17-03-17 18:19:10.138 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:10.148 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:19:10.148 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 18:19:10.148 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:19:10.148 -07 000000569 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:19:10.158 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:19:10.158 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:19:10.158 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:19:10.158 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:19:10.158 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:19:10.268 -07 000000448 INF: FPGA: Recv YMVTO 154377 873
17-03-17 18:19:10.268 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-17 18:19:10.268 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:19:10.268 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 873 steps (0.546 mm). Slippage = -0.002 mm (0.00%).
17-03-17 18:19:10.268 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 18:19:10.738 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.005817,
17-03-17 18:19:11.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:19:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:19:13.268 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:19:13.268 -07 000000429 INF: FPGA: Recv YRDPOS 154383
17-03-17 18:19:13.278 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:19:13.278 -07 000000610 INF: Y Motor: Encoder = 154383 = motor step 120611.7 = 75.3823 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:19:13.288 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.001744, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:19:13.288 -07 000000610 INF: Y Motor: Position error after settling = 4 encoder counts (0.002 mm), Delta during settling = 6 counts (0.003 mm)
17-03-17 18:19:13.288 -07 000000610 INF: Y Motor: Moved to 75.3823 after 3144 ms
17-03-17 18:19:13.298 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 60° ===================
17-03-17 18:19:13.298 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:19:13.298 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:19:13.298 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:19:13.308 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:19:13.308 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:19:13.308 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 18:19:13.318 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:13.318 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 60° ===================
17-03-17 18:19:13.318 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:13.318 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:19:13.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:13.348 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:19:13.348 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:19:13.348 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:19:13.648 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:19:13.668 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:19:13.668 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:19:13.718 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:13.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:19:13.738 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:19:13.838 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:13.838 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:19:13.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:13.868 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:19:13.868 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:19:13.868 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:19:13.998 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:19:14.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:16.098 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.001704,
17-03-17 18:19:16.578 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 18:19:16.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=95, R2=103, Total=198. Warn if over 250 bubbles per interval.
17-03-17 18:19:17.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:17.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:17.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:17.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:18.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:18.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:18.098 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:19:18.098 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:18.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:18.258 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:19:18.258 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:19:18.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:18.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:19:18.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:19:18.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:19:18.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:19:18.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:19.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:19.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:19.038 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:19:19.038 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:20.258 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:19:20.258 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:19:20.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:20.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:19:20.278 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:19:20.278 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:19:20.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:19:20.428 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:19:20.428 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:19:20.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:20.498 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:19:20.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:19:20.598 -07 000000610 INF: =================== Cycle #12, Pumping Reagent CMS (4) ===================
17-03-17 18:19:20.598 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:19:20.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:20.628 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:19:20.628 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:19:20.628 -07 000000610 INF: =================== Cycle #12, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:19:20.758 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:19:20.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:21.458 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.969015,
17-03-17 18:19:21.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 6
17-03-17 18:19:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=6, R2=6, Total=12. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=101, R2=109, Total=210. Warn if over 250 bubbles per interval.
17-03-17 18:19:22.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:22.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:22.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:22.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:22.718 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:19:22.718 -07 000000610 INF: =================== Cycle #12, Pumping Reagent CMS (4) ===================
17-03-17 18:19:22.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:22.878 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:19:22.878 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:19:23.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:23.038 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:19:23.038 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:19:23.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:19:23.168 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:19:23.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:23.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:23.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:23.658 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:19:23.658 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:24.878 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:19:24.878 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:19:24.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:24.898 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:19:24.898 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:19:24.898 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:19:25.048 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:19:25.068 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:19:25.068 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:19:25.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:25.138 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:19:25.138 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:19:25.238 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:25.238 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:19:25.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:25.268 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:19:25.268 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:19:25.268 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:19:25.398 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:19:25.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:26.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:26.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:26.338 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:19:26.338 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:26.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:26.498 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:19:26.498 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:19:26.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 7
17-03-17 18:19:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=7, R2=6, Total=13. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=108, R2=115, Total=223. Warn if over 250 bubbles per interval.
17-03-17 18:19:26.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:26.658 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:19:26.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:19:26.658 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:19:26.788 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:19:26.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:26.818 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.962185,
17-03-17 18:19:27.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:27.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:27.278 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:19:27.278 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:27.278 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:19:27.278 -07 000000478 INF: WaitCommand(10000) start
17-03-17 18:19:27.278 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:19:28.498 -07 000000512 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:19:28.498 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-17 18:19:28.528 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:19:28.528 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:19:28.658 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:19:28.698 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:30.228 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:30.258 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:30.678 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:30.708 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:30.708 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:19:30.708 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:19:30.708 -07 000000512 INF: ===================  ===================
17-03-17 18:19:31.578 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:19:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=108, R2=115, Total=223. Warn if over 250 bubbles per interval.
17-03-17 18:19:32.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.959467,
17-03-17 18:19:36.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:19:36.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=109, R2=115, Total=224. Warn if over 250 bubbles per interval.
17-03-17 18:19:37.288 -07 000000478 INF: WaitCommand(10000) end
17-03-17 18:19:37.288 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:37.288 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:19:37.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:37.328 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:19:37.328 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:19:37.328 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:19:37.458 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:19:37.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:37.538 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.000345,
17-03-17 18:19:41.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:19:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=109, R2=116, Total=225. Warn if over 250 bubbles per interval.
17-03-17 18:19:42.898 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.001704,
17-03-17 18:19:43.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:43.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:44.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:44.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:44.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:44.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:44.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:45.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:45.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:45.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:45.458 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:19:45.458 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:45.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:45.618 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:19:45.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:19:45.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:45.778 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:19:45.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:19:45.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:19:45.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:19:45.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:46.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:46.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:46.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:19:46.398 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:46.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:19:46.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=109, R2=116, Total=225. Warn if over 250 bubbles per interval.
17-03-17 18:19:47.618 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:19:47.618 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:19:47.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:47.638 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:19:47.638 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:19:47.638 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:19:47.848 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:19:47.868 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:19:47.868 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:19:47.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:47.938 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:19:47.938 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:19:48.038 -07 000000610 INF: =================== Cycle #12, Pumping Reagent IMT (1) ===================
17-03-17 18:19:48.038 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:19:48.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:48.068 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:19:48.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:19:48.068 -07 000000610 INF: =================== Cycle #12, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:19:48.198 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:19:48.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:48.258 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.988112,
17-03-17 18:19:49.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:49.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:50.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:50.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:50.158 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:19:50.158 -07 000000610 INF: =================== Cycle #12, Pumping Reagent IMT (1) ===================
17-03-17 18:19:50.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:50.318 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:19:50.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:19:50.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:50.478 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:19:50.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:19:50.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:19:50.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:19:50.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:51.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:51.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:51.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:19:51.098 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:51.578 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 18:19:51.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=117, Total=228. Warn if over 250 bubbles per interval.
17-03-17 18:19:52.318 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:19:52.318 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:19:52.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:52.338 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:19:52.338 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:19:52.338 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:19:52.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:19:52.588 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:19:52.588 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:19:52.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:19:52.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:19:52.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:19:52.758 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:52.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:19:52.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:52.788 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:19:52.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:19:52.788 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:19:52.918 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:19:52.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:19:53.618 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.027603,
17-03-17 18:19:53.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:53.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:53.858 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:19:53.858 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:19:53.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:54.018 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:19:54.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:19:54.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:19:54.178 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:19:54.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:19:54.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:19:54.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:19:54.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:54.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:19:54.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:19:54.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:19:54.798 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:54.798 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 65° ===================
17-03-17 18:19:54.798 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:19:54.798 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:19:54.798 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:19:54.808 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:19:54.808 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:19:54.808 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 18:19:54.818 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:54.818 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 65° ===================
17-03-17 18:19:54.818 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:19:54.818 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:19:56.578 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:19:56.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:19:58.978 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.009895,
17-03-17 18:20:01.578 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:01.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:04.338 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.012614,
17-03-17 18:20:06.578 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:06.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:09.698 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.023489,
17-03-17 18:20:11.578 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:15.058 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.028963,
17-03-17 18:20:16.578 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:16.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:20.418 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.012614,
17-03-17 18:20:21.578 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:24.828 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:20:24.828 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:20:24.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:20:24.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:20:24.958 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:20:24.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:20:24.958 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:20:25.088 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:20:25.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:20:25.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:20:25.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:20:25.698 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 18:20:25.698 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:20:25.778 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.004458,
17-03-17 18:20:25.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:20:25.858 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:20:25.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:20:25.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:20:26.018 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:20:26.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:20:26.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:20:26.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:20:26.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:20:26.578 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:26.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:20:26.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:20:26.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:20:26.638 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:20:26.638 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:20:26.638 -07 000000547 INF: WaitCommand(30000) start
17-03-17 18:20:26.638 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:20:27.858 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:20:27.858 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-17 18:20:27.888 -07 000000569 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:20:27.888 -07 000000569 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:20:28.018 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:20:28.058 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:20:30.398 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 18:20:30.428 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:20:30.848 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 18:20:30.878 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:20:30.878 -07 000000569 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 18:20:30.878 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:20:30.878 -07 000000569 INF: ===================  ===================
17-03-17 18:20:31.138 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.007176,
17-03-17 18:20:31.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:36.498 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.994908,
17-03-17 18:20:36.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:36.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:41.578 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:41.858 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.99219,
17-03-17 18:20:46.578 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:47.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.018051,
17-03-17 18:20:51.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:51.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:52.578 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.978563,
17-03-17 18:20:56.578 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:20:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:20:56.648 -07 000000547 INF: WaitCommand(30000) end
17-03-17 18:20:56.648 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 22° ===================
17-03-17 18:20:56.648 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:20:56.648 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:20:56.648 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:20:56.658 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:20:56.658 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:20:56.658 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 18:20:56.668 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:20:56.668 -07 000000610 INF: =================== Cycle #12, Flow Cell Temp 22° ===================
17-03-17 18:20:56.668 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:20:56.668 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:20:56.668 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:20:56.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:20:56.708 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:20:56.708 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:20:56.708 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:20:56.838 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:20:56.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:20:57.938 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.979922,
17-03-17 18:21:00.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:00.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:00.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:01.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:01.578 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:01.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:01.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:01.618 -07 000000610 INF: LanePump: Waited 4739 ms for pump motion to complete
17-03-17 18:21:01.618 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:21:01.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:01.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:21:01.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:21:01.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:01.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:21:01.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:21:01.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:21:02.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:21:02.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:02.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:02.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:02.558 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:21:02.558 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:21:03.298 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.007176,
17-03-17 18:21:03.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:21:03.778 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:21:03.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:21:03.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:21:03.798 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:21:03.798 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:21:03.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:21:03.968 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:21:03.968 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:21:04.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:21:04.038 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:21:04.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:21:04.138 -07 000000610 INF: =================== Cycle #12, Pumping Reagent USM (2) ===================
17-03-17 18:21:04.138 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:21:04.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:04.168 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:21:04.168 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:21:04.168 -07 000000610 INF: =================== Cycle #12, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:21:04.298 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:21:04.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:05.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:05.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:06.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:06.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:06.258 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:21:06.258 -07 000000610 INF: =================== Cycle #12, Pumping Reagent USM (2) ===================
17-03-17 18:21:06.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:06.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:21:06.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:21:06.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:06.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:21:06.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:21:06.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:21:06.578 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:06.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:06.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:21:06.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:07.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:07.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:07.198 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:21:07.198 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:21:08.418 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:21:08.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:21:08.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:21:08.438 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:21:08.438 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:21:08.438 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:21:08.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:21:08.608 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:21:08.608 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:21:08.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:21:08.658 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.011254,
17-03-17 18:21:08.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:21:08.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:21:08.778 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:21:08.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:21:08.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:09.828 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:21:09.828 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:21:09.828 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:21:09.958 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:21:09.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:10.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:10.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:10.898 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:21:10.898 -07 000000610 INF: =================== Cycle #12, Pumping Reagent PR2 (3) ===================
17-03-17 18:21:11.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:11.058 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:21:11.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:21:11.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:21:11.218 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:21:11.218 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:21:11.218 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:21:11.348 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:21:11.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:11.588 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:11.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:11.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:11.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:11.838 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:21:11.838 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:21:11.838 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:21:11.838 -07 000000512 INF: WaitCommand(10000) start
17-03-17 18:21:11.838 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:21:13.058 -07 000000547 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:21:13.058 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 18:21:13.088 -07 000000547 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:21:13.088 -07 000000547 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:21:13.218 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:21:13.258 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:14.018 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.014009,
17-03-17 18:21:14.788 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:14.818 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:21:15.238 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 18:21:15.268 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:21:15.268 -07 000000547 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 18:21:15.268 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:21:15.268 -07 000000547 INF: ===================  ===================
17-03-17 18:21:16.588 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:16.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:19.378 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.008536,
17-03-17 18:21:21.588 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:21.848 -07 000000512 INF: WaitCommand(10000) end
17-03-17 18:21:21.858 -07 000000610 INF: =================== Cycle #12, Imaging ===================
17-03-17 18:21:21.858 -07 000000610 INF: Imaging Cycle 12: ScanTilesCommand Cycle 12 time start.
17-03-17 18:21:21.858 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:21:21.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:21:21.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:21:21.878 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:21:21.878 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:21:22.178 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:21:22.198 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:21:22.198 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:21:22.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:21:22.268 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:21:22.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:22.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:22.268 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:21:22.268 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:22.268 -07 000000382 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:21:22.278 -07 000000547 INF: FPGA: Recv EXLED1ON 
17-03-17 18:21:22.278 -07 000000382 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:22.278 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:21:22.278 -07 000000475 INF: FPGA: Recv EXLED1ADCR 23164
17-03-17 18:21:22.288 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:22.288 -07 000000382 INF: RedLED: Using Red data: Photodiode ADC 23164 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 18:21:22.288 -07 000000382 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:21:22.288 -07 000000448 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:21:22.298 -07 000000382 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:22.298 -07 000000382 INF: RedLED: LED was on for 19 ms
17-03-17 18:21:22.298 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 30 ms.
17-03-17 18:21:22.298 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:21:22.298 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:22.298 -07 000000382 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:21:22.308 -07 000000475 INF: FPGA: Recv EXLED2ON 
17-03-17 18:21:22.308 -07 000000382 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:21:22.308 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:21:22.308 -07 000000429 INF: FPGA: Recv EXLED1ADCR 2113
17-03-17 18:21:22.318 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:21:22.318 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 2113 --> 0.9 mW (old method), or 183.5 mW (new method). Difference = 182.6 mW
17-03-17 18:21:22.318 -07 000000382 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:21:22.318 -07 000000448 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:21:22.328 -07 000000382 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:22.328 -07 000000382 INF: GreenLED: LED was on for 18 ms
17-03-17 18:21:22.328 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 29 ms.
17-03-17 18:21:22.338 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:21:22.338 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 18:21:22.348 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:21:22.348 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:21:22.848 -07 000000478 INF: FPGA: Recv EMOUT
17-03-17 18:21:22.848 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:21:22.848 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:21:22.848 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 18:21:22.858 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:22.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:21:22.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38232421875, Z-Position -0.127222955851387. ------
17-03-17 18:21:22.858 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:21:22.858 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17927 mm
17-03-17 18:21:22.858 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:22.858 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:21:22.858 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:21:22.858 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 75.3823 mm, delta = -15.4697 mm
17-03-17 18:21:22.858 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 39160, sync = True, waitForSettling = False)
17-03-17 18:21:22.858 -07 000000448 INF: Z Motor: Moving to -0.179263 mm, started at -0.127223 mm, distance = -52.04 um
17-03-17 18:21:22.868 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:22.868 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:21:22.878 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:22.878 -07 000000382 INF: FPGA: Recv YRDPOS 154383
17-03-17 18:21:22.888 -07 000000448 INF: FPGA: Xmit ZDACW 39160\n [Z Motor]
17-03-17 18:21:22.888 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:21:22.888 -07 000000547 INF: Y Motor: Encoder = 154383 = motor step 120611.7 = 75.3823 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:22.888 -07 000000547 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:21:22.888 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:21:22.888 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:21:22.898 -07 000000448 INF: FPGA: 'ZDACW 39160' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:21:22.898 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:22.898 -07 000000478 INF: FPGA: Recv ZDACR 39160
17-03-17 18:21:22.908 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:21:22.908 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:22.908 -07 000000448 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:21:23.068 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:21:23.068 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 18:21:24.588 -07 000000569 INF: FPGA: Recv YMVTO 122703 24778
17-03-17 18:21:24.588 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 18:21:24.588 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:21:24.588 -07 000000547 INF: Y Motor: To move from 75.382 to 59.913 (-15.470 mm) should take 24752 steps, but required 24778 steps (15.486 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:21:24.588 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.470 mm, average velocity = 9.073 mm/sec
17-03-17 18:21:24.738 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.012614,
17-03-17 18:21:26.588 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:26.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:27.438 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:27.438 -07 000000475 INF: FPGA: Recv YRDPOS 122698
17-03-17 18:21:27.448 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:27.448 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:27.468 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:27.468 -07 000000547 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 18:21:27.468 -07 000000547 INF: Y Motor: Moved to 59.9111 after 4603 ms
17-03-17 18:21:27.468 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179263 mm (DAC = 39160)
17-03-17 18:21:27.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.468 -07 000000448 INF: FPGA: Recv ZSGSRD 37200
17-03-17 18:21:27.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:27.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.478 -07 000000547 INF: FPGA: Recv ZSGSRD 37190
17-03-17 18:21:27.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.488 -07 000000475 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:21:27.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.498 -07 000000569 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:21:27.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.508 -07 000000475 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:21:27.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.518 -07 000000448 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:21:27.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.528 -07 000000569 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:21:27.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.538 -07 000000475 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:21:27.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.548 -07 000000475 INF: FPGA: Recv ZSGSRD 37189
17-03-17 18:21:27.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:27.558 -07 000000448 INF: FPGA: Recv ZSGSRD 37190
17-03-17 18:21:27.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.568 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:27.568 -07 000000475 INF: FPGA: Recv ZPIEZORD 33483
17-03-17 18:21:27.578 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:27.578 -07 000000512 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.975 V. Piezo Error = -8.2 V.
17-03-17 18:21:27.578 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37194 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37193 (-178.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37189 (-178.3 uncal um), Max = 37200 (-178.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:21:27.578 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37194, posNoise = 6, negNoise = 5
17-03-17 18:21:27.578 -07 000000512 INF: Z Motor: After move to -0.179263, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:27.578 -07 000000512 INF: Z Motor: Settle wait time = 4605 ms, measure time = 106 ms (allowed 150 ms), total time = 4711 ms
17-03-17 18:21:27.578 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:27.628 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 18:21:27.628 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:27.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:27.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:27.628 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:27.628 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:27.628 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:21:27.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:27.638 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:27.638 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:21:27.658 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 18:21:27.658 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:21:27.658 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:21:27.658 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:21:27.668 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:21:27.668 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 37 ms.
17-03-17 18:21:27.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:21:27.718 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:21:27.918 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:21:27.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:21:27.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:21:27.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:21:27.958 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:21:27.958 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:21:27.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 286 ms overall
17-03-17 18:21:28.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:21:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:21:28.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:21:28.058 -07 000000475 INF: Image SNR check: start
17-03-17 18:21:28.058 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:21:28.058 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:21:28.068 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:28.068 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:21:28.068 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=78.38]
17-03-17 18:21:28.068 -07 000000475 INF: Autofocus start
17-03-17 18:21:28.068 -07 000000475 INF: MeasureProfile start
17-03-17 18:21:28.078 -07 000000475 INF: MeasureProfile done
17-03-17 18:21:28.078 -07 000000475 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:21:28.078 -07 000000475 INF: Autofocus finished
17-03-17 18:21:28.268 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:21:28.268 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:21:28.268 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179265498411792. ----------
17-03-17 18:21:28.268 -07 000000610 INF: Cycle	12	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:28.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37640, sync = True, waitForSettling = True)
17-03-17 18:21:28.278 -07 000000610 INF: Z Motor: Moving to -0.172305 mm, started at -0.179265 mm, distance = 6.96 um
17-03-17 18:21:28.278 -07 000000610 INF: FPGA: Xmit ZDACW 37640\n [Z Motor]
17-03-17 18:21:28.278 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:21:28.288 -07 000000610 INF: FPGA: 'ZDACW 37640' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:28.288 -07 000000478 INF: FPGA: Recv ZDACR 37640
17-03-17 18:21:28.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.448 -07 000000475 INF: FPGA: Recv ZSGSRD 36114
17-03-17 18:21:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.458 -07 000000429 INF: FPGA: Recv ZSGSRD 36113
17-03-17 18:21:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.468 -07 000000512 INF: FPGA: Recv ZSGSRD 36112
17-03-17 18:21:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.478 -07 000000512 INF: FPGA: Recv ZSGSRD 36110
17-03-17 18:21:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.488 -07 000000382 INF: FPGA: Recv ZSGSRD 36110
17-03-17 18:21:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.498 -07 000000478 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:21:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.508 -07 000000569 INF: FPGA: Recv ZSGSRD 36110
17-03-17 18:21:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.518 -07 000000478 INF: FPGA: Recv ZSGSRD 36110
17-03-17 18:21:28.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.528 -07 000000382 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:21:28.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:28.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:28.538 -07 000000448 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:21:28.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:28.548 -07 000000382 INF: FPGA: Recv ZPIEZORD 32060
17-03-17 18:21:28.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:28.558 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.9 V.
17-03-17 18:21:28.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36113 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36112 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36110 (-171.4 uncal um), Max = 36118 (-171.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:21:28.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36113, posNoise = 5, negNoise = 3
17-03-17 18:21:28.558 -07 000000610 INF: Z Motor: After move to -0.172305, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:28.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:21:28.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:28.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:28.558 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:28.558 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:28.558 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:28.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:28.558 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:28.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:28.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:21:28.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:28.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:21:28.558 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:21:28.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:28.558 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:28.578 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:21:28.578 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:21:28.578 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 18:21:28.578 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:28.588 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:21:28.588 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:28.598 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:21:28.598 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-17 18:21:28.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37817 150\n [Camera]
17-03-17 18:21:28.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:29.188 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:29.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:29.188 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:29.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:29.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:29.198 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:29.198 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:29.198 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:21:29.198 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:29.198 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:21:29.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37817 777
17-03-17 18:21:29.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:21:29.578 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:21:29.578 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:21:29.578 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:29.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:21:29.578 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:21:29.578 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:29.588 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:29.588 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:29.588 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:21:29.588 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:21:29.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:29.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:29.718 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:29.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:29.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:29.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:29.838 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:29.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:21:29.848 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:29.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:21:29.908 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:29.918 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:29.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37817 150' command took 2 ms to send, 1310 ms to get response, and 1314 ms overall
17-03-17 18:21:29.918 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172497
17-03-17 18:21:29.918 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17250 mm
17-03-17 18:21:29.918 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:29.918 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37682, sync = True, waitForSettling = False)
17-03-17 18:21:29.918 -07 000000480 INF: Z Motor: Moving to -0.172497 mm, started at -0.172321 mm, distance = -0.18 um
17-03-17 18:21:29.918 -07 000000480 INF: FPGA: Xmit ZDACW 37682\n [Z Motor]
17-03-17 18:21:29.918 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:21:29.918 -07 000000429 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 18:21:29.918 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:21:29.928 -07 000000480 INF: FPGA: 'ZDACW 37682' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:29.928 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:29.928 -07 000000547 INF: FPGA: Recv ZDACR 37682
17-03-17 18:21:29.938 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:29.938 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:29.938 -07 000000480 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 18:21:29.938 -07 000000382 INF: FPGA: Recv YRDPOS 122698
17-03-17 18:21:29.948 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:21:29.948 -07 000000429 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:29.948 -07 000000429 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:29.948 -07 000000429 INF: Y Motor: Moving 1330 steps2
17-03-17 18:21:29.948 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:30.158 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.012614,
17-03-17 18:21:30.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:21:30.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:21:30.238 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:30.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:21:30.248 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:21:30.248 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:30.248 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:21:30.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 18:21:30.248 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:30.258 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:21:30.328 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:21:30.328 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 377 ms to get response, and 386 ms overall
17-03-17 18:21:30.358 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:30.368 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:21:30.368 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:21:30.368 -07 000000429 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:30.368 -07 000000429 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 18:21:30.368 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.831 mm, average velocity = 2.154 mm/sec
17-03-17 18:21:31.318 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:31.318 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:21:31.328 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:31.328 -07 000000429 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:31.348 -07 000000429 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:31.348 -07 000000429 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:31.348 -07 000000429 INF: Y Motor: Moved to 60.7329 after 1424 ms (table move)
17-03-17 18:21:31.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172497 mm (DAC = 37682)
17-03-17 18:21:31.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.348 -07 000000512 INF: FPGA: Recv ZSGSRD 36146
17-03-17 18:21:31.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:21:31.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.358 -07 000000478 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:21:31.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36145
17-03-17 18:21:31.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:21:31.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.388 -07 000000382 INF: FPGA: Recv ZSGSRD 36143
17-03-17 18:21:31.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.398 -07 000000382 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:21:31.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.408 -07 000000382 INF: FPGA: Recv ZSGSRD 36137
17-03-17 18:21:31.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.418 -07 000000569 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:21:31.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.428 -07 000000478 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:21:31.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.438 -07 000000429 INF: FPGA: Recv ZSGSRD 36142
17-03-17 18:21:31.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:31.448 -07 000000569 INF: FPGA: Recv ZPIEZORD 32128
17-03-17 18:21:31.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.458 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.750 V. Piezo Error = -8.9 V.
17-03-17 18:21:31.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36140 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36135 (-171.6 uncal um), Max = 36146 (-171.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:21:31.458 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36140, posNoise = 6, negNoise = 5
17-03-17 18:21:31.458 -07 000000610 INF: Z Motor: After move to -0.172497, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:31.458 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 108 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:21:31.458 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:31.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:21:31.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:31.508 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.172494378814376. ----------
17-03-17 18:21:31.508 -07 000000610 INF: Cycle	12	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:31.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37505, sync = True, waitForSettling = True)
17-03-17 18:21:31.508 -07 000000610 INF: Z Motor: Moving to -0.171687 mm, started at -0.172494 mm, distance = 0.81 um
17-03-17 18:21:31.508 -07 000000610 INF: FPGA: Xmit ZDACW 37505\n [Z Motor]
17-03-17 18:21:31.508 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:21:31.518 -07 000000610 INF: FPGA: 'ZDACW 37505' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:31.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:31.518 -07 000000569 INF: FPGA: Recv ZDACR 37505
17-03-17 18:21:31.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:31.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:31.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:31.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.678 -07 000000429 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:21:31.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36014
17-03-17 18:21:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.698 -07 000000478 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:21:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:21:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:21:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.718 -07 000000429 INF: FPGA: Recv ZSGSRD 36013
17-03-17 18:21:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.728 -07 000000569 INF: FPGA: Recv ZSGSRD 36016
17-03-17 18:21:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.738 -07 000000478 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:21:31.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.748 -07 000000569 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:21:31.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.758 -07 000000512 INF: FPGA: Recv ZSGSRD 36016
17-03-17 18:21:31.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:31.768 -07 000000429 INF: FPGA: Recv ZSGSRD 36013
17-03-17 18:21:31.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:31.778 -07 000000478 INF: FPGA: Recv ZPIEZORD 31956
17-03-17 18:21:31.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:31.788 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.0 V.
17-03-17 18:21:31.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36016 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36016 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36013 (-170.8 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:21:31.788 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36016, posNoise = 2, negNoise = 3
17-03-17 18:21:31.788 -07 000000610 INF: Z Motor: After move to -0.171687, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:31.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:21:31.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:31.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:31.788 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:31.788 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:31.788 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:31.788 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:31.788 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:31.788 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:31.788 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:21:31.788 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:31.788 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:31.788 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:31.788 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:21:31.798 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:31.798 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:31.798 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:31.798 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:21:31.798 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:31.798 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:31.798 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:31.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37682 150\n [Camera]
17-03-17 18:21:32.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:32.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:32.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:32.398 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:32.398 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:32.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1124240600, 0x0, 391868352) start.
17-03-17 18:21:32.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:32.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:32.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:32.408 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:32.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:21:32.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37682 777
17-03-17 18:21:32.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:32.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1124240600, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:21:32.798 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:21:32.798 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:32.798 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:32.798 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:21:32.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:21:32.798 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:21:32.798 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:32.798 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:32.808 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:21:32.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:32.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:32.928 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:33.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:33.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:33.038 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:33.038 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:33.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:21:33.048 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:33.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:21:33.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:21:33.118 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:33.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37682 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-17 18:21:33.128 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172310
17-03-17 18:21:33.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17231 mm
17-03-17 18:21:33.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:33.128 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:21:33.128 -07 000000476 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 18:21:33.128 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:33.128 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37641, sync = True, waitForSettling = False)
17-03-17 18:21:33.128 -07 000000547 INF: Z Motor: Moving to -0.172309 mm, started at -0.171698 mm, distance = -0.61 um
17-03-17 18:21:33.128 -07 000000448 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:21:33.138 -07 000000547 INF: FPGA: Xmit ZDACW 37641\n [Z Motor]
17-03-17 18:21:33.138 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:33.138 -07 000000476 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:33.138 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:21:33.138 -07 000000476 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:33.138 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 18:21:33.148 -07 000000547 INF: FPGA: 'ZDACW 37641' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:21:33.148 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:33.158 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:33.158 -07 000000480 INF: FPGA: Recv ZDACR 37641
17-03-17 18:21:33.168 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:21:33.168 -07 000000547 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:21:33.428 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:21:33.428 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:21:33.428 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:33.428 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:21:33.428 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:21:33.428 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:33.438 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:33.438 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 18:21:33.438 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:33.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:21:33.518 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:21:33.518 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:21:33.558 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:33.558 -07 000000547 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:21:33.568 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:33.568 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:33.568 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:21:33.568 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.187 mm/sec
17-03-17 18:21:34.518 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:34.518 -07 000000382 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:21:34.528 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:34.528 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:34.548 -07 000000476 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:34.548 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:34.548 -07 000000476 INF: Y Motor: Moved to 61.5640 after 1417 ms (table move)
17-03-17 18:21:34.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172309 mm (DAC = 37641)
17-03-17 18:21:34.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.548 -07 000000547 INF: FPGA: Recv ZSGSRD 36105
17-03-17 18:21:34.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:34.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.558 -07 000000547 INF: FPGA: Recv ZSGSRD 36108
17-03-17 18:21:34.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.568 -07 000000547 INF: FPGA: Recv ZSGSRD 36109
17-03-17 18:21:34.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.578 -07 000000476 INF: FPGA: Recv ZSGSRD 36111
17-03-17 18:21:34.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.588 -07 000000475 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:21:34.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.598 -07 000000475 INF: FPGA: Recv ZSGSRD 36120
17-03-17 18:21:34.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.608 -07 000000448 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:21:34.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:21:34.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.628 -07 000000448 INF: FPGA: Recv ZSGSRD 36108
17-03-17 18:21:34.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.638 -07 000000475 INF: FPGA: Recv ZSGSRD 36109
17-03-17 18:21:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:34.648 -07 000000475 INF: FPGA: Recv ZPIEZORD 32120
17-03-17 18:21:34.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.658 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.744 V. Piezo Error = -8.8 V.
17-03-17 18:21:34.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36112 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36110 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36105 (-171.4 uncal um), Max = 36120 (-171.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:21:34.658 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36112, posNoise = 8, negNoise = 7
17-03-17 18:21:34.658 -07 000000610 INF: Z Motor: After move to -0.172309, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:34.658 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 108 ms (allowed 150 ms), total time = 1527 ms
17-03-17 18:21:34.658 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:34.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 18:21:34.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:34.708 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.172314500874407. ----------
17-03-17 18:21:34.708 -07 000000610 INF: Cycle	12	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:34.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37464, sync = True, waitForSettling = True)
17-03-17 18:21:34.708 -07 000000610 INF: Z Motor: Moving to -0.171499 mm, started at -0.172315 mm, distance = 0.82 um
17-03-17 18:21:34.708 -07 000000610 INF: FPGA: Xmit ZDACW 37464\n [Z Motor]
17-03-17 18:21:34.718 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:21:34.718 -07 000000610 INF: FPGA: 'ZDACW 37464' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:21:34.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:34.718 -07 000000475 INF: FPGA: Recv ZDACR 37464
17-03-17 18:21:34.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:21:34.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.878 -07 000000448 INF: FPGA: Recv ZSGSRD 35988
17-03-17 18:21:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35990
17-03-17 18:21:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.898 -07 000000382 INF: FPGA: Recv ZSGSRD 35986
17-03-17 18:21:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.908 -07 000000448 INF: FPGA: Recv ZSGSRD 35989
17-03-17 18:21:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.918 -07 000000448 INF: FPGA: Recv ZSGSRD 35995
17-03-17 18:21:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.928 -07 000000480 INF: FPGA: Recv ZSGSRD 35990
17-03-17 18:21:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.938 -07 000000569 INF: FPGA: Recv ZSGSRD 35984
17-03-17 18:21:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.948 -07 000000382 INF: FPGA: Recv ZSGSRD 35985
17-03-17 18:21:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35985
17-03-17 18:21:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:34.968 -07 000000475 INF: FPGA: Recv ZSGSRD 35992
17-03-17 18:21:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:34.978 -07 000000382 INF: FPGA: Recv ZPIEZORD 31931
17-03-17 18:21:34.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:34.988 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -9.0 V.
17-03-17 18:21:34.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35988 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35988 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35984 (-170.6 uncal um), Max = 35995 (-170.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:21:34.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35988, posNoise = 7, negNoise = 4
17-03-17 18:21:34.988 -07 000000610 INF: Z Motor: After move to -0.171499, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:34.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 18:21:34.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:34.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:34.988 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:34.988 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:34.988 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:34.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:34.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:34.988 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:34.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:21:34.988 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:34.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:21:34.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:34.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:34.998 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:34.998 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:21:34.998 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:35.008 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:21:35.008 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:35.008 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:21:35.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:35.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37641 150\n [Camera]
17-03-17 18:21:35.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:35.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:35.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:35.598 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:35.598 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:35.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1124240600, 0x0, 391868352) start.
