 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.514 -07 000000447 INF: FPGA: Recv ZSGSRD 30124
17-03-18 04:49:05.524 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.524 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.524 -07 000000480 INF: FPGA: Recv ZSGSRD 30115
17-03-18 04:49:05.534 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.534 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.534 -07 000000512 INF: FPGA: Recv ZSGSRD 30119
17-03-18 04:49:05.544 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.544 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.544 -07 000000581 INF: FPGA: Recv ZSGSRD 30121
17-03-18 04:49:05.554 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.554 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:05.554 -07 000000579 INF: FPGA: Recv ZSGSRD 30125
17-03-18 04:49:05.564 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:49:05.564 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:49:05.564 -07 000000608 INF: FPGA: Recv ZPIEZORD 25878
17-03-18 04:49:05.574 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:05.574 -07 000000569 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.461 V. Piezo Error = -9.3 V.
17-03-18 04:49:05.574 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30122 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30124 (-133.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30114 (-133.0 uncal um), Max = 30130 (-133.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:49:05.574 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30122, posNoise = 8, negNoise = 8
17-03-18 04:49:05.574 -07 000000569 INF: Z Motor: After move to -0.133838, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:49:05.574 -07 000000569 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-18 04:49:05.574 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:49:05.624 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 04:49:05.624 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:49:05.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:49:05.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:49:05.624 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:49:05.624 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:49:05.624 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:49:05.624 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:49:05.624 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:49:05.624 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:49:05.624 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:49:05.624 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:49:05.634 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:49:05.634 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:49:05.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:49:05.684 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:49:05.984 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:49:05.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:49:05.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:49:05.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:49:06.024 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:49:06.024 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:49:06.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:49:06.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:49:06.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:06.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:49:06.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:49:06.124 -07 000000479 INF: Autofocus start
17-03-18 04:49:06.124 -07 000000479 INF: MeasureProfile start
17-03-18 04:49:06.124 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:49:06.124 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:49:06.134 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:49:06.134 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:49:06.134 -07 000000479 INF: MeasureProfile done
17-03-18 04:49:06.134 -07 000000479 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 04:49:06.134 -07 000000479 INF: Autofocus finished
17-03-18 04:49:06.334 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:49:06.334 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 207 ms overall
17-03-18 04:49:06.344 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133833470145259. ----------
17-03-18 04:49:06.344 -07 000000610 INF: Cycle	129	Tile	18	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:49:06.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27715, sync = True, waitForSettling = True)
17-03-18 04:49:06.354 -07 000000610 INF: Z Motor: Moving to -0.126871 mm, started at -0.133833 mm, distance = 6.96 um
17-03-18 04:49:06.354 -07 000000610 INF: FPGA: Xmit ZDACW 27715\n [Z Motor]
17-03-18 04:49:06.354 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:49:06.364 -07 000000610 INF: FPGA: 'ZDACW 27715' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:49:06.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:49:06.364 -07 000000479 INF: FPGA: Recv ZDACR 27715
17-03-18 04:49:06.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:49:06.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.524 -07 000000382 INF: FPGA: Recv ZSGSRD 29034
17-03-18 04:49:06.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:06.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29041
17-03-18 04:49:06.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.544 -07 000000424 INF: FPGA: Recv ZSGSRD 29034
17-03-18 04:49:06.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.554 -07 000000512 INF: FPGA: Recv ZSGSRD 29039
17-03-18 04:49:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.564 -07 000000479 INF: FPGA: Recv ZSGSRD 29036
17-03-18 04:49:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.574 -07 000000382 INF: FPGA: Recv ZSGSRD 29037
17-03-18 04:49:06.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.584 -07 000000569 INF: FPGA: Recv ZSGSRD 29042
17-03-18 04:49:06.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.594 -07 000000606 INF: FPGA: Recv ZSGSRD 29039
17-03-18 04:49:06.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.604 -07 000000512 INF: FPGA: Recv ZSGSRD 29039
17-03-18 04:49:06.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:06.614 -07 000000626 INF: FPGA: Recv ZSGSRD 29043
17-03-18 04:49:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:49:06.624 -07 000000447 INF: FPGA: Recv ZPIEZORD 24464
17-03-18 04:49:06.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:06.634 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.229 V. Piezo Error = -10.0 V.
