17-03-18 04:49:12.614 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:12.614 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:49:12.614 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 04:49:12.614 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:12.614 -07 000000502 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:49:12.624 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:49:12.624 -07 000000610 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:12.624 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:49:12.624 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:49:12.624 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:49:12.734 -07 000000579 INF: FPGA: Recv YMVTO 154378 874
17-03-18 04:49:12.734 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-18 04:49:12.734 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 04:49:12.734 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 880 steps, but required 874 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 04:49:12.734 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 04:49:15.734 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:49:15.734 -07 000000569 INF: FPGA: Recv YRDPOS 154379
17-03-18 04:49:15.744 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:49:15.744 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:49:15.764 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:49:15.764 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:49:15.764 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3150 ms
17-03-18 04:49:15.764 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 60° ===================
17-03-18 04:49:15.774 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:49:15.774 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:49:15.774 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:49:15.784 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:15.784 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:49:15.784 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 04:49:15.794 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:15.794 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 60° ===================
17-03-18 04:49:15.794 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:15.794 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:49:15.794 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:15.824 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:49:15.824 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:49:15.824 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:49:16.024 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.989471,
17-03-18 04:49:16.124 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:49:16.144 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:49:16.144 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:49:16.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:16.214 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:49:16.214 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:49:16.314 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:16.314 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:49:16.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:16.344 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:49:16.344 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:49:16.344 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:49:16.474 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:49:16.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:16.704 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:49:19.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:19.674 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:20.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:20.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:20.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:20.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:20.574 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:49:20.574 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:20.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:20.734 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:49:20.734 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:49:20.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:20.894 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:49:20.894 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:49:20.894 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:49:21.024 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:49:21.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:21.384 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.973092,
17-03-18 04:49:21.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:21.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:21.514 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:49:21.514 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:21.714 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1799, R2=1869, Total=3668. Warn if over 250 bubbles per interval.
17-03-18 04:49:22.734 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:49:22.734 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:49:22.734 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:22.754 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:49:22.754 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:49:22.754 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:49:22.894 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:49:22.914 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:49:22.914 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:49:22.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:22.984 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:49:22.984 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:49:23.084 -07 000000610 INF: =================== Cycle #130, Pumping Reagent CMS (4) ===================
17-03-18 04:49:23.084 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:49:23.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:23.114 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:49:23.114 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:49:23.114 -07 000000610 INF: =================== Cycle #130, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:49:23.244 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:49:23.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:24.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:24.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:25.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:25.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:25.204 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:49:25.204 -07 000000610 INF: =================== Cycle #130, Pumping Reagent CMS (4) ===================
17-03-18 04:49:25.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:25.364 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:49:25.364 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:49:25.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:25.524 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:49:25.524 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:49:25.524 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:49:25.654 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:49:25.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:26.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:26.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:26.144 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:49:26.144 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:26.704 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:49:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1800, R2=1870, Total=3670. Warn if over 250 bubbles per interval.
17-03-18 04:49:26.744 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.988112,
17-03-18 04:49:27.364 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:49:27.364 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:49:27.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:27.384 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:49:27.384 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:49:27.384 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:49:27.534 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:49:27.554 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:49:27.554 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:49:27.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:27.624 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:49:27.624 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:49:27.724 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:27.724 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:49:27.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:27.754 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:49:27.754 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:49:27.754 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:49:27.884 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:49:27.924 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:28.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:28.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:28.824 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:49:28.824 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:28.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:28.984 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:49:28.984 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:49:29.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:29.144 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:49:29.144 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:49:29.144 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:49:29.274 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:49:29.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:29.734 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:29.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:29.764 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:49:29.764 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:29.764 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:49:29.764 -07 000000447 INF: WaitCommand(10000) start
17-03-18 04:49:29.764 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:49:30.984 -07 000000501 INF: AsyncDelayTimer waited 1214ms
17-03-18 04:49:30.984 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-18 04:49:31.014 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:49:31.014 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:49:31.144 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:49:31.184 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:31.704 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1800, R2=1870, Total=3670. Warn if over 250 bubbles per interval.
17-03-18 04:49:32.104 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.981281,
17-03-18 04:49:32.714 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:32.744 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:33.164 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:33.194 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:33.194 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:49:33.194 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:49:33.194 -07 000000501 INF: ===================  ===================
17-03-18 04:49:36.704 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:36.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1800, R2=1870, Total=3670. Warn if over 250 bubbles per interval.
17-03-18 04:49:37.464 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.993549,
17-03-18 04:49:39.774 -07 000000447 INF: WaitCommand(10000) end
17-03-18 04:49:39.774 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:39.774 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:49:39.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:39.814 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:49:39.814 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:49:39.814 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:49:39.944 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:49:39.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:41.704 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:41.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1800, R2=1870, Total=3670. Warn if over 250 bubbles per interval.
17-03-18 04:49:42.824 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.016692,
17-03-18 04:49:46.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:46.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:46.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:46.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:46.704 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1800, R2=1870, Total=3670. Warn if over 250 bubbles per interval.
17-03-18 04:49:47.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:47.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:47.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:47.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:47.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:47.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:47.944 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:49:47.944 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:48.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:48.104 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:49:48.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:49:48.184 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.014009,
17-03-18 04:49:48.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:48.264 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:49:48.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:49:48.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:49:48.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:49:48.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:48.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:48.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:48.884 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:49:48.884 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:50.104 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:49:50.104 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:49:50.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:50.124 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:49:50.124 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:49:50.124 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:49:50.334 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:49:50.354 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:49:50.354 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:49:50.404 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:50.424 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:49:50.424 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:49:50.524 -07 000000610 INF: =================== Cycle #130, Pumping Reagent IMT (1) ===================
17-03-18 04:49:50.524 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:49:50.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:50.564 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:49:50.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:49:50.564 -07 000000610 INF: =================== Cycle #130, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:49:50.694 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:49:50.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:51.704 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:49:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1800, R2=1870, Total=3670. Warn if over 250 bubbles per interval.
17-03-18 04:49:52.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:52.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:52.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:52.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:52.654 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 04:49:52.654 -07 000000610 INF: =================== Cycle #130, Pumping Reagent IMT (1) ===================
17-03-18 04:49:52.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:52.814 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:49:52.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:49:52.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:52.974 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:49:52.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:49:52.974 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:49:53.104 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:49:53.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:53.544 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.99219,
17-03-18 04:49:53.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:53.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:53.594 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:49:53.594 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:54.814 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:49:54.814 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:49:54.814 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:54.834 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:49:54.834 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:49:54.834 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:49:55.064 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:49:55.084 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:49:55.084 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:49:55.134 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:49:55.154 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:49:55.154 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:49:55.254 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:55.254 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:49:55.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:55.284 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:49:55.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:49:55.284 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:49:55.414 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:49:55.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:49:56.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:56.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:56.354 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:49:56.354 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:49:56.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:56.514 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:49:56.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:49:56.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:49:56.674 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:49:56.674 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:49:56.674 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:49:56.704 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 04:49:56.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1872, Total=3675. Warn if over 250 bubbles per interval.
17-03-18 04:49:56.804 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:49:56.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:57.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:49:57.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:49:57.294 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:49:57.294 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:57.294 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 65° ===================
17-03-18 04:49:57.294 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:49:57.294 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:49:57.294 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:49:57.304 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:49:57.304 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:49:57.304 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 04:49:57.314 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:49:57.314 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 65° ===================
17-03-18 04:49:57.314 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:49:57.314 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:49:58.904 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.989471,
17-03-18 04:50:01.704 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:01.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1872, Total=3675. Warn if over 250 bubbles per interval.
17-03-18 04:50:04.264 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.011254,
17-03-18 04:50:06.704 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:50:06.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:09.624 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.015368,
17-03-18 04:50:11.704 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:11.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:14.984 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.015368,
17-03-18 04:50:16.704 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:20.344 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.99219,
17-03-18 04:50:21.704 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:25.704 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.996267,
17-03-18 04:50:26.704 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:27.324 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:50:27.324 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:50:27.324 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:50:27.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:50:27.454 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:50:27.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:50:27.454 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:50:27.584 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:50:27.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:50:28.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:50:28.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:50:28.194 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 04:50:28.194 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:50:28.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:50:28.354 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:50:28.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:50:28.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:50:28.514 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:50:28.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:50:28.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:50:28.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:50:28.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:50:29.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:50:29.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:50:29.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:50:29.134 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:50:29.134 -07 000000461 INF: WaitCommand(30000) start
17-03-18 04:50:29.134 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:50:29.134 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:50:30.354 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:50:30.354 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 04:50:30.384 -07 000000579 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:50:30.384 -07 000000579 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:50:30.514 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:50:30.554 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:50:31.064 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.985358,
17-03-18 04:50:31.704 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:32.894 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:50:32.924 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:50:33.344 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:50:33.374 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:50:33.374 -07 000000579 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:50:33.374 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:50:33.374 -07 000000579 INF: ===================  ===================
17-03-18 04:50:36.424 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.011254,
17-03-18 04:50:36.714 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:41.714 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:41.784 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.028963,
17-03-18 04:50:46.704 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:46.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:47.144 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.038479,
17-03-18 04:50:51.704 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:51.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:52.504 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.993549,
17-03-18 04:50:56.704 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:50:56.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1803, R2=1873, Total=3676. Warn if over 250 bubbles per interval.
17-03-18 04:50:57.864 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.988112,
17-03-18 04:50:59.144 -07 000000461 INF: WaitCommand(30000) end
17-03-18 04:50:59.144 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 22° ===================
17-03-18 04:50:59.144 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:50:59.144 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:50:59.144 -07 000000606 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:50:59.154 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:50:59.154 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:50:59.154 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-18 04:50:59.164 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:50:59.164 -07 000000610 INF: =================== Cycle #130, Flow Cell Temp 22° ===================
17-03-18 04:50:59.164 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:50:59.164 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:50:59.164 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:50:59.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:50:59.204 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:50:59.204 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:50:59.204 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:50:59.334 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:50:59.374 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:01.704 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 04:51:01.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1805, R2=1874, Total=3679. Warn if over 250 bubbles per interval.
17-03-18 04:51:02.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:02.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:02.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:02.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:03.224 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.989471,
17-03-18 04:51:03.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:03.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:03.434 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:51:03.434 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:51:03.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:03.594 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:51:03.594 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:51:03.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:03.754 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:51:03.754 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:51:03.754 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:51:03.884 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:51:03.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:04.344 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:04.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:04.374 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:51:04.374 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:51:05.594 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:51:05.594 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:51:05.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:51:05.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:51:05.614 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:51:05.614 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:51:05.764 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:51:05.784 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:51:05.784 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:51:05.834 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:51:05.854 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:51:05.854 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:51:05.954 -07 000000610 INF: =================== Cycle #130, Pumping Reagent USM (2) ===================
17-03-18 04:51:05.954 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:51:05.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:05.984 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:51:05.984 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:51:05.984 -07 000000610 INF: =================== Cycle #130, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:51:06.114 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:51:06.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:06.704 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-18 04:51:06.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1809, R2=1878, Total=3687. Warn if over 250 bubbles per interval.