17-03-17 18:21:35.598 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:35.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:35.598 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:35.598 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:35.598 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:21:35.678 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.007176,
17-03-17 18:21:35.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37641 777
17-03-17 18:21:35.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:35.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1124240600, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:21:35.978 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:21:35.978 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:35.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:21:35.978 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:21:35.978 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:35.988 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:35.988 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:21:35.988 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:21:35.998 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:21:36.128 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:36.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:36.128 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:36.128 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:36.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:21:36.128 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:36.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:36.138 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:36.138 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:36.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:21:36.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:36.318 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:36.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37641 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:21:36.328 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171631
17-03-17 18:21:36.328 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17163 mm
17-03-17 18:21:36.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:36.328 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:21:36.328 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 18:21:36.328 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:36.328 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37493, sync = True, waitForSettling = False)
17-03-17 18:21:36.328 -07 000000382 INF: Z Motor: Moving to -0.171632 mm, started at -0.171518 mm, distance = -0.11 um
17-03-17 18:21:36.328 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:21:36.338 -07 000000382 INF: FPGA: Xmit ZDACW 37493\n [Z Motor]
17-03-17 18:21:36.338 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:36.338 -07 000000569 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:36.338 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:36.338 -07 000000569 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:21:36.338 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:21:36.348 -07 000000382 INF: FPGA: 'ZDACW 37493' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:21:36.348 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:36.358 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:36.358 -07 000000429 INF: FPGA: Recv ZDACR 37493
17-03-17 18:21:36.368 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:21:36.368 -07 000000382 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:21:36.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:21:36.508 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:21:36.508 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:36.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:21:36.508 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:21:36.508 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:36.518 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:21:36.518 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:21:36.518 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:21:36.528 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:21:36.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:36.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:36.718 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:21:36.718 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:21:36.758 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:36.758 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:21:36.768 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:36.768 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:36.768 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:21:36.768 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-17 18:21:37.718 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:37.718 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:21:37.728 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:37.728 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:37.748 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:37.748 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:37.748 -07 000000569 INF: Y Motor: Moved to 62.3955 after 1415 ms (table move)
17-03-17 18:21:37.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171632 mm (DAC = 37493)
17-03-17 18:21:37.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36014
17-03-17 18:21:37.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:37.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.758 -07 000000462 INF: FPGA: Recv ZSGSRD 36008
17-03-17 18:21:37.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.768 -07 000000569 INF: FPGA: Recv ZSGSRD 36011
17-03-17 18:21:37.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.778 -07 000000448 INF: FPGA: Recv ZSGSRD 36007
17-03-17 18:21:37.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.788 -07 000000429 INF: FPGA: Recv ZSGSRD 36011
17-03-17 18:21:37.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.798 -07 000000569 INF: FPGA: Recv ZSGSRD 36009
17-03-17 18:21:37.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.808 -07 000000608 INF: FPGA: Recv ZSGSRD 36002
17-03-17 18:21:37.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.818 -07 000000448 INF: FPGA: Recv ZSGSRD 36002
17-03-17 18:21:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.828 -07 000000608 INF: FPGA: Recv ZSGSRD 36003
17-03-17 18:21:37.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:37.838 -07 000000475 INF: FPGA: Recv ZSGSRD 36007
17-03-17 18:21:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:37.848 -07 000000480 INF: FPGA: Recv ZPIEZORD 31973
17-03-17 18:21:37.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.858 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -8.9 V.
17-03-17 18:21:37.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36007 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36008 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36002 (-170.7 uncal um), Max = 36014 (-170.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:21:37.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36007, posNoise = 7, negNoise = 5
17-03-17 18:21:37.858 -07 000000610 INF: Z Motor: After move to -0.171632, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:37.858 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 110 ms (allowed 150 ms), total time = 1527 ms
17-03-17 18:21:37.858 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:37.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 18:21:37.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:37.898 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171639958599522. ----------
17-03-17 18:21:37.898 -07 000000610 INF: Cycle	12	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:37.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37316, sync = True, waitForSettling = True)
17-03-17 18:21:37.898 -07 000000610 INF: Z Motor: Moving to -0.170822 mm, started at -0.171640 mm, distance = 0.82 um
17-03-17 18:21:37.898 -07 000000610 INF: FPGA: Xmit ZDACW 37316\n [Z Motor]
17-03-17 18:21:37.898 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:21:37.908 -07 000000610 INF: FPGA: 'ZDACW 37316' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:37.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:37.908 -07 000000475 INF: FPGA: Recv ZDACR 37316
17-03-17 18:21:37.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:37.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:38.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.068 -07 000000569 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:21:38.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35880
17-03-17 18:21:38.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.088 -07 000000569 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:21:38.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35886
17-03-17 18:21:38.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35878
17-03-17 18:21:38.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.118 -07 000000478 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:21:38.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.128 -07 000000475 INF: FPGA: Recv ZSGSRD 35885
17-03-17 18:21:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.138 -07 000000382 INF: FPGA: Recv ZSGSRD 35886
17-03-17 18:21:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.148 -07 000000448 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:21:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:38.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:21:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:38.168 -07 000000512 INF: FPGA: Recv ZPIEZORD 31801
17-03-17 18:21:38.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:38.178 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -9.0 V.
17-03-17 18:21:38.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35884 (-170.0 uncal um), Error = 0.8 uncal um, Median = 35884 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35878 (-169.9 uncal um), Max = 35888 (-170.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:21:38.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35884, posNoise = 4, negNoise = 6
17-03-17 18:21:38.178 -07 000000610 INF: Z Motor: After move to -0.170822, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:38.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:21:38.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:38.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:38.178 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:38.178 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:38.178 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:38.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:38.178 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:38.178 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:38.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:21:38.178 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:38.178 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:38.178 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:38.188 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:21:38.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:38.188 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:21:38.188 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:38.198 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:38.198 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:38.198 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:21:38.198 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:38.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37493 150\n [Camera]
17-03-17 18:21:38.408 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:21:38.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:38.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:38.788 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:38.788 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:38.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:21:38.798 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:38.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:38.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:38.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:38.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:21:38.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37493 777
17-03-17 18:21:39.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:39.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:21:39.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:21:39.178 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:39.178 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:39.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:21:39.278 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:21:39.278 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:21:39.278 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:39.288 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:39.288 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 18:21:39.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:39.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:39.318 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:39.318 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:39.318 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:21:39.328 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:39.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:39.328 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:39.328 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:39.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:21:39.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:39.518 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:39.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37493 150' command took 2 ms to send, 1310 ms to get response, and 1314 ms overall
17-03-17 18:21:39.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:21:39.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170849780506085. ------
17-03-17 18:21:39.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:21:39.518 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17745 mm
17-03-17 18:21:39.518 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:39.518 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:21:39.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:39.528 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:21:39.528 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:21:39.528 -07 000000480 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 18:21:39.538 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:39.698 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:21:39.698 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:21:39.698 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:39.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:21:39.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:21:39.708 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:39.708 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:39.708 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:21:39.708 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:39.718 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:21:39.718 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38763, sync = True, waitForSettling = False)
17-03-17 18:21:39.718 -07 000000608 INF: Z Motor: Moving to -0.177446 mm, started at -0.170850 mm, distance = -6.60 um
17-03-17 18:21:39.718 -07 000000608 INF: FPGA: Xmit ZDACW 38763\n [Z Motor]
17-03-17 18:21:39.728 -07 000000478 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:21:39.728 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:21:39.728 -07 000000608 INF: FPGA: 'ZDACW 38763' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 18:21:39.728 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:39.728 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:21:39.728 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:21:39.728 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 182 ms to get response, and 200 ms overall
17-03-17 18:21:39.728 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:39.728 -07 000000480 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:39.728 -07 000000480 INF: Y Motor: Moving 1339 steps-15
17-03-17 18:21:39.728 -07 000000478 INF: FPGA: Recv ZDACR 38763
17-03-17 18:21:39.738 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:21:39.738 -07 000000608 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 18:21:39.738 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:40.108 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:21:40.108 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 18:21:40.148 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:40.148 -07 000000382 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:21:40.158 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:21:40.158 -07 000000480 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:40.158 -07 000000480 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:21:40.158 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 18:21:41.038 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.011254,
17-03-17 18:21:41.108 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:41.108 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:21:41.118 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:41.118 -07 000000480 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:41.138 -07 000000480 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:41.138 -07 000000480 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:41.138 -07 000000480 INF: Y Motor: Moved to 63.2241 after 1610 ms (table move)
17-03-17 18:21:41.138 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177446 mm (DAC = 38763)
17-03-17 18:21:41.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.138 -07 000000547 INF: FPGA: Recv ZSGSRD 36913
17-03-17 18:21:41.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:41.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.148 -07 000000480 INF: FPGA: Recv ZSGSRD 36913
17-03-17 18:21:41.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.158 -07 000000608 INF: FPGA: Recv ZSGSRD 36901
17-03-17 18:21:41.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.168 -07 000000623 INF: FPGA: Recv ZSGSRD 36915
17-03-17 18:21:41.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.178 -07 000000608 INF: FPGA: Recv ZSGSRD 36916
17-03-17 18:21:41.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36916
17-03-17 18:21:41.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.198 -07 000000478 INF: FPGA: Recv ZSGSRD 36913
17-03-17 18:21:41.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.208 -07 000000480 INF: FPGA: Recv ZSGSRD 36909
17-03-17 18:21:41.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.218 -07 000000478 INF: FPGA: Recv ZSGSRD 36907
17-03-17 18:21:41.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.228 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:41.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36913
17-03-17 18:21:41.238 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.238 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:41.238 -07 000000478 INF: FPGA: Recv ZPIEZORD 33173
17-03-17 18:21:41.248 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.258 -07 000000429 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.915 V. Piezo Error = -8.3 V.
17-03-17 18:21:41.258 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36912 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36913 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36901 (-176.5 uncal um), Max = 36916 (-176.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:21:41.258 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36912, posNoise = 4, negNoise = 11
17-03-17 18:21:41.258 -07 000000429 INF: Z Motor: After move to -0.177446, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:41.258 -07 000000429 INF: Z Motor: Settle wait time = 1420 ms, measure time = 117 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:21:41.258 -07 000000429 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:41.298 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1773 ms
17-03-17 18:21:41.298 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:41.298 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:41.298 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:21:41.298 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:41.298 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:41.308 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:21:41.308 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:21:41.308 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:21:41.308 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:21:41.318 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:21:41.318 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:21:41.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:21:41.358 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:21:41.558 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:21:41.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:21:41.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:21:41.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:21:41.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:41.598 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:21:41.598 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:21:41.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:21:41.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:21:41.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:41.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:21:41.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:21:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:41.698 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:21:41.698 -07 000000623 INF: Autofocus start
17-03-17 18:21:41.698 -07 000000623 INF: MeasureProfile start
17-03-17 18:21:41.698 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:21:41.708 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:41.708 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:21:41.708 -07 000000623 INF: MeasureProfile done
17-03-17 18:21:41.708 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:21:41.708 -07 000000623 INF: Autofocus finished
17-03-17 18:21:41.908 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:21:41.908 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:21:41.918 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177453870587815. ----------
17-03-17 18:21:41.918 -07 000000610 INF: Cycle	12	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:41.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37296, sync = True, waitForSettling = True)
17-03-17 18:21:41.918 -07 000000610 INF: Z Motor: Moving to -0.170730 mm, started at -0.177454 mm, distance = 6.72 um
17-03-17 18:21:41.918 -07 000000610 INF: FPGA: Xmit ZDACW 37296\n [Z Motor]
17-03-17 18:21:41.918 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:21:41.928 -07 000000610 INF: FPGA: 'ZDACW 37296' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:41.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:41.928 -07 000000623 INF: FPGA: Recv ZDACR 37296
17-03-17 18:21:41.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:41.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.088 -07 000000547 INF: FPGA: Recv ZSGSRD 35864
17-03-17 18:21:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35868
17-03-17 18:21:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35864
17-03-17 18:21:42.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.118 -07 000000623 INF: FPGA: Recv ZSGSRD 35867
17-03-17 18:21:42.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.128 -07 000000547 INF: FPGA: Recv ZSGSRD 35870
17-03-17 18:21:42.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.138 -07 000000608 INF: FPGA: Recv ZSGSRD 35866
17-03-17 18:21:42.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35864
17-03-17 18:21:42.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.158 -07 000000478 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:21:42.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.168 -07 000000429 INF: FPGA: Recv ZSGSRD 35862
17-03-17 18:21:42.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:42.178 -07 000000623 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:21:42.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:42.188 -07 000000382 INF: FPGA: Recv ZPIEZORD 31777
17-03-17 18:21:42.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:42.198 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -9.0 V.
17-03-17 18:21:42.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35865 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35864 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35862 (-169.8 uncal um), Max = 35870 (-169.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:21:42.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35865, posNoise = 5, negNoise = 3
17-03-17 18:21:42.198 -07 000000610 INF: Z Motor: After move to -0.170730, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:42.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:21:42.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:42.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:42.198 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:42.198 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:42.198 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:42.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:42.198 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:42.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:42.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:42.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:42.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:21:42.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:42.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:21:42.198 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:42.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:21:42.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:42.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:21:42.208 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:21:42.208 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:42.208 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:21:42.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37473 150\n [Camera]
17-03-17 18:21:42.418 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:42.808 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:42.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:42.808 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:42.808 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:42.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:21:42.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:42.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:42.808 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:42.808 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:42.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:21:42.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37473 777
17-03-17 18:21:43.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:43.188 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:21:43.188 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:21:43.188 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:43.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:21:43.188 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:21:43.188 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:43.188 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:43.188 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:21:43.188 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:43.198 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:21:43.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:21:43.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:21:43.338 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:43.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:21:43.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:21:43.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:43.468 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:43.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:21:43.468 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:43.468 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:21:43.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:43.528 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:43.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37473 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-17 18:21:43.528 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171140
17-03-17 18:21:43.528 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17114 mm
17-03-17 18:21:43.528 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:43.538 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37386, sync = True, waitForSettling = False)
17-03-17 18:21:43.538 -07 000000480 INF: Z Motor: Moving to -0.171142 mm, started at -0.170728 mm, distance = -0.41 um
17-03-17 18:21:43.538 -07 000000480 INF: FPGA: Xmit ZDACW 37386\n [Z Motor]
17-03-17 18:21:43.538 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:21:43.538 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 18:21:43.538 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:21:43.548 -07 000000480 INF: FPGA: 'ZDACW 37386' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:21:43.548 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:43.548 -07 000000547 INF: FPGA: Recv ZDACR 37386
17-03-17 18:21:43.558 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:43.558 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:43.558 -07 000000480 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 18:21:43.558 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:21:43.568 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:21:43.568 -07 000000623 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:43.568 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:43.568 -07 000000623 INF: Y Motor: Moving 1342 steps-17
17-03-17 18:21:43.568 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:43.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:21:43.848 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:21:43.848 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:43.848 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:21:43.848 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:21:43.848 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:43.848 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:43.848 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:43.848 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 18:21:43.858 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:21:43.938 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:21:43.938 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 18:21:43.978 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:43.978 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-17 18:21:43.988 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:21:43.988 -07 000000623 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:43.988 -07 000000623 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 18:21:43.988 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-17 18:21:44.938 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:44.938 -07 000000547 INF: FPGA: Recv YRDPOS 131188
17-03-17 18:21:44.948 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:44.948 -07 000000623 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:44.968 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:44.968 -07 000000623 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:44.968 -07 000000623 INF: Y Motor: Moved to 64.0566 after 1428 ms (table move)
17-03-17 18:21:44.968 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171142 mm (DAC = 37386)
17-03-17 18:21:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:44.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:21:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:44.978 -07 000000547 INF: FPGA: Recv ZSGSRD 35935
17-03-17 18:21:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:44.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35938
17-03-17 18:21:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:44.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:44.998 -07 000000480 INF: FPGA: Recv ZSGSRD 35935
17-03-17 18:21:45.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.008 -07 000000480 INF: FPGA: Recv ZSGSRD 35930
17-03-17 18:21:45.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35930
17-03-17 18:21:45.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.028 -07 000000480 INF: FPGA: Recv ZSGSRD 35931
17-03-17 18:21:45.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.038 -07 000000512 INF: FPGA: Recv ZSGSRD 35930
17-03-17 18:21:45.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.048 -07 000000382 INF: FPGA: Recv ZSGSRD 35933
17-03-17 18:21:45.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35919
17-03-17 18:21:45.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:45.068 -07 000000480 INF: FPGA: Recv ZPIEZORD 31872
17-03-17 18:21:45.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.078 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.0 V.
17-03-17 18:21:45.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35932 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35919 (-170.2 uncal um), Max = 35938 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 18:21:45.078 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35932, posNoise = 6, negNoise = 13
17-03-17 18:21:45.078 -07 000000610 INF: Z Motor: After move to -0.171142, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:45.078 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:21:45.078 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:45.128 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:21:45.128 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:45.128 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.17115814268889. ----------
17-03-17 18:21:45.128 -07 000000610 INF: Cycle	12	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:45.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37209, sync = True, waitForSettling = True)
17-03-17 18:21:45.128 -07 000000610 INF: Z Motor: Moving to -0.170332 mm, started at -0.171158 mm, distance = 0.83 um
17-03-17 18:21:45.128 -07 000000610 INF: FPGA: Xmit ZDACW 37209\n [Z Motor]
17-03-17 18:21:45.138 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:21:45.138 -07 000000610 INF: FPGA: 'ZDACW 37209' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:45.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:45.138 -07 000000382 INF: FPGA: Recv ZDACR 37209
17-03-17 18:21:45.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:21:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.308 -07 000000480 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:21:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35807
17-03-17 18:21:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35804
17-03-17 18:21:45.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.338 -07 000000512 INF: FPGA: Recv ZSGSRD 35806
17-03-17 18:21:45.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.348 -07 000000480 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:21:45.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35802
17-03-17 18:21:45.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.368 -07 000000623 INF: FPGA: Recv ZSGSRD 35801
17-03-17 18:21:45.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.378 -07 000000382 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:21:45.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:45.388 -07 000000480 INF: FPGA: Recv ZSGSRD 35810
17-03-17 18:21:45.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:45.398 -07 000000382 INF: FPGA: Recv ZPIEZORD 31706
17-03-17 18:21:45.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:45.408 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.0 V.
17-03-17 18:21:45.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35806 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35801 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:21:45.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35806, posNoise = 4, negNoise = 5
17-03-17 18:21:45.408 -07 000000610 INF: Z Motor: After move to -0.170332, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:45.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 18:21:45.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:45.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:45.408 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:45.408 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:45.408 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:45.408 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:45.408 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:45.408 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:45.408 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:21:45.408 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:45.408 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:21:45.408 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:45.418 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:45.418 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:45.418 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:21:45.418 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:45.428 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:21:45.428 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:45.428 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:45.428 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:45.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37386 150\n [Camera]
17-03-17 18:21:45.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:46.018 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:46.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:46.018 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:46.018 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:46.018 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:21:46.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:46.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:46.028 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:46.028 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:46.028 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:21:46.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37386 777
17-03-17 18:21:46.358 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:46.398 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.008536,
17-03-17 18:21:46.398 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:21:46.398 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:21:46.398 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:46.408 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:46.408 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:21:46.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:21:46.408 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:21:46.408 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:46.408 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:21:46.418 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:21:46.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:46.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:46.548 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:46.548 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:46.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:21:46.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:46.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:46.558 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:46.558 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:46.558 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:21:46.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:46.738 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:46.738 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:46.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37386 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 18:21:46.748 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170709
17-03-17 18:21:46.748 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17071 mm
17-03-17 18:21:46.748 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:46.748 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:21:46.748 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 18:21:46.748 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:46.748 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37291, sync = True, waitForSettling = False)
17-03-17 18:21:46.748 -07 000000512 INF: Z Motor: Moving to -0.170707 mm, started at -0.170349 mm, distance = -0.36 um
17-03-17 18:21:46.748 -07 000000623 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:21:46.758 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:46.758 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:46.758 -07 000000512 INF: FPGA: Xmit ZDACW 37291\n [Z Motor]
17-03-17 18:21:46.758 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:21:46.878 -07 000000512 INF: FPGA: 'ZDACW 37291' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 18:21:46.878 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:46.878 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:46.878 -07 000000480 INF: Y Motor: Moving 1337 steps-12
17-03-17 18:21:46.888 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:46.888 -07 000000429 INF: FPGA: Recv ZDACR 37291
17-03-17 18:21:46.888 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:46.888 -07 000000512 INF: Z Motor: MoveAbsStepped took 135 ms (did NOT wait for settling yet))
17-03-17 18:21:46.938 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:21:46.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:21:46.938 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:21:46.938 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:46.938 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:21:46.938 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:46.938 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:46.938 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:46.938 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:21:46.948 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:21:47.258 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:21:47.258 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 18:21:47.298 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:47.298 -07 000000512 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:21:47.308 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:21:47.308 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:47.308 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:21:47.308 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.836 mm, average velocity = 2.200 mm/sec
17-03-17 18:21:48.258 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:48.258 -07 000000608 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:21:48.268 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:48.268 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:48.288 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:48.288 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:48.288 -07 000000480 INF: Y Motor: Moved to 64.8789 after 1537 ms (table move)
17-03-17 18:21:48.288 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170707 mm (DAC = 37291)
17-03-17 18:21:48.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.288 -07 000000476 INF: FPGA: Recv ZSGSRD 35857
17-03-17 18:21:48.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:48.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35865
17-03-17 18:21:48.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.308 -07 000000480 INF: FPGA: Recv ZSGSRD 35862
17-03-17 18:21:48.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.318 -07 000000476 INF: FPGA: Recv ZSGSRD 35865
17-03-17 18:21:48.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.328 -07 000000512 INF: FPGA: Recv ZSGSRD 35867
17-03-17 18:21:48.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:21:48.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.348 -07 000000429 INF: FPGA: Recv ZSGSRD 35869
17-03-17 18:21:48.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:21:48.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.368 -07 000000476 INF: FPGA: Recv ZSGSRD 35855
17-03-17 18:21:48.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.378 -07 000000512 INF: FPGA: Recv ZSGSRD 35861
17-03-17 18:21:48.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:48.388 -07 000000476 INF: FPGA: Recv ZPIEZORD 31810
17-03-17 18:21:48.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.398 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -8.9 V.
17-03-17 18:21:48.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35862 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35862 (-169.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35855 (-169.8 uncal um), Max = 35869 (-169.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:21:48.398 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35862, posNoise = 7, negNoise = 7
17-03-17 18:21:48.398 -07 000000610 INF: Z Motor: After move to -0.170707, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:48.398 -07 000000610 INF: Z Motor: Settle wait time = 1539 ms, measure time = 106 ms (allowed 150 ms), total time = 1645 ms
17-03-17 18:21:48.398 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:48.448 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1697 ms
17-03-17 18:21:48.448 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:48.448 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.170708447838966. ----------
17-03-17 18:21:48.448 -07 000000610 INF: Cycle	12	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:48.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37115, sync = True, waitForSettling = True)
17-03-17 18:21:48.448 -07 000000610 INF: Z Motor: Moving to -0.169902 mm, started at -0.170708 mm, distance = 0.81 um
17-03-17 18:21:48.448 -07 000000610 INF: FPGA: Xmit ZDACW 37115\n [Z Motor]
17-03-17 18:21:48.458 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:21:48.458 -07 000000610 INF: FPGA: 'ZDACW 37115' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:48.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:48.458 -07 000000608 INF: FPGA: Recv ZDACR 37115
17-03-17 18:21:48.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:48.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.618 -07 000000480 INF: FPGA: Recv ZSGSRD 35742
17-03-17 18:21:48.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:48.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.628 -07 000000429 INF: FPGA: Recv ZSGSRD 35740
17-03-17 18:21:48.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.638 -07 000000512 INF: FPGA: Recv ZSGSRD 35734
17-03-17 18:21:48.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35739
17-03-17 18:21:48.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.658 -07 000000608 INF: FPGA: Recv ZSGSRD 35732
17-03-17 18:21:48.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.668 -07 000000480 INF: FPGA: Recv ZSGSRD 35740
17-03-17 18:21:48.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.678 -07 000000476 INF: FPGA: Recv ZSGSRD 35736
17-03-17 18:21:48.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35736
17-03-17 18:21:48.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.698 -07 000000608 INF: FPGA: Recv ZSGSRD 35741
17-03-17 18:21:48.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:48.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35738
17-03-17 18:21:48.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:48.718 -07 000000476 INF: FPGA: Recv ZPIEZORD 31612
17-03-17 18:21:48.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:48.728 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.1 V.
17-03-17 18:21:48.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35738 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35732 (-169.0 uncal um), Max = 35742 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:21:48.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35738, posNoise = 4, negNoise = 6
17-03-17 18:21:48.728 -07 000000610 INF: Z Motor: After move to -0.169902, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:48.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 18:21:48.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:48.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:48.728 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:48.728 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:48.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:48.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:48.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:48.728 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:48.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:48.728 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:48.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:21:48.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:48.738 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:48.738 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:48.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:21:48.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:48.738 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:48.748 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:21:48.748 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:21:48.748 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:48.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37291 150\n [Camera]
17-03-17 18:21:48.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:49.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:21:49.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:21:49.338 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:49.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:21:49.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:21:49.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:49.348 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:49.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:21:49.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:49.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:21:49.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37291 777
17-03-17 18:21:49.678 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:49.718 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:21:49.718 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:21:49.728 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:49.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 18:21:49.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 18:21:49.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:49.728 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:49.728 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:21:49.728 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:49.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:21:49.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:49.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:49.868 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:49.868 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:49.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:21:49.868 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:49.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:49.878 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:49.878 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:49.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:21:50.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:50.058 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:50.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37291 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:21:50.068 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170363
17-03-17 18:21:50.068 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17036 mm
17-03-17 18:21:50.068 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:50.068 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:21:50.068 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 18:21:50.068 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:50.068 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37216, sync = True, waitForSettling = False)
17-03-17 18:21:50.068 -07 000000382 INF: Z Motor: Moving to -0.170364 mm, started at -0.169912 mm, distance = -0.45 um
17-03-17 18:21:50.068 -07 000000608 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:21:50.078 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:50.078 -07 000000382 INF: FPGA: Xmit ZDACW 37216\n [Z Motor]
17-03-17 18:21:50.078 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:50.078 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:50.078 -07 000000623 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:21:50.078 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:21:50.088 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:50.088 -07 000000382 INF: FPGA: 'ZDACW 37216' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:21:50.098 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:50.098 -07 000000476 INF: FPGA: Recv ZDACR 37216
17-03-17 18:21:50.108 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:21:50.108 -07 000000382 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:21:50.258 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:21:50.258 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:21:50.258 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:50.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:21:50.258 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:21:50.258 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:50.258 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:50.258 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:21:50.258 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:50.268 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:21:50.458 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:21:50.458 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:21:50.518 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:50.518 -07 000000475 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:21:50.528 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:50.528 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:50.528 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:21:50.528 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 18:21:51.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:51.478 -07 000000608 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:21:51.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:51.488 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:51.508 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:51.508 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:51.508 -07 000000623 INF: Y Motor: Moved to 65.7139 after 1440 ms (table move)
17-03-17 18:21:51.508 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170364 mm (DAC = 37216)
17-03-17 18:21:51.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:21:51.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:51.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35806
17-03-17 18:21:51.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:51.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.528 -07 000000608 INF: FPGA: Recv ZSGSRD 35813
17-03-17 18:21:51.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.538 -07 000000476 INF: FPGA: Recv ZSGSRD 35809
17-03-17 18:21:51.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.548 -07 000000475 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:21:51.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.558 -07 000000623 INF: FPGA: Recv ZSGSRD 35811
17-03-17 18:21:51.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35811
17-03-17 18:21:51.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35812
17-03-17 18:21:51.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.588 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:51.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:51.588 -07 000000475 INF: FPGA: Recv ZSGSRD 35817
17-03-17 18:21:51.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35812
17-03-17 18:21:51.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:51.608 -07 000000593 INF: FPGA: Recv ZPIEZORD 31722
17-03-17 18:21:51.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.618 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.0 V.
17-03-17 18:21:51.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35811 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35811 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35806 (-169.5 uncal um), Max = 35817 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:21:51.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35811, posNoise = 6, negNoise = 5
17-03-17 18:21:51.618 -07 000000610 INF: Z Motor: After move to -0.170364, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:51.618 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:21:51.618 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:51.668 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:21:51.668 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:51.668 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.170380813019737. ----------
17-03-17 18:21:51.668 -07 000000610 INF: Cycle	12	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:51.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37039, sync = True, waitForSettling = True)
17-03-17 18:21:51.668 -07 000000610 INF: Z Motor: Moving to -0.169554 mm, started at -0.170381 mm, distance = 0.83 um
17-03-17 18:21:51.668 -07 000000610 INF: FPGA: Xmit ZDACW 37039\n [Z Motor]
17-03-17 18:21:51.668 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:21:51.678 -07 000000610 INF: FPGA: 'ZDACW 37039' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:51.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:51.678 -07 000000475 INF: FPGA: Recv ZDACR 37039
17-03-17 18:21:51.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:51.758 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.005817,
17-03-17 18:21:51.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.838 -07 000000475 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:21:51.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:51.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.848 -07 000000448 INF: FPGA: Recv ZSGSRD 35689
17-03-17 18:21:51.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.858 -07 000000593 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:21:51.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.868 -07 000000448 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:21:51.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.878 -07 000000593 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:21:51.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.888 -07 000000475 INF: FPGA: Recv ZSGSRD 35686
17-03-17 18:21:51.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35687
17-03-17 18:21:51.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.908 -07 000000448 INF: FPGA: Recv ZSGSRD 35686
17-03-17 18:21:51.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.918 -07 000000593 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:21:51.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:51.928 -07 000000448 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:21:51.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:51.938 -07 000000429 INF: FPGA: Recv ZPIEZORD 31567
17-03-17 18:21:51.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:51.948 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.1 V.
17-03-17 18:21:51.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35684 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35684 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35680 (-168.7 uncal um), Max = 35689 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:21:51.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35684, posNoise = 5, negNoise = 4
17-03-17 18:21:51.948 -07 000000610 INF: Z Motor: After move to -0.169554, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:51.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:21:51.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:51.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:51.948 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:51.948 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:51.948 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:51.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:51.948 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:51.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:51.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:21:51.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:51.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:51.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:51.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:21:51.958 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:51.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:51.958 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:51.968 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:21:51.968 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:51.968 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:21:51.968 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:51.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37216 150\n [Camera]
17-03-17 18:21:52.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:52.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:21:52.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:21:52.568 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:52.568 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:52.568 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:21:52.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:21:52.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:21:52.568 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:52.568 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:52.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:21:52.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37216 777
17-03-17 18:21:52.898 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:52.938 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:21:52.938 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:21:52.938 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:52.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:21:52.938 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:21:52.948 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:52.948 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:52.948 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:52.948 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:21:52.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:21:53.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:21:53.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:21:53.088 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:53.088 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:53.088 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:21:53.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:21:53.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:21:53.098 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:53.098 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:53.098 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:21:53.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:53.288 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:53.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37216 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-17 18:21:53.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:21:53.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169564938077733. ------
17-03-17 18:21:53.288 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:21:53.288 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17604 mm
17-03-17 18:21:53.288 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:53.298 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:21:53.298 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:21:53.298 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:21:53.298 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:21:53.298 -07 000000475 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 18:21:53.298 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38456, sync = True, waitForSettling = False)
17-03-17 18:21:53.298 -07 000000438 INF: Z Motor: Moving to -0.176040 mm, started at -0.169565 mm, distance = -6.48 um
17-03-17 18:21:53.308 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:53.308 -07 000000623 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:21:53.318 -07 000000438 INF: FPGA: Xmit ZDACW 38456\n [Z Motor]
17-03-17 18:21:53.318 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:21:53.318 -07 000000475 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:53.318 -07 000000475 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:53.318 -07 000000475 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:21:53.318 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:21:53.328 -07 000000438 INF: FPGA: 'ZDACW 38456' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:21:53.328 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:53.328 -07 000000547 INF: FPGA: Recv ZDACR 38456
17-03-17 18:21:53.338 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:53.338 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:53.338 -07 000000438 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:21:53.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:21:53.468 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:21:53.468 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:53.478 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:21:53.478 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:21:53.478 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:53.478 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:53.478 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:53.478 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:21:53.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:21:53.498 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:21:53.498 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:21:53.708 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:21:53.708 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:21:53.748 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:53.748 -07 000000462 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:21:53.758 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:21:53.758 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:53.758 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:21:53.758 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 18:21:54.708 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:54.708 -07 000000608 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:21:54.718 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:54.718 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:54.738 -07 000000475 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:54.738 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:21:54.738 -07 000000475 INF: Y Motor: Moved to 66.5391 after 1443 ms (table move)
17-03-17 18:21:54.748 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176040 mm (DAC = 38456)
17-03-17 18:21:54.748 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.748 -07 000000382 INF: FPGA: Recv ZSGSRD 36692
17-03-17 18:21:54.758 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.758 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.758 -07 000000438 INF: FPGA: Recv ZSGSRD 36692
17-03-17 18:21:54.768 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.768 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.768 -07 000000623 INF: FPGA: Recv ZSGSRD 36693
17-03-17 18:21:54.778 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.778 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.778 -07 000000480 INF: FPGA: Recv ZSGSRD 36698
17-03-17 18:21:54.788 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.808 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.808 -07 000000462 INF: FPGA: Recv ZSGSRD 36688
17-03-17 18:21:54.818 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:21:54.838 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.838 -07 000000608 INF: FPGA: Recv ZSGSRD 36690
17-03-17 18:21:54.848 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:21:54.858 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.858 -07 000000547 INF: FPGA: Recv ZSGSRD 36693
17-03-17 18:21:54.868 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:21:54.868 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.868 -07 000000593 INF: FPGA: Recv ZSGSRD 36695
17-03-17 18:21:54.878 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.878 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.878 -07 000000429 INF: FPGA: Recv ZSGSRD 36693
17-03-17 18:21:54.888 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.888 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:54.888 -07 000000475 INF: FPGA: Recv ZSGSRD 36692
17-03-17 18:21:54.898 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.898 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:54.898 -07 000000382 INF: FPGA: Recv ZPIEZORD 32948
17-03-17 18:21:54.908 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:54.908 -07 000000478 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.3 V.
17-03-17 18:21:54.908 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36693 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36692 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36688 (-175.1 uncal um), Max = 36698 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:21:54.908 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36693, posNoise = 5, negNoise = 5
17-03-17 18:21:54.908 -07 000000478 INF: Z Motor: After move to -0.176040, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:54.908 -07 000000478 INF: Z Motor: Settle wait time = 1446 ms, measure time = 161 ms (allowed 150 ms), total time = 1607 ms
17-03-17 18:21:54.908 -07 000000478 INF: Z Motor: Warning: Actual position measuring time = 161 ms, longer than max expected time of 150 ms
17-03-17 18:21:54.908 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 18:21:54.908 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:54.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:54.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:54.918 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:54.918 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:21:54.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:54.918 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:54.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:54.918 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:21:54.918 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:54.918 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:21:54.928 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:21:54.928 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:21:54.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:21:54.978 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:21:55.178 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:21:55.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:21:55.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:21:55.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:21:55.218 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:21:55.218 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:21:55.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:21:55.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:21:55.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:55.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:21:55.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:21:55.318 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:21:55.318 -07 000000569 INF: Autofocus start
17-03-17 18:21:55.318 -07 000000569 INF: MeasureProfile start
17-03-17 18:21:55.318 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:21:55.328 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:55.328 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:21:55.328 -07 000000569 INF: MeasureProfile done
17-03-17 18:21:55.328 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:21:55.328 -07 000000569 INF: Autofocus finished
17-03-17 18:21:55.528 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:21:55.528 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:21:55.528 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.17604696812877. ----------
17-03-17 18:21:55.538 -07 000000610 INF: Cycle	12	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:55.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36989, sync = True, waitForSettling = True)
17-03-17 18:21:55.538 -07 000000610 INF: Z Motor: Moving to -0.169325 mm, started at -0.176047 mm, distance = 6.72 um
17-03-17 18:21:55.538 -07 000000610 INF: FPGA: Xmit ZDACW 36989\n [Z Motor]
17-03-17 18:21:55.538 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:21:55.548 -07 000000610 INF: FPGA: 'ZDACW 36989' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:21:55.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:55.548 -07 000000608 INF: FPGA: Recv ZDACR 36989
17-03-17 18:21:55.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35650
17-03-17 18:21:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.718 -07 000000547 INF: FPGA: Recv ZSGSRD 35644
17-03-17 18:21:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.728 -07 000000547 INF: FPGA: Recv ZSGSRD 35651
17-03-17 18:21:55.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.738 -07 000000382 INF: FPGA: Recv ZSGSRD 35649
17-03-17 18:21:55.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.748 -07 000000382 INF: FPGA: Recv ZSGSRD 35646
17-03-17 18:21:55.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.758 -07 000000382 INF: FPGA: Recv ZSGSRD 35650
17-03-17 18:21:55.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.768 -07 000000608 INF: FPGA: Recv ZSGSRD 35649
17-03-17 18:21:55.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.778 -07 000000547 INF: FPGA: Recv ZSGSRD 35651
17-03-17 18:21:55.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.788 -07 000000608 INF: FPGA: Recv ZSGSRD 35647
17-03-17 18:21:55.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:55.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35645
17-03-17 18:21:55.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:55.808 -07 000000608 INF: FPGA: Recv ZPIEZORD 31511
17-03-17 18:21:55.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:55.818 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.1 V.