17-03-18 04:49:06.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29038 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29039 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29034 (-126.1 uncal um), Max = 29043 (-126.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:49:06.634 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29038, posNoise = 5, negNoise = 4
17-03-18 04:49:06.634 -07 000000610 INF: Z Motor: After move to -0.126871, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:49:06.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:49:06.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:49:06.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:49:06.634 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:49:06.634 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:49:06.634 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:49:06.634 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:49:06.634 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:49:06.634 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:49:06.634 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:49:06.634 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:49:06.634 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:49:06.634 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:49:06.644 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:49:06.644 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:49:06.644 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:49:06.644 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:49:06.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:49:06.654 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:49:06.654 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:49:06.654 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:49:06.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 27891 150\n [Camera]
17-03-18 04:49:06.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:06.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:49:06.854 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:49:07.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:49:07.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:49:07.284 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:49:07.294 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:49:07.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:49:07.294 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:49:07.294 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:49:07.294 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:49:07.294 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:49:07.294 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:49:07.474 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27891 812
17-03-18 04:49:07.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:49:07.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:49:07.684 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:49:07.684 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:07.684 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:49:07.684 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:49:07.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:49:07.684 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:49:07.684 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:07.684 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:49:07.694 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:49:07.834 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:49:07.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:49:07.834 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:49:07.834 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:49:07.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:49:07.834 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:49:07.844 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:49:07.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:49:07.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:49:07.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 04:49:08.024 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-18 04:49:08.024 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:49:08.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 27891 150' command took 2 ms to send, 1355 ms to get response, and 1366 ms overall
17-03-18 04:49:08.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:49:08.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.12686962418359. ------
17-03-18 04:49:08.034 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:49:08.034 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13330 mm
17-03-18 04:49:08.034 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:49:08.034 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:49:08.034 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:49:08.034 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29118, sync = True, waitForSettling = False)
17-03-18 04:49:08.034 -07 000000626 INF: Z Motor: Moving to -0.133294 mm, started at -0.126870 mm, distance = -6.42 um
17-03-18 04:49:08.034 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 04:49:08.044 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:08.044 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:08.044 -07 000000474 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:49:08.054 -07 000000626 INF: FPGA: Xmit ZDACW 29118\n [Z Motor]
17-03-18 04:49:08.054 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:49:08.054 -07 000000502 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:08.054 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:49:08.054 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:49:08.054 -07 000000502 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:49:08.064 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:49:08.064 -07 000000626 INF: FPGA: 'ZDACW 29118' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:49:08.074 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:49:08.084 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:49:08.084 -07 000000424 INF: FPGA: Recv ZDACR 29118
17-03-18 04:49:08.094 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:49:08.094 -07 000000626 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 04:49:08.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:49:08.244 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:49:08.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:08.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:49:08.244 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:49:08.244 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:08.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:08.244 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:08.244 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:49:08.254 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:49:08.264 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:49:08.264 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:49:08.444 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:49:08.444 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:49:08.474 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:08.484 -07 000000480 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:49:08.484 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:49:08.484 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:08.484 -07 000000502 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:49:08.484 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.158 mm/sec