17-03-18 04:51:07.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:07.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:08.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:08.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:08.074 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:51:08.074 -07 000000610 INF: =================== Cycle #130, Pumping Reagent USM (2) ===================
17-03-18 04:51:08.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:08.234 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:51:08.234 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:51:08.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:08.394 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:51:08.394 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:51:08.394 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:51:08.524 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:51:08.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:08.584 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.005817,
17-03-18 04:51:08.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:09.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:09.014 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:51:09.014 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:51:10.234 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:51:10.234 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:51:10.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:51:10.254 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:51:10.254 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:51:10.254 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:51:10.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:51:10.424 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:51:10.424 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:51:10.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:51:10.494 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:51:10.494 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:51:10.594 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:51:10.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:51:10.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:10.624 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:51:10.624 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:51:10.624 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:51:10.754 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:51:10.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:11.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:11.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:11.694 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:51:11.694 -07 000000610 INF: =================== Cycle #130, Pumping Reagent PR2 (3) ===================
17-03-18 04:51:11.704 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:51:11.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:11.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:11.854 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:51:11.854 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:51:11.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:51:12.014 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:51:12.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:51:12.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:51:12.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:51:12.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:12.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:12.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:12.634 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:51:12.634 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:51:12.634 -07 000000424 INF: WaitCommand(10000) start
17-03-18 04:51:12.634 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:51:12.634 -07 000000474 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:51:13.854 -07 000000474 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:51:13.854 -07 000000474 INF: LanePump: Xmit /1?\r
17-03-18 04:51:13.884 -07 000000474 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:51:13.884 -07 000000474 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:51:13.944 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.024884,
17-03-18 04:51:14.014 -07 000000474 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:51:14.054 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:15.584 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:15.614 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:51:16.034 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 04:51:16.064 -07 000000474 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:51:16.064 -07 000000474 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:51:16.064 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:51:16.064 -07 000000474 INF: ===================  ===================
17-03-18 04:51:16.704 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:16.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:19.304 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.996267,
17-03-18 04:51:21.704 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:22.644 -07 000000424 INF: WaitCommand(10000) end
17-03-18 04:51:22.644 -07 000000610 INF: =================== Cycle #130, Imaging ===================
17-03-18 04:51:22.644 -07 000000610 INF: Imaging Cycle 130: ScanTilesCommand Cycle 130 time start.
17-03-18 04:51:22.644 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:51:22.644 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:51:22.674 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:51:22.674 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:51:22.674 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:51:22.974 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:51:22.994 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:51:22.994 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:51:23.044 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:51:23.064 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:51:23.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:23.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:23.064 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:51:23.064 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:23.064 -07 000000467 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:51:23.064 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-18 04:51:23.074 -07 000000467 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:51:23.074 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:51:23.074 -07 000000479 INF: FPGA: Recv EXLED1ADCR 23183
17-03-18 04:51:23.084 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:23.084 -07 000000467 INF: RedLED: Using Red data: Photodiode ADC 23183 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.0 mW
17-03-18 04:51:23.084 -07 000000467 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:51:23.084 -07 000000461 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:51:23.094 -07 000000467 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:23.094 -07 000000467 INF: RedLED: LED was on for 20 ms
17-03-18 04:51:23.094 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 04:51:23.094 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:51:23.094 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:23.094 -07 000000467 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:51:23.094 -07 000000581 INF: FPGA: Recv EXLED2ON 
17-03-18 04:51:23.104 -07 000000467 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:23.104 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:51:23.104 -07 000000626 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 04:51:23.114 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:23.114 -07 000000467 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 04:51:23.114 -07 000000467 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:51:23.114 -07 000000618 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:51:23.124 -07 000000467 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:23.124 -07 000000467 INF: GreenLED: LED was on for 19 ms
17-03-18 04:51:23.124 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:51:23.124 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:51:23.124 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 04:51:23.134 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:23.134 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:51:23.634 -07 000000608 INF: FPGA: Recv EMOUT
17-03-18 04:51:23.634 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:51:23.634 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:51:23.634 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-18 04:51:23.644 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:23.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:23.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126471323030801. ------
17-03-18 04:51:23.644 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:23.644 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17846 mm
17-03-18 04:51:23.644 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:23.644 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:51:23.644 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 04:51:23.644 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38984, sync = True, waitForSettling = False)
17-03-18 04:51:23.644 -07 000000579 INF: Z Motor: Moving to -0.178457 mm, started at -0.126471 mm, distance = -51.99 um
17-03-18 04:51:23.644 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:23.654 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:51:23.654 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:23.654 -07 000000467 INF: FPGA: Recv YRDPOS 154379
17-03-18 04:51:23.664 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:51:23.664 -07 000000569 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:23.664 -07 000000569 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:51:23.664 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:51:23.664 -07 000000579 INF: FPGA: Xmit ZDACW 38984\n [Z Motor]
17-03-18 04:51:23.664 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:51:23.674 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:23.674 -07 000000579 INF: FPGA: 'ZDACW 38984' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:51:23.684 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:51:23.694 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:23.694 -07 000000625 INF: FPGA: Recv ZDACR 38984
17-03-18 04:51:23.704 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:23.704 -07 000000579 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:51:23.874 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:23.874 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:51:24.664 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.012614,
17-03-18 04:51:25.364 -07 000000606 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 04:51:25.364 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1679 ms to get response, and 1708 ms overall
17-03-18 04:51:25.364 -07 000000569 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:51:25.364 -07 000000569 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24778 steps (15.486 mm). Slippage = 0.019 mm (0.00%).
17-03-18 04:51:25.364 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1708 ms, distance = 15.468 mm, average velocity = 9.056 mm/sec
17-03-18 04:51:26.704 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:28.214 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:28.214 -07 000000606 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:51:28.224 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:28.224 -07 000000569 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:28.254 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:28.254 -07 000000569 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:51:28.254 -07 000000569 INF: Y Motor: Moved to 59.9097 after 4604 ms
17-03-18 04:51:28.254 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178457 mm (DAC = 38984)
17-03-18 04:51:28.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.254 -07 000000502 INF: FPGA: Recv ZSGSRD 37065
17-03-18 04:51:28.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:51:28.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.264 -07 000000424 INF: FPGA: Recv ZSGSRD 37068
17-03-18 04:51:28.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.274 -07 000000618 INF: FPGA: Recv ZSGSRD 37068
17-03-18 04:51:28.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.284 -07 000000382 INF: FPGA: Recv ZSGSRD 37069
17-03-18 04:51:28.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.294 -07 000000447 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:51:28.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.304 -07 000000502 INF: FPGA: Recv ZSGSRD 37063
17-03-18 04:51:28.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.314 -07 000000424 INF: FPGA: Recv ZSGSRD 37076
17-03-18 04:51:28.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.324 -07 000000479 INF: FPGA: Recv ZSGSRD 37066
17-03-18 04:51:28.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:51:28.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.334 -07 000000382 INF: FPGA: Recv ZSGSRD 37071
17-03-18 04:51:28.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:28.344 -07 000000447 INF: FPGA: Recv ZSGSRD 37070
17-03-18 04:51:28.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.354 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:28.354 -07 000000474 INF: FPGA: Recv ZPIEZORD 33255
17-03-18 04:51:28.364 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:28.364 -07 000000480 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.4 V.
17-03-18 04:51:28.364 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37069 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37068 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37063 (-177.5 uncal um), Max = 37076 (-177.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:51:28.364 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37069, posNoise = 7, negNoise = 6
17-03-18 04:51:28.364 -07 000000480 INF: Z Motor: After move to -0.178457, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:28.364 -07 000000480 INF: Z Motor: Settle wait time = 4608 ms, measure time = 104 ms (allowed 150 ms), total time = 4712 ms
17-03-18 04:51:28.364 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:28.414 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-18 04:51:28.414 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:28.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:28.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:28.414 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:28.414 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:28.414 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:28.414 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:28.414 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:28.414 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:51:28.444 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:51:28.444 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:28.444 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:51:28.444 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:28.464 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:51:28.464 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:51:28.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:28.504 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:28.804 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:28.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:28.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:28.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:51:28.844 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:28.844 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:28.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:51:28.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:51:28.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:28.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:51:28.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:51:29.044 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:29.044 -07 000000467 INF: Image SNR check: start
17-03-18 04:51:29.044 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:29.054 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:51:29.054 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:29.054 -07 000000467 INF: Image SNR check: pass  [peak (Max-Min)=131.04]
17-03-18 04:51:29.054 -07 000000467 INF: Autofocus start
17-03-18 04:51:29.054 -07 000000467 INF: MeasureProfile start
17-03-18 04:51:29.064 -07 000000467 INF: MeasureProfile done
17-03-18 04:51:29.064 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:51:29.064 -07 000000467 INF: Autofocus finished
17-03-18 04:51:29.254 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:29.254 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:51:29.254 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178462471894072. ----------
17-03-18 04:51:29.264 -07 000000610 INF: Cycle	130	Tile	1	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:29.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37499, sync = True, waitForSettling = True)
17-03-18 04:51:29.264 -07 000000610 INF: Z Motor: Moving to -0.171659 mm, started at -0.178462 mm, distance = 6.80 um
17-03-18 04:51:29.264 -07 000000610 INF: FPGA: Xmit ZDACW 37499\n [Z Motor]
17-03-18 04:51:29.264 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:51:29.274 -07 000000610 INF: FPGA: 'ZDACW 37499' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:29.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:29.274 -07 000000618 INF: FPGA: Recv ZDACR 37499
17-03-18 04:51:29.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:29.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.434 -07 000000461 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:51:29.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.444 -07 000000625 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:51:29.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36014
17-03-18 04:51:29.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.464 -07 000000581 INF: FPGA: Recv ZSGSRD 36018
17-03-18 04:51:29.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.474 -07 000000608 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:51:29.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.484 -07 000000501 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:51:29.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.494 -07 000000382 INF: FPGA: Recv ZSGSRD 36014
17-03-18 04:51:29.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.504 -07 000000480 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:51:29.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.514 -07 000000474 INF: FPGA: Recv ZSGSRD 36011
17-03-18 04:51:29.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:29.524 -07 000000479 INF: FPGA: Recv ZSGSRD 36008
17-03-18 04:51:29.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:29.534 -07 000000461 INF: FPGA: Recv ZPIEZORD 31880
17-03-18 04:51:29.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:29.544 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 04:51:29.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36012 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36004 (-170.7 uncal um), Max = 36020 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:51:29.544 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36012, posNoise = 8, negNoise = 8
17-03-18 04:51:29.544 -07 000000610 INF: Z Motor: After move to -0.171659, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:29.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:51:29.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:29.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:29.544 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:29.544 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:29.544 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:29.544 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:29.544 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:29.544 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:29.544 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:29.544 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:29.544 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:29.544 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:51:29.554 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:29.554 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:29.564 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:51:29.564 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:51:29.574 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:51:29.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:29.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:51:29.574 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:29.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:51:29.584 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 04:51:29.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37676 150\n [Camera]
17-03-18 04:51:29.784 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:51:30.024 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.990831,
17-03-18 04:51:30.214 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:30.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:30.214 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:30.214 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:30.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:30.224 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:30.224 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:30.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:51:30.224 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:30.224 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:51:30.404 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37676 813
17-03-18 04:51:30.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:30.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:51:30.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:51:30.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:30.624 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:51:30.624 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:51:30.624 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:30.624 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:30.624 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:51:30.624 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:30.634 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:51:30.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:30.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:30.764 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:30.764 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:30.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:30.764 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:30.904 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:30.904 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:51:30.904 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:30.904 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:51:30.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:51:30.954 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:30.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37676 150' command took 4 ms to send, 1357 ms to get response, and 1368 ms overall
17-03-18 04:51:30.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:30.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171672079660231. ------
17-03-18 04:51:30.964 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:30.964 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17779 mm
17-03-18 04:51:30.964 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:30.964 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38838, sync = True, waitForSettling = False)
17-03-18 04:51:30.964 -07 000000461 INF: Z Motor: Moving to -0.177789 mm, started at -0.171672 mm, distance = -6.12 um
17-03-18 04:51:30.964 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:30.964 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:51:30.964 -07 000000625 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 04:51:30.974 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:30.974 -07 000000461 INF: FPGA: Xmit ZDACW 38838\n [Z Motor]
17-03-18 04:51:30.974 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:51:30.984 -07 000000461 INF: FPGA: 'ZDACW 38838' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:51:30.984 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:30.984 -07 000000618 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:51:30.994 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:30.994 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:51:30.994 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:30.994 -07 000000625 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:30.994 -07 000000625 INF: Y Motor: Moving 1333 steps0
17-03-18 04:51:31.004 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:31.004 -07 000000382 INF: FPGA: Recv ZDACR 38838
17-03-18 04:51:31.014 -07 000000461 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:31.014 -07 000000461 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:51:31.014 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:31.194 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:31.194 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:51:31.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:51:31.294 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:51:31.294 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:31.294 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:51:31.294 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:51:31.294 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:31.294 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:31.294 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 04:51:31.294 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:31.304 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 04:51:31.384 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 04:51:31.384 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:51:31.424 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:31.434 -07 000000579 INF: FPGA: Recv YRDPOS 124378
17-03-18 04:51:31.434 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:51:31.434 -07 000000625 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:31.434 -07 000000625 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:51:31.434 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.833 mm, average velocity = 2.093 mm/sec
17-03-18 04:51:31.704 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:32.384 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:32.384 -07 000000608 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:51:32.394 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:32.394 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:32.424 -07 000000625 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:32.424 -07 000000625 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:51:32.424 -07 000000625 INF: Y Motor: Moved to 60.7319 after 1456 ms (table move)
17-03-18 04:51:32.424 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177789 mm (DAC = 38838)
17-03-18 04:51:32.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.424 -07 000000461 INF: FPGA: Recv ZSGSRD 36963
17-03-18 04:51:32.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:51:32.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.434 -07 000000382 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:51:32.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.444 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.444 -07 000000569 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:51:32.454 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.454 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.454 -07 000000467 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:51:32.464 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.464 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.464 -07 000000606 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:51:32.474 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.474 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.474 -07 000000502 INF: FPGA: Recv ZSGSRD 36961
17-03-18 04:51:32.484 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.484 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.484 -07 000000479 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:51:32.494 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.494 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.494 -07 000000625 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:51:32.504 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.504 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.504 -07 000000424 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:51:32.514 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.514 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:32.514 -07 000000467 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:51:32.524 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.524 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:32.524 -07 000000501 INF: FPGA: Recv ZPIEZORD 33123
17-03-18 04:51:32.534 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:32.534 -07 000000581 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.5 V.