17-03-17 18:21:55.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35648 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35649 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35644 (-168.4 uncal um), Max = 35651 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:21:55.818 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35648, posNoise = 3, negNoise = 4
17-03-17 18:21:55.818 -07 000000610 INF: Z Motor: After move to -0.169325, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:55.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:21:55.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:55.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:55.818 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:55.818 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:55.818 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:55.818 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:55.818 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:55.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:55.818 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:21:55.818 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:55.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:55.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:55.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:21:55.828 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:55.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:21:55.828 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:55.838 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:21:55.838 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:55.838 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:55.838 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:55.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37165 150\n [Camera]
17-03-17 18:21:56.038 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:56.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:56.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:56.428 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:56.428 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:56.428 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:21:56.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:56.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:56.438 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:56.438 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:56.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:21:56.588 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:21:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:21:56.618 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37165 777
17-03-17 18:21:56.768 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:21:56.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:21:56.808 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:21:56.808 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:56.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:21:56.808 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:21:56.808 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:56.818 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:56.818 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:21:56.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:21:56.818 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:21:56.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:21:56.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:21:56.968 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:56.968 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:56.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:21:56.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:21:56.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:21:56.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:56.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:56.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:21:57.118 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.020806,
17-03-17 18:21:57.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:21:57.148 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:21:57.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37165 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 18:21:57.158 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170024
17-03-17 18:21:57.158 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17002 mm
17-03-17 18:21:57.158 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:21:57.158 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:21:57.158 -07 000000448 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 18:21:57.158 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:57.158 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37142, sync = True, waitForSettling = False)
17-03-17 18:21:57.158 -07 000000512 INF: Z Motor: Moving to -0.170025 mm, started at -0.169334 mm, distance = -0.69 um
17-03-17 18:21:57.158 -07 000000608 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:21:57.168 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:21:57.168 -07 000000448 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:57.168 -07 000000448 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:21:57.168 -07 000000448 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:21:57.168 -07 000000512 INF: FPGA: Xmit ZDACW 37142\n [Z Motor]
17-03-17 18:21:57.168 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:21:57.178 -07 000000512 INF: FPGA: 'ZDACW 37142' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:21:57.178 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:57.178 -07 000000623 INF: FPGA: Recv ZDACR 37142
17-03-17 18:21:57.188 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:21:57.188 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:57.188 -07 000000512 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 18:21:57.358 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:21:57.358 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:21:57.358 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:57.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:21:57.358 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:21:57.358 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:21:57.368 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:21:57.368 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:21:57.368 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:21:57.378 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:21:57.558 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:21:57.558 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 243 ms to get response, and 398 ms overall
17-03-17 18:21:57.598 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:57.598 -07 000000547 INF: FPGA: Recv YRDPOS 137977
17-03-17 18:21:57.608 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:21:57.608 -07 000000448 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:57.608 -07 000000448 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 18:21:57.608 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-17 18:21:58.558 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:21:58.558 -07 000000475 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:21:58.568 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:58.568 -07 000000448 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:21:58.588 -07 000000448 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:21:58.588 -07 000000448 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:21:58.588 -07 000000448 INF: Y Motor: Moved to 67.3721 after 1425 ms (table move)
17-03-17 18:21:58.588 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170025 mm (DAC = 37142)
17-03-17 18:21:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.588 -07 000000438 INF: FPGA: Recv ZSGSRD 35750
17-03-17 18:21:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:21:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.598 -07 000000382 INF: FPGA: Recv ZSGSRD 35749
17-03-17 18:21:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.608 -07 000000475 INF: FPGA: Recv ZSGSRD 35761
17-03-17 18:21:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35759
17-03-17 18:21:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.628 -07 000000512 INF: FPGA: Recv ZSGSRD 35762
17-03-17 18:21:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.638 -07 000000448 INF: FPGA: Recv ZSGSRD 35762
17-03-17 18:21:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.648 -07 000000462 INF: FPGA: Recv ZSGSRD 35760
17-03-17 18:21:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.658 -07 000000623 INF: FPGA: Recv ZSGSRD 35757
17-03-17 18:21:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35749
17-03-17 18:21:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.678 -07 000000512 INF: FPGA: Recv ZSGSRD 35754
17-03-17 18:21:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:58.688 -07 000000623 INF: FPGA: Recv ZPIEZORD 31641
17-03-17 18:21:58.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.698 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.1 V.
17-03-17 18:21:58.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35756 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35758 (-169.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35749 (-169.1 uncal um), Max = 35762 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:21:58.698 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35756, posNoise = 6, negNoise = 7
17-03-17 18:21:58.698 -07 000000610 INF: Z Motor: After move to -0.170025, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:58.698 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 105 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:21:58.698 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:21:58.748 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:21:58.748 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:21:58.748 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.17002748135194. ----------
17-03-17 18:21:58.748 -07 000000610 INF: Cycle	12	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:21:58.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36965, sync = True, waitForSettling = True)
17-03-17 18:21:58.748 -07 000000610 INF: Z Motor: Moving to -0.169215 mm, started at -0.170027 mm, distance = 0.81 um
17-03-17 18:21:58.748 -07 000000610 INF: FPGA: Xmit ZDACW 36965\n [Z Motor]
17-03-17 18:21:58.758 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:21:58.758 -07 000000610 INF: FPGA: 'ZDACW 36965' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:21:58.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:21:58.758 -07 000000512 INF: FPGA: Recv ZDACR 36965
17-03-17 18:21:58.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:21:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35631
17-03-17 18:21:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:21:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.928 -07 000000608 INF: FPGA: Recv ZSGSRD 35634
17-03-17 18:21:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.938 -07 000000475 INF: FPGA: Recv ZSGSRD 35625
17-03-17 18:21:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.948 -07 000000512 INF: FPGA: Recv ZSGSRD 35631
17-03-17 18:21:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.958 -07 000000608 INF: FPGA: Recv ZSGSRD 35633
17-03-17 18:21:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.968 -07 000000448 INF: FPGA: Recv ZSGSRD 35636
17-03-17 18:21:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35634
17-03-17 18:21:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.988 -07 000000608 INF: FPGA: Recv ZSGSRD 35624
17-03-17 18:21:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:58.998 -07 000000448 INF: FPGA: Recv ZSGSRD 35629
17-03-17 18:21:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:21:59.008 -07 000000475 INF: FPGA: Recv ZSGSRD 35628
17-03-17 18:21:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:59.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:21:59.018 -07 000000623 INF: FPGA: Recv ZPIEZORD 31481
17-03-17 18:21:59.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:21:59.028 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -9.2 V.
17-03-17 18:21:59.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35630 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35631 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35624 (-168.3 uncal um), Max = 35636 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:21:59.028 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35630, posNoise = 6, negNoise = 6
17-03-17 18:21:59.028 -07 000000610 INF: Z Motor: After move to -0.169215, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:21:59.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:21:59.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:21:59.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:21:59.028 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:21:59.028 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:21:59.028 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:21:59.028 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:21:59.038 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:21:59.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:21:59.038 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:21:59.038 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:21:59.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:21:59.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:21:59.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:21:59.038 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:21:59.038 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:21:59.038 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:21:59.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:21:59.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:21:59.048 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:21:59.048 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:21:59.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37142 150\n [Camera]
17-03-17 18:21:59.248 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:21:59.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:21:59.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:21:59.648 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:21:59.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:21:59.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:21:59.648 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:21:59.648 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:21:59.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 18:21:59.658 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:21:59.658 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:21:59.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37142 777
17-03-17 18:21:59.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:00.028 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:22:00.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:22:00.028 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:00.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:22:00.028 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:22:00.028 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:00.028 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:22:00.028 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:22:00.038 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:00.048 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:22:00.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:00.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:00.178 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:00.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:00.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:00.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:00.178 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:00.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:22:00.178 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:00.178 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:00.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:00.368 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:00.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37142 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-17 18:22:00.368 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169154
17-03-17 18:22:00.368 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16915 mm
17-03-17 18:22:00.368 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:00.368 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:22:00.368 -07 000000448 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 18:22:00.368 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36952, sync = True, waitForSettling = False)
17-03-17 18:22:00.368 -07 000000608 INF: Z Motor: Moving to -0.169155 mm, started at -0.169218 mm, distance = 0.06 um
17-03-17 18:22:00.368 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:00.378 -07 000000608 INF: FPGA: Xmit ZDACW 36952\n [Z Motor]
17-03-17 18:22:00.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:22:00.558 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:22:00.558 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:00.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:22:00.558 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:22:00.558 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:00.558 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:00.558 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:00.558 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:22:00.568 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:22:00.568 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:22:00.568 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:22:00.568 -07 000000608 INF: FPGA: 'ZDACW 36952' command took 0 ms to send, 186 ms to get response, and 200 ms overall
17-03-17 18:22:00.568 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:00.568 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 196 ms to get response, and 200 ms overall
17-03-17 18:22:00.568 -07 000000448 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:00.568 -07 000000448 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:00.568 -07 000000448 INF: Y Motor: Moving 1345 steps-23
17-03-17 18:22:00.568 -07 000000382 INF: FPGA: Recv ZDACR 36952
17-03-17 18:22:00.578 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:22:00.578 -07 000000608 INF: Z Motor: MoveAbsStepped took 203 ms (did NOT wait for settling yet))
17-03-17 18:22:00.578 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:00.948 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:22:00.948 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 18:22:00.988 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:00.988 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-17 18:22:00.998 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:22:00.998 -07 000000448 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:00.998 -07 000000448 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:22:00.998 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.841 mm, average velocity = 2.218 mm/sec
17-03-17 18:22:01.588 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:01.948 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:01.948 -07 000000476 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:22:01.958 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:01.958 -07 000000448 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:01.978 -07 000000448 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:01.978 -07 000000448 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:22:01.978 -07 000000448 INF: Y Motor: Moved to 68.2051 after 1605 ms (table move)
17-03-17 18:22:01.978 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169155 mm (DAC = 36952)
17-03-17 18:22:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:01.978 -07 000000593 INF: FPGA: Recv ZSGSRD 35627
17-03-17 18:22:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:01.988 -07 000000476 INF: FPGA: Recv ZSGSRD 35620
17-03-17 18:22:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:01.998 -07 000000608 INF: FPGA: Recv ZSGSRD 35632
17-03-17 18:22:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.008 -07 000000569 INF: FPGA: Recv ZSGSRD 35623
17-03-17 18:22:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.018 -07 000000448 INF: FPGA: Recv ZSGSRD 35622
17-03-17 18:22:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.028 -07 000000608 INF: FPGA: Recv ZSGSRD 35622
17-03-17 18:22:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35616
17-03-17 18:22:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35621
17-03-17 18:22:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.058 -07 000000475 INF: FPGA: Recv ZSGSRD 35617
17-03-17 18:22:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35626
17-03-17 18:22:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:02.078 -07 000000569 INF: FPGA: Recv ZPIEZORD 31498
17-03-17 18:22:02.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.088 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.1 V.
17-03-17 18:22:02.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35623 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35622 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35616 (-168.3 uncal um), Max = 35632 (-168.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:02.088 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35623, posNoise = 9, negNoise = 7
17-03-17 18:22:02.088 -07 000000610 INF: Z Motor: After move to -0.169155, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:02.088 -07 000000610 INF: Z Motor: Settle wait time = 1607 ms, measure time = 107 ms (allowed 150 ms), total time = 1714 ms
17-03-17 18:22:02.088 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:02.138 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1765 ms
17-03-17 18:22:02.138 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:02.138 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.169173061137086. ----------
17-03-17 18:22:02.138 -07 000000610 INF: Cycle	12	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:02.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36775, sync = True, waitForSettling = True)
17-03-17 18:22:02.138 -07 000000610 INF: Z Motor: Moving to -0.168345 mm, started at -0.169173 mm, distance = 0.83 um
17-03-17 18:22:02.138 -07 000000610 INF: FPGA: Xmit ZDACW 36775\n [Z Motor]
17-03-17 18:22:02.148 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:22:02.148 -07 000000610 INF: FPGA: 'ZDACW 36775' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 18:22:02.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:02.148 -07 000000382 INF: FPGA: Recv ZDACR 36775
17-03-17 18:22:02.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:02.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.308 -07 000000476 INF: FPGA: Recv ZSGSRD 35493
17-03-17 18:22:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:02.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35502
17-03-17 18:22:02.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.328 -07 000000448 INF: FPGA: Recv ZSGSRD 35497
17-03-17 18:22:02.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.338 -07 000000608 INF: FPGA: Recv ZSGSRD 35497
17-03-17 18:22:02.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.348 -07 000000448 INF: FPGA: Recv ZSGSRD 35499
17-03-17 18:22:02.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.358 -07 000000608 INF: FPGA: Recv ZSGSRD 35492
17-03-17 18:22:02.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.368 -07 000000593 INF: FPGA: Recv ZSGSRD 35498
17-03-17 18:22:02.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.378 -07 000000382 INF: FPGA: Recv ZSGSRD 35492
17-03-17 18:22:02.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35494
17-03-17 18:22:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:02.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35500
17-03-17 18:22:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:02.408 -07 000000448 INF: FPGA: Recv ZPIEZORD 31301
17-03-17 18:22:02.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:02.418 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.2 V.
17-03-17 18:22:02.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35496 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35497 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35492 (-167.5 uncal um), Max = 35502 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:22:02.418 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35496, posNoise = 6, negNoise = 4
17-03-17 18:22:02.418 -07 000000610 INF: Z Motor: After move to -0.168345, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:02.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:22:02.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:02.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:02.418 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:02.418 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:02.418 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:02.418 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:02.418 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:02.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:22:02.428 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:02.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:02.428 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:02.428 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:02.428 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:02.428 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:02.428 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:22:02.428 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:02.438 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:22:02.438 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:22:02.438 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:22:02.438 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:02.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36952 150\n [Camera]
17-03-17 18:22:02.478 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.016692,
17-03-17 18:22:02.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:03.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:03.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:03.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:03.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:03.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:22:03.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:03.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:03.038 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:03.148 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:03.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:22:03.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36952 777
17-03-17 18:22:03.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:03.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:22:03.408 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:22:03.408 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:03.418 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:03.418 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:22:03.518 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:22:03.518 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:22:03.518 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:03.528 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:03.528 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 18:22:03.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:22:03.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:22:03.568 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:03.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:22:03.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:22:03.568 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:03.568 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:03.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:22:03.578 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:03.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:22:03.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:22:03.758 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:03.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36952 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-17 18:22:03.758 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168913
17-03-17 18:22:03.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16891 mm
17-03-17 18:22:03.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:03.758 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:22:03.758 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 18:22:03.758 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:03.948 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:22:03.948 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:22:03.948 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:03.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:22:03.948 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:22:03.948 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:03.948 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:03.948 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:22:03.958 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:03.958 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:22:03.968 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 36899, sync = True, waitForSettling = False)
17-03-17 18:22:03.968 -07 000000593 INF: Z Motor: Moving to -0.168913 mm, started at -0.168357 mm, distance = -0.56 um
17-03-17 18:22:03.968 -07 000000593 INF: FPGA: Xmit ZDACW 36899\n [Z Motor]
17-03-17 18:22:03.968 -07 000000429 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:22:03.968 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:22:03.968 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 210 ms overall
17-03-17 18:22:03.968 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:03.968 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:03.968 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:22:03.978 -07 000000593 INF: FPGA: 'ZDACW 36899' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:03.978 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:03.988 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:03.988 -07 000000429 INF: FPGA: Recv ZDACR 36899
17-03-17 18:22:03.998 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:03.998 -07 000000593 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 18:22:04.348 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:22:04.348 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 18:22:04.388 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:04.388 -07 000000593 INF: FPGA: Recv YRDPOS 141367
17-03-17 18:22:04.398 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:04.398 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:04.398 -07 000000569 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:22:04.398 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.210 mm/sec
17-03-17 18:22:05.348 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:05.348 -07 000000429 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:22:05.358 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:05.358 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:05.388 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:05.388 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:22:05.388 -07 000000569 INF: Y Motor: Moved to 69.0273 after 1625 ms (table move)
17-03-17 18:22:05.388 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168913 mm (DAC = 36899)
17-03-17 18:22:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.388 -07 000000429 INF: FPGA: Recv ZSGSRD 35585
17-03-17 18:22:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.398 -07 000000593 INF: FPGA: Recv ZSGSRD 35592
17-03-17 18:22:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35582
17-03-17 18:22:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.418 -07 000000569 INF: FPGA: Recv ZSGSRD 35582
17-03-17 18:22:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.428 -07 000000623 INF: FPGA: Recv ZSGSRD 35586
17-03-17 18:22:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.438 -07 000000569 INF: FPGA: Recv ZSGSRD 35582
17-03-17 18:22:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.448 -07 000000623 INF: FPGA: Recv ZSGSRD 35582
17-03-17 18:22:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35573
17-03-17 18:22:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.468 -07 000000623 INF: FPGA: Recv ZSGSRD 35586
17-03-17 18:22:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35591
17-03-17 18:22:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:05.488 -07 000000569 INF: FPGA: Recv ZPIEZORD 31475
17-03-17 18:22:05.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.498 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.1 V.
17-03-17 18:22:05.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35584 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35584 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35573 (-168.0 uncal um), Max = 35592 (-168.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:22:05.498 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35584, posNoise = 8, negNoise = 11
17-03-17 18:22:05.498 -07 000000610 INF: Z Motor: After move to -0.168913, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:05.498 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 106 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:22:05.498 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:05.548 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1785 ms
17-03-17 18:22:05.548 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:05.548 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.168922516863557. ----------
17-03-17 18:22:05.548 -07 000000610 INF: Cycle	12	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:05.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36722, sync = True, waitForSettling = True)
17-03-17 18:22:05.548 -07 000000610 INF: Z Motor: Moving to -0.168103 mm, started at -0.168923 mm, distance = 0.82 um
17-03-17 18:22:05.558 -07 000000610 INF: FPGA: Xmit ZDACW 36722\n [Z Motor]
17-03-17 18:22:05.558 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:22:05.568 -07 000000610 INF: FPGA: 'ZDACW 36722' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:22:05.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:05.588 -07 000000429 INF: FPGA: Recv ZDACR 36722
17-03-17 18:22:05.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:05.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:05.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.748 -07 000000623 INF: FPGA: Recv ZSGSRD 35464
17-03-17 18:22:05.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.758 -07 000000569 INF: FPGA: Recv ZSGSRD 35464
17-03-17 18:22:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.768 -07 000000623 INF: FPGA: Recv ZSGSRD 35452
17-03-17 18:22:05.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35461
17-03-17 18:22:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.788 -07 000000623 INF: FPGA: Recv ZSGSRD 35457
17-03-17 18:22:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.798 -07 000000569 INF: FPGA: Recv ZSGSRD 35469
17-03-17 18:22:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.808 -07 000000623 INF: FPGA: Recv ZSGSRD 35458
17-03-17 18:22:05.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.818 -07 000000569 INF: FPGA: Recv ZSGSRD 35453
17-03-17 18:22:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.828 -07 000000623 INF: FPGA: Recv ZSGSRD 35461
17-03-17 18:22:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:05.838 -07 000000429 INF: FPGA: Recv ZSGSRD 35456
17-03-17 18:22:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:05.848 -07 000000623 INF: FPGA: Recv ZPIEZORD 31297
17-03-17 18:22:05.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:05.858 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.2 V.
17-03-17 18:22:05.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35460 (-167.3 uncal um), Error = 0.8 uncal um, Median = 35460 (-167.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35452 (-167.2 uncal um), Max = 35469 (-167.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:22:05.858 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35460, posNoise = 9, negNoise = 8
17-03-17 18:22:05.858 -07 000000610 INF: Z Motor: After move to -0.168103, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:05.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 305 ms)
17-03-17 18:22:05.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:05.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:05.858 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:05.858 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:05.858 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:05.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:05.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:22:05.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:05.858 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:05.858 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:05.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:05.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:05.868 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:22:05.868 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:05.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:05.868 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:05.868 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:22:05.868 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:22:05.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:22:05.878 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:22:05.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36899 150\n [Camera]
17-03-17 18:22:06.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:06.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:06.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:06.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:06.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:06.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:06.478 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:06.478 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:06.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:22:06.488 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:06.488 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:22:06.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:06.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:06.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36899 780
17-03-17 18:22:06.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:06.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:22:06.858 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:22:06.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:06.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:22:06.858 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:22:06.858 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:06.858 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:06.858 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:22:06.858 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:06.868 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:22:06.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:06.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:06.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:06.998 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:06.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1124240600, 0x0, 391868352) start.
17-03-17 18:22:07.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:07.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:07.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:07.128 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:07.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:22:07.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:07.188 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:07.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36899 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 18:22:07.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:07.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168125914557978. ------
17-03-17 18:22:07.198 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:07.198 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17448 mm
17-03-17 18:22:07.198 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:07.198 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:07.208 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:07.208 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:07.208 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:22:07.208 -07 000000438 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 18:22:07.208 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38114, sync = True, waitForSettling = False)
17-03-17 18:22:07.208 -07 000000462 INF: Z Motor: Moving to -0.174475 mm, started at -0.168126 mm, distance = -6.35 um
17-03-17 18:22:07.218 -07 000000462 INF: FPGA: Xmit ZDACW 38114\n [Z Motor]
17-03-17 18:22:07.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:07.388 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1124240600, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:22:07.388 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:22:07.388 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:07.388 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:07.388 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:22:07.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:22:07.508 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:22:07.508 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:07.508 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:22:07.508 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 18:22:08.248 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:22:08.248 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:22:08.248 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:08.248 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1030 ms to get response, and 1040 ms overall
17-03-17 18:22:08.248 -07 000000462 INF: FPGA: 'ZDACW 38114' command took 0 ms to send, 1020 ms to get response, and 1039 ms overall
17-03-17 18:22:08.248 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:08.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1010 ms to get response, and 1039 ms overall
17-03-17 18:22:08.248 -07 000000438 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:08.248 -07 000000438 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:08.248 -07 000000438 INF: Y Motor: Moving 1352 steps-32
17-03-17 18:22:08.248 -07 000000476 INF: FPGA: Recv ZDACR 38114
17-03-17 18:22:08.258 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:08.258 -07 000000462 INF: Z Motor: MoveAbsStepped took 1049 ms (did NOT wait for settling yet))
17-03-17 18:22:08.258 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:08.558 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.979922,
17-03-17 18:22:08.628 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:22:08.628 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 18:22:08.678 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:08.678 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:22:08.688 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:08.688 -07 000000438 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:08.688 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:22:08.688 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.190 mm/sec
17-03-17 18:22:09.638 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:09.638 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:22:09.648 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:09.648 -07 000000438 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:09.678 -07 000000438 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:09.678 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:09.678 -07 000000438 INF: Y Motor: Moved to 69.8633 after 2470 ms (table move)
17-03-17 18:22:09.678 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174475 mm (DAC = 38114)
17-03-17 18:22:09.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.678 -07 000000382 INF: FPGA: Recv ZSGSRD 36459
17-03-17 18:22:09.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:09.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.688 -07 000000462 INF: FPGA: Recv ZSGSRD 36457
17-03-17 18:22:09.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.698 -07 000000593 INF: FPGA: Recv ZSGSRD 36452
17-03-17 18:22:09.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.708 -07 000000462 INF: FPGA: Recv ZSGSRD 36443
17-03-17 18:22:09.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36447
17-03-17 18:22:09.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.728 -07 000000438 INF: FPGA: Recv ZSGSRD 36449
17-03-17 18:22:09.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.738 -07 000000593 INF: FPGA: Recv ZSGSRD 36449
17-03-17 18:22:09.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.748 -07 000000438 INF: FPGA: Recv ZSGSRD 36448
17-03-17 18:22:09.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.758 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.758 -07 000000476 INF: FPGA: Recv ZSGSRD 36451
17-03-17 18:22:09.768 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.768 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:09.768 -07 000000438 INF: FPGA: Recv ZSGSRD 36456
17-03-17 18:22:09.778 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.778 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:09.778 -07 000000608 INF: FPGA: Recv ZPIEZORD 32619
17-03-17 18:22:09.788 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:09.788 -07 000000429 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.5 V.
17-03-17 18:22:09.788 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36451 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36450 (-173.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36443 (-173.6 uncal um), Max = 36459 (-173.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:22:09.788 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36451, posNoise = 8, negNoise = 8
17-03-17 18:22:09.788 -07 000000429 INF: Z Motor: After move to -0.174475, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:09.788 -07 000000429 INF: Z Motor: Settle wait time = 2473 ms, measure time = 106 ms (allowed 150 ms), total time = 2579 ms
17-03-17 18:22:09.788 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:09.838 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2634 ms
17-03-17 18:22:09.838 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:09.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:09.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:09.838 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:09.838 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:09.838 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:09.838 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:09.838 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:09.838 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:09.848 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:09.848 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:09.848 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:22:09.848 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:22:09.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:09.898 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:10.098 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:10.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:10.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:10.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:22:10.138 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:10.138 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:10.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:22:10.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:22:10.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:10.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:10.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:22:10.238 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:10.238 -07 000000608 INF: Autofocus start
17-03-17 18:22:10.238 -07 000000608 INF: MeasureProfile start
17-03-17 18:22:10.238 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:10.248 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:10.248 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:10.258 -07 000000608 INF: MeasureProfile done
17-03-17 18:22:10.258 -07 000000608 INF: X=112  Z correction [um]=0.5011052
17-03-17 18:22:10.258 -07 000000608 INF: Autofocus finished
17-03-17 18:22:10.448 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:10.448 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:22:10.448 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 18:22:10.458 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174492308790464. ----------
17-03-17 18:22:10.458 -07 000000610 INF: Cycle	12	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:10.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36736, sync = True, waitForSettling = True)
17-03-17 18:22:10.458 -07 000000610 INF: Z Motor: Moving to -0.168167 mm, started at -0.174492 mm, distance = 6.33 um
17-03-17 18:22:10.458 -07 000000610 INF: FPGA: Xmit ZDACW 36736\n [Z Motor]
17-03-17 18:22:10.458 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:22:10.468 -07 000000610 INF: FPGA: 'ZDACW 36736' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:10.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:10.468 -07 000000475 INF: FPGA: Recv ZDACR 36736
17-03-17 18:22:10.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:10.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.628 -07 000000429 INF: FPGA: Recv ZSGSRD 35466
17-03-17 18:22:10.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:10.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.638 -07 000000608 INF: FPGA: Recv ZSGSRD 35467
17-03-17 18:22:10.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.648 -07 000000476 INF: FPGA: Recv ZSGSRD 35468
17-03-17 18:22:10.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.658 -07 000000476 INF: FPGA: Recv ZSGSRD 35468
17-03-17 18:22:10.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35470
17-03-17 18:22:10.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.678 -07 000000382 INF: FPGA: Recv ZSGSRD 35469
17-03-17 18:22:10.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35470
17-03-17 18:22:10.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.698 -07 000000382 INF: FPGA: Recv ZSGSRD 35468
17-03-17 18:22:10.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.708 -07 000000382 INF: FPGA: Recv ZSGSRD 35465
17-03-17 18:22:10.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:10.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35467
17-03-17 18:22:10.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:10.728 -07 000000382 INF: FPGA: Recv ZPIEZORD 31281
17-03-17 18:22:10.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:10.738 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.2 V.
17-03-17 18:22:10.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35468 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35465 (-167.3 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:22:10.738 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35468, posNoise = 2, negNoise = 3
17-03-17 18:22:10.738 -07 000000610 INF: Z Motor: After move to -0.168167, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:10.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:22:10.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:10.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:10.738 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:10.738 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:10.738 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:10.738 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:10.738 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:10.738 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:10.738 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:10.738 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:10.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:22:10.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:10.748 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:10.748 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:10.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:10.748 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:10.758 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:22:10.758 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:10.758 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:22:10.758 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:22:10.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36913 150\n [Camera]
17-03-17 18:22:10.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:11.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:11.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:11.358 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:11.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:11.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:11.358 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:11.358 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:11.358 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:11.358 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:11.358 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:11.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36913 777
17-03-17 18:22:11.588 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:11.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:11.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:11.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:22:11.728 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:22:11.728 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:11.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:22:11.728 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:22:11.738 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:11.738 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:11.738 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:11.738 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:22:11.748 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:22:11.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:11.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:11.888 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:11.888 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:11.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:22:11.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:11.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:11.888 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:11.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:11.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:22:12.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:12.078 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:12.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36913 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-17 18:22:12.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:12.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168177308255113. ------
17-03-17 18:22:12.078 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:12.078 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17462 mm
17-03-17 18:22:12.078 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:12.208 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:12.208 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 18:22:12.208 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:22:12.208 -07 000000438 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 18:22:12.208 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38145, sync = True, waitForSettling = False)
17-03-17 18:22:12.208 -07 000000448 INF: Z Motor: Moving to -0.174617 mm, started at -0.168177 mm, distance = -6.44 um
17-03-17 18:22:12.208 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:12.218 -07 000000448 INF: FPGA: Xmit ZDACW 38145\n [Z Motor]
17-03-17 18:22:12.218 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:22:12.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:12.228 -07 000000448 INF: FPGA: 'ZDACW 38145' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:22:12.228 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:22:12.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:22:12.238 -07 000000438 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:12.238 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:12.238 -07 000000478 INF: FPGA: Recv ZDACR 38145
17-03-17 18:22:12.238 -07 000000438 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:12.238 -07 000000438 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:22:12.248 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:12.248 -07 000000448 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:22:12.248 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:12.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:22:12.268 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:22:12.268 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:12.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:22:12.268 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:22:12.268 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:12.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:12.278 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:22:12.278 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:22:12.288 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:22:12.408 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:12.408 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 18:22:12.618 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:22:12.618 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 18:22:12.658 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:12.668 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:22:12.668 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 18:22:12.668 -07 000000438 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:12.668 -07 000000438 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:22:12.668 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.180 mm/sec
17-03-17 18:22:13.618 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:13.618 -07 000000547 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:22:13.628 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:13.628 -07 000000438 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:13.658 -07 000000438 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:13.658 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:13.658 -07 000000438 INF: Y Motor: Moved to 70.6885 after 1449 ms (table move)
17-03-17 18:22:13.658 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174617 mm (DAC = 38145)
17-03-17 18:22:13.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.668 -07 000000475 INF: FPGA: Recv ZSGSRD 36475
17-03-17 18:22:13.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:22:13.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.668 -07 000000438 INF: FPGA: Recv ZSGSRD 36470
17-03-17 18:22:13.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:13.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36479
17-03-17 18:22:13.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.688 -07 000000438 INF: FPGA: Recv ZSGSRD 36470
17-03-17 18:22:13.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.698 -07 000000475 INF: FPGA: Recv ZSGSRD 36466
17-03-17 18:22:13.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.708 -07 000000476 INF: FPGA: Recv ZSGSRD 36473
17-03-17 18:22:13.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.718 -07 000000569 INF: FPGA: Recv ZSGSRD 36469
17-03-17 18:22:13.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.728 -07 000000438 INF: FPGA: Recv ZSGSRD 36471
17-03-17 18:22:13.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.738 -07 000000475 INF: FPGA: Recv ZSGSRD 36472
17-03-17 18:22:13.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:13.748 -07 000000438 INF: FPGA: Recv ZSGSRD 36467
17-03-17 18:22:13.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.758 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:13.758 -07 000000547 INF: FPGA: Recv ZPIEZORD 32629
17-03-17 18:22:13.768 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:13.768 -07 000000382 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.5 V.
17-03-17 18:22:13.768 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36471 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36470 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36466 (-173.7 uncal um), Max = 36479 (-173.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:22:13.768 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36471, posNoise = 8, negNoise = 5
17-03-17 18:22:13.768 -07 000000382 INF: Z Motor: After move to -0.174617, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:13.768 -07 000000382 INF: Z Motor: Settle wait time = 1454 ms, measure time = 103 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:22:13.768 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:13.818 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-17 18:22:13.818 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:13.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:13.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:13.818 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:13.818 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:13.818 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:13.818 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:13.818 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:13.818 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:13.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:13.828 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:13.828 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:22:13.828 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:22:13.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:13.878 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:13.918 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.988112,
17-03-17 18:22:14.078 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:14.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:14.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:14.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:14.118 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:14.118 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:14.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:22:14.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:22:14.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:14.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:14.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:22:14.218 -07 000000593 INF: Autofocus start
17-03-17 18:22:14.218 -07 000000593 INF: MeasureProfile start
17-03-17 18:22:14.218 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:14.218 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:14.228 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:14.228 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:14.238 -07 000000593 INF: MeasureProfile done
17-03-17 18:22:14.238 -07 000000593 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:22:14.238 -07 000000593 INF: Autofocus finished
17-03-17 18:22:14.428 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:14.428 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:14.428 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174620793033299. ----------
17-03-17 18:22:14.438 -07 000000610 INF: Cycle	12	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:14.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36625, sync = True, waitForSettling = True)
17-03-17 18:22:14.438 -07 000000610 INF: Z Motor: Moving to -0.167659 mm, started at -0.174621 mm, distance = 6.96 um
17-03-17 18:22:14.438 -07 000000610 INF: FPGA: Xmit ZDACW 36625\n [Z Motor]
17-03-17 18:22:14.438 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:22:14.448 -07 000000610 INF: FPGA: 'ZDACW 36625' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:22:14.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:14.448 -07 000000476 INF: FPGA: Recv ZDACR 36625
17-03-17 18:22:14.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.608 -07 000000593 INF: FPGA: Recv ZSGSRD 35391
17-03-17 18:22:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.618 -07 000000438 INF: FPGA: Recv ZSGSRD 35387
17-03-17 18:22:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.628 -07 000000547 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:22:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.638 -07 000000593 INF: FPGA: Recv ZSGSRD 35386
17-03-17 18:22:14.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.648 -07 000000476 INF: FPGA: Recv ZSGSRD 35387
17-03-17 18:22:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.658 -07 000000475 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:22:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.668 -07 000000476 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:22:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:14.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.678 -07 000000569 INF: FPGA: Recv ZSGSRD 35393
17-03-17 18:22:14.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.688 -07 000000547 INF: FPGA: Recv ZSGSRD 35387
17-03-17 18:22:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:14.698 -07 000000475 INF: FPGA: Recv ZSGSRD 35393
17-03-17 18:22:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:14.708 -07 000000547 INF: FPGA: Recv ZPIEZORD 31191
17-03-17 18:22:14.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:14.718 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.3 V.