17-03-18 04:49:09.434 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:09.434 -07 000000461 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:49:09.444 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:09.444 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:09.454 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:49:09.454 -07 000000502 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:49:09.454 -07 000000502 INF: Y Motor: Moved to 74.8306 after 1426 ms (table move)
17-03-18 04:49:09.464 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133294 mm (DAC = 29118)
17-03-18 04:49:09.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.464 -07 000000461 INF: FPGA: Recv ZSGSRD 30046
17-03-18 04:49:09.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:49:09.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.474 -07 000000382 INF: FPGA: Recv ZSGSRD 30034
17-03-18 04:49:09.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30033
17-03-18 04:49:09.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.494 -07 000000625 INF: FPGA: Recv ZSGSRD 30035
17-03-18 04:49:09.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.504 -07 000000501 INF: FPGA: Recv ZSGSRD 30043
17-03-18 04:49:09.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.514 -07 000000579 INF: FPGA: Recv ZSGSRD 30042
17-03-18 04:49:09.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.524 -07 000000480 INF: FPGA: Recv ZSGSRD 30042
17-03-18 04:49:09.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.534 -07 000000569 INF: FPGA: Recv ZSGSRD 30038
17-03-18 04:49:09.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.544 -07 000000625 INF: FPGA: Recv ZSGSRD 30036
17-03-18 04:49:09.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:09.554 -07 000000455 INF: FPGA: Recv ZSGSRD 30038
17-03-18 04:49:09.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:09.564 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:49:09.564 -07 000000467 INF: FPGA: Recv ZPIEZORD 25780
17-03-18 04:49:09.574 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:49:09.574 -07 000000608 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.4 V.
17-03-18 04:49:09.574 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30039 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30038 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30033 (-132.5 uncal um), Max = 30046 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:49:09.574 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30039, posNoise = 7, negNoise = 6
17-03-18 04:49:09.574 -07 000000608 INF: Z Motor: After move to -0.133294, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:49:09.574 -07 000000608 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-18 04:49:09.574 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:49:09.624 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 04:49:09.624 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:49:09.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:49:09.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:49:09.624 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:49:09.624 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:49:09.624 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:49:09.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:49:09.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:49:09.624 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:49:09.634 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:49:09.634 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:49:09.644 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:49:09.644 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:49:09.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:49:09.694 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:49:09.994 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:49:09.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:49:09.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:49:09.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 04:49:10.034 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:49:10.034 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:49:10.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:49:10.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:49:10.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:10.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:49:10.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:49:10.134 -07 000000626 INF: Autofocus start
17-03-18 04:49:10.134 -07 000000626 INF: MeasureProfile start
17-03-18 04:49:10.134 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:49:10.134 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:49:10.144 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:49:10.144 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:49:10.144 -07 000000626 INF: MeasureProfile done
17-03-18 04:49:10.144 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:49:10.144 -07 000000626 INF: Autofocus finished
17-03-18 04:49:10.344 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:49:10.344 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:49:10.344 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133300260537492. ----------
17-03-18 04:49:10.354 -07 000000610 INF: Cycle	129	Tile	19	Exposure Settings		A	426	G	205	T	205	C	426
17-03-18 04:49:10.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27626, sync = True, waitForSettling = True)
17-03-18 04:49:10.354 -07 000000610 INF: Z Motor: Moving to -0.126464 mm, started at -0.133300 mm, distance = 6.84 um
17-03-18 04:49:10.354 -07 000000610 INF: FPGA: Xmit ZDACW 27626\n [Z Motor]
17-03-18 04:49:10.354 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:49:10.364 -07 000000610 INF: FPGA: 'ZDACW 27626' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:49:10.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:49:10.364 -07 000000606 INF: FPGA: Recv ZDACR 27626
17-03-18 04:49:10.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:49:10.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.524 -07 000000626 INF: FPGA: Recv ZSGSRD 28973
17-03-18 04:49:10.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:10.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.534 -07 000000467 INF: FPGA: Recv ZSGSRD 28975
17-03-18 04:49:10.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.544 -07 000000501 INF: FPGA: Recv ZSGSRD 28978
17-03-18 04:49:10.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.554 -07 000000625 INF: FPGA: Recv ZSGSRD 28976
17-03-18 04:49:10.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.564 -07 000000382 INF: FPGA: Recv ZSGSRD 28980
17-03-18 04:49:10.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.574 -07 000000502 INF: FPGA: Recv ZSGSRD 28977
17-03-18 04:49:10.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.584 -07 000000579 INF: FPGA: Recv ZSGSRD 28978
17-03-18 04:49:10.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.594 -07 000000618 INF: FPGA: Recv ZSGSRD 28976
17-03-18 04:49:10.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.604 -07 000000581 INF: FPGA: Recv ZSGSRD 28974
17-03-18 04:49:10.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:49:10.614 -07 000000461 INF: FPGA: Recv ZSGSRD 28976
17-03-18 04:49:10.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:49:10.624 -07 000000480 INF: FPGA: Recv ZPIEZORD 24371
17-03-18 04:49:10.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:10.634 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.215 V. Piezo Error = -10.1 V.