17-03-18 04:51:32.534 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36965 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36962 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36961 (-176.9 uncal um), Max = 36972 (-176.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:51:32.534 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36965, posNoise = 7, negNoise = 4
17-03-18 04:51:32.534 -07 000000581 INF: Z Motor: After move to -0.177789, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:32.534 -07 000000581 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:51:32.534 -07 000000581 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:32.584 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:51:32.584 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:32.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:32.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:32.584 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:32.584 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:32.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:32.584 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:32.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:32.584 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:32.594 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:51:32.594 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:32.604 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:51:32.604 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:51:32.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:32.654 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:32.954 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:32.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:32.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:32.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 04:51:32.994 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:32.994 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:32.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:51:33.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:51:33.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:33.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:51:33.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:51:33.094 -07 000000569 INF: Autofocus start
17-03-18 04:51:33.094 -07 000000569 INF: MeasureProfile start
17-03-18 04:51:33.094 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:33.094 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:33.104 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:33.104 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:33.104 -07 000000569 INF: MeasureProfile done
17-03-18 04:51:33.104 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:51:33.104 -07 000000569 INF: Autofocus finished
17-03-18 04:51:33.304 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:33.304 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:51:33.304 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177794353831329. ----------
17-03-18 04:51:33.304 -07 000000610 INF: Cycle	130	Tile	2	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:33.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37370, sync = True, waitForSettling = True)
17-03-18 04:51:33.314 -07 000000610 INF: Z Motor: Moving to -0.171069 mm, started at -0.177794 mm, distance = 6.73 um
17-03-18 04:51:33.314 -07 000000610 INF: FPGA: Xmit ZDACW 37370\n [Z Motor]
17-03-18 04:51:33.314 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:51:33.324 -07 000000610 INF: FPGA: 'ZDACW 37370' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:33.324 -07 000000461 INF: FPGA: Recv ZDACR 37370
17-03-18 04:51:33.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:33.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.484 -07 000000447 INF: FPGA: Recv ZSGSRD 35915
17-03-18 04:51:33.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:33.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35925
17-03-18 04:51:33.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:51:33.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35918
17-03-18 04:51:33.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.524 -07 000000608 INF: FPGA: Recv ZSGSRD 35910
17-03-18 04:51:33.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.534 -07 000000382 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:51:33.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.544 -07 000000626 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:51:33.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.554 -07 000000474 INF: FPGA: Recv ZSGSRD 35924
17-03-18 04:51:33.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.564 -07 000000455 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:51:33.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:33.574 -07 000000480 INF: FPGA: Recv ZSGSRD 35922
17-03-18 04:51:33.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:33.584 -07 000000569 INF: FPGA: Recv ZPIEZORD 31739
17-03-18 04:51:33.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:33.594 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.2 V.
17-03-18 04:51:33.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35920 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35910 (-170.1 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:51:33.594 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35920, posNoise = 5, negNoise = 10
17-03-18 04:51:33.594 -07 000000610 INF: Z Motor: After move to -0.171069, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:33.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:51:33.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:33.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:33.594 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:33.594 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:33.594 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:33.594 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:33.594 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:33.594 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:33.594 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:33.594 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:33.594 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:33.594 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:33.604 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:33.604 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:33.604 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:51:33.604 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:33.614 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:51:33.614 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:51:33.614 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:51:33.614 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:51:33.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37547 150\n [Camera]
17-03-18 04:51:33.824 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:51:34.244 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:34.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:34.254 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:34.254 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:34.254 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:51:34.254 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:34.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:34.254 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:34.254 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:34.254 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2638694096, 0x0, 418435064) start.
17-03-18 04:51:34.444 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37547 813
17-03-18 04:51:34.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:34.654 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:51:34.654 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:51:34.654 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:34.654 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2638694096, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:51:34.654 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:51:34.654 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:34.654 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:34.654 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:51:34.654 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:34.664 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:51:34.794 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:34.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:34.794 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:34.794 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:34.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:51:34.804 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:34.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:34.804 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:34.804 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:34.804 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:51:34.984 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:51:34.994 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:34.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37547 150' command took 2 ms to send, 1360 ms to get response, and 1371 ms overall
17-03-18 04:51:34.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:34.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171081052143189. ------
17-03-18 04:51:35.114 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17785 mm
17-03-18 04:51:35.114 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:35.114 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38852, sync = True, waitForSettling = False)
17-03-18 04:51:35.114 -07 000000480 INF: Z Motor: Moving to -0.177853 mm, started at -0.171081 mm, distance = -6.77 um
17-03-18 04:51:35.114 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:51:35.114 -07 000000569 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:51:35.124 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:35.124 -07 000000461 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:51:35.134 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:51:35.134 -07 000000569 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:35.134 -07 000000569 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:35.134 -07 000000569 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:51:35.144 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:35.144 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:35.154 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:51:35.154 -07 000000480 INF: FPGA: Xmit ZDACW 38852\n [Z Motor]
17-03-18 04:51:35.154 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:51:35.164 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:35.164 -07 000000480 INF: FPGA: 'ZDACW 38852' command took 0 ms to send, 0 ms to get response, and 44 ms overall
17-03-18 04:51:35.184 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:35.194 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:35.194 -07 000000501 INF: FPGA: Recv ZDACR 38852
17-03-18 04:51:35.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:51:35.194 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:51:35.194 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:35.194 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:51:35.194 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:51:35.194 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:35.204 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:51:35.204 -07 000000480 INF: Z Motor: MoveAbsStepped took 85 ms (did NOT wait for settling yet))
17-03-18 04:51:35.204 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:35.204 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-18 04:51:35.204 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:51:35.214 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:51:35.384 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:35.384 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:51:35.434 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.000345,
17-03-18 04:51:35.534 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 04:51:35.534 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 04:51:35.584 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:35.594 -07 000000382 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:51:35.594 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:51:35.594 -07 000000569 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:35.594 -07 000000569 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:51:35.594 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.841 mm, average velocity = 2.066 mm/sec
17-03-18 04:51:36.544 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:36.544 -07 000000606 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:51:36.554 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.554 -07 000000569 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:36.584 -07 000000569 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:36.584 -07 000000569 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:51:36.584 -07 000000569 INF: Y Motor: Moved to 61.5625 after 1465 ms (table move)
17-03-18 04:51:36.584 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177853 mm (DAC = 38852)
17-03-18 04:51:36.584 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:51:36.594 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:51:36.594 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.594 -07 000000626 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:51:36.604 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.604 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.604 -07 000000461 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:51:36.614 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.614 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.614 -07 000000447 INF: FPGA: Recv ZSGSRD 36976
17-03-18 04:51:36.624 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.624 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.624 -07 000000606 INF: FPGA: Recv ZSGSRD 36982
17-03-18 04:51:36.634 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.634 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.634 -07 000000455 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:51:36.644 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:51:36.644 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.644 -07 000000424 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:51:36.654 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.654 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.654 -07 000000626 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:51:36.664 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.664 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.664 -07 000000501 INF: FPGA: Recv ZSGSRD 36975
17-03-18 04:51:36.674 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.674 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:36.674 -07 000000447 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:51:36.684 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.684 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:36.684 -07 000000608 INF: FPGA: Recv ZPIEZORD 33154
17-03-18 04:51:36.694 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:36.694 -07 000000474 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.5 V.
17-03-18 04:51:36.694 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36975 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36966 (-176.9 uncal um), Max = 36982 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:51:36.694 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36975, posNoise = 7, negNoise = 9
17-03-18 04:51:36.694 -07 000000474 INF: Z Motor: After move to -0.177853, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:36.694 -07 000000474 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:51:36.694 -07 000000474 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:36.704 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:36.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:36.744 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:51:36.744 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:36.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:36.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:36.744 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:36.744 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:36.744 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:36.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:36.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:51:36.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:36.754 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:51:36.754 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:36.754 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:51:36.754 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:51:36.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:36.804 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:37.104 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:37.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:37.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:37.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:51:37.144 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:37.144 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:37.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:51:37.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:51:37.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:37.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:51:37.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:51:37.244 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:37.244 -07 000000625 INF: Autofocus start
17-03-18 04:51:37.244 -07 000000625 INF: MeasureProfile start
17-03-18 04:51:37.244 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:37.254 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:37.254 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:37.254 -07 000000625 INF: MeasureProfile done
17-03-18 04:51:37.254 -07 000000625 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:51:37.254 -07 000000625 INF: Autofocus finished
17-03-18 04:51:37.454 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:37.454 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:51:37.454 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177858595952746. ----------
17-03-18 04:51:37.454 -07 000000610 INF: Cycle	130	Tile	3	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:37.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37349, sync = True, waitForSettling = True)
17-03-18 04:51:37.464 -07 000000610 INF: Z Motor: Moving to -0.170973 mm, started at -0.177859 mm, distance = 6.89 um
17-03-18 04:51:37.464 -07 000000610 INF: FPGA: Xmit ZDACW 37349\n [Z Motor]
17-03-18 04:51:37.464 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:51:37.474 -07 000000610 INF: FPGA: 'ZDACW 37349' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:51:37.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:37.474 -07 000000467 INF: FPGA: Recv ZDACR 37349
17-03-18 04:51:37.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:37.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.634 -07 000000461 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:51:37.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35901
17-03-18 04:51:37.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.654 -07 000000626 INF: FPGA: Recv ZSGSRD 35914
17-03-18 04:51:37.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.664 -07 000000625 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:51:37.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35902
17-03-18 04:51:37.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.684 -07 000000608 INF: FPGA: Recv ZSGSRD 35899
17-03-18 04:51:37.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.694 -07 000000480 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:51:37.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35914
17-03-18 04:51:37.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.714 -07 000000581 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:51:37.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:37.724 -07 000000474 INF: FPGA: Recv ZSGSRD 35894
17-03-18 04:51:37.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:37.734 -07 000000606 INF: FPGA: Recv ZPIEZORD 31698
17-03-18 04:51:37.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:37.744 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.3 V.