17-03-17 18:22:14.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35389 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35388 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35385 (-166.8 uncal um), Max = 35393 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:22:14.718 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35389, posNoise = 4, negNoise = 4
17-03-17 18:22:14.718 -07 000000610 INF: Z Motor: After move to -0.167659, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:14.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:22:14.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:14.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:14.718 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:14.718 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:14.718 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:14.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:14.718 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:14.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:14.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:14.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:14.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:22:14.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:14.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:14.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:14.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:14.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:14.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:22:14.728 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:22:14.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:22:14.728 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:14.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36802 150\n [Camera]
17-03-17 18:22:14.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:15.328 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:15.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:15.328 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:15.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:15.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:15.328 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:15.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:15.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:15.338 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:15.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:22:15.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36802 777
17-03-17 18:22:15.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:15.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:22:15.708 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:22:15.708 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:15.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:15.718 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:15.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:22:15.718 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:22:15.718 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:15.718 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:15.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:22:15.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:15.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:15.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:15.858 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:15.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:15.868 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:15.868 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:15.868 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:22:15.868 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:15.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:22:16.048 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:22:16.048 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:16.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36802 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:22:16.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:16.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167669795495913. ------
17-03-17 18:22:16.058 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17437 mm
17-03-17 18:22:16.058 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:16.058 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:16.058 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:22:16.058 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 18:22:16.058 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38091, sync = True, waitForSettling = False)
17-03-17 18:22:16.068 -07 000000438 INF: Z Motor: Moving to -0.174369 mm, started at -0.167670 mm, distance = -6.70 um
17-03-17 18:22:16.068 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:16.068 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:16.068 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 18:22:16.068 -07 000000476 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:22:16.078 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:16.078 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:16.078 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:16.078 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-17 18:22:16.078 -07 000000438 INF: FPGA: Xmit ZDACW 38091\n [Z Motor]
17-03-17 18:22:16.078 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:22:16.088 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:16.088 -07 000000438 INF: FPGA: 'ZDACW 38091' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:16.098 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:16.108 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:16.108 -07 000000623 INF: FPGA: Recv ZDACR 38091
17-03-17 18:22:16.118 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:16.118 -07 000000438 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:22:16.238 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:22:16.238 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:22:16.238 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:16.248 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:16.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:22:16.248 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:22:16.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:16.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:16.248 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:22:16.258 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:22:16.288 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:16.288 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 18:22:16.468 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:22:16.468 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:22:16.508 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:16.508 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:22:16.518 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:22:16.518 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:16.518 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:22:16.518 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 18:22:16.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:16.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:17.468 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:17.468 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:22:17.478 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:17.478 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:17.498 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:17.498 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:17.498 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1433 ms (table move)
17-03-17 18:22:17.498 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174369 mm (DAC = 38091)
17-03-17 18:22:17.498 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.508 -07 000000512 INF: FPGA: Recv ZSGSRD 36441
17-03-17 18:22:17.508 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:22:17.508 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.508 -07 000000512 INF: FPGA: Recv ZSGSRD 36427
17-03-17 18:22:17.518 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.518 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.518 -07 000000512 INF: FPGA: Recv ZSGSRD 36427
17-03-17 18:22:17.528 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.528 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.528 -07 000000512 INF: FPGA: Recv ZSGSRD 36439
17-03-17 18:22:17.538 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.538 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.538 -07 000000512 INF: FPGA: Recv ZSGSRD 36431
17-03-17 18:22:17.548 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.548 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.548 -07 000000512 INF: FPGA: Recv ZSGSRD 36427
17-03-17 18:22:17.558 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.558 -07 000000512 INF: FPGA: Recv ZSGSRD 36437
17-03-17 18:22:17.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.568 -07 000000512 INF: FPGA: Recv ZSGSRD 36434
17-03-17 18:22:17.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.578 -07 000000512 INF: FPGA: Recv ZSGSRD 36433
17-03-17 18:22:17.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:17.588 -07 000000512 INF: FPGA: Recv ZSGSRD 36425
17-03-17 18:22:17.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.598 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:17.598 -07 000000512 INF: FPGA: Recv ZPIEZORD 32572
17-03-17 18:22:17.608 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:17.608 -07 000000569 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.5 V.
17-03-17 18:22:17.608 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36432 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36432 (-173.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36425 (-173.4 uncal um), Max = 36441 (-173.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:17.608 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36432, posNoise = 9, negNoise = 7
17-03-17 18:22:17.608 -07 000000569 INF: Z Motor: After move to -0.174369, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:17.608 -07 000000569 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:22:17.608 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:17.658 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:22:17.658 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:17.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:17.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:17.658 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:17.658 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:17.658 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:17.658 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:17.668 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:17.668 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:17.668 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:17.668 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:17.678 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:22:17.678 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:22:17.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:17.728 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:17.928 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:17.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:17.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:17.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:22:17.968 -07 000000448 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:22:17.968 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:17.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 18:22:18.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:22:18.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:18.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:22:18.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:22:18.068 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:18.068 -07 000000593 INF: Autofocus start
17-03-17 18:22:18.068 -07 000000593 INF: MeasureProfile start
17-03-17 18:22:18.068 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:18.078 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:18.078 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:18.088 -07 000000593 INF: MeasureProfile done
17-03-17 18:22:18.088 -07 000000593 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:22:18.088 -07 000000593 INF: Autofocus finished
17-03-17 18:22:18.278 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:18.278 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:18.278 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.17437024875977. ----------
17-03-17 18:22:18.288 -07 000000610 INF: Cycle	12	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:18.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36624, sync = True, waitForSettling = True)
17-03-17 18:22:18.288 -07 000000610 INF: Z Motor: Moving to -0.167654 mm, started at -0.174370 mm, distance = 6.72 um
17-03-17 18:22:18.288 -07 000000610 INF: FPGA: Xmit ZDACW 36624\n [Z Motor]
17-03-17 18:22:18.288 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:22:18.298 -07 000000610 INF: FPGA: 'ZDACW 36624' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:22:18.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:18.298 -07 000000623 INF: FPGA: Recv ZDACR 36624
17-03-17 18:22:18.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35390
17-03-17 18:22:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35383
17-03-17 18:22:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35392
17-03-17 18:22:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.488 -07 000000448 INF: FPGA: Recv ZSGSRD 35386
17-03-17 18:22:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.498 -07 000000438 INF: FPGA: Recv ZSGSRD 35390
17-03-17 18:22:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.508 -07 000000476 INF: FPGA: Recv ZSGSRD 35392
17-03-17 18:22:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.518 -07 000000448 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:22:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35391
17-03-17 18:22:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.538 -07 000000448 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:22:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:18.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35381
17-03-17 18:22:18.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:18.558 -07 000000382 INF: FPGA: Recv ZPIEZORD 31174
17-03-17 18:22:18.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:18.568 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -9.3 V.
17-03-17 18:22:18.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35388 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35389 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35381 (-166.7 uncal um), Max = 35392 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:18.568 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35388, posNoise = 4, negNoise = 7
17-03-17 18:22:18.568 -07 000000610 INF: Z Motor: After move to -0.167654, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:18.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:22:18.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:18.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:18.568 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:18.568 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:18.568 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:18.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:18.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:18.568 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:18.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:22:18.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:18.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:18.568 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:18.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:22:18.568 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:18.578 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:18.578 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:18.578 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:22:18.578 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:22:18.588 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:22:18.588 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:22:18.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36801 150\n [Camera]
17-03-17 18:22:18.788 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:19.178 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:19.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:19.178 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:19.178 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:19.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:22:19.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:19.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:19.188 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:19.188 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:19.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:22:19.278 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.026244,
17-03-17 18:22:19.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36801 777
17-03-17 18:22:19.518 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:19.558 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:22:19.558 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:22:19.558 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:19.558 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:22:19.558 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:22:19.558 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:19.568 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:19.568 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:22:19.568 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:19.568 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:22:19.708 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:19.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:19.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:19.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:19.718 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:19.718 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:19.718 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:22:19.718 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:19.718 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:19.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:22:19.898 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:19.908 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:19.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36801 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-17 18:22:19.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:19.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167663371283772. ------
17-03-17 18:22:19.908 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:19.908 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17360 mm
17-03-17 18:22:19.908 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:19.908 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:19.908 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:22:19.918 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 18:22:19.918 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:19.918 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:19.918 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37924, sync = True, waitForSettling = False)
17-03-17 18:22:19.918 -07 000000382 INF: Z Motor: Moving to -0.173605 mm, started at -0.167663 mm, distance = -5.94 um
17-03-17 18:22:19.918 -07 000000608 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:22:19.928 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:19.928 -07 000000512 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:20.038 -07 000000382 INF: FPGA: Xmit ZDACW 37924\n [Z Motor]
17-03-17 18:22:20.038 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:22:20.038 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:20.038 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:22:20.048 -07 000000382 INF: FPGA: 'ZDACW 37924' command took 116 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 18:22:20.048 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:20.058 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:20.058 -07 000000478 INF: FPGA: Recv ZDACR 37924
17-03-17 18:22:20.068 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:20.068 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:20.068 -07 000000382 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-17 18:22:20.098 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:22:20.098 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:22:20.098 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:20.098 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:22:20.098 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:22:20.098 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:20.108 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:20.108 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:22:20.108 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:22:20.118 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:22:20.248 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:20.248 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 335 ms overall
17-03-17 18:22:20.438 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:22:20.438 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 18:22:20.478 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:20.478 -07 000000448 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:22:20.488 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:20.488 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:20.488 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:22:20.488 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-17 18:22:21.438 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:21.438 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:22:21.448 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:21.448 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:21.468 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:21.468 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:21.468 -07 000000512 INF: Y Motor: Moved to 72.3496 after 1551 ms (table move)
17-03-17 18:22:21.468 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173605 mm (DAC = 37924)
17-03-17 18:22:21.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36318
17-03-17 18:22:21.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:21.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.478 -07 000000480 INF: FPGA: Recv ZSGSRD 36314
17-03-17 18:22:21.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.488 -07 000000480 INF: FPGA: Recv ZSGSRD 36315
17-03-17 18:22:21.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36314
17-03-17 18:22:21.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.508 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.508 -07 000000478 INF: FPGA: Recv ZSGSRD 36313
17-03-17 18:22:21.518 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36320
17-03-17 18:22:21.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.528 -07 000000448 INF: FPGA: Recv ZSGSRD 36320
17-03-17 18:22:21.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.538 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.538 -07 000000623 INF: FPGA: Recv ZSGSRD 36313
17-03-17 18:22:21.548 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.548 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.548 -07 000000429 INF: FPGA: Recv ZSGSRD 36317
17-03-17 18:22:21.558 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:21.558 -07 000000623 INF: FPGA: Recv ZSGSRD 36316
17-03-17 18:22:21.568 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.568 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:21.568 -07 000000480 INF: FPGA: Recv ZPIEZORD 32418
17-03-17 18:22:21.578 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:21.578 -07 000000593 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.6 V.
17-03-17 18:22:21.578 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36316 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36313 (-172.7 uncal um), Max = 36320 (-172.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:22:21.578 -07 000000593 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36316, posNoise = 4, negNoise = 3
17-03-17 18:22:21.578 -07 000000593 INF: Z Motor: After move to -0.173605, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:21.578 -07 000000593 INF: Z Motor: Settle wait time = 1554 ms, measure time = 105 ms (allowed 150 ms), total time = 1659 ms
17-03-17 18:22:21.578 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:21.588 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:21.628 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 18:22:21.628 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:21.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:21.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:21.628 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:21.628 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:21.638 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:21.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:21.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:21.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:21.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:21.638 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:21.648 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:22:21.648 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:22:21.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:21.708 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:21.908 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:21.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:21.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:21.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:21.948 -07 000000608 INF: FPGA: Recv @CAMSNAP 282
17-03-17 18:22:21.948 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:21.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 304 ms overall
17-03-17 18:22:22.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:22:22.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:22.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:22.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:22:22.048 -07 000000623 INF: Autofocus start
17-03-17 18:22:22.048 -07 000000623 INF: MeasureProfile start
17-03-17 18:22:22.048 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:22.058 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:22.058 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:22:22.058 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:22.068 -07 000000623 INF: MeasureProfile done
17-03-17 18:22:22.068 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:22:22.068 -07 000000623 INF: Autofocus finished
17-03-17 18:22:22.258 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:22.258 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:22:22.268 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173625040151326. ----------
17-03-17 18:22:22.268 -07 000000610 INF: Cycle	12	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:22.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36421, sync = True, waitForSettling = True)
17-03-17 18:22:22.268 -07 000000610 INF: Z Motor: Moving to -0.166725 mm, started at -0.173625 mm, distance = 6.90 um
17-03-17 18:22:22.268 -07 000000610 INF: FPGA: Xmit ZDACW 36421\n [Z Motor]
17-03-17 18:22:22.268 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:22:22.278 -07 000000610 INF: FPGA: 'ZDACW 36421' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:22:22.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:22.278 -07 000000512 INF: FPGA: Recv ZDACR 36421
17-03-17 18:22:22.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:22.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35244
17-03-17 18:22:22.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.448 -07 000000480 INF: FPGA: Recv ZSGSRD 35246
17-03-17 18:22:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.458 -07 000000478 INF: FPGA: Recv ZSGSRD 35237
17-03-17 18:22:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35244
17-03-17 18:22:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35244
17-03-17 18:22:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35246
17-03-17 18:22:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.498 -07 000000475 INF: FPGA: Recv ZSGSRD 35242
17-03-17 18:22:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.508 -07 000000480 INF: FPGA: Recv ZSGSRD 35238
17-03-17 18:22:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35245
17-03-17 18:22:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:22.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35241
17-03-17 18:22:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:22.538 -07 000000448 INF: FPGA: Recv ZPIEZORD 31003
17-03-17 18:22:22.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:22.548 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.3 V.
17-03-17 18:22:22.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35243 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35244 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35237 (-165.8 uncal um), Max = 35246 (-165.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:22:22.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35243, posNoise = 3, negNoise = 6
17-03-17 18:22:22.548 -07 000000610 INF: Z Motor: After move to -0.166725, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:22.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:22:22.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:22.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:22.548 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:22.548 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:22.548 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:22.548 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:22.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:22.558 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:22.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:22.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:22.558 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:22.558 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:22.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:22.558 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:22.558 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:22:22.558 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:22.568 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:22:22.568 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:22.568 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:22:22.568 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:22:22.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36598 150\n [Camera]
17-03-17 18:22:22.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:22:23.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:23.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:23.158 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:23.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:23.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:23.168 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:23.168 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:23.168 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:23.168 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:23.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:23.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36598 777
17-03-17 18:22:23.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:23.538 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:22:23.538 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:22:23.538 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:23.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:22:23.548 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:22:23.548 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:23.548 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:23.548 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:22:23.548 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:23.558 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:22:23.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:23.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:23.698 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:23.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:23.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:23.698 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:23.708 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:23.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:22:23.708 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:23.708 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:22:23.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:23.888 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:23.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36598 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-17 18:22:23.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:23.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166731860523216. ------
17-03-17 18:22:23.888 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17334 mm
17-03-17 18:22:23.888 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:23.888 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:24.038 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:24.048 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 153 ms overall
17-03-17 18:22:24.048 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:24.048 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:22:24.048 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 18:22:24.048 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37867, sync = True, waitForSettling = False)
17-03-17 18:22:24.048 -07 000000512 INF: Z Motor: Moving to -0.173344 mm, started at -0.166732 mm, distance = -6.61 um
17-03-17 18:22:24.058 -07 000000512 INF: FPGA: Xmit ZDACW 37867\n [Z Motor]
17-03-17 18:22:24.058 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:22:24.068 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:24.068 -07 000000512 INF: FPGA: 'ZDACW 37867' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:22:24.068 -07 000000476 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:22:24.078 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:22:24.078 -07 000000475 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:24.078 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:24.078 -07 000000475 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:22:24.078 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:24.078 -07 000000476 INF: FPGA: Recv ZDACR 37867
17-03-17 18:22:24.088 -07 000000512 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:24.088 -07 000000512 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:22:24.088 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:24.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:22:24.098 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:22:24.098 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:24.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:22:24.098 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:22:24.098 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:24.098 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:24.098 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:22:24.098 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:24.108 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:22:24.248 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:24.248 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:24.458 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:22:24.458 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 18:22:24.498 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:24.498 -07 000000476 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:22:24.508 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:24.508 -07 000000475 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:24.508 -07 000000475 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 18:22:24.508 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.167 mm/sec
17-03-17 18:22:24.638 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.997626,
17-03-17 18:22:25.458 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:25.458 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:22:25.468 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.468 -07 000000475 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:25.488 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:25.488 -07 000000475 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:25.488 -07 000000475 INF: Y Motor: Moved to 73.1758 after 1441 ms (table move)
17-03-17 18:22:25.488 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173344 mm (DAC = 37867)
17-03-17 18:22:25.488 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.488 -07 000000382 INF: FPGA: Recv ZSGSRD 36268
17-03-17 18:22:25.498 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:25.498 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.498 -07 000000475 INF: FPGA: Recv ZSGSRD 36274
17-03-17 18:22:25.508 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.508 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36280
17-03-17 18:22:25.518 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.518 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36279
17-03-17 18:22:25.528 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.528 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.528 -07 000000512 INF: FPGA: Recv ZSGSRD 36280
17-03-17 18:22:25.538 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.538 -07 000000448 INF: FPGA: Recv ZSGSRD 36272
17-03-17 18:22:25.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.548 -07 000000476 INF: FPGA: Recv ZSGSRD 36275
17-03-17 18:22:25.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.558 -07 000000448 INF: FPGA: Recv ZSGSRD 36273
17-03-17 18:22:25.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36274
17-03-17 18:22:25.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:25.578 -07 000000512 INF: FPGA: Recv ZSGSRD 36273
17-03-17 18:22:25.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.588 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:25.588 -07 000000475 INF: FPGA: Recv ZPIEZORD 32408
17-03-17 18:22:25.598 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:25.598 -07 000000438 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.5 V.
17-03-17 18:22:25.598 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36275 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36274 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36268 (-172.4 uncal um), Max = 36280 (-172.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:25.598 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36275, posNoise = 5, negNoise = 7
17-03-17 18:22:25.598 -07 000000438 INF: Z Motor: After move to -0.173344, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:25.598 -07 000000438 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:22:25.598 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:25.648 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1754 ms
17-03-17 18:22:25.648 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:25.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:25.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:25.648 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:25.648 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:25.648 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:25.648 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:25.658 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:25.658 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:25.658 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:25.658 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:25.668 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:22:25.668 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:22:25.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:25.708 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:25.908 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:25.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:25.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:25.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:25.948 -07 000000438 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:22:25.948 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:25.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 18:22:26.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:22:26.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:26.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:26.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:22:26.058 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:26.058 -07 000000448 INF: Autofocus start
17-03-17 18:22:26.058 -07 000000448 INF: MeasureProfile start
17-03-17 18:22:26.058 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:26.068 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:26.068 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:26.078 -07 000000448 INF: MeasureProfile done
17-03-17 18:22:26.078 -07 000000448 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:22:26.078 -07 000000448 INF: Autofocus finished
17-03-17 18:22:26.268 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:26.268 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:22:26.278 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173361647453514. ----------
17-03-17 18:22:26.278 -07 000000610 INF: Cycle	12	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:26.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-17 18:22:26.278 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173362 mm, distance = 6.90 um
17-03-17 18:22:26.278 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-17 18:22:26.288 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:22:26.288 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:22:26.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:26.288 -07 000000429 INF: FPGA: Recv ZDACR 36364
17-03-17 18:22:26.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35209
17-03-17 18:22:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35198
17-03-17 18:22:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.468 -07 000000382 INF: FPGA: Recv ZSGSRD 35195
17-03-17 18:22:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35201
17-03-17 18:22:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.488 -07 000000512 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:22:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.498 -07 000000475 INF: FPGA: Recv ZSGSRD 35208
17-03-17 18:22:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.508 -07 000000438 INF: FPGA: Recv ZSGSRD 35198
17-03-17 18:22:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.518 -07 000000476 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:22:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.528 -07 000000382 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:22:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:26.538 -07 000000475 INF: FPGA: Recv ZSGSRD 35202
17-03-17 18:22:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:26.548 -07 000000382 INF: FPGA: Recv ZPIEZORD 30952
17-03-17 18:22:26.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:26.558 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-17 18:22:26.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35202 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35203 (-165.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35195 (-165.6 uncal um), Max = 35209 (-165.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:26.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35202, posNoise = 7, negNoise = 7
17-03-17 18:22:26.558 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:26.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:22:26.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:26.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:26.558 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:26.558 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:26.558 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:26.558 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:22:26.558 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:26.558 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:26.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:26.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:26.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:26.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:26.568 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:26.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:26.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:26.568 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:26.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:22:26.568 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:26.568 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:22:26.578 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:26.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36540 150\n [Camera]
17-03-17 18:22:26.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:26.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:26.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:27.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:27.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:27.168 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:27.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:27.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:27.178 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:27.178 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:27.178 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:27.178 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:27.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:27.358 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36540 777
17-03-17 18:22:27.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:27.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:22:27.548 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:22:27.548 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:27.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:22:27.548 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:22:27.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:27.548 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:27.558 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:27.558 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:27.558 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:22:27.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:27.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:27.698 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:27.698 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:27.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:22:27.698 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:27.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:27.698 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:27.698 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:27.698 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:22:27.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:22:27.888 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:27.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36540 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:22:27.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:27.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166468467825404. ------
17-03-17 18:22:27.898 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:27.898 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17276 mm
17-03-17 18:22:27.898 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:27.898 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:22:27.898 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 18:22:27.898 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:27.898 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37739, sync = True, waitForSettling = False)
17-03-17 18:22:27.898 -07 000000429 INF: Z Motor: Moving to -0.172758 mm, started at -0.166468 mm, distance = -6.29 um
17-03-17 18:22:27.908 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:27.908 -07 000000429 INF: FPGA: Xmit ZDACW 37739\n [Z Motor]
17-03-17 18:22:27.908 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:22:27.918 -07 000000429 INF: FPGA: 'ZDACW 37739' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:27.918 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:27.928 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:27.928 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:22:27.938 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:27.938 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:22:27.938 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:27.938 -07 000000448 INF: FPGA: Recv ZDACR 37739
17-03-17 18:22:27.938 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:27.938 -07 000000462 INF: Y Motor: Moving 1354 steps-34
17-03-17 18:22:27.948 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:27.948 -07 000000429 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:22:27.948 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:28.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:22:28.078 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:22:28.078 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:28.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:22:28.078 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:22:28.078 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:28.088 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:28.088 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:22:28.088 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:22:28.088 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:22:28.118 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:28.118 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:22:28.318 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:22:28.318 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:22:28.348 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:28.358 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:22:28.358 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:28.358 -07 000000462 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:28.358 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:22:28.358 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.200 mm/sec
17-03-17 18:22:29.308 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:29.308 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:22:29.318 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.318 -07 000000462 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:29.328 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:29.328 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:29.328 -07 000000462 INF: Y Motor: Moved to 74.0083 after 1426 ms (table move)
17-03-17 18:22:29.328 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172758 mm (DAC = 37739)
17-03-17 18:22:29.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.338 -07 000000547 INF: FPGA: Recv ZSGSRD 36185
17-03-17 18:22:29.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:22:29.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36184
17-03-17 18:22:29.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:29.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.348 -07 000000382 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:22:29.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.358 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.358 -07 000000462 INF: FPGA: Recv ZSGSRD 36186
17-03-17 18:22:29.368 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.368 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:22:29.378 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.378 -07 000000462 INF: FPGA: Recv ZSGSRD 36186
17-03-17 18:22:29.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.388 -07 000000382 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:22:29.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.398 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.398 -07 000000438 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:22:29.408 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.408 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.408 -07 000000429 INF: FPGA: Recv ZSGSRD 36186
17-03-17 18:22:29.418 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.418 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:29.418 -07 000000438 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:22:29.428 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.428 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:29.428 -07 000000382 INF: FPGA: Recv ZPIEZORD 32266
17-03-17 18:22:29.438 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:29.438 -07 000000476 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.7 V.
17-03-17 18:22:29.438 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36183 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36184 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36176 (-171.8 uncal um), Max = 36189 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:29.438 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36183, posNoise = 6, negNoise = 7
17-03-17 18:22:29.438 -07 000000476 INF: Z Motor: After move to -0.172758, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:29.438 -07 000000476 INF: Z Motor: Settle wait time = 1428 ms, measure time = 102 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:22:29.438 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:29.488 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:22:29.488 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:29.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:29.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:29.488 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:29.488 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:29.488 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:29.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:29.498 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:29.498 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:29.498 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:29.498 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:29.508 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:22:29.508 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:22:29.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:29.558 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:22:29.758 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:22:29.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:22:29.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:29.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:22:29.788 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:29.788 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:29.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:22:29.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:22:29.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:29.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:22:29.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:22:29.888 -07 000000547 INF: Autofocus start
17-03-17 18:22:29.888 -07 000000547 INF: MeasureProfile start
17-03-17 18:22:29.888 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:29.888 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:29.898 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:29.898 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:29.898 -07 000000547 INF: MeasureProfile done
17-03-17 18:22:29.898 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:22:29.898 -07 000000547 INF: Autofocus finished
17-03-17 18:22:29.998 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.020806,
17-03-17 18:22:30.098 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:30.098 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:30.098 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172770619936472. ----------
17-03-17 18:22:30.098 -07 000000610 INF: Cycle	12	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:30.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36253, sync = True, waitForSettling = True)
17-03-17 18:22:30.108 -07 000000610 INF: Z Motor: Moving to -0.165956 mm, started at -0.172771 mm, distance = 6.82 um
17-03-17 18:22:30.108 -07 000000610 INF: FPGA: Xmit ZDACW 36253\n [Z Motor]
17-03-17 18:22:30.108 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:22:30.118 -07 000000610 INF: FPGA: 'ZDACW 36253' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:30.118 -07 000000462 INF: FPGA: Recv ZDACR 36253
17-03-17 18:22:30.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.278 -07 000000547 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:22:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.288 -07 000000512 INF: FPGA: Recv ZSGSRD 35129
17-03-17 18:22:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35125
17-03-17 18:22:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35122
17-03-17 18:22:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.318 -07 000000462 INF: FPGA: Recv ZSGSRD 35126
17-03-17 18:22:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.328 -07 000000547 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:22:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.338 -07 000000382 INF: FPGA: Recv ZSGSRD 35126
17-03-17 18:22:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.348 -07 000000438 INF: FPGA: Recv ZSGSRD 35124
17-03-17 18:22:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35123
17-03-17 18:22:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:30.368 -07 000000438 INF: FPGA: Recv ZSGSRD 35129
17-03-17 18:22:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:30.378 -07 000000512 INF: FPGA: Recv ZPIEZORD 30869
17-03-17 18:22:30.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:30.388 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.4 V.
17-03-17 18:22:30.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35126 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35126 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35122 (-165.1 uncal um), Max = 35129 (-165.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:22:30.388 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35126, posNoise = 3, negNoise = 4
17-03-17 18:22:30.388 -07 000000610 INF: Z Motor: After move to -0.165956, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:30.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:22:30.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:30.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:30.388 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:30.388 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:30.388 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:30.388 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:30.388 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:22:30.388 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:30.388 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:30.388 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:30.388 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:30.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:30.398 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:30.398 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:30.398 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:30.398 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:30.398 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:22:30.408 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:22:30.408 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:22:30.408 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:22:30.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36430 150\n [Camera]
17-03-17 18:22:30.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:30.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:30.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:30.998 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:30.998 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:30.998 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:22:31.008 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:31.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:31.008 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:31.008 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:31.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:22:31.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36430 777
17-03-17 18:22:31.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:31.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:22:31.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:22:31.378 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:31.378 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:22:31.378 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:22:31.378 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:31.388 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:31.388 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:22:31.388 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:31.398 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:22:31.528 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:31.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:31.538 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:31.538 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:31.538 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:22:31.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:31.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:31.538 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:31.538 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:31.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:22:31.588 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:31.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:31.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:22:31.728 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:31.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36430 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-17 18:22:31.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:22:31.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.16598022770263. ------
17-03-17 18:22:31.848 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:31.848 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17232 mm
17-03-17 18:22:31.848 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:31.848 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:22:31.848 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 18:22:31.848 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37643, sync = True, waitForSettling = False)
17-03-17 18:22:31.848 -07 000000382 INF: Z Motor: Moving to -0.172319 mm, started at -0.165980 mm, distance = -6.34 um
17-03-17 18:22:31.848 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:31.858 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:31.858 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:31.858 -07 000000476 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:22:31.868 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:22:31.868 -07 000000429 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:31.868 -07 000000382 INF: FPGA: Xmit ZDACW 37643\n [Z Motor]
17-03-17 18:22:31.868 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:31.868 -07 000000429 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:22:31.868 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:22:31.878 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:31.878 -07 000000382 INF: FPGA: 'ZDACW 37643' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:22:31.888 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:31.898 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:31.898 -07 000000478 INF: FPGA: Recv ZDACR 37643
17-03-17 18:22:31.908 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:31.908 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:22:31.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:22:31.918 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:31.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:31.918 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:22:31.918 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:22:31.918 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:31.928 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:31.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:22:31.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:22:31.928 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:22:32.078 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:32.078 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:22:32.258 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:22:32.258 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:22:32.288 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:32.288 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:22:32.298 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:32.298 -07 000000429 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:32.298 -07 000000429 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 18:22:32.298 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 18:22:33.248 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:33.248 -07 000000547 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:22:33.258 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:33.258 -07 000000429 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:33.268 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:33.268 -07 000000429 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:33.268 -07 000000429 INF: Y Motor: Moved to 74.8320 after 1417 ms (table move)
17-03-17 18:22:33.268 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172319 mm (DAC = 37643)
17-03-17 18:22:33.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.278 -07 000000476 INF: FPGA: Recv ZSGSRD 36111
17-03-17 18:22:33.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:22:33.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.278 -07 000000382 INF: FPGA: Recv ZSGSRD 36122
17-03-17 18:22:33.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:22:33.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.288 -07 000000478 INF: FPGA: Recv ZSGSRD 36114
17-03-17 18:22:33.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36103
17-03-17 18:22:33.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.308 -07 000000593 INF: FPGA: Recv ZSGSRD 36108
17-03-17 18:22:33.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.318 -07 000000512 INF: FPGA: Recv ZSGSRD 36120
17-03-17 18:22:33.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.328 -07 000000623 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:22:33.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.338 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.338 -07 000000512 INF: FPGA: Recv ZSGSRD 36124
17-03-17 18:22:33.348 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.348 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.348 -07 000000623 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:22:33.358 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.358 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:33.358 -07 000000512 INF: FPGA: Recv ZSGSRD 36109
17-03-17 18:22:33.368 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.368 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:33.368 -07 000000429 INF: FPGA: Recv ZPIEZORD 32208
17-03-17 18:22:33.378 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:33.378 -07 000000462 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.744 V. Piezo Error = -8.6 V.
17-03-17 18:22:33.378 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36114 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36115 (-171.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36103 (-171.4 uncal um), Max = 36124 (-171.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:22:33.378 -07 000000462 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36114, posNoise = 10, negNoise = 11
17-03-17 18:22:33.378 -07 000000462 INF: Z Motor: After move to -0.172319, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:33.378 -07 000000462 INF: Z Motor: Settle wait time = 1420 ms, measure time = 102 ms (allowed 150 ms), total time = 1522 ms
17-03-17 18:22:33.378 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:33.428 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:22:33.428 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:33.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:33.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:33.428 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:33.428 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:33.428 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:33.428 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:33.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:33.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:33.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:33.438 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:33.448 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:22:33.448 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:22:33.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:33.498 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:33.698 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:33.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:33.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:33.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:33.738 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:33.738 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:33.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 18:22:33.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 18:22:33.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:33.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:33.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:22:33.838 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:33.838 -07 000000623 INF: Autofocus start
17-03-17 18:22:33.838 -07 000000623 INF: MeasureProfile start
17-03-17 18:22:33.838 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:33.848 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:33.848 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:33.858 -07 000000623 INF: MeasureProfile done
17-03-17 18:22:33.858 -07 000000623 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:22:33.858 -07 000000623 INF: Autofocus finished
17-03-17 18:22:34.048 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:34.048 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:34.048 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.17232734929869. ----------
17-03-17 18:22:34.048 -07 000000610 INF: Cycle	12	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:34.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36157, sync = True, waitForSettling = True)
17-03-17 18:22:34.058 -07 000000610 INF: Z Motor: Moving to -0.165516 mm, started at -0.172327 mm, distance = 6.81 um
17-03-17 18:22:34.058 -07 000000610 INF: FPGA: Xmit ZDACW 36157\n [Z Motor]
17-03-17 18:22:34.058 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:22:34.068 -07 000000610 INF: FPGA: 'ZDACW 36157' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:34.068 -07 000000438 INF: FPGA: Recv ZDACR 36157
17-03-17 18:22:34.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.228 -07 000000512 INF: FPGA: Recv ZSGSRD 35050
17-03-17 18:22:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.238 -07 000000438 INF: FPGA: Recv ZSGSRD 35054
17-03-17 18:22:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.248 -07 000000382 INF: FPGA: Recv ZSGSRD 35056
17-03-17 18:22:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.258 -07 000000623 INF: FPGA: Recv ZSGSRD 35057
17-03-17 18:22:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35054
17-03-17 18:22:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.278 -07 000000512 INF: FPGA: Recv ZSGSRD 35056
17-03-17 18:22:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35062
17-03-17 18:22:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.298 -07 000000438 INF: FPGA: Recv ZSGSRD 35060
17-03-17 18:22:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.308 -07 000000480 INF: FPGA: Recv ZSGSRD 35048
17-03-17 18:22:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:34.318 -07 000000429 INF: FPGA: Recv ZSGSRD 35055
17-03-17 18:22:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:34.328 -07 000000476 INF: FPGA: Recv ZPIEZORD 30787
17-03-17 18:22:34.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:34.338 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.517 V. Piezo Error = -9.4 V.