17-03-18 04:49:10.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28976 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28976 (-125.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 28973 (-125.7 uncal um), Max = 28980 (-125.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:49:10.634 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28976, posNoise = 4, negNoise = 3
17-03-18 04:49:10.634 -07 000000610 INF: Z Motor: After move to -0.126464, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:49:10.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:49:10.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:49:10.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:49:10.634 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:49:10.634 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:49:10.634 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:49:10.634 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:49:10.634 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:49:10.634 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:49:10.634 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:49:10.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:49:10.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:49:10.634 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:49:10.644 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:49:10.644 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:49:10.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:49:10.644 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:49:10.654 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.008536,
17-03-18 04:49:10.654 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:49:10.654 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:49:10.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:49:10.654 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:49:10.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 27803 150\n [Camera]
17-03-18 04:49:10.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:49:11.284 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-18 04:49:11.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-18 04:49:11.294 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:49:11.294 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:49:11.294 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:49:11.294 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-18 04:49:11.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-18 04:49:11.294 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:49:11.294 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:49:11.294 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 04:49:11.484 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27803 814
17-03-18 04:49:11.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-18 04:49:11.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:49:11.674 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:49:11.674 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:11.674 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:49:11.674 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:49:11.674 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:11.674 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:49:11.674 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:49:11.674 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:49:11.684 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:49:11.704 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:11.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 128. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:49:11.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-18 04:49:11.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-18 04:49:11.834 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:49:11.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-18 04:49:11.834 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:49:11.834 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:49:11.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-18 04:49:11.834 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:49:11.834 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:49:11.834 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:49:12.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-18 04:49:12.024 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:49:12.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 27803 150' command took 2 ms to send, 1355 ms to get response, and 1370 ms overall
17-03-18 04:49:12.224 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:49:12.224 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:49:12.224 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:12.224 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:49:12.224 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:49:12.224 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:49:12.234 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:12.234 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:49:12.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:49:12.234 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:49:12.244 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:49:12.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 04:49:12.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:49:12.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:49:12.444 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-18 04:49:12.444 -07 000000610 INF: Imaging Cycle 129: ScanTilesCommand Cycle 129 time end. Duration was 157195 ms.
17-03-18 04:49:12.444 -07 000000610 INF: =================== Cycle #129 ===================
17-03-18 04:49:12.444 -07 000000610 INF: ===================  ===================
17-03-18 04:49:12.444 -07 000000455 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:49:12.444 -07 000000626 INF: FPGA: Recv EXLED1ADCR 22
17-03-18 04:49:12.454 -07 000000455 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:49:12.454 -07 000000455 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-18 04:49:12.454 -07 000000455 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 129, FrontChillerTemperature: 4.008536, FrontChillerHeatSinkTemperature: 0.564799, AmbientTemperature: 18.65776, FlowCellCompartmentTemperature: 21.98528, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.44364, GreenLEDSensorTemperature: 26.94031, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-18 04:49:12.554 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.