17-03-18 04:51:37.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35905 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35903 (-170.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35894 (-170.0 uncal um), Max = 35914 (-170.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:51:37.744 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35905, posNoise = 9, negNoise = 11
17-03-18 04:51:37.744 -07 000000610 INF: Z Motor: After move to -0.170973, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:37.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:51:37.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:37.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:37.744 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:37.744 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:37.744 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:37.744 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:37.744 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:37.744 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:37.744 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:51:37.744 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:37.744 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:37.744 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:37.754 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:37.754 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:37.754 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:51:37.754 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:37.764 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:51:37.764 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:51:37.764 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:51:37.764 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:51:37.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37526 150\n [Camera]
17-03-18 04:51:37.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:51:38.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:38.404 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:38.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:38.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:38.404 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:38.404 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:38.404 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:38.404 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:51:38.414 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:38.414 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:51:38.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37526 813
17-03-18 04:51:38.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:38.794 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:51:38.794 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:51:38.794 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:38.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:51:38.794 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:51:38.794 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:38.794 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:38.794 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:38.794 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:51:38.804 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:51:38.944 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:38.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:38.944 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:38.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:38.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:38.944 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:38.944 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:38.944 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:51:38.954 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:38.954 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:51:39.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:51:39.134 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:39.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37526 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:51:39.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:39.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.170984688961062. ------
17-03-18 04:51:39.134 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:39.134 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17720 mm
17-03-18 04:51:39.134 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:39.144 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:51:39.144 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38710, sync = True, waitForSettling = False)
17-03-18 04:51:39.144 -07 000000455 INF: Z Motor: Moving to -0.177203 mm, started at -0.170985 mm, distance = -6.22 um
17-03-18 04:51:39.144 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:39.144 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:51:39.144 -07 000000455 INF: FPGA: Xmit ZDACW 38710\n [Z Motor]
17-03-18 04:51:39.144 -07 000000467 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:51:39.144 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:51:39.154 -07 000000455 INF: FPGA: 'ZDACW 38710' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:51:39.154 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:39.154 -07 000000569 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:51:39.164 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:39.164 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:51:39.164 -07 000000467 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:39.164 -07 000000467 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:39.164 -07 000000467 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:51:39.174 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:39.174 -07 000000512 INF: FPGA: Recv ZDACR 38710
17-03-18 04:51:39.184 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:39.184 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:39.184 -07 000000455 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:51:39.344 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:51:39.344 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:51:39.344 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:39.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:51:39.344 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:51:39.344 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:39.354 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:39.354 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:51:39.354 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:51:39.364 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:51:39.364 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:39.364 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:51:39.554 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:51:39.554 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:51:39.604 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:39.614 -07 000000461 INF: FPGA: Recv YRDPOS 127783
17-03-18 04:51:39.614 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:51:39.614 -07 000000467 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:39.614 -07 000000467 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:51:39.614 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 04:51:40.564 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:40.564 -07 000000625 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:51:40.574 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.574 -07 000000467 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:40.604 -07 000000467 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:40.604 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:51:40.604 -07 000000467 INF: Y Motor: Moved to 62.3945 after 1461 ms (table move)
17-03-18 04:51:40.604 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177203 mm (DAC = 38710)
17-03-18 04:51:40.604 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.614 -07 000000618 INF: FPGA: Recv ZSGSRD 36883
17-03-18 04:51:40.614 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:51:40.614 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.614 -07 000000569 INF: FPGA: Recv ZSGSRD 36884
17-03-18 04:51:40.624 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.624 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.624 -07 000000606 INF: FPGA: Recv ZSGSRD 36872
17-03-18 04:51:40.634 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.634 -07 000000608 INF: FPGA: Recv ZSGSRD 36866
17-03-18 04:51:40.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.644 -07 000000625 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:51:40.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.654 -07 000000626 INF: FPGA: Recv ZSGSRD 36874
17-03-18 04:51:40.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.664 -07 000000480 INF: FPGA: Recv ZSGSRD 36873
17-03-18 04:51:40.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.674 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.674 -07 000000455 INF: FPGA: Recv ZSGSRD 36874
17-03-18 04:51:40.684 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.684 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36881
17-03-18 04:51:40.694 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.694 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:40.694 -07 000000467 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:51:40.704 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.704 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:40.704 -07 000000512 INF: FPGA: Recv ZPIEZORD 33042
17-03-18 04:51:40.714 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:40.714 -07 000000501 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.5 V.
17-03-18 04:51:40.714 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36876 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36875 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36866 (-176.3 uncal um), Max = 36884 (-176.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:51:40.714 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36876, posNoise = 8, negNoise = 10
17-03-18 04:51:40.714 -07 000000501 INF: Z Motor: After move to -0.177203, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:40.714 -07 000000501 INF: Z Motor: Settle wait time = 1466 ms, measure time = 103 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:51:40.714 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:40.764 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:51:40.764 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:40.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:40.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:40.764 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:40.764 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:40.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:40.764 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:40.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:51:40.764 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:40.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:51:40.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:40.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:51:40.774 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:51:40.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:40.834 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:51:40.854 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.016692,
17-03-18 04:51:41.134 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:51:41.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:51:41.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:41.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2655569160, 0x0, 559484976) start.
17-03-18 04:51:41.164 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:41.164 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:41.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:51:41.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2655569160, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:51:41.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:41.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:51:41.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:51:41.264 -07 000000479 INF: Autofocus start
17-03-18 04:51:41.264 -07 000000479 INF: MeasureProfile start
17-03-18 04:51:41.264 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:41.264 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:41.274 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:41.274 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:41.284 -07 000000479 INF: MeasureProfile done
17-03-18 04:51:41.284 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:51:41.284 -07 000000479 INF: Autofocus finished
17-03-18 04:51:41.474 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:41.474 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:51:41.484 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177222598950712. ----------
17-03-18 04:51:41.484 -07 000000610 INF: Cycle	130	Tile	4	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:41.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37225, sync = True, waitForSettling = True)
17-03-18 04:51:41.484 -07 000000610 INF: Z Motor: Moving to -0.170405 mm, started at -0.177223 mm, distance = 6.82 um
17-03-18 04:51:41.484 -07 000000610 INF: FPGA: Xmit ZDACW 37225\n [Z Motor]
17-03-18 04:51:41.494 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:51:41.494 -07 000000610 INF: FPGA: 'ZDACW 37225' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:51:41.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:41.494 -07 000000502 INF: FPGA: Recv ZDACR 37225
17-03-18 04:51:41.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:51:41.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:41.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35818
17-03-18 04:51:41.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:41.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.664 -07 000000455 INF: FPGA: Recv ZSGSRD 35821
17-03-18 04:51:41.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35820
17-03-18 04:51:41.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.684 -07 000000447 INF: FPGA: Recv ZSGSRD 35815
17-03-18 04:51:41.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.694 -07 000000625 INF: FPGA: Recv ZSGSRD 35816
17-03-18 04:51:41.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.704 -07 000000581 INF: FPGA: Recv ZSGSRD 35818
17-03-18 04:51:41.704 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:41.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:41.714 -07 000000625 INF: FPGA: Recv ZSGSRD 35821
17-03-18 04:51:41.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.724 -07 000000581 INF: FPGA: Recv ZSGSRD 35820
17-03-18 04:51:41.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.734 -07 000000479 INF: FPGA: Recv ZSGSRD 35814
17-03-18 04:51:41.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:41.744 -07 000000467 INF: FPGA: Recv ZSGSRD 35815
17-03-18 04:51:41.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:41.754 -07 000000579 INF: FPGA: Recv ZPIEZORD 31587
17-03-18 04:51:41.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:41.764 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.3 V.
17-03-18 04:51:41.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35818 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35818 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35814 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:51:41.764 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35818, posNoise = 3, negNoise = 4
17-03-18 04:51:41.764 -07 000000610 INF: Z Motor: After move to -0.170405, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:41.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 04:51:41.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:41.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:41.764 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:41.764 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:41.764 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:41.764 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:41.764 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:41.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:41.764 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:41.764 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:41.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:41.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:41.774 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:41.774 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:41.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:51:41.774 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:41.784 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:51:41.784 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:51:41.784 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:51:41.784 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:51:41.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37402 150\n [Camera]
17-03-18 04:51:41.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:51:42.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:42.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:42.414 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:42.414 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:42.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:51:42.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:42.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:42.414 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:42.414 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:42.414 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:51:42.604 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37402 813
17-03-18 04:51:42.754 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:42.814 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:51:42.814 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:51:42.814 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:42.814 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:42.814 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:51:42.814 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:51:42.814 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:51:42.814 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:42.824 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:42.824 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:51:42.964 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:42.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:42.964 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:42.964 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:42.964 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:51:42.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:42.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:42.964 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:42.964 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:42.964 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:51:43.154 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:51:43.154 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:43.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37402 150' command took 4 ms to send, 1355 ms to get response, and 1369 ms overall
17-03-18 04:51:43.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:43.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170425782504729. ------
17-03-18 04:51:43.284 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17703 mm
17-03-18 04:51:43.284 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:43.284 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:43.284 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:51:43.284 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:51:43.284 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38671, sync = True, waitForSettling = False)
17-03-18 04:51:43.284 -07 000000382 INF: Z Motor: Moving to -0.177024 mm, started at -0.170426 mm, distance = -6.60 um
17-03-18 04:51:43.284 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:43.294 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:43.294 -07 000000382 INF: FPGA: Xmit ZDACW 38671\n [Z Motor]
17-03-18 04:51:43.294 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:51:43.304 -07 000000382 INF: FPGA: 'ZDACW 38671' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:51:43.304 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:43.304 -07 000000569 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:51:43.314 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:51:43.314 -07 000000626 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:43.314 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:43.314 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-18 04:51:43.314 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:43.324 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:43.324 -07 000000569 INF: FPGA: Recv ZDACR 38671
17-03-18 04:51:43.334 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:43.334 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:43.334 -07 000000382 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:51:43.364 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:51:43.364 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:51:43.364 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:43.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:51:43.364 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:51:43.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:43.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:43.374 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:51:43.374 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:51:43.374 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:51:43.514 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:43.514 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:51:43.704 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:51:43.704 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:51:43.754 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:43.764 -07 000000581 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:51:43.764 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:51:43.764 -07 000000626 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:43.764 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:51:43.764 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 04:51:44.714 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:44.714 -07 000000608 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:51:44.724 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:44.724 -07 000000626 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:44.754 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:44.754 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:51:44.754 -07 000000626 INF: Y Motor: Moved to 63.2227 after 1471 ms (table move)
17-03-18 04:51:44.764 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177024 mm (DAC = 38671)
17-03-18 04:51:44.764 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.764 -07 000000581 INF: FPGA: Recv ZSGSRD 36847
17-03-18 04:51:44.774 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.774 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.774 -07 000000608 INF: FPGA: Recv ZSGSRD 36848
17-03-18 04:51:44.784 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.784 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.784 -07 000000625 INF: FPGA: Recv ZSGSRD 36848
17-03-18 04:51:44.794 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.794 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.794 -07 000000502 INF: FPGA: Recv ZSGSRD 36847
17-03-18 04:51:44.804 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.804 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.804 -07 000000382 INF: FPGA: Recv ZSGSRD 36844
17-03-18 04:51:44.814 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.814 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.814 -07 000000581 INF: FPGA: Recv ZSGSRD 36844
17-03-18 04:51:44.824 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.824 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.824 -07 000000455 INF: FPGA: Recv ZSGSRD 36842
17-03-18 04:51:44.834 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.834 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.834 -07 000000625 INF: FPGA: Recv ZSGSRD 36842
17-03-18 04:51:44.844 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.844 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.844 -07 000000579 INF: FPGA: Recv ZSGSRD 36849
17-03-18 04:51:44.854 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.854 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:44.854 -07 000000626 INF: FPGA: Recv ZSGSRD 36849
17-03-18 04:51:44.864 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.864 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:44.864 -07 000000382 INF: FPGA: Recv ZPIEZORD 32953
17-03-18 04:51:44.874 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:44.874 -07 000000480 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.901 V. Piezo Error = -8.6 V.