17-03-17 18:22:34.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35055 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35056 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35048 (-164.6 uncal um), Max = 35062 (-164.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:22:34.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35055, posNoise = 7, negNoise = 7
17-03-17 18:22:34.338 -07 000000610 INF: Z Motor: After move to -0.165516, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:34.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:22:34.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:34.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:34.338 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:34.338 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:34.338 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:34.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:34.338 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:34.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:34.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:34.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:34.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:34.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:34.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:34.338 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:34.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:22:34.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:34.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:22:34.348 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:22:34.348 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:22:34.348 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:22:34.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36334 150\n [Camera]
17-03-17 18:22:34.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:34.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:34.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:34.948 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:34.958 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:34.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:34.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:34.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:34.958 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:34.958 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:34.958 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:35.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36334 777
17-03-17 18:22:35.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:35.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:22:35.328 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:22:35.328 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:35.328 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:22:35.328 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:22:35.328 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:35.328 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:35.338 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:35.338 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:35.338 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:22:35.358 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.023489,
17-03-17 18:22:35.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:35.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:35.478 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:35.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:35.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:35.488 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:35.488 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:35.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:22:35.488 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:35.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:22:35.668 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:22:35.678 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:35.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36334 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:22:35.868 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:22:35.868 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:35.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:22:35.868 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:35.868 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:22:35.868 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:35.878 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:35.878 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:35.878 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:22:35.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:22:35.888 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:22:35.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:22:35.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:22:35.958 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:22:35.958 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:22:35.958 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:22:35.968 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 18:22:35.978 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:35.978 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:22:36.478 -07 000000429 INF: FPGA: Recv EMIN
17-03-17 18:22:36.478 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:22:36.478 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:22:36.478 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-17 18:22:36.488 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:36.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:22:36.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165524108640565. ------
17-03-17 18:22:36.488 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:36.488 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14014 mm
17-03-17 18:22:36.498 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:36.498 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:36.498 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:22:36.498 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:22:36.498 -07 000000429 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 18:22:36.498 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:36.498 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30613, sync = True, waitForSettling = False)
17-03-17 18:22:36.498 -07 000000382 INF: Z Motor: Moving to -0.140137 mm, started at -0.165524 mm, distance = 25.39 um
17-03-17 18:22:36.508 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:36.508 -07 000000475 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:22:36.518 -07 000000382 INF: FPGA: Xmit ZDACW 30613\n [Z Motor]
17-03-17 18:22:36.518 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:22:36.518 -07 000000429 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:36.518 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:22:36.518 -07 000000429 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:22:36.518 -07 000000429 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:22:36.528 -07 000000382 INF: FPGA: 'ZDACW 30613' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:22:36.528 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:36.528 -07 000000512 INF: FPGA: Recv ZDACR 30613
17-03-17 18:22:36.538 -07 000000429 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:22:36.538 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:36.538 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:22:36.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:36.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:36.698 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:36.698 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 205 ms overall
17-03-17 18:22:38.158 -07 000000512 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 18:22:38.158 -07 000000429 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-17 18:22:38.158 -07 000000429 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:22:38.158 -07 000000429 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:22:38.158 -07 000000429 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-17 18:22:40.718 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.993549,
17-03-17 18:22:41.008 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:41.008 -07 000000608 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:22:41.018 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:41.018 -07 000000429 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:41.038 -07 000000429 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:41.038 -07 000000429 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:22:41.038 -07 000000429 INF: Y Motor: Moved to 59.9116 after 4544 ms
17-03-17 18:22:41.048 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140137 mm (DAC = 30613)
17-03-17 18:22:41.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.048 -07 000000476 INF: FPGA: Recv ZSGSRD 31105
17-03-17 18:22:41.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.058 -07 000000429 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:22:41.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.068 -07 000000476 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:22:41.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.078 -07 000000480 INF: FPGA: Recv ZSGSRD 31106
17-03-17 18:22:41.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.088 -07 000000476 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:22:41.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.098 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.098 -07 000000438 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:22:41.108 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.108 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.108 -07 000000608 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:22:41.118 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.118 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.118 -07 000000476 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:22:41.128 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:41.128 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.128 -07 000000382 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:22:41.138 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.138 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:41.138 -07 000000480 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:22:41.148 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.148 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:41.148 -07 000000480 INF: FPGA: Recv ZPIEZORD 26676
17-03-17 18:22:41.158 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.158 -07 000000623 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -9.7 V.
17-03-17 18:22:41.158 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31104 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31104 (-139.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 31102 (-139.3 uncal um), Max = 31107 (-139.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:22:41.158 -07 000000623 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31104, posNoise = 3, negNoise = 2
17-03-17 18:22:41.158 -07 000000623 INF: Z Motor: After move to -0.140137, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:41.158 -07 000000623 INF: Z Motor: Settle wait time = 4546 ms, measure time = 110 ms (allowed 150 ms), total time = 4656 ms
17-03-17 18:22:41.158 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:41.198 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4700 ms
17-03-17 18:22:41.198 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:41.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:41.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:41.198 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:41.198 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:41.198 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:41.198 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:41.198 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:41.198 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:22:41.218 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 18:22:41.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:41.228 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:22:41.228 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:41.238 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:22:41.238 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 37 ms.
17-03-17 18:22:41.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:41.288 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:41.488 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:41.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:41.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:41.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:41.528 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:41.528 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:41.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:22:41.588 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:41.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:22:41.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:41.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:41.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:22:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:41.628 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:41.628 -07 000000623 INF: Image SNR check: start
17-03-17 18:22:41.628 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:41.638 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:41.638 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:41.638 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=69.77]
17-03-17 18:22:41.648 -07 000000623 INF: Autofocus start
17-03-17 18:22:41.648 -07 000000623 INF: MeasureProfile start
17-03-17 18:22:41.658 -07 000000623 INF: MeasureProfile done
17-03-17 18:22:41.658 -07 000000623 INF: X=12  Z correction [um]=0.03377635
17-03-17 18:22:41.658 -07 000000623 INF: Autofocus finished
17-03-17 18:22:41.838 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:41.838 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:22:41.838 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140142046468468. ----------
17-03-17 18:22:41.848 -07 000000610 INF: Cycle	12	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:41.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29133, sync = True, waitForSettling = True)
17-03-17 18:22:41.848 -07 000000610 INF: Z Motor: Moving to -0.133362 mm, started at -0.140142 mm, distance = 6.78 um
17-03-17 18:22:41.848 -07 000000610 INF: FPGA: Xmit ZDACW 29133\n [Z Motor]
17-03-17 18:22:41.848 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:22:41.858 -07 000000610 INF: FPGA: 'ZDACW 29133' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:41.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:41.858 -07 000000480 INF: FPGA: Recv ZDACR 29133
17-03-17 18:22:41.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:41.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30050
17-03-17 18:22:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.028 -07 000000382 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:22:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.038 -07 000000623 INF: FPGA: Recv ZSGSRD 30049
17-03-17 18:22:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.048 -07 000000608 INF: FPGA: Recv ZSGSRD 30054
17-03-17 18:22:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30055
17-03-17 18:22:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.068 -07 000000382 INF: FPGA: Recv ZSGSRD 30048
17-03-17 18:22:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.078 -07 000000475 INF: FPGA: Recv ZSGSRD 30053
17-03-17 18:22:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.088 -07 000000382 INF: FPGA: Recv ZSGSRD 30049
17-03-17 18:22:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:22:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:42.108 -07 000000608 INF: FPGA: Recv ZSGSRD 30051
17-03-17 18:22:42.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:42.118 -07 000000623 INF: FPGA: Recv ZPIEZORD 25536
17-03-17 18:22:42.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:42.128 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.9 V.
17-03-17 18:22:42.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30050 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30050 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30046 (-132.6 uncal um), Max = 30055 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:22:42.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30050, posNoise = 5, negNoise = 4
17-03-17 18:22:42.128 -07 000000610 INF: Z Motor: After move to -0.133362, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:42.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:22:42.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:42.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:42.128 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:42.128 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:42.128 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:42.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:42.128 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:42.128 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:42.128 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:42.128 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:22:42.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:22:42.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:42.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:42.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:42.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:22:42.148 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:22:42.148 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 18:22:42.148 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:42.158 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:22:42.158 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:42.158 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:22:42.158 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 18:22:42.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29310 150\n [Camera]
17-03-17 18:22:42.358 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:42.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:22:42.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:22:42.758 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:42.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:22:42.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:22:42.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:42.768 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:42.768 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:42.768 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:42.768 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:42.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29310 777
17-03-17 18:22:43.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:43.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:22:43.148 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:22:43.148 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:43.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:22:43.148 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:22:43.148 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:43.148 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:43.148 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:22:43.148 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:43.158 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:22:43.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:43.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:43.288 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:43.288 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:43.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:22:43.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:43.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:43.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:43.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:43.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:22:43.478 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:43.478 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:43.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29310 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-17 18:22:43.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:22:43.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133370926871052. ------
17-03-17 18:22:43.488 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:43.488 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13984 mm
17-03-17 18:22:43.488 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:43.488 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:43.488 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:22:43.488 -07 000000475 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:22:43.488 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30548, sync = True, waitForSettling = False)
17-03-17 18:22:43.488 -07 000000608 INF: Z Motor: Moving to -0.139840 mm, started at -0.133371 mm, distance = -6.47 um
17-03-17 18:22:43.498 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:43.498 -07 000000608 INF: FPGA: Xmit ZDACW 30548\n [Z Motor]
17-03-17 18:22:43.498 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:22:43.508 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:43.508 -07 000000608 INF: FPGA: 'ZDACW 30548' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:22:43.508 -07 000000480 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:22:43.518 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:43.518 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:22:43.518 -07 000000475 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:43.518 -07 000000475 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:43.518 -07 000000475 INF: Y Motor: Moving 1330 steps2
17-03-17 18:22:43.528 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:43.528 -07 000000480 INF: FPGA: Recv ZDACR 30548
17-03-17 18:22:43.538 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:43.538 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:43.538 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:22:43.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:22:43.688 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:22:43.688 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:43.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:22:43.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:22:43.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:43.698 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:43.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:22:43.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:22:43.708 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:22:43.718 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:43.718 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:22:43.908 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:22:43.908 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:22:43.938 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:43.938 -07 000000480 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:22:43.948 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:43.948 -07 000000475 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:43.948 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:22:43.948 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:22:44.898 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:44.898 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:22:44.908 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:44.908 -07 000000475 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:44.928 -07 000000475 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:44.928 -07 000000475 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:44.928 -07 000000475 INF: Y Motor: Moved to 60.7334 after 1439 ms (table move)
17-03-17 18:22:44.928 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139840 mm (DAC = 30548)
17-03-17 18:22:44.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.928 -07 000000608 INF: FPGA: Recv ZSGSRD 31054
17-03-17 18:22:44.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:44.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.938 -07 000000608 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:22:44.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:44.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.948 -07 000000608 INF: FPGA: Recv ZSGSRD 31053
17-03-17 18:22:44.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:44.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.958 -07 000000608 INF: FPGA: Recv ZSGSRD 31059
17-03-17 18:22:44.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:44.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.968 -07 000000608 INF: FPGA: Recv ZSGSRD 31062
17-03-17 18:22:44.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:44.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.978 -07 000000608 INF: FPGA: Recv ZSGSRD 31057
17-03-17 18:22:44.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:44.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.988 -07 000000608 INF: FPGA: Recv ZSGSRD 31060
17-03-17 18:22:44.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:44.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:44.998 -07 000000608 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:22:45.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.008 -07 000000608 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:22:45.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.018 -07 000000608 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:22:45.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.028 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:45.028 -07 000000480 INF: FPGA: Recv ZPIEZORD 26857
17-03-17 18:22:45.038 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:45.038 -07 000000382 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.661 V. Piezo Error = -9.2 V.
17-03-17 18:22:45.038 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31055 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31054 (-139.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31050 (-139.0 uncal um), Max = 31062 (-139.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:22:45.038 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31055, posNoise = 7, negNoise = 5
17-03-17 18:22:45.038 -07 000000382 INF: Z Motor: After move to -0.139840, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:45.038 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:22:45.038 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:45.088 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:22:45.088 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:45.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:45.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:45.088 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:45.088 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:45.088 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:45.088 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:45.088 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:45.088 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:45.098 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:45.098 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:45.108 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:22:45.108 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:22:45.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:45.158 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:45.358 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:45.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:45.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:45.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:22:45.398 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:45.398 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:45.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:22:45.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:22:45.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:45.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:22:45.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:22:45.498 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:45.498 -07 000000512 INF: Autofocus start
17-03-17 18:22:45.498 -07 000000512 INF: MeasureProfile start
17-03-17 18:22:45.498 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:45.508 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:45.508 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:45.508 -07 000000512 INF: MeasureProfile done
17-03-17 18:22:45.508 -07 000000512 INF: X=-23  Z correction [um]=-0.1153628
17-03-17 18:22:45.508 -07 000000512 INF: Autofocus finished
17-03-17 18:22:45.708 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:45.708 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:45.708 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139827260073522. ----------
17-03-17 18:22:45.708 -07 000000610 INF: Cycle	12	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:45.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29036, sync = True, waitForSettling = True)
17-03-17 18:22:45.718 -07 000000610 INF: Z Motor: Moving to -0.132918 mm, started at -0.139827 mm, distance = 6.91 um
17-03-17 18:22:45.718 -07 000000610 INF: FPGA: Xmit ZDACW 29036\n [Z Motor]
17-03-17 18:22:45.718 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:22:45.728 -07 000000610 INF: FPGA: 'ZDACW 29036' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:45.728 -07 000000478 INF: FPGA: Recv ZDACR 29036
17-03-17 18:22:45.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.888 -07 000000623 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:22:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.898 -07 000000512 INF: FPGA: Recv ZSGSRD 29978
17-03-17 18:22:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.908 -07 000000623 INF: FPGA: Recv ZSGSRD 29981
17-03-17 18:22:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.918 -07 000000512 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:22:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.928 -07 000000448 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:22:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29983
17-03-17 18:22:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.948 -07 000000623 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:22:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.958 -07 000000480 INF: FPGA: Recv ZSGSRD 29976
17-03-17 18:22:45.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.968 -07 000000623 INF: FPGA: Recv ZSGSRD 29978
17-03-17 18:22:45.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:45.978 -07 000000480 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:22:45.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:45.988 -07 000000623 INF: FPGA: Recv ZPIEZORD 25471
17-03-17 18:22:45.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:45.998 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.9 V.
17-03-17 18:22:45.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29981 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29982 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29976 (-132.1 uncal um), Max = 29985 (-132.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:22:45.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29981, posNoise = 4, negNoise = 5
17-03-17 18:22:45.998 -07 000000610 INF: Z Motor: After move to -0.132918, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:45.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:22:45.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:45.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:45.998 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:45.998 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:45.998 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:45.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:45.998 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:45.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:45.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:45.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:45.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:45.998 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:46.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:46.008 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:46.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:46.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:46.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:22:46.018 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:22:46.018 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:22:46.018 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:22:46.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29212 150\n [Camera]
17-03-17 18:22:46.078 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.015368,
17-03-17 18:22:46.218 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:46.588 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:46.618 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:46.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:46.618 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:46.618 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:46.618 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:22:46.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:46.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:46.618 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:46.618 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:46.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:22:46.808 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29212 777
17-03-17 18:22:46.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:22:46.988 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:22:46.988 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:22:46.988 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:46.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:22:46.998 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:22:46.998 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:46.998 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:46.998 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:46.998 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:47.008 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:22:47.148 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:47.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:47.148 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:47.148 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:47.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:22:47.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:47.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:47.148 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:47.148 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:47.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:22:47.338 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:47.338 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:47.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29212 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:22:47.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:22:47.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.13292765623327. ------
17-03-17 18:22:47.348 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:47.348 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13957 mm
17-03-17 18:22:47.348 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:47.348 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30489, sync = True, waitForSettling = False)
17-03-17 18:22:47.348 -07 000000382 INF: Z Motor: Moving to -0.139570 mm, started at -0.132928 mm, distance = -6.64 um
17-03-17 18:22:47.348 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:22:47.348 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:22:47.348 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:47.358 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:47.358 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:47.358 -07 000000593 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:22:47.368 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:22:47.368 -07 000000382 INF: FPGA: Xmit ZDACW 30489\n [Z Motor]
17-03-17 18:22:47.368 -07 000000608 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:47.478 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:47.478 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:22:47.478 -07 000000382 INF: FPGA: 'ZDACW 30489' command took 0 ms to send, 0 ms to get response, and 133 ms overall
17-03-17 18:22:47.478 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:47.478 -07 000000608 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:22:47.488 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:47.488 -07 000000593 INF: FPGA: Recv ZDACR 30489
17-03-17 18:22:47.498 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:22:47.498 -07 000000382 INF: Z Motor: MoveAbsStepped took 146 ms (did NOT wait for settling yet))
17-03-17 18:22:47.498 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:47.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:22:47.548 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:22:47.548 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:47.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:22:47.548 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:22:47.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:47.548 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:47.558 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:22:47.558 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:22:47.558 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:22:47.678 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:47.678 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 328 ms overall
17-03-17 18:22:47.878 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:22:47.878 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 392 ms overall
17-03-17 18:22:47.908 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:47.908 -07 000000475 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:22:47.918 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:47.918 -07 000000608 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:47.918 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:22:47.918 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-17 18:22:48.868 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:48.868 -07 000000593 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:22:48.878 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:48.878 -07 000000608 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:48.898 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:48.898 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:48.898 -07 000000608 INF: Y Motor: Moved to 61.5645 after 1548 ms (table move)
17-03-17 18:22:48.898 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139570 mm (DAC = 30489)
17-03-17 18:22:48.898 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.898 -07 000000475 INF: FPGA: Recv ZSGSRD 31019
17-03-17 18:22:48.908 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:48.908 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.908 -07 000000593 INF: FPGA: Recv ZSGSRD 31018
17-03-17 18:22:48.918 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.918 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.918 -07 000000476 INF: FPGA: Recv ZSGSRD 31015
17-03-17 18:22:48.928 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.928 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.928 -07 000000608 INF: FPGA: Recv ZSGSRD 31023
17-03-17 18:22:48.938 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.938 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.938 -07 000000448 INF: FPGA: Recv ZSGSRD 31022
17-03-17 18:22:48.948 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.948 -07 000000382 INF: FPGA: Recv ZSGSRD 31023
17-03-17 18:22:48.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.958 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.958 -07 000000448 INF: FPGA: Recv ZSGSRD 31022
17-03-17 18:22:48.968 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.968 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.968 -07 000000593 INF: FPGA: Recv ZSGSRD 31006
17-03-17 18:22:48.978 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.978 -07 000000448 INF: FPGA: Recv ZSGSRD 31013
17-03-17 18:22:48.988 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.988 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:48.988 -07 000000475 INF: FPGA: Recv ZSGSRD 31019
17-03-17 18:22:48.998 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:48.998 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:48.998 -07 000000448 INF: FPGA: Recv ZPIEZORD 26862
17-03-17 18:22:49.008 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:49.008 -07 000000462 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.652 V. Piezo Error = -9.1 V.
17-03-17 18:22:49.008 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31018 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31019 (-138.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31006 (-138.7 uncal um), Max = 31023 (-138.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 18:22:49.008 -07 000000462 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31018, posNoise = 5, negNoise = 12
17-03-17 18:22:49.008 -07 000000462 INF: Z Motor: After move to -0.139570, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:49.008 -07 000000462 INF: Z Motor: Settle wait time = 1553 ms, measure time = 104 ms (allowed 150 ms), total time = 1657 ms
17-03-17 18:22:49.008 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:49.058 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 18:22:49.058 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:49.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:49.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:49.058 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:49.058 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:49.058 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:49.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:49.068 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:49.068 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:49.068 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:49.068 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:49.068 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:22:49.068 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:22:49.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:49.118 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:49.318 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:49.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:49.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:49.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:49.358 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:49.358 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:49.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:22:49.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 18:22:49.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:49.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:49.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:22:49.558 -07 000000569 INF: Autofocus start
17-03-17 18:22:49.558 -07 000000569 INF: MeasureProfile start
17-03-17 18:22:49.558 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:49.558 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:49.568 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:49.568 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:49.568 -07 000000569 INF: MeasureProfile done
17-03-17 18:22:49.568 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:22:49.568 -07 000000569 INF: Autofocus finished
17-03-17 18:22:49.768 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:49.768 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:49.768 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139589564224276. ----------
17-03-17 18:22:49.768 -07 000000610 INF: Cycle	12	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:49.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29013, sync = True, waitForSettling = True)
17-03-17 18:22:49.778 -07 000000610 INF: Z Motor: Moving to -0.132813 mm, started at -0.139590 mm, distance = 6.78 um
17-03-17 18:22:49.778 -07 000000610 INF: FPGA: Xmit ZDACW 29013\n [Z Motor]
17-03-17 18:22:49.778 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:22:49.788 -07 000000610 INF: FPGA: 'ZDACW 29013' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:49.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:49.788 -07 000000462 INF: FPGA: Recv ZDACR 29013
17-03-17 18:22:49.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:49.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:49.948 -07 000000608 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:22:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:49.958 -07 000000593 INF: FPGA: Recv ZSGSRD 29968
17-03-17 18:22:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:49.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29971
17-03-17 18:22:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:49.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:49.978 -07 000000475 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:22:49.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:49.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:49.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29965
17-03-17 18:22:49.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:49.998 -07 000000448 INF: FPGA: Recv ZSGSRD 29972
17-03-17 18:22:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:50.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:50.008 -07 000000382 INF: FPGA: Recv ZSGSRD 29971
17-03-17 18:22:50.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:50.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:50.018 -07 000000593 INF: FPGA: Recv ZSGSRD 29969
17-03-17 18:22:50.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:50.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:50.028 -07 000000462 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:22:50.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:50.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29972
17-03-17 18:22:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:50.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:50.048 -07 000000382 INF: FPGA: Recv ZPIEZORD 25500
17-03-17 18:22:50.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:50.058 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.8 V.
17-03-17 18:22:50.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29968 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29968 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29964 (-132.0 uncal um), Max = 29972 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:22:50.058 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29968, posNoise = 4, negNoise = 4
17-03-17 18:22:50.058 -07 000000610 INF: Z Motor: After move to -0.132813, error = -0.000031, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:50.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:22:50.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:50.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:50.058 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:50.058 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:50.058 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:50.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:50.058 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:50.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:50.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:50.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:50.068 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:50.068 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:50.068 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:22:50.068 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:50.068 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:22:50.068 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:50.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:22:50.088 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:22:50.088 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:22:50.088 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:22:50.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29190 150\n [Camera]
17-03-17 18:22:50.288 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:50.678 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:50.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:50.678 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:50.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:50.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:50.678 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:50.688 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:50.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:50.688 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:50.688 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:50.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29190 777
17-03-17 18:22:51.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:51.058 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 18:22:51.058 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 18:22:51.058 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:51.058 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:22:51.058 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:22:51.058 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:51.058 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:22:51.068 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:51.068 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:51.068 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:22:51.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:51.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:51.208 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:51.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:51.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:51.218 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:51.218 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:51.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:22:51.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:51.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:22:51.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:22:51.398 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:51.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29190 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 18:22:51.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:22:51.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132844141475427. ------
17-03-17 18:22:51.408 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:51.408 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13918 mm
17-03-17 18:22:51.408 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:51.528 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:51.528 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 18:22:51.528 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30404, sync = True, waitForSettling = False)
17-03-17 18:22:51.528 -07 000000448 INF: Z Motor: Moving to -0.139181 mm, started at -0.132844 mm, distance = -6.34 um
17-03-17 18:22:51.528 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:22:51.528 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:22:51.538 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:51.538 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.99219,
17-03-17 18:22:51.538 -07 000000608 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:22:51.548 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:51.548 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:22:51.548 -07 000000569 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:51.548 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:51.548 -07 000000569 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:22:51.558 -07 000000448 INF: FPGA: Xmit ZDACW 30404\n [Z Motor]
17-03-17 18:22:51.558 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:22:51.568 -07 000000448 INF: FPGA: 'ZDACW 30404' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 18:22:51.578 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:51.588 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:51.588 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:51.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:51.588 -07 000000480 INF: FPGA: Recv ZDACR 30404
17-03-17 18:22:51.598 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:51.598 -07 000000448 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-17 18:22:51.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:22:51.618 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:22:51.618 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:51.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:22:51.618 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:22:51.618 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:51.618 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:51.618 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:22:51.618 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:51.628 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:22:51.748 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:51.748 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 18:22:51.948 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:22:51.948 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 18:22:51.988 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:51.988 -07 000000623 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:22:51.998 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:51.998 -07 000000569 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:51.998 -07 000000569 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:22:51.998 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.838 mm, average velocity = 2.070 mm/sec
17-03-17 18:22:52.948 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:52.948 -07 000000623 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:22:52.958 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:52.958 -07 000000569 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:52.998 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:52.998 -07 000000569 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:53.008 -07 000000569 INF: Y Motor: Moved to 62.3960 after 1473 ms (table move)
17-03-17 18:22:53.008 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139181 mm (DAC = 30404)
17-03-17 18:22:53.008 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.008 -07 000000429 INF: FPGA: Recv ZSGSRD 30957
17-03-17 18:22:53.018 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:53.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.018 -07 000000476 INF: FPGA: Recv ZSGSRD 30955
17-03-17 18:22:53.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.028 -07 000000475 INF: FPGA: Recv ZSGSRD 30950
17-03-17 18:22:53.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.038 -07 000000429 INF: FPGA: Recv ZSGSRD 30955
17-03-17 18:22:53.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.048 -07 000000608 INF: FPGA: Recv ZSGSRD 30948
17-03-17 18:22:53.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.058 -07 000000475 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:22:53.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.068 -07 000000569 INF: FPGA: Recv ZSGSRD 30965
17-03-17 18:22:53.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.078 -07 000000623 INF: FPGA: Recv ZSGSRD 30958
17-03-17 18:22:53.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.088 -07 000000623 INF: FPGA: Recv ZSGSRD 30959
17-03-17 18:22:53.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.098 -07 000000623 INF: FPGA: Recv ZSGSRD 30956
17-03-17 18:22:53.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.108 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:53.108 -07 000000608 INF: FPGA: Recv ZPIEZORD 26811
17-03-17 18:22:53.118 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.118 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.1 V.
17-03-17 18:22:53.118 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30956 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30956 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30948 (-138.3 uncal um), Max = 30965 (-138.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:22:53.118 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30956, posNoise = 9, negNoise = 8
17-03-17 18:22:53.118 -07 000000462 INF: Z Motor: After move to -0.139181, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:53.118 -07 000000462 INF: Z Motor: Settle wait time = 1480 ms, measure time = 104 ms (allowed 150 ms), total time = 1584 ms
17-03-17 18:22:53.118 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:53.168 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1755 ms
17-03-17 18:22:53.168 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:53.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:53.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:53.168 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:53.168 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:53.168 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:53.168 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:53.168 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:53.168 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:53.178 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:53.178 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:53.188 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:22:53.188 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:22:53.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:53.228 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:53.428 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:53.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:53.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:53.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:22:53.468 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:53.468 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:53.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:22:53.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:22:53.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:53.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:22:53.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:22:53.568 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:53.568 -07 000000475 INF: Autofocus start
17-03-17 18:22:53.568 -07 000000475 INF: MeasureProfile start
17-03-17 18:22:53.568 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:53.578 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:53.578 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:53.578 -07 000000475 INF: MeasureProfile done
17-03-17 18:22:53.578 -07 000000475 INF: X=43  Z correction [um]=0.1828984
17-03-17 18:22:53.578 -07 000000475 INF: Autofocus finished
17-03-17 18:22:53.778 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:53.778 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:53.778 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139191263071487. ----------
17-03-17 18:22:53.788 -07 000000610 INF: Cycle	12	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:53.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28957, sync = True, waitForSettling = True)
17-03-17 18:22:53.788 -07 000000610 INF: Z Motor: Moving to -0.132557 mm, started at -0.139191 mm, distance = 6.63 um
17-03-17 18:22:53.788 -07 000000610 INF: FPGA: Xmit ZDACW 28957\n [Z Motor]
17-03-17 18:22:53.788 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:22:53.798 -07 000000610 INF: FPGA: 'ZDACW 28957' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:22:53.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:53.798 -07 000000623 INF: FPGA: Recv ZDACR 28957
17-03-17 18:22:53.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.958 -07 000000475 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:22:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.968 -07 000000623 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:22:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.978 -07 000000475 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:22:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:22:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:53.998 -07 000000429 INF: FPGA: Recv ZSGSRD 29924
17-03-17 18:22:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:54.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:22:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:54.018 -07 000000608 INF: FPGA: Recv ZSGSRD 29930
17-03-17 18:22:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:54.028 -07 000000476 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:22:54.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:54.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:22:54.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:54.048 -07 000000476 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:22:54.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:54.058 -07 000000623 INF: FPGA: Recv ZPIEZORD 25436
17-03-17 18:22:54.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:54.068 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.8 V.
17-03-17 18:22:54.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29924 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29924 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29919 (-131.7 uncal um), Max = 29930 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:22:54.068 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29924, posNoise = 6, negNoise = 5
17-03-17 18:22:54.068 -07 000000610 INF: Z Motor: After move to -0.132557, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:54.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:22:54.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:54.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:54.068 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:54.068 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:54.068 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:54.068 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:54.068 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:54.068 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:54.068 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:54.068 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:54.068 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:54.068 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:54.078 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:54.078 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:54.078 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:54.078 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:54.088 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:22:54.088 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:22:54.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:22:54.088 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:22:54.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29134 150\n [Camera]
17-03-17 18:22:54.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:54.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:54.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:54.688 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:54.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:54.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:54.688 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:54.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:54.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:22:54.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:54.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:22:54.878 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29134 780
17-03-17 18:22:55.028 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:55.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:22:55.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:22:55.078 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:55.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:22:55.078 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:22:55.078 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:55.078 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:55.078 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:22:55.078 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:55.088 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:22:55.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:22:55.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:22:55.218 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:55.218 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:55.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:22:55.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:22:55.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:22:55.218 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:55.218 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:55.218 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:22:55.408 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:22:55.408 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:55.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29134 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:22:55.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:22:55.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.13256147614119. ------
17-03-17 18:22:55.408 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:55.408 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13931 mm
17-03-17 18:22:55.408 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:55.418 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:55.418 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:22:55.418 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:22:55.418 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:22:55.418 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30431, sync = True, waitForSettling = False)
17-03-17 18:22:55.418 -07 000000623 INF: Z Motor: Moving to -0.139304 mm, started at -0.132561 mm, distance = -6.74 um
17-03-17 18:22:55.418 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:55.428 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:55.428 -07 000000547 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:22:55.438 -07 000000623 INF: FPGA: Xmit ZDACW 30431\n [Z Motor]
17-03-17 18:22:55.438 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:22:55.438 -07 000000462 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:55.438 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:22:55.438 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:55.438 -07 000000462 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:22:55.448 -07 000000623 INF: FPGA: 'ZDACW 30431' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:22:55.448 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:55.448 -07 000000593 INF: FPGA: Recv ZDACR 30431
17-03-17 18:22:55.458 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:55.458 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:55.458 -07 000000623 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:22:55.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:22:55.608 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:22:55.608 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:55.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:22:55.608 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:22:55.608 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:55.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:55.618 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:22:55.618 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:22:55.618 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:22:55.618 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:55.618 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 18:22:55.838 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:22:55.838 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 399 ms overall
17-03-17 18:22:55.868 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:55.868 -07 000000415 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:22:55.878 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:55.878 -07 000000462 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:55.878 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:22:55.878 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.837 mm, average velocity = 2.097 mm/sec
17-03-17 18:22:56.588 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:22:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:22:56.828 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:56.828 -07 000000382 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:22:56.838 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:56.838 -07 000000462 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:56.848 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:22:56.858 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:22:56.858 -07 000000462 INF: Y Motor: Moved to 63.2246 after 1438 ms (table move)
17-03-17 18:22:56.858 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139304 mm (DAC = 30431)
17-03-17 18:22:56.858 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.858 -07 000000415 INF: FPGA: Recv ZSGSRD 30981
17-03-17 18:22:56.868 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:22:56.868 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.868 -07 000000478 INF: FPGA: Recv ZSGSRD 30977
17-03-17 18:22:56.878 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.878 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.878 -07 000000382 INF: FPGA: Recv ZSGSRD 30978
17-03-17 18:22:56.888 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30965
17-03-17 18:22:56.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.898 -07 000000448 INF: FPGA: Recv ZSGSRD 30971
17-03-17 18:22:56.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.908 -07 000000480 INF: FPGA: Recv ZSGSRD 30974
17-03-17 18:22:56.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.918 -07 000000438 INF: FPGA: Recv ZSGSRD 30975
17-03-17 18:22:56.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.928 -07 000000623 INF: FPGA: Recv ZSGSRD 30982
17-03-17 18:22:56.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:56.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.948 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.990831,
17-03-17 18:22:56.948 -07 000000561 INF: FPGA: Recv ZSGSRD 30975
17-03-17 18:22:56.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:56.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:56.978 -07 000000438 INF: FPGA: Recv ZSGSRD 30976
17-03-17 18:22:56.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:56.998 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:56.998 -07 000000415 INF: FPGA: Recv ZPIEZORD 26872
17-03-17 18:22:57.008 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:22:57.008 -07 000000475 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.0 V.
17-03-17 18:22:57.008 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30976 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30965 (-138.4 uncal um), Max = 30982 (-138.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:22:57.008 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 7, negNoise = 10
17-03-17 18:22:57.008 -07 000000475 INF: Z Motor: After move to -0.139304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:57.008 -07 000000475 INF: Z Motor: Settle wait time = 1442 ms, measure time = 146 ms (allowed 150 ms), total time = 1588 ms
17-03-17 18:22:57.008 -07 000000475 INF: Z Motor: Waiting extra 4 ms after reading position to reach expected total of 150 ms
17-03-17 18:22:57.018 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:22:57.018 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:22:57.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:57.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:57.018 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:57.018 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:57.018 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:22:57.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:57.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:22:57.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:22:57.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:22:57.028 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:22:57.028 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:22:57.028 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:22:57.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:22:57.078 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:22:57.278 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:22:57.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:22:57.328 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:22:57.328 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:22:57.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 294 ms overall
17-03-17 18:22:57.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:22:57.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:22:57.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:22:57.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:57.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:22:57.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:22:57.528 -07 000000429 INF: Autofocus start
17-03-17 18:22:57.528 -07 000000429 INF: MeasureProfile start
17-03-17 18:22:57.528 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:57.528 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:57.538 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:22:57.538 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:22:57.538 -07 000000429 INF: MeasureProfile done
17-03-17 18:22:57.538 -07 000000429 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 18:22:57.538 -07 000000429 INF: Autofocus finished
17-03-17 18:22:57.738 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:22:57.738 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:22:57.738 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139313323102181. ----------
17-03-17 18:22:57.738 -07 000000610 INF: Cycle	12	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:22:57.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28858, sync = True, waitForSettling = True)
17-03-17 18:22:57.748 -07 000000610 INF: Z Motor: Moving to -0.132103 mm, started at -0.139313 mm, distance = 7.21 um
17-03-17 18:22:57.748 -07 000000610 INF: FPGA: Xmit ZDACW 28858\n [Z Motor]
17-03-17 18:22:57.748 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:22:57.758 -07 000000610 INF: FPGA: 'ZDACW 28858' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:22:57.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:57.758 -07 000000415 INF: FPGA: Recv ZDACR 28858
17-03-17 18:22:57.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:22:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.918 -07 000000475 INF: FPGA: Recv ZSGSRD 29859
17-03-17 18:22:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.928 -07 000000438 INF: FPGA: Recv ZSGSRD 29857
17-03-17 18:22:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.938 -07 000000623 INF: FPGA: Recv ZSGSRD 29858
17-03-17 18:22:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.948 -07 000000623 INF: FPGA: Recv ZSGSRD 29854
17-03-17 18:22:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29856
17-03-17 18:22:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.968 -07 000000475 INF: FPGA: Recv ZSGSRD 29858
17-03-17 18:22:57.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.978 -07 000000415 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:22:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.988 -07 000000623 INF: FPGA: Recv ZSGSRD 29853
17-03-17 18:22:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:57.998 -07 000000429 INF: FPGA: Recv ZSGSRD 29857
17-03-17 18:22:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:22:58.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29857
17-03-17 18:22:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:58.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:22:58.018 -07 000000415 INF: FPGA: Recv ZPIEZORD 25390
17-03-17 18:22:58.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:22:58.028 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.8 V.