17-03-18 04:51:44.874 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36846 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36847 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36842 (-176.1 uncal um), Max = 36849 (-176.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:51:44.874 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36846, posNoise = 3, negNoise = 4
17-03-18 04:51:44.874 -07 000000480 INF: Z Motor: After move to -0.177024, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:44.874 -07 000000480 INF: Z Motor: Settle wait time = 1474 ms, measure time = 110 ms (allowed 150 ms), total time = 1584 ms
17-03-18 04:51:44.874 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:44.914 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:51:44.914 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:44.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:44.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:44.914 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:44.914 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:44.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:44.914 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:44.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:44.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:44.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:44.924 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:44.924 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:51:44.924 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:51:44.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:44.974 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:45.274 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:45.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:45.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:45.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:51:45.314 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:45.314 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:45.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:51:45.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:51:45.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:45.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:51:45.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:51:45.414 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:45.414 -07 000000382 INF: Autofocus start
17-03-18 04:51:45.414 -07 000000382 INF: MeasureProfile start
17-03-18 04:51:45.414 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:45.424 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:45.424 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:45.434 -07 000000382 INF: MeasureProfile done
17-03-18 04:51:45.434 -07 000000382 INF: X=-32  Z correction [um]=-0.2344
17-03-18 04:51:45.434 -07 000000382 INF: Autofocus finished
17-03-18 04:51:45.624 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:45.624 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:51:45.624 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.177029872586459. ----------
17-03-18 04:51:45.634 -07 000000610 INF: Cycle	130	Tile	5	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:45.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37133, sync = True, waitForSettling = True)
17-03-18 04:51:45.634 -07 000000610 INF: Z Motor: Moving to -0.169984 mm, started at -0.177030 mm, distance = 7.05 um
17-03-18 04:51:45.634 -07 000000610 INF: FPGA: Xmit ZDACW 37133\n [Z Motor]
17-03-18 04:51:45.634 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:51:45.644 -07 000000610 INF: FPGA: 'ZDACW 37133' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:45.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:45.644 -07 000000608 INF: FPGA: Recv ZDACR 37133
17-03-18 04:51:45.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:45.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.804 -07 000000382 INF: FPGA: Recv ZSGSRD 35755
17-03-18 04:51:45.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.814 -07 000000501 INF: FPGA: Recv ZSGSRD 35754
17-03-18 04:51:45.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35751
17-03-18 04:51:45.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.834 -07 000000626 INF: FPGA: Recv ZSGSRD 35755
17-03-18 04:51:45.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.844 -07 000000502 INF: FPGA: Recv ZSGSRD 35753
17-03-18 04:51:45.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.854 -07 000000455 INF: FPGA: Recv ZSGSRD 35750
17-03-18 04:51:45.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35758
17-03-18 04:51:45.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.874 -07 000000480 INF: FPGA: Recv ZSGSRD 35750
17-03-18 04:51:45.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.884 -07 000000581 INF: FPGA: Recv ZSGSRD 35749
17-03-18 04:51:45.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:45.914 -07 000000608 INF: FPGA: Recv ZSGSRD 35748
17-03-18 04:51:45.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:45.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:45.924 -07 000000581 INF: FPGA: Recv ZPIEZORD 31546
17-03-18 04:51:45.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:45.934 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.3 V.
17-03-18 04:51:45.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35752 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35752 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35748 (-169.1 uncal um), Max = 35758 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:51:45.934 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35752, posNoise = 6, negNoise = 4
17-03-18 04:51:45.934 -07 000000610 INF: Z Motor: After move to -0.169984, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:45.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-18 04:51:45.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:45.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:45.934 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:45.934 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:45.934 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:45.934 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:45.934 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:45.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:45.934 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:51:45.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:45.934 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:45.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:45.944 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:51:45.944 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:45.944 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:45.944 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:45.954 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:51:45.954 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:51:45.954 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:51:45.954 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:51:45.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37309 150\n [Camera]
17-03-18 04:51:46.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:51:46.224 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.004458,
17-03-18 04:51:46.594 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:46.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:46.594 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:46.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:46.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:46.604 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:46.604 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:46.604 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:51:46.604 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:46.604 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:51:46.704 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:46.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:46.794 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37309 816
17-03-18 04:51:46.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:46.994 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:51:46.994 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:51:46.994 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:46.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:51:46.994 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:51:46.994 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:47.004 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:47.004 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:51:47.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:47.014 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:51:47.144 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:47.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:47.144 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:47.144 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:47.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:47.154 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:47.154 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:47.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:51:47.164 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:47.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:51:47.334 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:51:47.334 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:47.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37309 150' command took 2 ms to send, 1358 ms to get response, and 1373 ms overall
17-03-18 04:51:47.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:47.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170001784503373. ------
17-03-18 04:51:47.344 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:47.344 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17634 mm
17-03-18 04:51:47.344 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:47.344 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:51:47.464 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 04:51:47.464 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:47.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 122 ms overall
17-03-18 04:51:47.464 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38521, sync = True, waitForSettling = False)
17-03-18 04:51:47.464 -07 000000502 INF: Z Motor: Moving to -0.176338 mm, started at -0.170002 mm, distance = -6.34 um
17-03-18 04:51:47.464 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:47.474 -07 000000502 INF: FPGA: Xmit ZDACW 38521\n [Z Motor]
17-03-18 04:51:47.474 -07 000000480 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:51:47.474 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:51:47.474 -07 000000626 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:47.474 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:47.474 -07 000000626 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:51:47.474 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:51:47.484 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:47.484 -07 000000502 INF: FPGA: 'ZDACW 38521' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:51:47.494 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:47.504 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:47.504 -07 000000501 INF: FPGA: Recv ZDACR 38521
17-03-18 04:51:47.514 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:47.514 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:51:47.554 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:51:47.554 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:51:47.554 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:47.554 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:51:47.554 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:51:47.554 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:47.554 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:47.554 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:47.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:51:47.564 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:51:47.684 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:47.684 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 214 ms overall
17-03-18 04:51:47.864 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:51:47.864 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 04:51:47.914 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:47.924 -07 000000512 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:51:47.924 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:51:47.924 -07 000000626 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:47.924 -07 000000626 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:51:47.924 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.840 mm, average velocity = 2.121 mm/sec
17-03-18 04:51:48.874 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:48.874 -07 000000480 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:51:48.884 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:48.884 -07 000000626 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:48.904 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:48.904 -07 000000626 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:51:48.904 -07 000000626 INF: Y Motor: Moved to 64.0557 after 1443 ms (table move)
17-03-18 04:51:48.914 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176338 mm (DAC = 38521)
17-03-18 04:51:48.914 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.914 -07 000000502 INF: FPGA: Recv ZSGSRD 36731
17-03-18 04:51:48.924 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:48.924 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.924 -07 000000455 INF: FPGA: Recv ZSGSRD 36743
17-03-18 04:51:48.934 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.934 -07 000000581 INF: FPGA: Recv ZSGSRD 36737
17-03-18 04:51:48.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.944 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.944 -07 000000606 INF: FPGA: Recv ZSGSRD 36734
17-03-18 04:51:48.954 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.954 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.954 -07 000000579 INF: FPGA: Recv ZSGSRD 36732
17-03-18 04:51:48.964 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.964 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.964 -07 000000474 INF: FPGA: Recv ZSGSRD 36744
17-03-18 04:51:48.974 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.974 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.974 -07 000000467 INF: FPGA: Recv ZSGSRD 36738
17-03-18 04:51:48.984 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.984 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.984 -07 000000581 INF: FPGA: Recv ZSGSRD 36741
17-03-18 04:51:48.994 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:48.994 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:48.994 -07 000000608 INF: FPGA: Recv ZSGSRD 36743
17-03-18 04:51:49.004 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:49.004 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:49.004 -07 000000480 INF: FPGA: Recv ZSGSRD 36744
17-03-18 04:51:49.014 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:49.014 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:49.014 -07 000000474 INF: FPGA: Recv ZPIEZORD 32846
17-03-18 04:51:49.024 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:49.024 -07 000000447 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.6 V.
17-03-18 04:51:49.024 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36739 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36740 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36744 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:51:49.024 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36739, posNoise = 5, negNoise = 8
17-03-18 04:51:49.024 -07 000000447 INF: Z Motor: After move to -0.176338, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:49.024 -07 000000447 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-18 04:51:49.024 -07 000000447 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:49.074 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 04:51:49.074 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:49.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:49.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:49.074 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:49.074 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:49.074 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:49.074 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:49.074 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:49.074 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:49.084 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:51:49.084 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:49.094 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:51:49.094 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:51:49.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:49.144 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:49.444 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:49.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:49.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:49.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:51:49.484 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:49.484 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:49.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:51:49.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:51:49.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:49.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:51:49.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:51:49.584 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:49.584 -07 000000618 INF: Autofocus start
17-03-18 04:51:49.584 -07 000000618 INF: MeasureProfile start
17-03-18 04:51:49.584 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:49.594 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:51:49.594 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:49.594 -07 000000618 INF: MeasureProfile done
17-03-18 04:51:49.594 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:51:49.594 -07 000000618 INF: Autofocus finished
17-03-18 04:51:49.794 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:49.794 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:51:49.794 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176342481887291. ----------
17-03-18 04:51:49.804 -07 000000610 INF: Cycle	130	Tile	6	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:49.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37054, sync = True, waitForSettling = True)
17-03-18 04:51:49.804 -07 000000610 INF: Z Motor: Moving to -0.169622 mm, started at -0.176342 mm, distance = 6.72 um
17-03-18 04:51:49.804 -07 000000610 INF: FPGA: Xmit ZDACW 37054\n [Z Motor]
17-03-18 04:51:49.804 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:51:49.814 -07 000000610 INF: FPGA: 'ZDACW 37054' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:49.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:49.814 -07 000000424 INF: FPGA: Recv ZDACR 37054
17-03-18 04:51:49.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:49.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:49.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:49.974 -07 000000625 INF: FPGA: Recv ZSGSRD 35694
17-03-18 04:51:49.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:49.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:49.984 -07 000000447 INF: FPGA: Recv ZSGSRD 35695
17-03-18 04:51:49.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:49.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:49.994 -07 000000581 INF: FPGA: Recv ZSGSRD 35690
17-03-18 04:51:50.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.004 -07 000000479 INF: FPGA: Recv ZSGSRD 35698
17-03-18 04:51:50.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.014 -07 000000502 INF: FPGA: Recv ZSGSRD 35701
17-03-18 04:51:50.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.024 -07 000000467 INF: FPGA: Recv ZSGSRD 35696
17-03-18 04:51:50.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.034 -07 000000626 INF: FPGA: Recv ZSGSRD 35695
17-03-18 04:51:50.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.044 -07 000000382 INF: FPGA: Recv ZSGSRD 35692
17-03-18 04:51:50.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.054 -07 000000474 INF: FPGA: Recv ZSGSRD 35689
17-03-18 04:51:50.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:50.064 -07 000000424 INF: FPGA: Recv ZSGSRD 35697
17-03-18 04:51:50.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:50.074 -07 000000579 INF: FPGA: Recv ZPIEZORD 31454
17-03-18 04:51:50.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:50.084 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -9.3 V.
17-03-18 04:51:50.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35695 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35695 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35689 (-168.7 uncal um), Max = 35701 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:51:50.084 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35695, posNoise = 6, negNoise = 6
17-03-18 04:51:50.084 -07 000000610 INF: Z Motor: After move to -0.169622, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:50.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:51:50.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:50.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:50.084 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:50.084 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:50.084 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:50.084 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:50.084 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:50.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:50.084 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:51:50.084 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:50.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:50.084 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:50.094 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:50.094 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:50.094 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:51:50.094 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:50.104 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:51:50.104 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:51:50.104 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:51:50.104 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:51:50.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37231 150\n [Camera]
17-03-18 04:51:50.304 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:51:50.734 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-18 04:51:50.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-18 04:51:50.734 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:50.734 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-18 04:51:50.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-18 04:51:50.734 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:50.744 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:50.744 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:51:50.744 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:50.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:51:50.924 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37231 813
17-03-18 04:51:51.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:51.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:51:51.114 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:51:51.114 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:51.114 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:51:51.114 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:51:51.114 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:51.124 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:51:51.124 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:51.124 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:51:51.124 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:51:51.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:51.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:51.284 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:51.284 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:51.284 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:51:51.284 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:51.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:51.284 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:51.284 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:51.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2638694096, 0x0, 418435064) start.