17-03-17 18:22:58.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29856 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29857 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29850 (-131.3 uncal um), Max = 29859 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:22:58.028 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29856, posNoise = 3, negNoise = 6
17-03-17 18:22:58.028 -07 000000610 INF: Z Motor: After move to -0.132103, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:22:58.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:22:58.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:22:58.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:22:58.028 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:22:58.028 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:22:58.028 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:22:58.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:22:58.028 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:22:58.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:22:58.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:22:58.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:22:58.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:22:58.028 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:22:58.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:22:58.038 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:22:58.038 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:22:58.038 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:22:58.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:22:58.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:22:58.048 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:22:58.048 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:22:58.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29035 150\n [Camera]
17-03-17 18:22:58.258 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:22:58.648 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:22:58.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:22:58.648 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:58.648 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:58.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:22:58.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:22:58.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:22:58.648 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:58.648 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:58.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:22:58.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29035 777
17-03-17 18:22:58.988 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:22:59.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:22:59.028 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:22:59.028 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:59.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:22:59.028 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:22:59.028 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:59.028 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:59.028 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:22:59.028 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:22:59.038 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:22:59.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:22:59.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:22:59.188 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:22:59.188 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:22:59.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:22:59.188 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:22:59.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:22:59.188 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:22:59.188 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:22:59.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:22:59.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:22:59.368 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:22:59.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29035 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:22:59.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:22:59.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.13212462971555. ------
17-03-17 18:22:59.488 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13865 mm
17-03-17 18:22:59.488 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:22:59.488 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:22:59.488 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:22:59.488 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 18:22:59.488 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30288, sync = True, waitForSettling = False)
17-03-17 18:22:59.488 -07 000000415 INF: Z Motor: Moving to -0.138650 mm, started at -0.132125 mm, distance = -6.52 um
17-03-17 18:22:59.498 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:59.498 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:22:59.498 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:22:59.498 -07 000000476 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:22:59.508 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:59.508 -07 000000382 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:59.508 -07 000000415 INF: FPGA: Xmit ZDACW 30288\n [Z Motor]
17-03-17 18:22:59.508 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:22:59.508 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:22:59.508 -07 000000382 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:22:59.518 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:22:59.518 -07 000000415 INF: FPGA: 'ZDACW 30288' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:22:59.528 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:22:59.538 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:22:59.538 -07 000000438 INF: FPGA: Recv ZDACR 30288
17-03-17 18:22:59.548 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:22:59.548 -07 000000415 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:22:59.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:22:59.578 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:22:59.578 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:59.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:22:59.578 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:22:59.578 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:22:59.578 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:22:59.588 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:22:59.588 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:22:59.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:22:59.718 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:22:59.718 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:22:59.898 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:22:59.898 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:22:59.938 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:22:59.938 -07 000000438 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:22:59.948 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:22:59.948 -07 000000382 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:22:59.948 -07 000000382 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:22:59.948 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:23:00.898 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:00.898 -07 000000512 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:23:00.908 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:00.908 -07 000000382 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:00.918 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:00.918 -07 000000382 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:00.918 -07 000000382 INF: Y Motor: Moved to 64.0576 after 1426 ms (table move)
17-03-17 18:23:00.928 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138650 mm (DAC = 30288)
17-03-17 18:23:00.928 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.928 -07 000000608 INF: FPGA: Recv ZSGSRD 30868
17-03-17 18:23:00.938 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.938 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30874
17-03-17 18:23:00.948 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.948 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.948 -07 000000382 INF: FPGA: Recv ZSGSRD 30884
17-03-17 18:23:00.958 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30878
17-03-17 18:23:00.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.968 -07 000000382 INF: FPGA: Recv ZSGSRD 30876
17-03-17 18:23:00.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.978 -07 000000608 INF: FPGA: Recv ZSGSRD 30867
17-03-17 18:23:00.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.988 -07 000000608 INF: FPGA: Recv ZSGSRD 30868
17-03-17 18:23:00.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:00.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:00.998 -07 000000608 INF: FPGA: Recv ZSGSRD 30867
17-03-17 18:23:01.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.008 -07 000000608 INF: FPGA: Recv ZSGSRD 30868
17-03-17 18:23:01.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.018 -07 000000608 INF: FPGA: Recv ZSGSRD 30870
17-03-17 18:23:01.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.028 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:01.028 -07 000000608 INF: FPGA: Recv ZPIEZORD 26724
17-03-17 18:23:01.038 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.038 -07 000000480 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.1 V.
17-03-17 18:23:01.038 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30872 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30869 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30867 (-137.8 uncal um), Max = 30884 (-137.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:23:01.038 -07 000000480 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30872, posNoise = 12, negNoise = 5
17-03-17 18:23:01.038 -07 000000480 INF: Z Motor: After move to -0.138650, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:01.038 -07 000000480 INF: Z Motor: Settle wait time = 1430 ms, measure time = 111 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:23:01.038 -07 000000480 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:01.078 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:23:01.078 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:01.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:01.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:01.078 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:01.078 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:01.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:01.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:01.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:01.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:01.088 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:01.088 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:01.098 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:23:01.098 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:23:01.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:01.148 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:01.338 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:01.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:01.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:01.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:01.378 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:01.378 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:01.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:23:01.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:23:01.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:01.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:01.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:23:01.488 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:01.488 -07 000000462 INF: Autofocus start
17-03-17 18:23:01.488 -07 000000462 INF: MeasureProfile start
17-03-17 18:23:01.488 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:01.498 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:01.498 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:01.498 -07 000000462 INF: MeasureProfile done
17-03-17 18:23:01.498 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:23:01.498 -07 000000462 INF: Autofocus finished
17-03-17 18:23:01.588 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:01.698 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:01.698 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:01.698 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138651629251579. ----------
17-03-17 18:23:01.698 -07 000000610 INF: Cycle	12	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:01.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28783, sync = True, waitForSettling = True)
17-03-17 18:23:01.708 -07 000000610 INF: Z Motor: Moving to -0.131760 mm, started at -0.138652 mm, distance = 6.89 um
17-03-17 18:23:01.708 -07 000000610 INF: FPGA: Xmit ZDACW 28783\n [Z Motor]
17-03-17 18:23:01.708 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:23:01.718 -07 000000610 INF: FPGA: 'ZDACW 28783' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:01.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:01.718 -07 000000382 INF: FPGA: Recv ZDACR 28783
17-03-17 18:23:01.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:01.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.878 -07 000000462 INF: FPGA: Recv ZSGSRD 29801
17-03-17 18:23:01.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:01.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.888 -07 000000382 INF: FPGA: Recv ZSGSRD 29805
17-03-17 18:23:01.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29799
17-03-17 18:23:01.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.908 -07 000000512 INF: FPGA: Recv ZSGSRD 29796
17-03-17 18:23:01.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.918 -07 000000512 INF: FPGA: Recv ZSGSRD 29799
17-03-17 18:23:01.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.928 -07 000000382 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:23:01.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.938 -07 000000382 INF: FPGA: Recv ZSGSRD 29797
17-03-17 18:23:01.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29795
17-03-17 18:23:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29808
17-03-17 18:23:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:01.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29800
17-03-17 18:23:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:01.978 -07 000000462 INF: FPGA: Recv ZPIEZORD 25327
17-03-17 18:23:01.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:01.988 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.8 V.
17-03-17 18:23:01.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29800 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29795 (-130.9 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:23:01.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 7, negNoise = 6
17-03-17 18:23:01.988 -07 000000610 INF: Z Motor: After move to -0.131760, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:01.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:23:01.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:01.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:01.988 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:01.988 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:01.988 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:01.988 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:01.988 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:01.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:01.988 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:23:01.988 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:01.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:01.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:01.998 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:01.998 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:01.998 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:01.998 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:01.998 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:23:01.998 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:23:02.008 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:23:02.008 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:23:02.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28959 150\n [Camera]
17-03-17 18:23:02.208 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:02.338 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.007176,
17-03-17 18:23:02.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:02.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:02.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:02.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:02.598 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:02.598 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:02.608 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:02.618 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:02.618 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:02.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:02.788 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28959 777
17-03-17 18:23:02.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:02.988 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:23:02.988 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:23:02.988 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:02.988 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:02.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:23:02.998 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:23:02.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:02.998 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:23:02.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:02.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:23:03.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:03.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:03.128 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:03.128 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:03.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:03.128 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:03.138 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:03.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:23:03.138 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:03.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:23:03.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:23:03.318 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:03.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28959 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:23:03.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:03.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131771298047753. ------
17-03-17 18:23:03.448 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:03.448 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13826 mm
17-03-17 18:23:03.448 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:03.448 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:03.448 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30202, sync = True, waitForSettling = False)
17-03-17 18:23:03.448 -07 000000448 INF: Z Motor: Moving to -0.138256 mm, started at -0.131771 mm, distance = -6.48 um
17-03-17 18:23:03.448 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:23:03.448 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:23:03.458 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:03.458 -07 000000448 INF: FPGA: Xmit ZDACW 30202\n [Z Motor]
17-03-17 18:23:03.458 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:23:03.468 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:03.468 -07 000000448 INF: FPGA: 'ZDACW 30202' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:23:03.468 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:23:03.478 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:03.478 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:23:03.478 -07 000000569 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:03.478 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:03.478 -07 000000569 INF: Y Motor: Moving 1336 steps-10
17-03-17 18:23:03.488 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:03.488 -07 000000415 INF: FPGA: Recv ZDACR 30202
17-03-17 18:23:03.498 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:03.498 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:03.498 -07 000000448 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:23:03.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:23:03.518 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:23:03.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:03.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:23:03.518 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:23:03.518 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:03.528 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:03.528 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:23:03.528 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:03.538 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:23:03.678 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:03.678 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 18:23:03.868 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:23:03.868 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:23:03.898 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:03.908 -07 000000593 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:23:03.908 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:23:03.908 -07 000000569 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:03.908 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:23:03.908 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 18:23:04.858 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:04.858 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:23:04.868 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.868 -07 000000569 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:04.878 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:04.888 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:04.888 -07 000000569 INF: Y Motor: Moved to 64.8794 after 1433 ms (table move)
17-03-17 18:23:04.888 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138256 mm (DAC = 30202)
17-03-17 18:23:04.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.888 -07 000000448 INF: FPGA: Recv ZSGSRD 30809
17-03-17 18:23:04.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:04.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.898 -07 000000569 INF: FPGA: Recv ZSGSRD 30802
17-03-17 18:23:04.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.908 -07 000000462 INF: FPGA: Recv ZSGSRD 30814
17-03-17 18:23:04.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.918 -07 000000512 INF: FPGA: Recv ZSGSRD 30811
17-03-17 18:23:04.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.928 -07 000000512 INF: FPGA: Recv ZSGSRD 30815
17-03-17 18:23:04.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.938 -07 000000569 INF: FPGA: Recv ZSGSRD 30820
17-03-17 18:23:04.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.948 -07 000000593 INF: FPGA: Recv ZSGSRD 30817
17-03-17 18:23:04.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.958 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.958 -07 000000462 INF: FPGA: Recv ZSGSRD 30821
17-03-17 18:23:04.968 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.968 -07 000000569 INF: FPGA: Recv ZSGSRD 30806
17-03-17 18:23:04.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:04.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30810
17-03-17 18:23:04.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.988 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:04.988 -07 000000429 INF: FPGA: Recv ZPIEZORD 26699
17-03-17 18:23:04.998 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:04.998 -07 000000547 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -9.0 V.
17-03-17 18:23:04.998 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30812 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30802 (-137.4 uncal um), Max = 30821 (-137.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:23:04.998 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30812, posNoise = 9, negNoise = 10
17-03-17 18:23:04.998 -07 000000547 INF: Z Motor: After move to -0.138256, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:04.998 -07 000000547 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:23:04.998 -07 000000547 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:05.048 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:23:05.048 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:05.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:05.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:05.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:05.058 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:05.058 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:05.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:05.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:05.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:05.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:05.058 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:05.068 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:23:05.068 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:23:05.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:05.118 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:05.318 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:05.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:05.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:05.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:05.358 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:05.358 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:05.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:23:05.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:23:05.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:05.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:05.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:23:05.458 -07 000000462 INF: Autofocus start
17-03-17 18:23:05.458 -07 000000462 INF: MeasureProfile start
17-03-17 18:23:05.458 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:05.468 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:05.468 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:05.468 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:05.468 -07 000000462 INF: MeasureProfile done
17-03-17 18:23:05.468 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:23:05.468 -07 000000462 INF: Autofocus finished
17-03-17 18:23:05.668 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:05.668 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:23:05.668 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138266176523074. ----------
17-03-17 18:23:05.678 -07 000000610 INF: Cycle	12	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:05.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28710, sync = True, waitForSettling = True)
17-03-17 18:23:05.678 -07 000000610 INF: Z Motor: Moving to -0.131426 mm, started at -0.138266 mm, distance = 6.84 um
17-03-17 18:23:05.678 -07 000000610 INF: FPGA: Xmit ZDACW 28710\n [Z Motor]
17-03-17 18:23:05.678 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:23:05.688 -07 000000610 INF: FPGA: 'ZDACW 28710' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:05.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:05.688 -07 000000547 INF: FPGA: Recv ZDACR 28710
17-03-17 18:23:05.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.848 -07 000000593 INF: FPGA: Recv ZSGSRD 29748
17-03-17 18:23:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.858 -07 000000462 INF: FPGA: Recv ZSGSRD 29745
17-03-17 18:23:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.868 -07 000000547 INF: FPGA: Recv ZSGSRD 29747
17-03-17 18:23:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.878 -07 000000593 INF: FPGA: Recv ZSGSRD 29745
17-03-17 18:23:05.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.888 -07 000000415 INF: FPGA: Recv ZSGSRD 29754
17-03-17 18:23:05.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.898 -07 000000593 INF: FPGA: Recv ZSGSRD 29745
17-03-17 18:23:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.908 -07 000000462 INF: FPGA: Recv ZSGSRD 29746
17-03-17 18:23:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.918 -07 000000415 INF: FPGA: Recv ZSGSRD 29752
17-03-17 18:23:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.928 -07 000000547 INF: FPGA: Recv ZSGSRD 29750
17-03-17 18:23:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:05.938 -07 000000547 INF: FPGA: Recv ZSGSRD 29744
17-03-17 18:23:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:05.948 -07 000000462 INF: FPGA: Recv ZPIEZORD 25269
17-03-17 18:23:05.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:05.958 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.8 V.
17-03-17 18:23:05.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29748 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29746 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29744 (-130.6 uncal um), Max = 29754 (-130.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:23:05.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29748, posNoise = 6, negNoise = 4
17-03-17 18:23:05.958 -07 000000610 INF: Z Motor: After move to -0.131426, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:05.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:23:05.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:05.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:05.958 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:05.958 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:05.958 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:05.958 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:05.958 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:05.958 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:05.958 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:05.958 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:05.958 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:05.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:05.958 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:05.958 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:05.968 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:05.968 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:05.978 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:23:05.978 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:23:05.978 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:23:05.978 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:23:05.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28886 150\n [Camera]
17-03-17 18:23:06.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:06.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:06.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:06.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:06.578 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:06.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:06.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:06.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:06.578 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:06.588 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:06.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:06.588 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:06.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:06.768 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28886 777
17-03-17 18:23:06.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:06.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:23:06.968 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:23:06.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:06.968 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:23:06.968 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:23:06.968 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:06.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:06.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:23:06.968 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:06.978 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:23:07.108 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:07.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:07.108 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:07.108 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:07.108 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:23:07.108 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:07.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:07.108 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:07.108 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:07.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:23:07.298 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:07.298 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:07.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28886 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:23:07.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:07.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.13143081480424. ------
17-03-17 18:23:07.308 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13799 mm
17-03-17 18:23:07.308 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:07.308 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:07.308 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:23:07.308 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:23:07.308 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30143, sync = True, waitForSettling = False)
17-03-17 18:23:07.308 -07 000000475 INF: Z Motor: Moving to -0.137986 mm, started at -0.131431 mm, distance = -6.55 um
17-03-17 18:23:07.308 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:07.318 -07 000000475 INF: FPGA: Xmit ZDACW 30143\n [Z Motor]
17-03-17 18:23:07.318 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:07.318 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:23:07.328 -07 000000475 INF: FPGA: 'ZDACW 30143' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:23:07.328 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:07.328 -07 000000593 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:23:07.338 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:07.338 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:23:07.338 -07 000000438 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:07.338 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:07.338 -07 000000438 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:23:07.348 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:07.348 -07 000000623 INF: FPGA: Recv ZDACR 30143
17-03-17 18:23:07.358 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:07.358 -07 000000475 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:23:07.358 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:07.488 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:23:07.488 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:23:07.488 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:07.498 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:07.498 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:23:07.498 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:23:07.498 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:07.508 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:23:07.508 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:23:07.508 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:23:07.538 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:07.538 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:23:07.698 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.001704,
17-03-17 18:23:07.728 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:23:07.728 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:23:07.768 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:07.768 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:23:07.778 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:07.778 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:07.778 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:23:07.778 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 18:23:08.728 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:08.728 -07 000000476 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:23:08.738 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:08.738 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:08.758 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:08.758 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:08.758 -07 000000438 INF: Y Motor: Moved to 65.7148 after 1443 ms (table move)
17-03-17 18:23:08.758 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137986 mm (DAC = 30143)
17-03-17 18:23:08.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:23:08.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 18:23:08.768 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.768 -07 000000438 INF: FPGA: Recv ZSGSRD 30764
17-03-17 18:23:08.778 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:08.778 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.778 -07 000000438 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:23:08.788 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.788 -07 000000480 INF: FPGA: Recv ZSGSRD 30771
17-03-17 18:23:08.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.798 -07 000000480 INF: FPGA: Recv ZSGSRD 30772
17-03-17 18:23:08.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.808 -07 000000438 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:23:08.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.818 -07 000000438 INF: FPGA: Recv ZSGSRD 30768
17-03-17 18:23:08.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.828 -07 000000415 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:23:08.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.838 -07 000000415 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:23:08.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:08.848 -07 000000415 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:23:08.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.858 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:08.858 -07 000000438 INF: FPGA: Recv ZPIEZORD 26621
17-03-17 18:23:08.868 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:08.868 -07 000000547 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -9.1 V.
17-03-17 18:23:08.868 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30768 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30768 (-137.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30764 (-137.2 uncal um), Max = 30772 (-137.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:23:08.868 -07 000000547 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30768, posNoise = 4, negNoise = 4
17-03-17 18:23:08.868 -07 000000547 INF: Z Motor: After move to -0.137986, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:08.868 -07 000000547 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:23:08.868 -07 000000547 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:08.918 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:23:08.918 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:08.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:08.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:08.918 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:08.918 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:08.918 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:08.918 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:08.918 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:08.918 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:08.928 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:08.928 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:08.938 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:23:08.938 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:23:08.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:08.988 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:09.188 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:09.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:09.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:09.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:23:09.228 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:09.228 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:09.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:23:09.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:23:09.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:09.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:23:09.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 18:23:09.428 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:09.428 -07 000000462 INF: Autofocus start
17-03-17 18:23:09.428 -07 000000462 INF: MeasureProfile start
17-03-17 18:23:09.428 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:09.438 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:09.438 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:09.438 -07 000000462 INF: MeasureProfile done
17-03-17 18:23:09.438 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:23:09.438 -07 000000462 INF: Autofocus finished
17-03-17 18:23:09.638 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:09.638 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:09.638 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.137983511188836. ----------
17-03-17 18:23:09.638 -07 000000610 INF: Cycle	12	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:09.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28667, sync = True, waitForSettling = True)
17-03-17 18:23:09.648 -07 000000610 INF: Z Motor: Moving to -0.131229 mm, started at -0.137984 mm, distance = 6.75 um
17-03-17 18:23:09.648 -07 000000610 INF: FPGA: Xmit ZDACW 28667\n [Z Motor]
17-03-17 18:23:09.648 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:23:09.658 -07 000000610 INF: FPGA: 'ZDACW 28667' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:09.658 -07 000000462 INF: FPGA: Recv ZDACR 28667
17-03-17 18:23:09.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.818 -07 000000593 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:23:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.828 -07 000000462 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:23:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.838 -07 000000561 INF: FPGA: Recv ZSGSRD 29720
17-03-17 18:23:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:23:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.858 -07 000000462 INF: FPGA: Recv ZSGSRD 29713
17-03-17 18:23:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.868 -07 000000593 INF: FPGA: Recv ZSGSRD 29714
17-03-17 18:23:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.878 -07 000000593 INF: FPGA: Recv ZSGSRD 29724
17-03-17 18:23:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.898 -07 000000593 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:23:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.908 -07 000000593 INF: FPGA: Recv ZSGSRD 29718
17-03-17 18:23:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:09.928 -07 000000462 INF: FPGA: Recv ZSGSRD 29724
17-03-17 18:23:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:09.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:09.938 -07 000000593 INF: FPGA: Recv ZPIEZORD 25258
17-03-17 18:23:09.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:09.948 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.8 V.
17-03-17 18:23:09.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29717 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29715 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29713 (-130.4 uncal um), Max = 29724 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:23:09.948 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29717, posNoise = 7, negNoise = 4
17-03-17 18:23:09.948 -07 000000610 INF: Z Motor: After move to -0.131229, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:09.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-17 18:23:09.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:09.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:09.948 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:09.948 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:09.948 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:09.948 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:09.948 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:09.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:09.948 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:09.948 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:09.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:09.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:09.958 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:09.958 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:09.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:09.958 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:09.968 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:23:09.968 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:23:09.968 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:23:09.968 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:23:09.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28844 150\n [Camera]
17-03-17 18:23:10.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:10.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:23:10.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:23:10.568 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:10.568 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:10.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:23:10.568 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:23:10.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:23:10.568 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:10.568 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:10.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:23:10.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28844 777
17-03-17 18:23:10.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:10.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:23:10.948 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:23:10.948 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:10.948 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:23:10.948 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:23:10.948 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:10.948 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:10.948 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:23:10.958 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:10.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:23:11.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:11.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:11.098 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:11.098 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:11.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:23:11.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:11.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:11.098 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:11.098 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:11.098 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:23:11.288 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:23:11.288 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:11.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28844 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-17 18:23:11.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:11.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131231664227845. ------
17-03-17 18:23:11.298 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:11.298 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13766 mm
17-03-17 18:23:11.298 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:11.298 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:23:11.298 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:23:11.298 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:11.298 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30072, sync = True, waitForSettling = False)
17-03-17 18:23:11.298 -07 000000478 INF: Z Motor: Moving to -0.137661 mm, started at -0.131232 mm, distance = -6.43 um
17-03-17 18:23:11.308 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:11.308 -07 000000478 INF: FPGA: Xmit ZDACW 30072\n [Z Motor]
17-03-17 18:23:11.308 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:23:11.318 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:11.318 -07 000000478 INF: FPGA: 'ZDACW 30072' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:23:11.318 -07 000000476 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:23:11.328 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:11.328 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:23:11.328 -07 000000382 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:11.328 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:11.328 -07 000000382 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:23:11.338 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:11.338 -07 000000476 INF: FPGA: Recv ZDACR 30072
17-03-17 18:23:11.348 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:11.348 -07 000000478 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:23:11.348 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:11.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:23:11.498 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:23:11.498 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:11.498 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:11.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:23:11.528 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:11.528 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:23:11.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:11.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:11.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 510 ms.
17-03-17 18:23:11.608 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 18:23:11.608 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:11.618 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:11.618 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 18:23:11.718 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:23:11.718 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 18:23:11.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:11.758 -07 000000623 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:23:11.768 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:11.768 -07 000000382 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:11.768 -07 000000382 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:23:11.768 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.105 mm/sec
17-03-17 18:23:12.718 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:12.718 -07 000000448 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:23:12.728 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:12.728 -07 000000382 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:12.748 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:12.748 -07 000000382 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:12.748 -07 000000382 INF: Y Motor: Moved to 66.5396 after 1446 ms (table move)
17-03-17 18:23:12.748 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137661 mm (DAC = 30072)
17-03-17 18:23:12.748 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:12.748 -07 000000448 INF: FPGA: Recv ZSGSRD 30721
17-03-17 18:23:12.758 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:12.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:12.758 -07 000000512 INF: FPGA: Recv ZSGSRD 30714
17-03-17 18:23:12.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:12.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:12.768 -07 000000623 INF: FPGA: Recv ZSGSRD 30715
17-03-17 18:23:12.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:12.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:12.778 -07 000000569 INF: FPGA: Recv ZSGSRD 30718
17-03-17 18:23:12.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:12.788 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:13.748 -07 000000476 INF: FPGA: Recv ZSGSRD 30734
17-03-17 18:23:13.748 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 950 ms to get response, and 960 ms overall
17-03-17 18:23:13.748 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:13.748 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.973092,
17-03-17 18:23:13.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30729
17-03-17 18:23:13.758 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:13.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:13.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30724
17-03-17 18:23:13.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:13.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:13.778 -07 000000569 INF: FPGA: Recv ZSGSRD 30718
17-03-17 18:23:13.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:13.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:13.808 -07 000000623 INF: FPGA: Recv ZSGSRD 30722
17-03-17 18:23:13.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:13.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:13.828 -07 000000569 INF: FPGA: Recv ZSGSRD 30718
17-03-17 18:23:13.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:13.838 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:13.838 -07 000000623 INF: FPGA: Recv ZPIEZORD 26583
17-03-17 18:23:13.848 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:13.848 -07 000000593 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.1 V.
17-03-17 18:23:13.848 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30721 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30720 (-136.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30714 (-136.8 uncal um), Max = 30734 (-137.0 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:13.848 -07 000000593 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30721, posNoise = 13, negNoise = 7
17-03-17 18:23:13.848 -07 000000593 INF: Z Motor: After move to -0.137661, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:13.848 -07 000000593 INF: Z Motor: Settle wait time = 1448 ms, measure time = 1096 ms (allowed 150 ms), total time = 2544 ms
17-03-17 18:23:13.848 -07 000000593 INF: Z Motor: Warning: Actual position measuring time = 1096 ms, longer than max expected time of 150 ms
17-03-17 18:23:13.848 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2548 ms
17-03-17 18:23:13.848 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:13.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:13.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:13.848 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:13.848 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:13.848 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:13.848 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:13.858 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:13.858 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:13.858 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:13.858 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:13.868 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:23:13.868 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:23:13.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:13.918 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:14.118 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:14.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:14.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:14.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:14.158 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:14.158 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:14.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:23:14.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:23:14.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:14.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:14.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:23:14.258 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:14.258 -07 000000382 INF: Autofocus start
17-03-17 18:23:14.258 -07 000000382 INF: MeasureProfile start
17-03-17 18:23:14.258 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:14.268 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:14.268 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:14.268 -07 000000382 INF: MeasureProfile done
17-03-17 18:23:14.268 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:23:14.268 -07 000000382 INF: Autofocus finished
17-03-17 18:23:14.468 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:14.468 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:14.468 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137681573218173. ----------
17-03-17 18:23:14.468 -07 000000610 INF: Cycle	12	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:14.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28566, sync = True, waitForSettling = True)
17-03-17 18:23:14.478 -07 000000610 INF: Z Motor: Moving to -0.130767 mm, started at -0.137682 mm, distance = 6.91 um
17-03-17 18:23:14.478 -07 000000610 INF: FPGA: Xmit ZDACW 28566\n [Z Motor]
17-03-17 18:23:14.478 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:23:14.488 -07 000000610 INF: FPGA: 'ZDACW 28566' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:14.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:14.488 -07 000000448 INF: FPGA: Recv ZDACR 28566
17-03-17 18:23:14.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29649
17-03-17 18:23:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:23:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.668 -07 000000475 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:23:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29641
17-03-17 18:23:14.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.688 -07 000000475 INF: FPGA: Recv ZSGSRD 29648
17-03-17 18:23:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.698 -07 000000475 INF: FPGA: Recv ZSGSRD 29645
17-03-17 18:23:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.708 -07 000000475 INF: FPGA: Recv ZSGSRD 29641
17-03-17 18:23:14.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.718 -07 000000623 INF: FPGA: Recv ZSGSRD 29650
17-03-17 18:23:14.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29643
17-03-17 18:23:14.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:14.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29643
17-03-17 18:23:14.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:14.748 -07 000000475 INF: FPGA: Recv ZPIEZORD 25185
17-03-17 18:23:14.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:14.758 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.8 V.
17-03-17 18:23:14.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29645 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29644 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29641 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:23:14.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29645, posNoise = 5, negNoise = 4
17-03-17 18:23:14.758 -07 000000610 INF: Z Motor: After move to -0.130767, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:14.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:23:14.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:14.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:14.758 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:14.758 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:14.758 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:14.758 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:14.758 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:14.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:14.758 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:14.758 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:14.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:14.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:14.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:14.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:14.768 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:14.768 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:14.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:23:14.768 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:23:14.778 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:23:14.778 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:23:14.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28743 150\n [Camera]
17-03-17 18:23:14.988 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:23:15.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:15.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:15.378 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:15.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:15.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:15.378 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:15.378 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:15.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:15.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:15.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:15.568 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28743 777
17-03-17 18:23:15.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:15.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:23:15.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:23:15.778 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:15.778 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:23:15.778 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:23:15.778 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:15.778 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:15.778 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:23:15.778 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:15.788 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:23:15.898 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:15.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:15.898 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:15.908 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:15.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:15.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:15.908 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:15.908 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:23:15.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:15.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:23:16.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:16.098 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:16.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28743 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:23:16.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:16.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130769120953639. ------
17-03-17 18:23:16.098 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:16.098 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13752 mm
17-03-17 18:23:16.218 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:16.218 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:16.218 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 18:23:16.218 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:16.218 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:23:16.218 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 18:23:16.218 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30042, sync = True, waitForSettling = False)
17-03-17 18:23:16.218 -07 000000462 INF: Z Motor: Moving to -0.137523 mm, started at -0.130769 mm, distance = -6.75 um
17-03-17 18:23:16.228 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:16.228 -07 000000415 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:23:16.238 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:23:16.238 -07 000000623 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:16.238 -07 000000462 INF: FPGA: Xmit ZDACW 30042\n [Z Motor]
17-03-17 18:23:16.238 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:23:16.238 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:16.238 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:23:16.248 -07 000000462 INF: FPGA: 'ZDACW 30042' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:23:16.248 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:16.248 -07 000000415 INF: FPGA: Recv ZDACR 30042
17-03-17 18:23:16.258 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:16.258 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:16.258 -07 000000462 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 18:23:16.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:23:16.298 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:23:16.298 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:16.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:23:16.298 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:23:16.298 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:16.298 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:16.298 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:23:16.308 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:16.308 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:23:16.418 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:16.418 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:23:16.588 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:16.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:16.628 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:23:16.628 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:23:16.668 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:16.668 -07 000000462 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:23:16.678 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:16.678 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:16.678 -07 000000623 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:23:16.678 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 18:23:17.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:17.628 -07 000000480 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:23:17.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.638 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:17.658 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:17.658 -07 000000623 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:17.658 -07 000000623 INF: Y Motor: Moved to 67.3726 after 1441 ms (table move)
17-03-17 18:23:17.668 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137523 mm (DAC = 30042)
17-03-17 18:23:17.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.668 -07 000000561 INF: FPGA: Recv ZSGSRD 30702
17-03-17 18:23:17.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:17.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.678 -07 000000415 INF: FPGA: Recv ZSGSRD 30693
17-03-17 18:23:17.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.688 -07 000000476 INF: FPGA: Recv ZSGSRD 30698
17-03-17 18:23:17.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.698 -07 000000429 INF: FPGA: Recv ZSGSRD 30692
17-03-17 18:23:17.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.708 -07 000000476 INF: FPGA: Recv ZSGSRD 30698
17-03-17 18:23:17.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.718 -07 000000608 INF: FPGA: Recv ZSGSRD 30700
17-03-17 18:23:17.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.728 -07 000000608 INF: FPGA: Recv ZSGSRD 30696
17-03-17 18:23:17.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.738 -07 000000608 INF: FPGA: Recv ZSGSRD 30696
17-03-17 18:23:17.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.748 -07 000000608 INF: FPGA: Recv ZSGSRD 30691
17-03-17 18:23:17.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:17.758 -07 000000608 INF: FPGA: Recv ZSGSRD 30701
17-03-17 18:23:17.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.768 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:17.768 -07 000000608 INF: FPGA: Recv ZPIEZORD 26583
17-03-17 18:23:17.778 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:17.778 -07 000000475 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.1 V.
17-03-17 18:23:17.778 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30697 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30697 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30691 (-136.7 uncal um), Max = 30702 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:23:17.778 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30697, posNoise = 5, negNoise = 6
17-03-17 18:23:17.778 -07 000000475 INF: Z Motor: After move to -0.137523, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:17.778 -07 000000475 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:23:17.778 -07 000000475 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:17.828 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-17 18:23:17.828 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:17.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:17.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:17.828 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:17.828 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:17.828 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:17.828 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:17.828 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:17.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:17.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:17.838 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:17.848 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:23:17.848 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:23:17.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:17.898 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:18.098 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:18.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:18.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:18.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:18.138 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:18.138 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:18.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:23:18.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:23:18.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:18.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:18.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:23:18.238 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:18.238 -07 000000475 INF: Autofocus start
17-03-17 18:23:18.238 -07 000000475 INF: MeasureProfile start
17-03-17 18:23:18.248 -07 000000475 INF: MeasureProfile done
17-03-17 18:23:18.248 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:23:18.248 -07 000000475 INF: Autofocus finished
17-03-17 18:23:18.248 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:18.248 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 15 ms overall
17-03-17 18:23:18.248 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:18.458 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:18.458 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 18:23:18.458 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137527392126771. ----------
17-03-17 18:23:18.458 -07 000000610 INF: Cycle	12	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:18.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28566, sync = True, waitForSettling = True)
17-03-17 18:23:18.458 -07 000000610 INF: Z Motor: Moving to -0.130767 mm, started at -0.137527 mm, distance = 6.76 um
17-03-17 18:23:18.458 -07 000000610 INF: FPGA: Xmit ZDACW 28566\n [Z Motor]
17-03-17 18:23:18.468 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:23:18.468 -07 000000610 INF: FPGA: 'ZDACW 28566' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 18:23:18.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:18.468 -07 000000608 INF: FPGA: Recv ZDACR 28566
17-03-17 18:23:18.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:18.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:18.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.628 -07 000000475 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:23:18.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:18.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.638 -07 000000475 INF: FPGA: Recv ZSGSRD 29649
17-03-17 18:23:18.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.648 -07 000000475 INF: FPGA: Recv ZSGSRD 29649
17-03-17 18:23:18.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:23:18.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.668 -07 000000475 INF: FPGA: Recv ZSGSRD 29645
17-03-17 18:23:18.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.678 -07 000000475 INF: FPGA: Recv ZSGSRD 29642
17-03-17 18:23:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29647
17-03-17 18:23:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.698 -07 000000512 INF: FPGA: Recv ZSGSRD 29645
17-03-17 18:23:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.708 -07 000000608 INF: FPGA: Recv ZSGSRD 29645
17-03-17 18:23:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:18.718 -07 000000608 INF: FPGA: Recv ZSGSRD 29648
17-03-17 18:23:18.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:18.728 -07 000000475 INF: FPGA: Recv ZPIEZORD 25221
17-03-17 18:23:18.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:18.738 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.7 V.