17-03-18 04:51:51.474 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:51:51.474 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:51.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37231 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:51:51.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:51.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169635604411292. ------
17-03-18 04:51:51.474 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:51.474 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17597 mm
17-03-18 04:51:51.474 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:51.484 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:51.484 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 04:51:51.484 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:51.484 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38440, sync = True, waitForSettling = False)
17-03-18 04:51:51.484 -07 000000455 INF: Z Motor: Moving to -0.175967 mm, started at -0.169636 mm, distance = -6.33 um
17-03-18 04:51:51.484 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:51:51.484 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:51:51.494 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:51.494 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:51:51.504 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:51:51.504 -07 000000569 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:51.504 -07 000000455 INF: FPGA: Xmit ZDACW 38440\n [Z Motor]
17-03-18 04:51:51.504 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:51:51.504 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:51.504 -07 000000569 INF: Y Motor: Moving 1338 steps-14
17-03-18 04:51:51.514 -07 000000455 INF: FPGA: 'ZDACW 38440' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:51:51.514 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:51.514 -07 000000625 INF: FPGA: Recv ZDACR 38440
17-03-18 04:51:51.524 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:51.524 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:51.524 -07 000000455 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:51:51.604 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.973092,
17-03-18 04:51:51.684 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:51:51.684 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:51:51.684 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:51.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2638694096, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:51:51.684 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:51:51.684 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:51.684 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:51.684 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 04:51:51.684 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:51:51.684 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:51:51.684 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:51:51.694 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:51:51.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:51.894 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:51:51.894 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:51:51.944 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:51.954 -07 000000479 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:51:51.954 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:51:51.954 -07 000000569 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:51.954 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:51:51.954 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-18 04:51:52.904 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:52.904 -07 000000625 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:51:52.914 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:52.914 -07 000000569 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:52.944 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:52.944 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:51:52.944 -07 000000569 INF: Y Motor: Moved to 64.8774 after 1459 ms (table move)
17-03-18 04:51:52.944 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175967 mm (DAC = 38440)
17-03-18 04:51:52.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:52.944 -07 000000581 INF: FPGA: Recv ZSGSRD 36672
17-03-18 04:51:52.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:51:52.954 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:52.954 -07 000000474 INF: FPGA: Recv ZSGSRD 36686
17-03-18 04:51:52.964 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:52.964 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:52.964 -07 000000606 INF: FPGA: Recv ZSGSRD 36678
17-03-18 04:51:52.974 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:52.974 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:52.974 -07 000000502 INF: FPGA: Recv ZSGSRD 36681
17-03-18 04:51:52.984 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:52.984 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:52.984 -07 000000467 INF: FPGA: Recv ZSGSRD 36686
17-03-18 04:51:52.994 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:52.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:52.994 -07 000000382 INF: FPGA: Recv ZSGSRD 36684
17-03-18 04:51:53.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.004 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:53.004 -07 000000455 INF: FPGA: Recv ZSGSRD 36682
17-03-18 04:51:53.014 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.014 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:53.014 -07 000000480 INF: FPGA: Recv ZSGSRD 36680
17-03-18 04:51:53.024 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:53.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36684
17-03-18 04:51:53.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:53.034 -07 000000474 INF: FPGA: Recv ZSGSRD 36681
17-03-18 04:51:53.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.044 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:53.044 -07 000000608 INF: FPGA: Recv ZPIEZORD 32815
17-03-18 04:51:53.054 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.054 -07 000000424 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.6 V.
17-03-18 04:51:53.054 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36681 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36682 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36672 (-175.0 uncal um), Max = 36686 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:51:53.054 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36681, posNoise = 5, negNoise = 9
17-03-18 04:51:53.054 -07 000000424 INF: Z Motor: After move to -0.175967, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:53.054 -07 000000424 INF: Z Motor: Settle wait time = 1463 ms, measure time = 103 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:51:53.054 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:53.104 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:51:53.104 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:53.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:53.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:53.104 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:53.104 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:53.104 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:53.104 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:53.104 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:51:53.104 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:53.114 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:51:53.114 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:53.114 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:51:53.114 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:51:53.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:53.164 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:53.464 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:53.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:53.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:53.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 04:51:53.504 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:53.504 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:53.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:51:53.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:51:53.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:53.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:51:53.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 04:51:53.604 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:53.604 -07 000000512 INF: Autofocus start
17-03-18 04:51:53.604 -07 000000512 INF: MeasureProfile start
17-03-18 04:51:53.604 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:53.614 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:51:53.614 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:53.624 -07 000000512 INF: MeasureProfile done
17-03-18 04:51:53.624 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:51:53.624 -07 000000512 INF: Autofocus finished
17-03-18 04:51:53.814 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:53.814 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:51:53.814 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175969877583069. ----------
17-03-18 04:51:53.824 -07 000000610 INF: Cycle	130	Tile	7	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:53.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36937, sync = True, waitForSettling = True)
17-03-18 04:51:53.824 -07 000000610 INF: Z Motor: Moving to -0.169087 mm, started at -0.175970 mm, distance = 6.88 um
17-03-18 04:51:53.824 -07 000000610 INF: FPGA: Xmit ZDACW 36937\n [Z Motor]
17-03-18 04:51:53.824 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:51:53.834 -07 000000610 INF: FPGA: 'ZDACW 36937' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:53.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:53.834 -07 000000625 INF: FPGA: Recv ZDACR 36937
17-03-18 04:51:53.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:53.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:53.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:53.994 -07 000000501 INF: FPGA: Recv ZSGSRD 35611
17-03-18 04:51:54.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.004 -07 000000424 INF: FPGA: Recv ZSGSRD 35614
17-03-18 04:51:54.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.014 -07 000000382 INF: FPGA: Recv ZSGSRD 35610
17-03-18 04:51:54.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.024 -07 000000579 INF: FPGA: Recv ZSGSRD 35609
17-03-18 04:51:54.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.034 -07 000000625 INF: FPGA: Recv ZSGSRD 35617
17-03-18 04:51:54.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.044 -07 000000502 INF: FPGA: Recv ZSGSRD 35611
17-03-18 04:51:54.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.054 -07 000000512 INF: FPGA: Recv ZSGSRD 35612
17-03-18 04:51:54.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.064 -07 000000581 INF: FPGA: Recv ZSGSRD 35610
17-03-18 04:51:54.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.074 -07 000000626 INF: FPGA: Recv ZSGSRD 35612
17-03-18 04:51:54.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:54.084 -07 000000467 INF: FPGA: Recv ZSGSRD 35606
17-03-18 04:51:54.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:54.094 -07 000000455 INF: FPGA: Recv ZPIEZORD 31369
17-03-18 04:51:54.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:54.104 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 04:51:54.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35611 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35611 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35606 (-168.2 uncal um), Max = 35617 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:51:54.104 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35611, posNoise = 6, negNoise = 5
17-03-18 04:51:54.104 -07 000000610 INF: Z Motor: After move to -0.169087, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:54.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:51:54.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:54.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:54.104 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:54.104 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:54.104 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:54.104 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:54.104 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:54.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:54.114 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:54.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:54.114 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:51:54.114 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:54.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:51:54.114 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:54.114 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:51:54.114 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:54.134 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:51:54.134 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:51:54.134 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:51:54.134 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:51:54.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37114 150\n [Camera]
17-03-18 04:51:54.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:51:54.764 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:54.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:54.764 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:54.764 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:54.764 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) start.
17-03-18 04:51:54.764 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:54.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:54.764 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:54.764 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:54.764 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:51:54.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37114 813
17-03-18 04:51:55.104 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:55.144 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:51:55.144 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:51:55.144 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:55.154 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:55.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:51:55.154 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:51:55.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:55.164 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:51:55.164 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:55.164 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:51:55.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:55.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:55.314 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:55.314 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:55.314 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:51:55.314 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:55.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:55.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:55.314 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:55.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:51:55.504 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:51:55.504 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:55.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37114 150' command took 4 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-18 04:51:55.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:55.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169095970591384. ------
17-03-18 04:51:55.634 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:55.634 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17583 mm
17-03-18 04:51:55.634 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:55.634 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:55.634 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:51:55.634 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 04:51:55.634 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38409, sync = True, waitForSettling = False)
17-03-18 04:51:55.634 -07 000000480 INF: Z Motor: Moving to -0.175825 mm, started at -0.169096 mm, distance = -6.73 um
17-03-18 04:51:55.644 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:55.644 -07 000000480 INF: FPGA: Xmit ZDACW 38409\n [Z Motor]
17-03-18 04:51:55.644 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:51:55.654 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:55.654 -07 000000480 INF: FPGA: 'ZDACW 38409' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:51:55.654 -07 000000618 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:51:55.664 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:55.664 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:51:55.664 -07 000000579 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:55.664 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:55.664 -07 000000579 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:51:55.674 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:55.674 -07 000000608 INF: FPGA: Recv ZDACR 38409
17-03-18 04:51:55.684 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:55.684 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:55.684 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:51:55.714 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:51:55.714 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:51:55.714 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:55.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:51:55.714 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:51:55.714 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:55.724 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:55.724 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:51:55.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 04:51:55.734 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:51:55.864 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:51:55.864 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:51:56.054 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:51:56.054 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:51:56.104 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:56.114 -07 000000581 INF: FPGA: Recv YRDPOS 134579
17-03-18 04:51:56.114 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:51:56.114 -07 000000579 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:56.114 -07 000000579 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:51:56.114 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 04:51:56.714 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:51:56.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:51:56.984 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.978563,
17-03-18 04:51:57.064 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:57.064 -07 000000467 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:51:57.074 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:57.074 -07 000000579 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:57.104 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:51:57.104 -07 000000579 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:51:57.104 -07 000000579 INF: Y Motor: Moved to 65.7129 after 1472 ms (table move)
17-03-18 04:51:57.114 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175825 mm (DAC = 38409)
17-03-18 04:51:57.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.114 -07 000000455 INF: FPGA: Recv ZSGSRD 36657
17-03-18 04:51:57.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:57.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.124 -07 000000618 INF: FPGA: Recv ZSGSRD 36657
17-03-18 04:51:57.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.134 -07 000000467 INF: FPGA: Recv ZSGSRD 36658
17-03-18 04:51:57.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.144 -07 000000479 INF: FPGA: Recv ZSGSRD 36652
17-03-18 04:51:57.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36655
17-03-18 04:51:57.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.164 -07 000000455 INF: FPGA: Recv ZSGSRD 36656
17-03-18 04:51:57.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.174 -07 000000606 INF: FPGA: Recv ZSGSRD 36665
17-03-18 04:51:57.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.184 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.184 -07 000000579 INF: FPGA: Recv ZSGSRD 36666
17-03-18 04:51:57.194 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.194 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.194 -07 000000480 INF: FPGA: Recv ZSGSRD 36660
17-03-18 04:51:57.204 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.204 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:57.204 -07 000000501 INF: FPGA: Recv ZSGSRD 36663
17-03-18 04:51:57.214 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.214 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:57.214 -07 000000455 INF: FPGA: Recv ZPIEZORD 32746
17-03-18 04:51:57.224 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:57.224 -07 000000382 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.7 V.
17-03-18 04:51:57.224 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36659 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36658 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36652 (-174.9 uncal um), Max = 36666 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:51:57.224 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36659, posNoise = 7, negNoise = 7
17-03-18 04:51:57.224 -07 000000382 INF: Z Motor: After move to -0.175825, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:57.224 -07 000000382 INF: Z Motor: Settle wait time = 1475 ms, measure time = 108 ms (allowed 150 ms), total time = 1583 ms
17-03-18 04:51:57.224 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:51:57.274 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 04:51:57.274 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:51:57.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:57.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:57.274 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:57.274 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:57.274 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:51:57.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:57.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:51:57.274 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:51:57.284 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:51:57.284 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:51:57.294 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:51:57.294 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:51:57.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:51:57.344 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:51:57.644 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:51:57.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:51:57.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:51:57.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:51:57.674 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:51:57.674 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:51:57.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:51:57.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:51:57.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:57.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:51:57.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:51:57.784 -07 000000474 INF: Autofocus start
17-03-18 04:51:57.784 -07 000000474 INF: MeasureProfile start
17-03-18 04:51:57.784 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:57.784 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:57.794 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:51:57.794 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:51:57.794 -07 000000474 INF: MeasureProfile done
17-03-18 04:51:57.794 -07 000000474 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:51:57.794 -07 000000474 INF: Autofocus finished
17-03-18 04:51:57.994 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:51:57.994 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:51:57.994 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.17582854491595. ----------
17-03-18 04:51:58.004 -07 000000610 INF: Cycle	130	Tile	8	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:51:58.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36889, sync = True, waitForSettling = True)
17-03-18 04:51:58.004 -07 000000610 INF: Z Motor: Moving to -0.168867 mm, started at -0.175829 mm, distance = 6.96 um
17-03-18 04:51:58.004 -07 000000610 INF: FPGA: Xmit ZDACW 36889\n [Z Motor]
17-03-18 04:51:58.004 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:51:58.014 -07 000000610 INF: FPGA: 'ZDACW 36889' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:51:58.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:58.014 -07 000000382 INF: FPGA: Recv ZDACR 36889
17-03-18 04:51:58.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:51:58.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.174 -07 000000447 INF: FPGA: Recv ZSGSRD 35578
17-03-18 04:51:58.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:51:58.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.184 -07 000000579 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:51:58.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.194 -07 000000608 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:51:58.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.204 -07 000000581 INF: FPGA: Recv ZSGSRD 35573
17-03-18 04:51:58.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.214 -07 000000480 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:51:58.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.224 -07 000000447 INF: FPGA: Recv ZSGSRD 35581
17-03-18 04:51:58.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:51:58.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.244 -07 000000474 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:51:58.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.254 -07 000000581 INF: FPGA: Recv ZSGSRD 35575
17-03-18 04:51:58.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:51:58.264 -07 000000467 INF: FPGA: Recv ZSGSRD 35574
17-03-18 04:51:58.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:51:58.274 -07 000000455 INF: FPGA: Recv ZPIEZORD 31312
17-03-18 04:51:58.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:51:58.284 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.4 V.