17-03-17 18:23:18.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29646 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29645 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29642 (-130.0 uncal um), Max = 29649 (-130.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:23:18.738 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29646, posNoise = 3, negNoise = 4
17-03-17 18:23:18.738 -07 000000610 INF: Z Motor: After move to -0.130767, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:18.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-17 18:23:18.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:18.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:18.738 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:18.738 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:18.738 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:18.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:18.738 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:18.738 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:18.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:18.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:18.738 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:18.738 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:18.748 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:23:18.748 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:18.748 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:18.748 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:18.758 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:23:18.758 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:23:18.758 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:23:18.758 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:23:18.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28743 150\n [Camera]
17-03-17 18:23:18.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:19.148 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.963579,
17-03-17 18:23:19.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:19.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:19.348 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:19.348 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:19.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:19.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:19.348 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:19.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:19.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:19.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:19.538 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28743 777
17-03-17 18:23:19.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:19.748 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:23:19.748 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:23:19.748 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:19.748 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:19.748 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:23:19.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:23:19.748 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:23:19.748 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:19.758 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:19.768 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:23:19.878 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:19.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:19.878 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:19.878 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:19.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:23:19.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:19.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:19.888 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:19.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:19.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:23:20.068 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:20.068 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:20.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28743 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 18:23:20.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:20.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.13077554516578. ------
17-03-17 18:23:20.078 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:20.078 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13672 mm
17-03-17 18:23:20.078 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:20.078 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:23:20.078 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29868, sync = True, waitForSettling = False)
17-03-17 18:23:20.078 -07 000000608 INF: Z Motor: Moving to -0.136727 mm, started at -0.130776 mm, distance = -5.95 um
17-03-17 18:23:20.078 -07 000000475 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:23:20.088 -07 000000608 INF: FPGA: Xmit ZDACW 29868\n [Z Motor]
17-03-17 18:23:20.088 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:20.088 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 18:23:20.088 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:23:20.098 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:20.098 -07 000000608 INF: FPGA: 'ZDACW 29868' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:23:20.098 -07 000000478 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:23:20.108 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:20.108 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:23:20.108 -07 000000475 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:20.108 -07 000000475 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:20.108 -07 000000475 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:23:20.118 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:20.118 -07 000000478 INF: FPGA: Recv ZDACR 29868
17-03-17 18:23:20.128 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:20.128 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:20.128 -07 000000608 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:23:20.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:23:20.278 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:23:20.278 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:20.278 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:23:20.278 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:23:20.278 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:20.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:20.278 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:23:20.278 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:23:20.288 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:23:20.308 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:20.308 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 18:23:21.248 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:23:21.248 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1110 ms to get response, and 1136 ms overall
17-03-17 18:23:21.278 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:21.278 -07 000000608 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:23:21.288 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:21.288 -07 000000475 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:21.288 -07 000000475 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:23:21.288 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1136 ms, distance = 0.840 mm, average velocity = 0.739 mm/sec
17-03-17 18:23:21.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:22.238 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:22.238 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:23:22.248 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.248 -07 000000475 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:22.258 -07 000000475 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:22.258 -07 000000475 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:22.258 -07 000000475 INF: Y Motor: Moved to 68.2056 after 2180 ms (table move)
17-03-17 18:23:22.268 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136727 mm (DAC = 29868)
17-03-17 18:23:22.268 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.268 -07 000000569 INF: FPGA: Recv ZSGSRD 30573
17-03-17 18:23:22.278 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:22.278 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.278 -07 000000475 INF: FPGA: Recv ZSGSRD 30572
17-03-17 18:23:22.288 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.288 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.288 -07 000000569 INF: FPGA: Recv ZSGSRD 30576
17-03-17 18:23:22.298 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.298 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.298 -07 000000475 INF: FPGA: Recv ZSGSRD 30570
17-03-17 18:23:22.308 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.308 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.308 -07 000000608 INF: FPGA: Recv ZSGSRD 30570
17-03-17 18:23:22.318 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.318 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.318 -07 000000569 INF: FPGA: Recv ZSGSRD 30571
17-03-17 18:23:22.328 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.328 -07 000000608 INF: FPGA: Recv ZSGSRD 30574
17-03-17 18:23:22.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.338 -07 000000569 INF: FPGA: Recv ZSGSRD 30574
17-03-17 18:23:22.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30571
17-03-17 18:23:22.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:22.358 -07 000000475 INF: FPGA: Recv ZSGSRD 30573
17-03-17 18:23:22.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.368 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:22.368 -07 000000623 INF: FPGA: Recv ZPIEZORD 26425
17-03-17 18:23:22.378 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:22.378 -07 000000593 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.1 V.
17-03-17 18:23:22.378 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30572 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30572 (-135.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30570 (-135.9 uncal um), Max = 30576 (-136.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:23:22.378 -07 000000593 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30572, posNoise = 4, negNoise = 2
17-03-17 18:23:22.378 -07 000000593 INF: Z Motor: After move to -0.136727, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:22.378 -07 000000593 INF: Z Motor: Settle wait time = 2183 ms, measure time = 111 ms (allowed 150 ms), total time = 2294 ms
17-03-17 18:23:22.378 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:22.418 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2334 ms
17-03-17 18:23:22.418 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:22.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:22.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:22.418 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:22.418 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:22.418 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:22.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:22.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:22.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:22.428 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:22.428 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:22.438 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:23:22.438 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:23:22.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:22.488 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:22.688 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:22.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:22.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:22.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:23:22.718 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:22.728 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:22.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:23:22.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:23:22.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:22.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:23:22.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:23:22.828 -07 000000623 INF: Autofocus start
17-03-17 18:23:22.828 -07 000000623 INF: MeasureProfile start
17-03-17 18:23:22.828 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:22.828 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:22.838 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:22.838 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:22.838 -07 000000623 INF: MeasureProfile done
17-03-17 18:23:22.838 -07 000000623 INF: X=96  Z correction [um]=0.437849
17-03-17 18:23:22.838 -07 000000623 INF: Autofocus finished
17-03-17 18:23:23.038 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:23.038 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:23.038 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136724365609051. ----------
17-03-17 18:23:23.038 -07 000000610 INF: Cycle	12	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:23.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28476, sync = True, waitForSettling = True)
17-03-17 18:23:23.048 -07 000000610 INF: Z Motor: Moving to -0.130355 mm, started at -0.136724 mm, distance = 6.37 um
17-03-17 18:23:23.048 -07 000000610 INF: FPGA: Xmit ZDACW 28476\n [Z Motor]
17-03-17 18:23:23.048 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:23:23.058 -07 000000610 INF: FPGA: 'ZDACW 28476' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:23.058 -07 000000623 INF: FPGA: Recv ZDACR 28476
17-03-17 18:23:23.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29589
17-03-17 18:23:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29586
17-03-17 18:23:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.238 -07 000000547 INF: FPGA: Recv ZSGSRD 29582
17-03-17 18:23:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29581
17-03-17 18:23:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29583
17-03-17 18:23:23.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.268 -07 000000569 INF: FPGA: Recv ZSGSRD 29577
17-03-17 18:23:23.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 14 ms to get response, and 24 ms overall
17-03-17 18:23:23.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.288 -07 000000608 INF: FPGA: Recv ZSGSRD 29584
17-03-17 18:23:23.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:23.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.298 -07 000000593 INF: FPGA: Recv ZSGSRD 29583
17-03-17 18:23:23.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29575
17-03-17 18:23:23.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:23.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29580
17-03-17 18:23:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:23.328 -07 000000475 INF: FPGA: Recv ZPIEZORD 25121
17-03-17 18:23:23.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:23.338 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.8 V.
17-03-17 18:23:23.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29582 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29575 (-129.5 uncal um), Max = 29589 (-129.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:23.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29582, posNoise = 7, negNoise = 7
17-03-17 18:23:23.338 -07 000000610 INF: Z Motor: After move to -0.130355, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:23.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 18:23:23.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:23.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:23.338 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:23.338 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:23.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:23.338 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:23.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:23.338 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:23.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:23.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:23.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:23.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:23.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:23.348 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:23.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:23.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:23.358 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:23:23.358 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:23:23.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:23:23.358 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:23:23.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28652 150\n [Camera]
17-03-17 18:23:23.568 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:23.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:23.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:23.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:23.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:23.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:23:23.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:23.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:23.958 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:23.958 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:23.958 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:23:24.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28652 777
17-03-17 18:23:24.298 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:24.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:23:24.338 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:23:24.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:24.338 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:23:24.338 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:23:24.338 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:24.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:24.338 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:23:24.338 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:24.348 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:23:24.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:23:24.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:23:24.488 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:24.488 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:24.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:23:24.488 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:23:24.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:23:24.488 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:24.488 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:24.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:23:24.508 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.018051,
17-03-17 18:23:24.678 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:23:24.678 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:24.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28652 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-17 18:23:24.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:24.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130364395588708. ------
17-03-17 18:23:24.688 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13701 mm
17-03-17 18:23:24.688 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:24.688 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:24.688 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:23:24.688 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29930, sync = True, waitForSettling = False)
17-03-17 18:23:24.688 -07 000000475 INF: Z Motor: Moving to -0.137011 mm, started at -0.130364 mm, distance = -6.65 um
17-03-17 18:23:24.688 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:23:24.688 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:24.698 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:24.698 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:24.698 -07 000000476 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:23:24.708 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:23:24.708 -07 000000382 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:24.708 -07 000000475 INF: FPGA: Xmit ZDACW 29930\n [Z Motor]
17-03-17 18:23:24.708 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:23:24.708 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:24.708 -07 000000382 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:23:24.718 -07 000000475 INF: FPGA: 'ZDACW 29930' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:23:24.718 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:24.728 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:24.738 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:24.738 -07 000000593 INF: FPGA: Recv ZDACR 29930
17-03-17 18:23:24.748 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:24.748 -07 000000475 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:23:24.888 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:23:24.888 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:23:24.888 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:24.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:23:24.888 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:23:24.888 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:24.888 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:24.898 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:23:24.898 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:23:24.898 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:23:24.918 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:24.918 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:23:25.098 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:23:25.098 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:23:25.138 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:25.138 -07 000000475 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:23:25.148 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:25.148 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:25.148 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:23:25.148 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 18:23:26.098 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:26.098 -07 000000569 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:23:26.108 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:26.108 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:26.138 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:26.138 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:26.138 -07 000000382 INF: Y Motor: Moved to 69.0278 after 1449 ms (table move)
17-03-17 18:23:26.138 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137011 mm (DAC = 29930)
17-03-17 18:23:26.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.148 -07 000000547 INF: FPGA: Recv ZSGSRD 30619
17-03-17 18:23:26.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:23:26.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30618
17-03-17 18:23:26.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.158 -07 000000608 INF: FPGA: Recv ZSGSRD 30621
17-03-17 18:23:26.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30618
17-03-17 18:23:26.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.178 -07 000000547 INF: FPGA: Recv ZSGSRD 30620
17-03-17 18:23:26.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.188 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30617
17-03-17 18:23:26.198 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.198 -07 000000569 INF: FPGA: Recv ZSGSRD 30611
17-03-17 18:23:26.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.208 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.208 -07 000000476 INF: FPGA: Recv ZSGSRD 30619
17-03-17 18:23:26.218 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30618
17-03-17 18:23:26.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:26.228 -07 000000382 INF: FPGA: Recv ZSGSRD 30616
17-03-17 18:23:26.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.238 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:26.238 -07 000000623 INF: FPGA: Recv ZPIEZORD 26488
17-03-17 18:23:26.248 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:26.248 -07 000000438 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.567 V. Piezo Error = -9.1 V.
17-03-17 18:23:26.248 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30618 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30618 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30611 (-136.2 uncal um), Max = 30621 (-136.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:26.248 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30618, posNoise = 3, negNoise = 7
17-03-17 18:23:26.248 -07 000000438 INF: Z Motor: After move to -0.137011, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:26.248 -07 000000438 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms
17-03-17 18:23:26.248 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:26.298 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 18:23:26.298 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:26.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:26.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:26.298 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:26.298 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:26.298 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:26.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:26.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:26.298 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:26.308 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:26.308 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:26.318 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:23:26.318 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:23:26.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:26.358 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:26.558 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:26.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:26.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:26.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:26.588 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:26.598 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:26.598 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:26.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:23:26.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 18:23:26.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:26.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:26.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 18:23:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:26.698 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:26.698 -07 000000382 INF: Autofocus start
17-03-17 18:23:26.698 -07 000000382 INF: MeasureProfile start
17-03-17 18:23:26.698 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:26.708 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:26.708 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:26.708 -07 000000382 INF: MeasureProfile done
17-03-17 18:23:26.708 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:23:26.708 -07 000000382 INF: Autofocus finished
17-03-17 18:23:26.908 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:26.908 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:23:26.908 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137019879367572. ----------
17-03-17 18:23:26.918 -07 000000610 INF: Cycle	12	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:26.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28425, sync = True, waitForSettling = True)
17-03-17 18:23:26.918 -07 000000610 INF: Z Motor: Moving to -0.130121 mm, started at -0.137020 mm, distance = 6.90 um
17-03-17 18:23:26.938 -07 000000610 INF: FPGA: Xmit ZDACW 28425\n [Z Motor]
17-03-17 18:23:26.938 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:23:26.948 -07 000000610 INF: FPGA: 'ZDACW 28425' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:23:26.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:26.968 -07 000000448 INF: FPGA: Recv ZDACR 28425
17-03-17 18:23:26.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:26.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:27.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29547
17-03-17 18:23:27.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:27.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.138 -07 000000448 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:23:27.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:23:27.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.158 -07 000000438 INF: FPGA: Recv ZSGSRD 29537
17-03-17 18:23:27.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.168 -07 000000448 INF: FPGA: Recv ZSGSRD 29547
17-03-17 18:23:27.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29543
17-03-17 18:23:27.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.188 -07 000000438 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:23:27.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.198 -07 000000448 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:23:27.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29542
17-03-17 18:23:27.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:27.218 -07 000000438 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:23:27.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:27.228 -07 000000382 INF: FPGA: Recv ZPIEZORD 25069
17-03-17 18:23:27.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:27.238 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.8 V.
17-03-17 18:23:27.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29545 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29546 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29549 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:23:27.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29545, posNoise = 4, negNoise = 8
17-03-17 18:23:27.238 -07 000000610 INF: Z Motor: After move to -0.130121, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:27.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 316 ms)
17-03-17 18:23:27.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:27.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:27.238 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:27.238 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:27.238 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:27.238 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:27.238 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:27.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:27.238 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:23:27.238 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:27.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:23:27.238 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:27.248 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:27.248 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:27.248 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:27.248 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:27.258 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:23:27.258 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:23:27.258 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:23:27.258 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:23:27.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28601 150\n [Camera]
17-03-17 18:23:27.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:27.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:27.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:27.848 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:27.848 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:27.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:27.848 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:27.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:27.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:27.858 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:27.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:28.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28601 777
17-03-17 18:23:28.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:28.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:23:28.228 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:23:28.228 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:28.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:28.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:23:28.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:23:28.238 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:28.238 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:28.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:23:28.238 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:23:28.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:28.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:28.378 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:28.378 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:28.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:28.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:28.388 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:28.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:23:28.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:28.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:23:28.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:28.568 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:28.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28601 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 18:23:28.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:28.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130126699739463. ------
17-03-17 18:23:28.578 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:28.578 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13652 mm
17-03-17 18:23:28.578 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:28.578 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29822, sync = True, waitForSettling = False)
17-03-17 18:23:28.578 -07 000000438 INF: Z Motor: Moving to -0.136516 mm, started at -0.130127 mm, distance = -6.39 um
17-03-17 18:23:28.578 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:23:28.578 -07 000000547 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:23:28.578 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:28.588 -07 000000438 INF: FPGA: Xmit ZDACW 29822\n [Z Motor]
17-03-17 18:23:28.588 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:28.708 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:28.708 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:23:28.708 -07 000000438 INF: FPGA: 'ZDACW 29822' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:23:28.708 -07 000000429 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:23:28.718 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:28.718 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 18:23:28.718 -07 000000547 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:28.718 -07 000000547 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:28.718 -07 000000547 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:23:28.728 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:28.728 -07 000000429 INF: FPGA: Recv ZDACR 29822
17-03-17 18:23:28.738 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:23:28.738 -07 000000438 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 18:23:28.738 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:28.778 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:23:28.778 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:23:28.778 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:28.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:23:28.788 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:23:28.788 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:28.788 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:28.788 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:23:28.788 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:28.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:23:28.918 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:28.918 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall
17-03-17 18:23:29.108 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:23:29.108 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:23:29.148 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:29.148 -07 000000512 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:23:29.158 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:29.158 -07 000000547 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:29.158 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:23:29.158 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 18:23:29.978 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.016692,
17-03-17 18:23:30.108 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:30.108 -07 000000448 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:23:30.118 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:30.118 -07 000000547 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:30.138 -07 000000547 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:30.138 -07 000000547 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:23:30.138 -07 000000547 INF: Y Motor: Moved to 69.8643 after 1553 ms (table move)
17-03-17 18:23:30.138 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136516 mm (DAC = 29822)
17-03-17 18:23:30.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.138 -07 000000561 INF: FPGA: Recv ZSGSRD 30536
17-03-17 18:23:30.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:23:30.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.148 -07 000000438 INF: FPGA: Recv ZSGSRD 30539
17-03-17 18:23:30.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.158 -07 000000438 INF: FPGA: Recv ZSGSRD 30539
17-03-17 18:23:30.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30546
17-03-17 18:23:30.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30542
17-03-17 18:23:30.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.188 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.188 -07 000000438 INF: FPGA: Recv ZSGSRD 30538
17-03-17 18:23:30.198 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.198 -07 000000382 INF: FPGA: Recv ZSGSRD 30541
17-03-17 18:23:30.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.208 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30540
17-03-17 18:23:30.218 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.218 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.218 -07 000000382 INF: FPGA: Recv ZSGSRD 30532
17-03-17 18:23:30.228 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:30.228 -07 000000382 INF: FPGA: Recv ZSGSRD 30537
17-03-17 18:23:30.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.238 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:30.238 -07 000000382 INF: FPGA: Recv ZPIEZORD 26421
17-03-17 18:23:30.248 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:30.248 -07 000000462 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.1 V.
17-03-17 18:23:30.248 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30539 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30539 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30532 (-135.7 uncal um), Max = 30546 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:30.248 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30539, posNoise = 7, negNoise = 7
17-03-17 18:23:30.248 -07 000000462 INF: Z Motor: After move to -0.136516, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:30.248 -07 000000462 INF: Z Motor: Settle wait time = 1558 ms, measure time = 105 ms (allowed 150 ms), total time = 1663 ms
17-03-17 18:23:30.248 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:30.298 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 18:23:30.298 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:30.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:30.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:30.298 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:30.298 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:30.308 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:30.308 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:30.308 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:30.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:30.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:30.308 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:30.318 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:23:30.318 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:23:30.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:30.368 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:30.568 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:30.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:30.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:30.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:30.598 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:30.608 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:30.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:23:30.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:23:30.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:30.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:30.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:23:30.708 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:31.248 -07 000000608 INF: Autofocus start
17-03-17 18:23:31.248 -07 000000608 INF: MeasureProfile start
17-03-17 18:23:31.258 -07 000000608 INF: MeasureProfile done
17-03-17 18:23:31.258 -07 000000608 INF: X=13  Z correction [um]=0.03858674
17-03-17 18:23:31.258 -07 000000608 INF: Autofocus finished
17-03-17 18:23:31.258 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:31.258 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 545 ms to get response, and 550 ms overall
17-03-17 18:23:31.258 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:31.458 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:31.458 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 18:23:31.468 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136512366608373. ----------
17-03-17 18:23:31.468 -07 000000610 INF: Cycle	12	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:31.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28343, sync = True, waitForSettling = True)
17-03-17 18:23:31.468 -07 000000610 INF: Z Motor: Moving to -0.129746 mm, started at -0.136512 mm, distance = 6.77 um
17-03-17 18:23:31.468 -07 000000610 INF: FPGA: Xmit ZDACW 28343\n [Z Motor]
17-03-17 18:23:31.478 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:23:31.478 -07 000000610 INF: FPGA: 'ZDACW 28343' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:23:31.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:31.478 -07 000000382 INF: FPGA: Recv ZDACR 28343
17-03-17 18:23:31.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:31.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:31.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.638 -07 000000608 INF: FPGA: Recv ZSGSRD 29486
17-03-17 18:23:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29492
17-03-17 18:23:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29484
17-03-17 18:23:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29489
17-03-17 18:23:31.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.678 -07 000000569 INF: FPGA: Recv ZSGSRD 29487
17-03-17 18:23:31.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29489
17-03-17 18:23:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.698 -07 000000569 INF: FPGA: Recv ZSGSRD 29493
17-03-17 18:23:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.708 -07 000000608 INF: FPGA: Recv ZSGSRD 29486
17-03-17 18:23:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.718 -07 000000382 INF: FPGA: Recv ZSGSRD 29485
17-03-17 18:23:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:31.728 -07 000000382 INF: FPGA: Recv ZSGSRD 29491
17-03-17 18:23:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:31.738 -07 000000382 INF: FPGA: Recv ZPIEZORD 25032
17-03-17 18:23:31.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:31.748 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.325 V. Piezo Error = -9.8 V.
17-03-17 18:23:31.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29488 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29488 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29484 (-129.0 uncal um), Max = 29493 (-129.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:23:31.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29488, posNoise = 5, negNoise = 4
17-03-17 18:23:31.748 -07 000000610 INF: Z Motor: After move to -0.129746, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:31.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 18:23:31.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:31.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:31.748 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:31.748 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:31.748 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:31.748 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:31.748 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:31.748 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:31.748 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:31.748 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:31.748 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:31.748 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:31.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:31.758 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:31.758 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:31.758 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:31.768 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:23:31.768 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:23:31.768 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:23:31.768 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:23:31.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28520 150\n [Camera]
17-03-17 18:23:31.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:23:32.368 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:32.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:32.368 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:32.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:32.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:32.368 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:32.368 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:32.368 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:32.368 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:32.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:32.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28520 777
17-03-17 18:23:32.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:32.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:23:32.748 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:23:32.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:32.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:23:32.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:23:32.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:32.748 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:32.748 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:23:32.748 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:32.758 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:23:32.898 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:32.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:32.898 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:32.898 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:32.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:23:32.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:32.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:32.898 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:32.898 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:32.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:23:33.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:23:33.088 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:33.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28520 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:23:33.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:33.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129760519647382. ------
17-03-17 18:23:33.098 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:33.098 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13617 mm
17-03-17 18:23:33.098 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:33.098 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:33.098 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:23:33.098 -07 000000593 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 18:23:33.098 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29746, sync = True, waitForSettling = False)
17-03-17 18:23:33.098 -07 000000429 INF: Z Motor: Moving to -0.136168 mm, started at -0.129761 mm, distance = -6.41 um
17-03-17 18:23:33.108 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:33.108 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:33.108 -07 000000476 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:23:33.118 -07 000000429 INF: FPGA: Xmit ZDACW 29746\n [Z Motor]
17-03-17 18:23:33.118 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:23:33.118 -07 000000593 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:33.118 -07 000000593 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:33.118 -07 000000593 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:23:33.118 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:23:33.128 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:33.128 -07 000000429 INF: FPGA: 'ZDACW 29746' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:23:33.138 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:33.148 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:33.148 -07 000000476 INF: FPGA: Recv ZDACR 29746
17-03-17 18:23:33.158 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:33.158 -07 000000429 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:23:33.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:23:33.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:23:33.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 456 ms.
17-03-17 18:23:33.358 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:33.358 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 458 ms.
17-03-17 18:23:33.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:33.358 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:33.368 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:23:33.368 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 471 ms.
17-03-17 18:23:33.368 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 471 ms.
17-03-17 18:23:34.248 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:34.248 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:23:34.248 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1100 ms to get response, and 1129 ms overall
17-03-17 18:23:34.248 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1110 ms to get response, and 1139 ms overall
17-03-17 18:23:34.278 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:34.278 -07 000000623 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:23:34.288 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:34.288 -07 000000593 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:34.288 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:23:34.288 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1130 ms, distance = 0.838 mm, average velocity = 0.742 mm/sec
17-03-17 18:23:35.238 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:35.238 -07 000000476 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:23:35.248 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.248 -07 000000593 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:35.278 -07 000000593 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:35.278 -07 000000593 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:35.278 -07 000000593 INF: Y Motor: Moved to 70.6895 after 2175 ms (table move)
17-03-17 18:23:35.278 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136168 mm (DAC = 29746)
17-03-17 18:23:35.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.278 -07 000000623 INF: FPGA: Recv ZSGSRD 30487
17-03-17 18:23:35.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:35.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30485
17-03-17 18:23:35.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.298 -07 000000593 INF: FPGA: Recv ZSGSRD 30487
17-03-17 18:23:35.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.308 -07 000000569 INF: FPGA: Recv ZSGSRD 30487
17-03-17 18:23:35.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.318 -07 000000382 INF: FPGA: Recv ZSGSRD 30480
17-03-17 18:23:35.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.338 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.020806,
17-03-17 18:23:35.338 -07 000000476 INF: FPGA: Recv ZSGSRD 30492
17-03-17 18:23:35.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:35.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.358 -07 000000569 INF: FPGA: Recv ZSGSRD 30483
17-03-17 18:23:35.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:35.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.378 -07 000000382 INF: FPGA: Recv ZSGSRD 30487
17-03-17 18:23:35.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:35.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.428 -07 000000476 INF: FPGA: Recv ZSGSRD 30491
17-03-17 18:23:35.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 17 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 18:23:35.428 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:35.428 -07 000000382 INF: FPGA: Recv ZSGSRD 30491
17-03-17 18:23:35.438 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.438 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:35.438 -07 000000382 INF: FPGA: Recv ZPIEZORD 26369
17-03-17 18:23:35.448 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:35.448 -07 000000608 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -9.1 V.
17-03-17 18:23:35.448 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30487 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30487 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30480 (-135.3 uncal um), Max = 30492 (-135.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:35.448 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30487, posNoise = 5, negNoise = 7
17-03-17 18:23:35.448 -07 000000608 INF: Z Motor: After move to -0.136168, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:35.448 -07 000000608 INF: Z Motor: Settle wait time = 2178 ms, measure time = 166 ms (allowed 150 ms), total time = 2344 ms
17-03-17 18:23:35.448 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 166 ms, longer than max expected time of 150 ms
17-03-17 18:23:35.448 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2348 ms
17-03-17 18:23:35.448 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:35.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:35.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:35.448 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:35.448 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:35.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:35.448 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:35.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:35.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:35.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:35.458 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:35.468 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:23:35.468 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:23:35.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:35.518 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:35.718 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:35.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:35.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:35.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:23:35.758 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:35.758 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:35.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 288 ms overall
17-03-17 18:23:35.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:23:35.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:35.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:23:35.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:23:35.858 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:35.858 -07 000000569 INF: Autofocus start
17-03-17 18:23:35.858 -07 000000569 INF: MeasureProfile start
17-03-17 18:23:35.858 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:35.868 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:35.868 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:35.868 -07 000000569 INF: MeasureProfile done
17-03-17 18:23:35.868 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:23:35.868 -07 000000569 INF: Autofocus finished
17-03-17 18:23:36.068 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:36.068 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:36.068 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136178307577001. ----------
17-03-17 18:23:36.068 -07 000000610 INF: Cycle	12	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:36.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28271, sync = True, waitForSettling = True)
17-03-17 18:23:36.078 -07 000000610 INF: Z Motor: Moving to -0.129416 mm, started at -0.136178 mm, distance = 6.76 um
17-03-17 18:23:36.078 -07 000000610 INF: FPGA: Xmit ZDACW 28271\n [Z Motor]
17-03-17 18:23:36.078 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:23:36.088 -07 000000610 INF: FPGA: 'ZDACW 28271' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:36.088 -07 000000623 INF: FPGA: Recv ZDACR 28271
17-03-17 18:23:36.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:36.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29436
17-03-17 18:23:36.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:36.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29433
17-03-17 18:23:36.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.268 -07 000000608 INF: FPGA: Recv ZSGSRD 29435
17-03-17 18:23:36.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29435
17-03-17 18:23:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.288 -07 000000512 INF: FPGA: Recv ZSGSRD 29429
17-03-17 18:23:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.298 -07 000000561 INF: FPGA: Recv ZSGSRD 29438
17-03-17 18:23:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.308 -07 000000608 INF: FPGA: Recv ZSGSRD 29439
17-03-17 18:23:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29438
17-03-17 18:23:36.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.328 -07 000000561 INF: FPGA: Recv ZSGSRD 29438
17-03-17 18:23:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:36.338 -07 000000608 INF: FPGA: Recv ZSGSRD 29431
17-03-17 18:23:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:36.348 -07 000000561 INF: FPGA: Recv ZPIEZORD 24982
17-03-17 18:23:36.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:36.358 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.8 V.
17-03-17 18:23:36.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29435 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29436 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29429 (-128.6 uncal um), Max = 29439 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:23:36.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29435, posNoise = 4, negNoise = 6
17-03-17 18:23:36.358 -07 000000610 INF: Z Motor: After move to -0.129416, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:36.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:23:36.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:36.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:36.358 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:36.358 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:36.358 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:36.358 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:36.358 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:36.358 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:36.358 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:36.358 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:36.358 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:36.358 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:36.368 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:36.368 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:36.368 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:36.368 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:36.378 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:23:36.378 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:23:36.378 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:23:36.378 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:23:36.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28447 150\n [Camera]
17-03-17 18:23:36.588 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:36.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:36.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:36.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:36.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:36.978 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:36.978 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:36.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:23:36.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:36.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:36.978 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:36.978 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:36.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:23:37.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28447 777
17-03-17 18:23:37.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:37.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:23:37.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:23:37.368 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:37.368 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:23:37.368 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:23:37.368 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:37.368 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:37.368 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:37.368 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:23:37.378 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:23:37.508 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:37.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:37.508 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:37.508 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:37.508 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:23:37.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:37.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:37.508 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:37.508 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:37.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:23:37.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:37.698 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:37.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28447 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:23:37.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:37.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129420036403869. ------
17-03-17 18:23:37.818 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:37.818 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13607 mm
17-03-17 18:23:37.818 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:37.818 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:23:37.818 -07 000000448 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 18:23:37.828 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:37.828 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:37.828 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29724, sync = True, waitForSettling = False)
17-03-17 18:23:37.828 -07 000000623 INF: Z Motor: Moving to -0.136068 mm, started at -0.129420 mm, distance = -6.65 um
17-03-17 18:23:37.828 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:37.828 -07 000000547 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:23:37.838 -07 000000623 INF: FPGA: Xmit ZDACW 29724\n [Z Motor]
17-03-17 18:23:37.838 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:37.838 -07 000000448 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:37.838 -07 000000448 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:37.838 -07 000000448 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:23:37.838 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:23:37.848 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:37.848 -07 000000623 INF: FPGA: 'ZDACW 29724' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:37.858 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:37.868 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:37.868 -07 000000415 INF: FPGA: Recv ZDACR 29724
17-03-17 18:23:37.878 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:37.878 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:23:37.908 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:23:37.908 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:23:37.908 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:37.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:23:37.908 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:23:37.908 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:37.918 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:37.918 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:23:37.918 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:23:37.918 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:23:38.748 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:38.748 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:23:38.748 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 890 ms to get response, and 919 ms overall
17-03-17 18:23:38.748 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 880 ms to get response, and 910 ms overall
17-03-17 18:23:38.778 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:38.778 -07 000000475 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:23:38.788 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:38.788 -07 000000448 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:38.788 -07 000000448 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:23:38.788 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 910 ms, distance = 0.843 mm, average velocity = 0.927 mm/sec
17-03-17 18:23:39.738 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:39.738 -07 000000561 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:23:39.748 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:39.748 -07 000000448 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:39.768 -07 000000448 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:39.768 -07 000000448 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:39.768 -07 000000448 INF: Y Motor: Moved to 71.5200 after 1943 ms (table move)
17-03-17 18:23:39.768 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136068 mm (DAC = 29724)
17-03-17 18:23:39.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.778 -07 000000448 INF: FPGA: Recv ZSGSRD 30468
17-03-17 18:23:39.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 18:23:39.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.778 -07 000000438 INF: FPGA: Recv ZSGSRD 30476
17-03-17 18:23:39.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:39.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.788 -07 000000547 INF: FPGA: Recv ZSGSRD 30475
17-03-17 18:23:39.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.798 -07 000000475 INF: FPGA: Recv ZSGSRD 30471
17-03-17 18:23:39.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.808 -07 000000512 INF: FPGA: Recv ZSGSRD 30473
17-03-17 18:23:39.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.818 -07 000000512 INF: FPGA: Recv ZSGSRD 30472
17-03-17 18:23:39.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.828 -07 000000448 INF: FPGA: Recv ZSGSRD 30468
17-03-17 18:23:39.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.838 -07 000000547 INF: FPGA: Recv ZSGSRD 30464
17-03-17 18:23:39.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.848 -07 000000448 INF: FPGA: Recv ZSGSRD 30472
17-03-17 18:23:39.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:39.858 -07 000000476 INF: FPGA: Recv ZSGSRD 30472
17-03-17 18:23:39.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.868 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:39.868 -07 000000512 INF: FPGA: Recv ZPIEZORD 26341
17-03-17 18:23:39.878 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:39.878 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -9.1 V.