17-03-18 04:51:58.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35575 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:51:58.284 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 6, negNoise = 6
17-03-18 04:51:58.284 -07 000000610 INF: Z Motor: After move to -0.168867, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:51:58.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:51:58.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:51:58.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:51:58.284 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:51:58.284 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:51:58.284 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:51:58.284 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:51:58.284 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:51:58.284 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:51:58.284 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:51:58.284 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:51:58.284 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:51:58.284 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:51:58.294 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:51:58.294 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:51:58.294 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:51:58.294 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:51:58.294 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:51:58.294 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:51:58.304 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:51:58.304 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:51:58.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37066 150\n [Camera]
17-03-18 04:51:58.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:51:58.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:51:58.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:51:58.934 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:58.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:51:58.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:51:58.934 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:58.944 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:58.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:51:58.944 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:58.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:51:59.124 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37066 813
17-03-18 04:51:59.274 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:51:59.314 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:51:59.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:51:59.314 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:51:59.314 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:59.314 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:51:59.314 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:59.324 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:51:59.324 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:51:59.324 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:51:59.324 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:51:59.484 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:51:59.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:51:59.484 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:51:59.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:51:59.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:51:59.484 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:51:59.484 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:51:59.484 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:51:59.484 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:51:59.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:51:59.674 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:51:59.674 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:51:59.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37066 150' command took 4 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-18 04:51:59.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:51:59.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168864698954281. ------
17-03-18 04:51:59.794 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17531 mm
17-03-18 04:51:59.794 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:51:59.794 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:51:59.794 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:51:59.794 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:51:59.794 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38297, sync = True, waitForSettling = False)
17-03-18 04:51:59.794 -07 000000502 INF: Z Motor: Moving to -0.175312 mm, started at -0.168865 mm, distance = -6.45 um
17-03-18 04:51:59.794 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:51:59.804 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:51:59.804 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:51:59.804 -07 000000626 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:51:59.814 -07 000000502 INF: FPGA: Xmit ZDACW 38297\n [Z Motor]
17-03-18 04:51:59.814 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:51:59.814 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:51:59.814 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:51:59.814 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:51:59.814 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:51:59.824 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:51:59.824 -07 000000502 INF: FPGA: 'ZDACW 38297' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:51:59.834 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:51:59.844 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:51:59.844 -07 000000424 INF: FPGA: Recv ZDACR 38297
17-03-18 04:51:59.854 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:51:59.854 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:51:59.874 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:51:59.874 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:51:59.874 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:59.874 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:51:59.874 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:51:59.874 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:51:59.884 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:51:59.884 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:51:59.884 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:51:59.894 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:52:00.024 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:00.024 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:52:00.204 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:52:00.204 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 04:52:00.254 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:00.264 -07 000000461 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:52:00.264 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:52:00.264 -07 000000501 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:00.264 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:52:00.264 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:52:01.214 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:01.214 -07 000000467 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:52:01.224 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.224 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:01.254 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:01.254 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:52:01.254 -07 000000501 INF: Y Motor: Moved to 66.5381 after 1459 ms (table move)
17-03-18 04:52:01.264 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175312 mm (DAC = 38297)
17-03-18 04:52:01.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36585
17-03-18 04:52:01.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.274 -07 000000461 INF: FPGA: Recv ZSGSRD 36574
17-03-18 04:52:01.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.284 -07 000000581 INF: FPGA: Recv ZSGSRD 36577
17-03-18 04:52:01.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.294 -07 000000625 INF: FPGA: Recv ZSGSRD 36583
17-03-18 04:52:01.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36578
17-03-18 04:52:01.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.314 -07 000000502 INF: FPGA: Recv ZSGSRD 36581
17-03-18 04:52:01.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.324 -07 000000618 INF: FPGA: Recv ZSGSRD 36585
17-03-18 04:52:01.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.334 -07 000000512 INF: FPGA: Recv ZSGSRD 36581
17-03-18 04:52:01.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.344 -07 000000625 INF: FPGA: Recv ZSGSRD 36578
17-03-18 04:52:01.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.354 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:01.354 -07 000000626 INF: FPGA: Recv ZSGSRD 36584
17-03-18 04:52:01.364 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:01.364 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:01.364 -07 000000467 INF: FPGA: Recv ZPIEZORD 32667
17-03-18 04:52:01.374 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:01.374 -07 000000480 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.7 V.
17-03-18 04:52:01.374 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36581 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36581 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36574 (-174.4 uncal um), Max = 36585 (-174.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:52:01.374 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36581, posNoise = 4, negNoise = 7
17-03-18 04:52:01.374 -07 000000480 INF: Z Motor: After move to -0.175312, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:01.374 -07 000000480 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:52:01.374 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:01.414 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:52:01.414 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:01.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:01.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:01.414 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:01.414 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:01.414 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:01.414 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:01.414 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:52:01.414 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:01.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:01.424 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:01.424 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:52:01.424 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:52:01.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:01.474 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:01.714 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:01.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:01.774 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:01.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:01.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:01.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:01.814 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:01.814 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:01.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:52:01.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:52:01.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:01.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:01.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:52:01.914 -07 000000447 INF: Autofocus start
17-03-18 04:52:01.914 -07 000000447 INF: MeasureProfile start
17-03-18 04:52:01.914 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:01.914 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:01.924 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:01.924 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:01.924 -07 000000447 INF: MeasureProfile done
17-03-18 04:52:01.924 -07 000000447 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:52:01.924 -07 000000447 INF: Autofocus finished
17-03-18 04:52:02.124 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:02.124 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:02.124 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175327456368892. ----------
17-03-18 04:52:02.134 -07 000000610 INF: Cycle	130	Tile	9	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:02.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36812, sync = True, waitForSettling = True)
17-03-18 04:52:02.134 -07 000000610 INF: Z Motor: Moving to -0.168515 mm, started at -0.175327 mm, distance = 6.81 um
17-03-18 04:52:02.134 -07 000000610 INF: FPGA: Xmit ZDACW 36812\n [Z Motor]
17-03-18 04:52:02.134 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:52:02.144 -07 000000610 INF: FPGA: 'ZDACW 36812' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:02.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:02.144 -07 000000502 INF: FPGA: Recv ZDACR 36812
17-03-18 04:52:02.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:02.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.304 -07 000000447 INF: FPGA: Recv ZSGSRD 35519
17-03-18 04:52:02.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:52:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.324 -07 000000606 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:52:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.344 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.003063,
17-03-18 04:52:02.344 -07 000000502 INF: FPGA: Recv ZSGSRD 35530
17-03-18 04:52:02.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:52:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.374 -07 000000479 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:52:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.404 -07 000000474 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:52:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:02.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:52:02.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.424 -07 000000382 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:52:02.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.434 -07 000000467 INF: FPGA: Recv ZSGSRD 35516
17-03-18 04:52:02.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:02.444 -07 000000501 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:52:02.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:02.454 -07 000000626 INF: FPGA: Recv ZPIEZORD 31251
17-03-18 04:52:02.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:02.464 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.4 V.
17-03-18 04:52:02.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35521 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35521 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35516 (-167.6 uncal um), Max = 35530 (-167.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:52:02.464 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35521, posNoise = 9, negNoise = 5
17-03-18 04:52:02.464 -07 000000610 INF: Z Motor: After move to -0.168515, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:02.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-18 04:52:02.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:02.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:02.464 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:02.464 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:02.464 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:02.464 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:02.464 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:02.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:02.464 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:52:02.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:02.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:02.464 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:02.474 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:02.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:02.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:02.474 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:02.484 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:52:02.484 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:02.484 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:02.484 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:02.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36988 150\n [Camera]
17-03-18 04:52:02.684 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:03.114 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:03.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:03.114 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:03.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:03.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:03.114 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:03.114 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:03.114 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:03.114 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:03.114 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:03.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36988 813
17-03-18 04:52:03.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:03.514 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:52:03.514 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:52:03.514 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:03.514 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:52:03.514 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:52:03.514 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:03.514 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:03.514 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:52:03.514 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:52:03.524 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:52:03.654 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:03.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:03.664 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:03.664 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:03.664 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:52:03.664 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:03.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:03.664 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:03.664 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:03.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:52:03.854 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:03.854 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:03.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36988 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-18 04:52:03.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:03.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168517791498626. ------
17-03-18 04:52:03.854 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:03.854 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17531 mm
17-03-18 04:52:03.854 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:03.864 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:03.864 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:03.864 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:52:03.864 -07 000000467 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:52:03.864 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:03.864 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38298, sync = True, waitForSettling = False)
17-03-18 04:52:03.864 -07 000000502 INF: Z Motor: Moving to -0.175317 mm, started at -0.168518 mm, distance = -6.80 um
17-03-18 04:52:03.874 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:03.874 -07 000000625 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:52:03.884 -07 000000502 INF: FPGA: Xmit ZDACW 38298\n [Z Motor]
17-03-18 04:52:03.884 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:52:03.884 -07 000000467 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:03.884 -07 000000467 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:03.884 -07 000000467 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:52:03.884 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:52:03.894 -07 000000502 INF: FPGA: 'ZDACW 38298' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:52:03.894 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:03.894 -07 000000581 INF: FPGA: Recv ZDACR 38298
17-03-18 04:52:03.904 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:03.904 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:03.904 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:52:04.064 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:52:04.064 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:52:04.064 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:04.064 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:04.064 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 04:52:04.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:52:04.064 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:52:04.064 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:04.074 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:04.074 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:52:04.074 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:52:04.074 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:52:04.274 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:52:04.274 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:52:04.324 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:04.334 -07 000000382 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:52:04.334 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:52:04.334 -07 000000467 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:04.334 -07 000000467 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 04:52:04.334 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 04:52:05.284 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:05.284 -07 000000474 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:52:05.294 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:05.294 -07 000000467 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:05.324 -07 000000467 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:05.324 -07 000000467 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:52:05.324 -07 000000467 INF: Y Motor: Moved to 67.3711 after 1458 ms (table move)
17-03-18 04:52:05.324 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175317 mm (DAC = 38298)
17-03-18 04:52:05.324 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.324 -07 000000625 INF: FPGA: Recv ZSGSRD 36592
17-03-18 04:52:05.334 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:05.334 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.334 -07 000000512 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:52:05.344 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.344 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.344 -07 000000461 INF: FPGA: Recv ZSGSRD 36585
17-03-18 04:52:05.354 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.354 -07 000000467 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:52:05.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.364 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.364 -07 000000608 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:52:05.374 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.374 -07 000000625 INF: FPGA: Recv ZSGSRD 36583
17-03-18 04:52:05.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.384 -07 000000569 INF: FPGA: Recv ZSGSRD 36582
17-03-18 04:52:05.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.394 -07 000000382 INF: FPGA: Recv ZSGSRD 36581
17-03-18 04:52:05.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.404 -07 000000424 INF: FPGA: Recv ZSGSRD 36581
17-03-18 04:52:05.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:05.414 -07 000000455 INF: FPGA: Recv ZSGSRD 36586
17-03-18 04:52:05.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.424 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:05.424 -07 000000474 INF: FPGA: Recv ZPIEZORD 32655
17-03-18 04:52:05.434 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:05.434 -07 000000618 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.7 V.