17-03-17 18:23:39.878 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30471 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30472 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30464 (-135.2 uncal um), Max = 30476 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:39.878 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30471, posNoise = 5, negNoise = 7
17-03-17 18:23:39.878 -07 000000382 INF: Z Motor: After move to -0.136068, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:39.878 -07 000000382 INF: Z Motor: Settle wait time = 1945 ms, measure time = 104 ms (allowed 150 ms), total time = 2049 ms
17-03-17 18:23:39.878 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:39.928 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2104 ms
17-03-17 18:23:39.928 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:39.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:39.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:39.928 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:39.928 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:39.928 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:39.928 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:39.928 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:39.928 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:39.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:39.938 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:39.948 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:23:39.948 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:23:39.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:39.998 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:40.198 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:40.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:40.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:40.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:40.238 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:40.238 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:40.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:23:40.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:23:40.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:40.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:40.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:23:40.338 -07 000000561 INF: Autofocus start
17-03-17 18:23:40.338 -07 000000561 INF: MeasureProfile start
17-03-17 18:23:40.338 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:40.338 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:40.348 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:40.348 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:40.348 -07 000000561 INF: MeasureProfile done
17-03-17 18:23:40.348 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:23:40.348 -07 000000561 INF: Autofocus finished
17-03-17 18:23:40.548 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:40.548 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 18:23:40.548 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136075520182733. ----------
17-03-17 18:23:40.558 -07 000000610 INF: Cycle	12	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:40.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28248, sync = True, waitForSettling = True)
17-03-17 18:23:40.558 -07 000000610 INF: Z Motor: Moving to -0.129311 mm, started at -0.136076 mm, distance = 6.76 um
17-03-17 18:23:40.558 -07 000000610 INF: FPGA: Xmit ZDACW 28248\n [Z Motor]
17-03-17 18:23:40.558 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:23:40.568 -07 000000610 INF: FPGA: 'ZDACW 28248' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:40.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:40.568 -07 000000475 INF: FPGA: Recv ZDACR 28248
17-03-17 18:23:40.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.728 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 4.012614,
17-03-17 18:23:40.728 -07 000000561 INF: FPGA: Recv ZSGSRD 29421
17-03-17 18:23:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.748 -07 000000475 INF: FPGA: Recv ZSGSRD 29423
17-03-17 18:23:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29422
17-03-17 18:23:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.788 -07 000000623 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:23:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:40.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.808 -07 000000382 INF: FPGA: Recv ZSGSRD 29421
17-03-17 18:23:40.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:40.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.818 -07 000000623 INF: FPGA: Recv ZSGSRD 29416
17-03-17 18:23:40.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29423
17-03-17 18:23:40.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.838 -07 000000475 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:23:40.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.848 -07 000000512 INF: FPGA: Recv ZSGSRD 29419
17-03-17 18:23:40.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:40.858 -07 000000448 INF: FPGA: Recv ZSGSRD 29415
17-03-17 18:23:40.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:40.868 -07 000000438 INF: FPGA: Recv ZPIEZORD 24957
17-03-17 18:23:40.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:40.878 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.8 V.
17-03-17 18:23:40.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29420 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29420 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29415 (-128.5 uncal um), Max = 29423 (-128.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:23:40.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29420, posNoise = 3, negNoise = 5
17-03-17 18:23:40.878 -07 000000610 INF: Z Motor: After move to -0.129311, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:40.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms)
17-03-17 18:23:40.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:40.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:40.878 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:40.878 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:40.878 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:40.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:40.878 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:40.878 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:40.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:23:40.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:40.878 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:23:40.878 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:40.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:40.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:40.888 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:23:40.888 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:40.898 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:23:40.898 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:23:40.898 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:23:40.898 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:23:40.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28425 150\n [Camera]
17-03-17 18:23:41.098 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:41.488 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:41.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:41.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:41.498 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:41.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:41.498 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:41.498 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:41.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:41.498 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:41.498 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:41.588 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:41.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:41.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28425 777
17-03-17 18:23:41.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:41.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:23:41.878 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:23:41.878 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:41.878 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:41.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:23:41.888 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:23:41.888 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:41.888 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:23:41.888 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:41.888 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:23:42.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:42.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:42.028 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:42.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:42.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:42.028 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:42.038 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:42.038 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:23:42.038 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:42.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:23:42.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:42.218 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:42.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28425 150' command took 2 ms to send, 1302 ms to get response, and 1315 ms overall
17-03-17 18:23:42.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:42.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129323673221742. ------
17-03-17 18:23:42.218 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13534 mm
17-03-17 18:23:42.218 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:42.218 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:42.218 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29566, sync = True, waitForSettling = False)
17-03-17 18:23:42.228 -07 000000512 INF: Z Motor: Moving to -0.135344 mm, started at -0.129324 mm, distance = -6.02 um
17-03-17 18:23:42.228 -07 000000512 INF: FPGA: Xmit ZDACW 29566\n [Z Motor]
17-03-17 18:23:42.228 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:23:42.228 -07 000000475 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:23:42.228 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:42.228 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:23:42.228 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:23:42.238 -07 000000512 INF: FPGA: 'ZDACW 29566' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:42.238 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:42.238 -07 000000561 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:23:42.248 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:42.248 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:23:42.248 -07 000000475 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:42.248 -07 000000475 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:42.368 -07 000000475 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:23:42.368 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:42.368 -07 000000478 INF: FPGA: Recv ZDACR 29566
17-03-17 18:23:42.378 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 18:23:42.378 -07 000000512 INF: Z Motor: MoveAbsStepped took 150 ms (did NOT wait for settling yet))
17-03-17 18:23:42.378 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:42.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:23:42.418 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:23:42.418 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:42.418 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:23:42.418 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:23:42.418 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:42.418 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:42.418 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:23:42.428 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:23:42.428 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:23:42.448 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:42.448 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 79 ms to get response, and 220 ms overall
17-03-17 18:23:42.748 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:23:42.748 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:23:42.808 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:42.808 -07 000000382 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:23:42.818 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:42.818 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:42.818 -07 000000475 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:23:42.818 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.843 mm, average velocity = 2.189 mm/sec
17-03-17 18:23:43.768 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:43.788 -07 000000448 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:23:43.798 -07 000000475 INF: FPGA: 'YRDPOS' command took 22 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:43.798 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:43.818 -07 000000475 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:43.818 -07 000000475 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:43.818 -07 000000475 INF: Y Motor: Moved to 72.3501 after 1591 ms (table move)
17-03-17 18:23:43.818 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135344 mm (DAC = 29566)
17-03-17 18:23:43.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.818 -07 000000561 INF: FPGA: Recv ZSGSRD 30356
17-03-17 18:23:43.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:43.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.828 -07 000000415 INF: FPGA: Recv ZSGSRD 30363
17-03-17 18:23:43.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.838 -07 000000593 INF: FPGA: Recv ZSGSRD 30355
17-03-17 18:23:43.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.848 -07 000000623 INF: FPGA: Recv ZSGSRD 30356
17-03-17 18:23:43.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.858 -07 000000429 INF: FPGA: Recv ZSGSRD 30361
17-03-17 18:23:43.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.868 -07 000000569 INF: FPGA: Recv ZSGSRD 30355
17-03-17 18:23:43.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.878 -07 000000593 INF: FPGA: Recv ZSGSRD 30358
17-03-17 18:23:43.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.888 -07 000000415 INF: FPGA: Recv ZSGSRD 30357
17-03-17 18:23:43.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.898 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30361
17-03-17 18:23:43.908 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.908 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:43.908 -07 000000547 INF: FPGA: Recv ZSGSRD 30361
17-03-17 18:23:43.918 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.918 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:43.918 -07 000000608 INF: FPGA: Recv ZPIEZORD 26196
17-03-17 18:23:43.928 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:43.928 -07 000000462 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.2 V.
17-03-17 18:23:43.928 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30358 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30358 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30355 (-134.5 uncal um), Max = 30363 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:23:43.928 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30358, posNoise = 5, negNoise = 3
17-03-17 18:23:43.928 -07 000000462 INF: Z Motor: After move to -0.135344, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:43.928 -07 000000462 INF: Z Motor: Settle wait time = 1595 ms, measure time = 105 ms (allowed 150 ms), total time = 1700 ms
17-03-17 18:23:43.928 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:43.978 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1752 ms
17-03-17 18:23:43.978 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:43.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:43.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:43.978 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:43.978 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:43.978 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:43.978 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:43.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:43.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:43.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:43.988 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:43.998 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:23:43.998 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:23:43.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:44.048 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:44.248 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:44.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:44.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:44.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:44.288 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:44.288 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:44.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:23:44.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:23:44.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:44.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:44.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:23:44.388 -07 000000415 INF: Autofocus start
17-03-17 18:23:44.388 -07 000000415 INF: MeasureProfile start
17-03-17 18:23:44.388 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:44.388 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:44.398 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:44.398 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:44.398 -07 000000415 INF: MeasureProfile done
17-03-17 18:23:44.398 -07 000000415 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:23:44.398 -07 000000415 INF: Autofocus finished
17-03-17 18:23:44.598 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:44.598 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:44.598 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135349584210714. ----------
17-03-17 18:23:44.598 -07 000000610 INF: Cycle	12	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:44.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28044, sync = True, waitForSettling = True)
17-03-17 18:23:44.608 -07 000000610 INF: Z Motor: Moving to -0.128377 mm, started at -0.135350 mm, distance = 6.97 um
17-03-17 18:23:44.608 -07 000000610 INF: FPGA: Xmit ZDACW 28044\n [Z Motor]
17-03-17 18:23:44.608 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:23:44.618 -07 000000610 INF: FPGA: 'ZDACW 28044' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:44.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:44.618 -07 000000415 INF: FPGA: Recv ZDACR 28044
17-03-17 18:23:44.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29276
17-03-17 18:23:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.788 -07 000000415 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:23:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29273
17-03-17 18:23:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.808 -07 000000415 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:23:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.818 -07 000000561 INF: FPGA: Recv ZSGSRD 29270
17-03-17 18:23:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.828 -07 000000512 INF: FPGA: Recv ZSGSRD 29281
17-03-17 18:23:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29275
17-03-17 18:23:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.848 -07 000000478 INF: FPGA: Recv ZSGSRD 29271
17-03-17 18:23:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.858 -07 000000480 INF: FPGA: Recv ZSGSRD 29273
17-03-17 18:23:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:44.868 -07 000000478 INF: FPGA: Recv ZSGSRD 29266
17-03-17 18:23:44.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:44.878 -07 000000480 INF: FPGA: Recv ZPIEZORD 24829
17-03-17 18:23:44.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:44.888 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.279 V. Piezo Error = -9.8 V.
17-03-17 18:23:44.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29273 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29274 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29266 (-127.6 uncal um), Max = 29281 (-127.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:23:44.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29273, posNoise = 8, negNoise = 7
17-03-17 18:23:44.888 -07 000000610 INF: Z Motor: After move to -0.128377, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:44.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:23:44.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:44.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:44.888 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:44.888 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:44.888 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:44.888 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:44.888 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:44.888 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:44.888 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:44.888 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:44.888 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:44.888 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:44.898 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:44.898 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:44.898 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:44.898 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:44.908 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:23:44.908 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:23:44.908 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:23:44.908 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:23:44.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28220 150\n [Camera]
17-03-17 18:23:45.108 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:45.508 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:45.508 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:45.508 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:45.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:45.508 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:45.508 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:45.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:45.518 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:45.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:45.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28220 777
17-03-17 18:23:45.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:45.898 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:23:45.898 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:23:45.898 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:45.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:23:45.898 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:23:45.898 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:45.898 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:23:45.898 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:45.908 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:45.908 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:23:46.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:46.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:46.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:46.038 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:46.038 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:23:46.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:46.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:46.038 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:46.038 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:46.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:23:46.128 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.997626,
17-03-17 18:23:46.228 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:23:46.228 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:46.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28220 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:23:46.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:46.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128379314036903. ------
17-03-17 18:23:46.238 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:46.238 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13499 mm
17-03-17 18:23:46.238 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:46.238 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:46.238 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:23:46.238 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:23:46.238 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29489, sync = True, waitForSettling = False)
17-03-17 18:23:46.238 -07 000000382 INF: Z Motor: Moving to -0.134992 mm, started at -0.128379 mm, distance = -6.61 um
17-03-17 18:23:46.248 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:46.248 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:46.248 -07 000000429 INF: FPGA: Recv YRDPOS 148174
17-03-17 18:23:46.258 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:23:46.258 -07 000000512 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:46.258 -07 000000382 INF: FPGA: Xmit ZDACW 29489\n [Z Motor]
17-03-17 18:23:46.258 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:23:46.258 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:46.258 -07 000000512 INF: Y Motor: Moving 1347 steps-26
17-03-17 18:23:46.268 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:46.268 -07 000000382 INF: FPGA: 'ZDACW 29489' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:23:46.278 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:46.288 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:46.288 -07 000000438 INF: FPGA: Recv ZDACR 29489
17-03-17 18:23:46.298 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:46.298 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:23:46.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:23:46.418 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:23:46.418 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:46.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:23:46.418 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:23:46.418 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:46.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:46.428 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:23:46.428 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:23:46.428 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:23:46.468 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:46.468 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:23:46.588 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:46.648 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:23:46.648 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:23:46.688 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:46.688 -07 000000561 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:23:46.698 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:46.698 -07 000000512 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:46.698 -07 000000512 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:23:46.698 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.144 mm/sec
17-03-17 18:23:47.648 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:47.648 -07 000000569 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:23:47.658 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.658 -07 000000512 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:47.678 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:47.678 -07 000000512 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:47.678 -07 000000512 INF: Y Motor: Moved to 73.1768 after 1435 ms (table move)
17-03-17 18:23:47.678 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134992 mm (DAC = 29489)
17-03-17 18:23:47.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30301
17-03-17 18:23:47.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:23:47.688 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.688 -07 000000512 INF: FPGA: Recv ZSGSRD 30297
17-03-17 18:23:47.698 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.698 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30298
17-03-17 18:23:47.708 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.708 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.708 -07 000000476 INF: FPGA: Recv ZSGSRD 30302
17-03-17 18:23:47.718 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.718 -07 000000569 INF: FPGA: Recv ZSGSRD 30299
17-03-17 18:23:47.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.728 -07 000000512 INF: FPGA: Recv ZSGSRD 30308
17-03-17 18:23:47.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.738 -07 000000448 INF: FPGA: Recv ZSGSRD 30310
17-03-17 18:23:47.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.748 -07 000000512 INF: FPGA: Recv ZSGSRD 30306
17-03-17 18:23:47.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.758 -07 000000448 INF: FPGA: Recv ZSGSRD 30303
17-03-17 18:23:47.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:47.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30298
17-03-17 18:23:47.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.778 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:47.778 -07 000000448 INF: FPGA: Recv ZPIEZORD 26140
17-03-17 18:23:47.788 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:47.788 -07 000000415 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.2 V.
17-03-17 18:23:47.788 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30302 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30302 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30297 (-134.2 uncal um), Max = 30310 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:23:47.788 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30302, posNoise = 8, negNoise = 5
17-03-17 18:23:47.788 -07 000000415 INF: Z Motor: After move to -0.134992, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:47.788 -07 000000415 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:23:47.788 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:47.838 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:23:47.838 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:47.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:47.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:47.838 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:47.838 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:47.838 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:47.838 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:47.838 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:23:47.838 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:47.848 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:47.848 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:47.858 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:23:47.858 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:23:47.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:47.898 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:48.098 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:48.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:48.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:48.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:23:48.138 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:48.138 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:48.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:23:48.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:23:48.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:48.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:23:48.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:23:48.338 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:48.338 -07 000000480 INF: Autofocus start
17-03-17 18:23:48.338 -07 000000480 INF: MeasureProfile start
17-03-17 18:23:48.338 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:48.348 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:48.348 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:48.348 -07 000000480 INF: MeasureProfile done
17-03-17 18:23:48.348 -07 000000480 INF: X=8  Z correction [um]=0.01453479
17-03-17 18:23:48.348 -07 000000480 INF: Autofocus finished
17-03-17 18:23:48.548 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:48.548 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:48.548 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134989828330776. ----------
17-03-17 18:23:48.548 -07 000000610 INF: Cycle	12	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:48.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28005, sync = True, waitForSettling = True)
17-03-17 18:23:48.558 -07 000000610 INF: Z Motor: Moving to -0.128199 mm, started at -0.134990 mm, distance = 6.79 um
17-03-17 18:23:48.558 -07 000000610 INF: FPGA: Xmit ZDACW 28005\n [Z Motor]
17-03-17 18:23:48.558 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:23:48.568 -07 000000610 INF: FPGA: 'ZDACW 28005' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:48.568 -07 000000476 INF: FPGA: Recv ZDACR 28005
17-03-17 18:23:48.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:48.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.728 -07 000000448 INF: FPGA: Recv ZSGSRD 29249
17-03-17 18:23:48.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.738 -07 000000462 INF: FPGA: Recv ZSGSRD 29248
17-03-17 18:23:48.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.748 -07 000000448 INF: FPGA: Recv ZSGSRD 29247
17-03-17 18:23:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29248
17-03-17 18:23:48.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29244
17-03-17 18:23:48.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.778 -07 000000448 INF: FPGA: Recv ZSGSRD 29245
17-03-17 18:23:48.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.788 -07 000000462 INF: FPGA: Recv ZSGSRD 29240
17-03-17 18:23:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29245
17-03-17 18:23:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.808 -07 000000462 INF: FPGA: Recv ZSGSRD 29244
17-03-17 18:23:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:48.818 -07 000000608 INF: FPGA: Recv ZSGSRD 29244
17-03-17 18:23:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:48.828 -07 000000476 INF: FPGA: Recv ZPIEZORD 24824
17-03-17 18:23:48.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:48.838 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.7 V.
17-03-17 18:23:48.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29245 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29245 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29240 (-127.4 uncal um), Max = 29249 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:23:48.838 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29245, posNoise = 4, negNoise = 5
17-03-17 18:23:48.838 -07 000000610 INF: Z Motor: After move to -0.128199, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:48.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:23:48.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:48.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:48.838 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:48.838 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:48.838 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:48.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:48.838 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:48.838 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:48.838 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:48.838 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:48.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:48.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:48.838 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:23:48.838 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:48.848 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:23:48.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:48.858 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:23:48.858 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:23:48.858 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:23:48.858 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:23:48.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28181 150\n [Camera]
17-03-17 18:23:49.058 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:49.458 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:49.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:49.458 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:49.458 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:49.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:23:49.458 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:49.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:49.458 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:49.458 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:49.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:23:49.648 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28181 777
17-03-17 18:23:49.798 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:49.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:23:49.838 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:23:49.838 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:49.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:23:49.838 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:23:49.838 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:49.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:49.848 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:23:49.848 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:49.848 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:23:49.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:49.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:49.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:49.988 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:49.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:23:49.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:49.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:49.988 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:49.988 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:49.988 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:23:50.178 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:23:50.178 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:50.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28181 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:23:50.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:50.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128199436096934. ------
17-03-17 18:23:50.298 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13464 mm
17-03-17 18:23:50.298 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:50.298 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:50.318 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:23:50.318 -07 000000429 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:23:50.318 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:50.348 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:50.348 -07 000000476 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:23:50.348 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 22 ms to get response, and 32 ms overall
17-03-17 18:23:50.348 -07 000000429 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:50.348 -07 000000429 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:50.348 -07 000000429 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:23:50.348 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:50.348 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 42 ms to get response, and 49 ms overall
17-03-17 18:23:50.348 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29412, sync = True, waitForSettling = False)
17-03-17 18:23:50.348 -07 000000476 INF: Z Motor: Moving to -0.134640 mm, started at -0.128199 mm, distance = -6.44 um
17-03-17 18:23:50.358 -07 000000476 INF: FPGA: Xmit ZDACW 29412\n [Z Motor]
17-03-17 18:23:50.368 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:50.388 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:23:50.388 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:23:50.388 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:50.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:23:50.388 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:23:50.388 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:50.388 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:50.388 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:23:50.388 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:23:50.398 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:23:50.408 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:23:50.408 -07 000000476 INF: FPGA: 'ZDACW 29412' command took 0 ms to send, 41 ms to get response, and 57 ms overall
17-03-17 18:23:50.408 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:50.408 -07 000000462 INF: FPGA: Recv ZDACR 29412
17-03-17 18:23:50.418 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:50.418 -07 000000476 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-17 18:23:50.568 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:50.568 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 18:23:50.728 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:23:50.728 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 18:23:50.768 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:50.768 -07 000000547 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:23:50.778 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:50.778 -07 000000429 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:50.778 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:23:50.778 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.238 mm/sec
17-03-17 18:23:51.488 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.978563,
17-03-17 18:23:51.588 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:51.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:51.728 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:51.728 -07 000000547 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:23:51.738 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:51.738 -07 000000429 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:51.748 -07 000000429 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:51.748 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:23:51.748 -07 000000429 INF: Y Motor: Moved to 74.0088 after 1434 ms (table move)
17-03-17 18:23:51.748 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134640 mm (DAC = 29412)
17-03-17 18:23:51.748 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.758 -07 000000593 INF: FPGA: Recv ZSGSRD 30251
17-03-17 18:23:51.758 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:23:51.758 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.758 -07 000000448 INF: FPGA: Recv ZSGSRD 30245
17-03-17 18:23:51.768 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:51.768 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.768 -07 000000462 INF: FPGA: Recv ZSGSRD 30242
17-03-17 18:23:51.778 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.778 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.778 -07 000000593 INF: FPGA: Recv ZSGSRD 30248
17-03-17 18:23:51.788 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.788 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.788 -07 000000462 INF: FPGA: Recv ZSGSRD 30250
17-03-17 18:23:51.798 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.798 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.798 -07 000000429 INF: FPGA: Recv ZSGSRD 30252
17-03-17 18:23:51.808 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.808 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.808 -07 000000462 INF: FPGA: Recv ZSGSRD 30245
17-03-17 18:23:51.818 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.818 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.818 -07 000000429 INF: FPGA: Recv ZSGSRD 30250
17-03-17 18:23:51.828 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.828 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.828 -07 000000547 INF: FPGA: Recv ZSGSRD 30247
17-03-17 18:23:51.838 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.838 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:51.838 -07 000000429 INF: FPGA: Recv ZSGSRD 30246
17-03-17 18:23:51.848 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.848 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:51.848 -07 000000547 INF: FPGA: Recv ZPIEZORD 26152
17-03-17 18:23:51.858 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:51.858 -07 000000608 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -9.0 V.
17-03-17 18:23:51.858 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30248 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30248 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30242 (-133.8 uncal um), Max = 30252 (-133.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:23:51.858 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30248, posNoise = 4, negNoise = 6
17-03-17 18:23:51.858 -07 000000608 INF: Z Motor: After move to -0.134640, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:51.858 -07 000000608 INF: Z Motor: Settle wait time = 1403 ms, measure time = 103 ms (allowed 150 ms), total time = 1506 ms
17-03-17 18:23:51.858 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:51.908 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:23:51.908 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:51.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:51.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:51.908 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:51.908 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:51.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:51.908 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:51.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:23:51.908 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:51.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:51.918 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:51.918 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:23:51.918 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:23:51.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:51.968 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:52.168 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:52.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:52.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:52.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:52.208 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:52.208 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:52.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 18:23:52.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:23:52.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:52.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:52.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:23:52.318 -07 000000547 INF: Autofocus start
17-03-17 18:23:52.318 -07 000000547 INF: MeasureProfile start
17-03-17 18:23:52.318 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:52.328 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:52.338 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:52.338 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:52.338 -07 000000547 INF: MeasureProfile done
17-03-17 18:23:52.338 -07 000000547 INF: X=5  Z correction [um]=0.0001036296
17-03-17 18:23:52.338 -07 000000547 INF: Autofocus finished
17-03-17 18:23:52.538 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:52.538 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:23:52.538 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.13464292087512. ----------
17-03-17 18:23:52.538 -07 000000610 INF: Cycle	12	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:52.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27925, sync = True, waitForSettling = True)
17-03-17 18:23:52.548 -07 000000610 INF: Z Motor: Moving to -0.127832 mm, started at -0.134643 mm, distance = 6.81 um
17-03-17 18:23:52.548 -07 000000610 INF: FPGA: Xmit ZDACW 27925\n [Z Motor]
17-03-17 18:23:52.548 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:23:52.558 -07 000000610 INF: FPGA: 'ZDACW 27925' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:52.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:52.558 -07 000000462 INF: FPGA: Recv ZDACR 27925
17-03-17 18:23:52.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.718 -07 000000593 INF: FPGA: Recv ZSGSRD 29192
17-03-17 18:23:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29188
17-03-17 18:23:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.738 -07 000000448 INF: FPGA: Recv ZSGSRD 29192
17-03-17 18:23:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.748 -07 000000476 INF: FPGA: Recv ZSGSRD 29193
17-03-17 18:23:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29190
17-03-17 18:23:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.768 -07 000000623 INF: FPGA: Recv ZSGSRD 29190
17-03-17 18:23:52.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.778 -07 000000476 INF: FPGA: Recv ZSGSRD 29185
17-03-17 18:23:52.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.788 -07 000000593 INF: FPGA: Recv ZSGSRD 29186
17-03-17 18:23:52.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29187
17-03-17 18:23:52.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:52.808 -07 000000593 INF: FPGA: Recv ZSGSRD 29184
17-03-17 18:23:52.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:52.818 -07 000000448 INF: FPGA: Recv ZPIEZORD 24794
17-03-17 18:23:52.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:52.828 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.6 V.
17-03-17 18:23:52.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29189 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29189 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29184 (-127.0 uncal um), Max = 29193 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:23:52.828 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29189, posNoise = 4, negNoise = 5
17-03-17 18:23:52.828 -07 000000610 INF: Z Motor: After move to -0.127832, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:52.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:23:52.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:52.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:52.828 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:52.828 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:52.828 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:52.828 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:52.828 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:52.828 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:52.828 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:23:52.828 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:52.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:52.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:52.838 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:23:52.838 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:52.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:52.838 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:52.848 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:23:52.848 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:23:52.848 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:23:52.848 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:23:52.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28101 150\n [Camera]
17-03-17 18:23:53.048 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:53.438 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:53.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:53.438 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:53.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:53.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:53.448 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:53.448 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:53.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:53.448 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:53.448 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:53.638 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28101 777
17-03-17 18:23:53.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:53.838 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:23:53.838 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:23:53.838 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:53.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:23:53.838 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:23:53.838 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:53.848 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:53.848 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:23:53.848 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:23:53.848 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:23:53.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:53.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:53.968 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:53.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:53.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:53.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:53.978 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:53.978 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:23:53.978 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:53.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:23:54.158 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:23:54.168 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:54.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28101 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-17 18:23:54.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:23:54.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127839680216996. ------
17-03-17 18:23:54.168 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13415 mm
17-03-17 18:23:54.168 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:23:54.168 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:54.288 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:23:54.288 -07 000000547 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:23:54.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:54.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:23:54.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:23:54.368 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:54.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:23:54.378 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:23:54.378 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:54.378 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:54.378 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:23:54.378 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:54.388 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:23:54.388 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29305, sync = True, waitForSettling = False)
17-03-17 18:23:54.388 -07 000000561 INF: Z Motor: Moving to -0.134150 mm, started at -0.127840 mm, distance = -6.31 um
17-03-17 18:23:54.388 -07 000000561 INF: FPGA: Xmit ZDACW 29305\n [Z Motor]
17-03-17 18:23:54.398 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:54.398 -07 000000448 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:23:54.398 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:23:54.398 -07 000000561 INF: FPGA: 'ZDACW 29305' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-17 18:23:54.398 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:54.398 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 107 ms to get response, and 227 ms overall
17-03-17 18:23:54.398 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 102 ms to get response, and 106 ms overall
17-03-17 18:23:54.398 -07 000000547 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:54.398 -07 000000547 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:23:54.398 -07 000000547 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:23:54.398 -07 000000448 INF: FPGA: Recv ZDACR 29305
17-03-17 18:23:54.408 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:54.408 -07 000000561 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 18:23:54.408 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:23:54.418 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:23:54.618 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:23:54.618 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 18:23:54.778 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:23:54.778 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:23:54.808 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:54.808 -07 000000415 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:23:54.818 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:54.818 -07 000000547 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:54.818 -07 000000547 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:23:54.818 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-17 18:23:55.768 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:55.768 -07 000000448 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:23:55.778 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:23:55.778 -07 000000547 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:55.788 -07 000000547 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:23:55.788 -07 000000547 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:23:55.788 -07 000000547 INF: Y Motor: Moved to 74.8330 after 1500 ms (table move)
17-03-17 18:23:55.788 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134150 mm (DAC = 29305)
17-03-17 18:23:55.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.798 -07 000000593 INF: FPGA: Recv ZSGSRD 30176
17-03-17 18:23:55.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:23:55.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.798 -07 000000382 INF: FPGA: Recv ZSGSRD 30175
17-03-17 18:23:55.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:23:55.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.808 -07 000000547 INF: FPGA: Recv ZSGSRD 30169
17-03-17 18:23:55.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.818 -07 000000480 INF: FPGA: Recv ZSGSRD 30169
17-03-17 18:23:55.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.828 -07 000000593 INF: FPGA: Recv ZSGSRD 30169
17-03-17 18:23:55.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.838 -07 000000593 INF: FPGA: Recv ZSGSRD 30170
17-03-17 18:23:55.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.848 -07 000000382 INF: FPGA: Recv ZSGSRD 30168
17-03-17 18:23:55.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.858 -07 000000480 INF: FPGA: Recv ZSGSRD 30168
17-03-17 18:23:55.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.868 -07 000000415 INF: FPGA: Recv ZSGSRD 30179
17-03-17 18:23:55.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:55.878 -07 000000561 INF: FPGA: Recv ZSGSRD 30166
17-03-17 18:23:55.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.888 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:55.888 -07 000000448 INF: FPGA: Recv ZPIEZORD 26038
17-03-17 18:23:55.898 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:55.898 -07 000000623 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.472 V. Piezo Error = -9.1 V.
17-03-17 18:23:55.898 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30171 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30169 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30166 (-133.3 uncal um), Max = 30179 (-133.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:23:55.898 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30171, posNoise = 8, negNoise = 5
17-03-17 18:23:55.898 -07 000000623 INF: Z Motor: After move to -0.134150, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:55.898 -07 000000623 INF: Z Motor: Settle wait time = 1403 ms, measure time = 103 ms (allowed 150 ms), total time = 1506 ms
17-03-17 18:23:55.898 -07 000000623 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:23:55.948 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1774 ms
17-03-17 18:23:55.948 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:23:55.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:55.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:55.948 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:55.948 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:55.948 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:23:55.948 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:55.948 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:55.948 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:23:55.958 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:55.958 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:23:55.968 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:23:55.968 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:23:55.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:23:56.018 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:23:56.218 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:23:56.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:23:56.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:23:56.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:23:56.258 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:23:56.258 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:23:56.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:23:56.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:23:56.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:56.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:23:56.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:23:56.458 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:23:56.458 -07 000000593 INF: Autofocus start
17-03-17 18:23:56.458 -07 000000593 INF: MeasureProfile start
17-03-17 18:23:56.458 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:23:56.468 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:23:56.468 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:23:56.468 -07 000000593 INF: MeasureProfile done
17-03-17 18:23:56.468 -07 000000593 INF: X=-18  Z correction [um]=-0.09102372
17-03-17 18:23:56.468 -07 000000593 INF: Autofocus finished
17-03-17 18:23:56.588 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:23:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 11. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:23:56.668 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:23:56.668 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:23:56.668 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134148256540205. ----------
17-03-17 18:23:56.668 -07 000000610 INF: Cycle	12	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:23:56.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27798, sync = True, waitForSettling = True)
17-03-17 18:23:56.678 -07 000000610 INF: Z Motor: Moving to -0.127251 mm, started at -0.134148 mm, distance = 6.90 um
17-03-17 18:23:56.678 -07 000000610 INF: FPGA: Xmit ZDACW 27798\n [Z Motor]
17-03-17 18:23:56.678 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:23:56.688 -07 000000610 INF: FPGA: 'ZDACW 27798' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:23:56.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:23:56.688 -07 000000569 INF: FPGA: Recv ZDACR 27798
17-03-17 18:23:56.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:23:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.848 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.985358,
17-03-17 18:23:56.848 -07 000000448 INF: FPGA: Recv ZSGSRD 29094
17-03-17 18:23:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.868 -07 000000561 INF: FPGA: Recv ZSGSRD 29100
17-03-17 18:23:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.878 -07 000000569 INF: FPGA: Recv ZSGSRD 29096
17-03-17 18:23:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.898 -07 000000547 INF: FPGA: Recv ZSGSRD 29099
17-03-17 18:23:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:23:56.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.908 -07 000000480 INF: FPGA: Recv ZSGSRD 29098
17-03-17 18:23:56.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29095
17-03-17 18:23:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:23:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.948 -07 000000475 INF: FPGA: Recv ZSGSRD 29101
17-03-17 18:23:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29099
17-03-17 18:23:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29099
17-03-17 18:23:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:23:56.978 -07 000000569 INF: FPGA: Recv ZSGSRD 29091
17-03-17 18:23:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:23:56.988 -07 000000448 INF: FPGA: Recv ZPIEZORD 24652
17-03-17 18:23:56.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:23:56.998 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.242 V. Piezo Error = -9.8 V.
17-03-17 18:23:56.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29097 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29098 (-126.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29091 (-126.4 uncal um), Max = 29101 (-126.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:23:56.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29097, posNoise = 4, negNoise = 6
17-03-17 18:23:56.998 -07 000000610 INF: Z Motor: After move to -0.127251, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:23:56.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-17 18:23:56.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:23:56.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:23:56.998 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:23:56.998 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:23:56.998 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:23:56.998 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:23:56.998 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:23:56.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:23:56.998 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:23:56.998 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:23:56.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:23:56.998 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:23:57.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:23:57.008 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:23:57.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:23:57.008 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:23:57.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:23:57.018 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:23:57.018 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:23:57.018 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:23:57.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 27974 150\n [Camera]
17-03-17 18:23:57.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:23:57.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:23:57.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:23:57.608 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:57.618 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:23:57.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:23:57.618 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:57.618 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:57.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:23:57.618 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:57.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:23:57.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27974 777
17-03-17 18:23:57.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:23:58.008 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:23:58.008 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:23:58.008 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:58.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:23:58.008 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:23:58.008 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:58.018 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:58.018 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:23:58.018 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:58.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:23:58.138 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:23:58.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:23:58.148 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:23:58.148 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:23:58.148 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:23:58.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:23:58.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:23:58.148 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:23:58.148 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:23:58.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) start.
17-03-17 18:23:58.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:23:58.338 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:23:58.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 27974 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-17 18:23:58.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:23:58.528 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:23:58.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:58.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1124240600, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:23:58.538 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:23:58.538 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:23:58.538 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:23:58.538 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:23:58.538 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:23:58.538 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:23:58.548 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:23:58.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:23:58.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:23:58.628 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:23:58.658 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 18:23:58.658 -07 000000610 INF: Imaging Cycle 12: ScanTilesCommand Cycle 12 time end. Duration was 156802 ms.
17-03-17 18:23:58.658 -07 000000610 INF: =================== Cycle #12 ===================
17-03-17 18:23:58.658 -07 000000610 INF: ===================  ===================
17-03-17 18:23:58.658 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:23:58.668 -07 000000561 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 18:23:58.668 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:23:58.668 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 18:23:58.668 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 12, FrontChillerTemperature: 3.985358, FrontChillerHeatSinkTemperature: 0.299181, AmbientTemperature: 18.73856, FlowCellCompartmentTemperature: 21.98528, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.51096, GreenLEDSensorTemperature: 25.82498, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-17 18:23:58.668 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.