17-03-18 04:52:05.434 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36582 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36582 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36576 (-174.4 uncal um), Max = 36592 (-174.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:05.434 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36582, posNoise = 10, negNoise = 6
17-03-18 04:52:05.434 -07 000000618 INF: Z Motor: After move to -0.175317, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:05.434 -07 000000618 INF: Z Motor: Settle wait time = 1462 ms, measure time = 106 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:52:05.434 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:05.484 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:52:05.484 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:05.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:05.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:05.484 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:05.484 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:05.484 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:05.484 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:05.484 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:05.484 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:05.494 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:05.494 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:05.504 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:52:05.504 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:52:05.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:05.554 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:05.844 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:05.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:05.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:05.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 04:52:05.884 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:05.884 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:05.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:52:05.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:52:05.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:05.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:52:05.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:52:05.994 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:05.994 -07 000000480 INF: Autofocus start
17-03-18 04:52:05.994 -07 000000480 INF: MeasureProfile start
17-03-18 04:52:05.994 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:06.004 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:06.004 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:06.004 -07 000000480 INF: MeasureProfile done
17-03-18 04:52:06.004 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:52:06.004 -07 000000480 INF: Autofocus finished
17-03-18 04:52:06.204 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:06.204 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:06.214 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175333880581034. ----------
17-03-18 04:52:06.224 -07 000000610 INF: Cycle	130	Tile	10	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:06.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36795, sync = True, waitForSettling = True)
17-03-18 04:52:06.224 -07 000000610 INF: Z Motor: Moving to -0.168437 mm, started at -0.175334 mm, distance = 6.90 um
17-03-18 04:52:06.224 -07 000000610 INF: FPGA: Xmit ZDACW 36795\n [Z Motor]
17-03-18 04:52:06.224 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:52:06.234 -07 000000610 INF: FPGA: 'ZDACW 36795' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:52:06.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:06.234 -07 000000579 INF: FPGA: Recv ZDACR 36795
17-03-18 04:52:06.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.394 -07 000000501 INF: FPGA: Recv ZSGSRD 35508
17-03-18 04:52:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.404 -07 000000625 INF: FPGA: Recv ZSGSRD 35504
17-03-18 04:52:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.414 -07 000000455 INF: FPGA: Recv ZSGSRD 35515
17-03-18 04:52:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.424 -07 000000382 INF: FPGA: Recv ZSGSRD 35509
17-03-18 04:52:06.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35509
17-03-18 04:52:06.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35512
17-03-18 04:52:06.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35509
17-03-18 04:52:06.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35514
17-03-18 04:52:06.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.474 -07 000000608 INF: FPGA: Recv ZSGSRD 35506
17-03-18 04:52:06.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:06.484 -07 000000579 INF: FPGA: Recv ZSGSRD 35513
17-03-18 04:52:06.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:06.494 -07 000000479 INF: FPGA: Recv ZPIEZORD 31238
17-03-18 04:52:06.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:06.504 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.4 V.
17-03-18 04:52:06.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35510 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35509 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35504 (-167.5 uncal um), Max = 35515 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:06.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35510, posNoise = 5, negNoise = 6
17-03-18 04:52:06.504 -07 000000610 INF: Z Motor: After move to -0.168437, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:06.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:52:06.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:06.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:06.504 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:06.504 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:06.504 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:06.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:06.504 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:06.504 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:06.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:06.504 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:06.504 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:06.504 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:06.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:06.514 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:06.514 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:06.514 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:06.524 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:52:06.524 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:06.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:06.524 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:52:06.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36971 150\n [Camera]
17-03-18 04:52:06.714 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:06.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:06.724 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:07.154 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:07.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:07.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:07.154 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:07.154 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) start.
17-03-18 04:52:07.154 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:07.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:07.154 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:07.154 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:07.154 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:52:07.344 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36971 813
17-03-18 04:52:07.494 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:07.524 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:52:07.524 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:52:07.524 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:07.534 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:07.534 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:52:07.534 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:52:07.534 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:07.534 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:07.534 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:52:07.534 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:52:07.704 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:07.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:07.704 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:07.704 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:07.704 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:52:07.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:07.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:07.704 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:07.704 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:07.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:52:07.724 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.02213,
17-03-18 04:52:07.894 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:07.894 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:07.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36971 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:52:07.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:07.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168447125165067. ------
17-03-18 04:52:08.024 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17471 mm
17-03-18 04:52:08.024 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:08.024 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:08.024 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38165, sync = True, waitForSettling = False)
17-03-18 04:52:08.024 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:52:08.024 -07 000000424 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:52:08.024 -07 000000581 INF: Z Motor: Moving to -0.174708 mm, started at -0.168447 mm, distance = -6.26 um
17-03-18 04:52:08.024 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:08.034 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:08.034 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:08.034 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:52:08.044 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:52:08.044 -07 000000424 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:08.044 -07 000000424 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:08.044 -07 000000424 INF: Y Motor: Moving 1346 steps-25
17-03-18 04:52:08.044 -07 000000581 INF: FPGA: Xmit ZDACW 38165\n [Z Motor]
17-03-18 04:52:08.044 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:52:08.054 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:08.054 -07 000000581 INF: FPGA: 'ZDACW 38165' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:52:08.064 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:08.074 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:08.074 -07 000000455 INF: FPGA: Recv ZDACR 38165
17-03-18 04:52:08.084 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:08.084 -07 000000581 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:52:08.104 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:52:08.104 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:52:08.104 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:08.104 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:52:08.104 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:52:08.104 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:08.114 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:08.114 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:52:08.114 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:52:08.124 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:52:08.254 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:08.254 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:52:08.434 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:52:08.434 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:52:08.484 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:08.494 -07 000000447 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:52:08.494 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:08.494 -07 000000424 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:08.494 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:52:08.494 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 04:52:09.444 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:09.444 -07 000000581 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:52:09.454 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:09.454 -07 000000424 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:09.484 -07 000000424 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:09.484 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:09.484 -07 000000424 INF: Y Motor: Moved to 68.2036 after 1456 ms (table move)
17-03-18 04:52:09.484 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174708 mm (DAC = 38165)
17-03-18 04:52:09.484 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.484 -07 000000608 INF: FPGA: Recv ZSGSRD 36495
17-03-18 04:52:09.494 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:52:09.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.494 -07 000000581 INF: FPGA: Recv ZSGSRD 36484
17-03-18 04:52:09.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.504 -07 000000606 INF: FPGA: Recv ZSGSRD 36484
17-03-18 04:52:09.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.514 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.514 -07 000000502 INF: FPGA: Recv ZSGSRD 36479
17-03-18 04:52:09.524 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.524 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.524 -07 000000579 INF: FPGA: Recv ZSGSRD 36483
17-03-18 04:52:09.534 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.534 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.534 -07 000000512 INF: FPGA: Recv ZSGSRD 36486
17-03-18 04:52:09.544 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.544 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.544 -07 000000608 INF: FPGA: Recv ZSGSRD 36492
17-03-18 04:52:09.554 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.554 -07 000000479 INF: FPGA: Recv ZSGSRD 36488
17-03-18 04:52:09.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.564 -07 000000618 INF: FPGA: Recv ZSGSRD 36491
17-03-18 04:52:09.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:09.574 -07 000000579 INF: FPGA: Recv ZSGSRD 36487
17-03-18 04:52:09.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.584 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:09.584 -07 000000455 INF: FPGA: Recv ZPIEZORD 32492
17-03-18 04:52:09.594 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:09.594 -07 000000461 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.8 V.
17-03-18 04:52:09.594 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36487 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36486 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36479 (-173.8 uncal um), Max = 36495 (-173.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:52:09.594 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36487, posNoise = 8, negNoise = 8
17-03-18 04:52:09.594 -07 000000461 INF: Z Motor: After move to -0.174708, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:09.594 -07 000000461 INF: Z Motor: Settle wait time = 1459 ms, measure time = 106 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:52:09.594 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:09.644 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 04:52:09.644 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:09.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:09.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:09.644 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:09.644 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:09.644 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:09.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:09.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:09.644 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:09.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:09.654 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:09.664 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:52:09.664 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:52:09.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:09.714 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:10.014 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:10.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:10.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:10.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:10.054 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:10.054 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:10.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:52:10.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:52:10.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:10.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:10.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:52:10.154 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:10.154 -07 000000447 INF: Autofocus start
17-03-18 04:52:10.154 -07 000000447 INF: MeasureProfile start
17-03-18 04:52:10.154 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:10.164 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:10.164 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:10.164 -07 000000447 INF: MeasureProfile done
17-03-18 04:52:10.164 -07 000000447 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:52:10.164 -07 000000447 INF: Autofocus finished
17-03-18 04:52:10.364 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:10.364 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:10.364 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.174723580427567. ----------
17-03-18 04:52:10.364 -07 000000610 INF: Cycle	130	Tile	11	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:10.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36698, sync = True, waitForSettling = True)
17-03-18 04:52:10.374 -07 000000610 INF: Z Motor: Moving to -0.167993 mm, started at -0.174724 mm, distance = 6.73 um
17-03-18 04:52:10.374 -07 000000610 INF: FPGA: Xmit ZDACW 36698\n [Z Motor]
17-03-18 04:52:10.374 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:52:10.384 -07 000000610 INF: FPGA: 'ZDACW 36698' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:10.384 -07 000000501 INF: FPGA: Recv ZDACR 36698
17-03-18 04:52:10.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:10.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.544 -07 000000502 INF: FPGA: Recv ZSGSRD 35441
17-03-18 04:52:10.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:10.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.554 -07 000000455 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:52:10.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.564 -07 000000474 INF: FPGA: Recv ZSGSRD 35437
17-03-18 04:52:10.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.574 -07 000000581 INF: FPGA: Recv ZSGSRD 35444
17-03-18 04:52:10.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.584 -07 000000625 INF: FPGA: Recv ZSGSRD 35436
17-03-18 04:52:10.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.594 -07 000000569 INF: FPGA: Recv ZSGSRD 35443
17-03-18 04:52:10.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.604 -07 000000447 INF: FPGA: Recv ZSGSRD 35442
17-03-18 04:52:10.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.614 -07 000000480 INF: FPGA: Recv ZSGSRD 35437
17-03-18 04:52:10.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.624 -07 000000581 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:52:10.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:10.634 -07 000000618 INF: FPGA: Recv ZSGSRD 35436
17-03-18 04:52:10.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:10.644 -07 000000502 INF: FPGA: Recv ZPIEZORD 31132
17-03-18 04:52:10.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:10.654 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.5 V.
17-03-18 04:52:10.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35440 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35440 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35436 (-167.1 uncal um), Max = 35444 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:52:10.654 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35440, posNoise = 4, negNoise = 4
17-03-18 04:52:10.654 -07 000000610 INF: Z Motor: After move to -0.167993, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:10.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:52:10.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:10.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:10.654 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:10.654 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:10.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:10.654 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:10.654 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:10.654 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:10.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:10.654 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:10.654 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:10.654 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:10.654 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:10.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:52:10.664 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:10.664 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:10.674 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:10.674 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:52:10.674 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:52:10.674 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:52:10.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36875 150\n [Camera]
17-03-18 04:52:10.874 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:11.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:11.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:11.304 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:11.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:11.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:11.304 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:11.304 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:11.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:11.314 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:11.314 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:11.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36875 813
17-03-18 04:52:11.644 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:11.684 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:52:11.684 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:52:11.684 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:11.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:52:11.694 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:52:11.694 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:11.694 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:11.694 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:52:11.694 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:11.704 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:52:11.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:11.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:11.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:11.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:11.854 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:11.854 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:11.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:11.854 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:11.854 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:11.854 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:52:11.864 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:11.864 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:52:12.044 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:52:12.044 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:12.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36875 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:52:12.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:12.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.167997430315143. ------
17-03-18 04:52:12.044 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:12.044 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17454 mm
17-03-18 04:52:12.044 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:12.054 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:12.054 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:52:12.054 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38128, sync = True, waitForSettling = False)
17-03-18 04:52:12.054 -07 000000581 INF: Z Motor: Moving to -0.174539 mm, started at -0.167997 mm, distance = -6.54 um
17-03-18 04:52:12.054 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:52:12.054 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 04:52:12.054 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:12.064 -07 000000581 INF: FPGA: Xmit ZDACW 38128\n [Z Motor]
17-03-18 04:52:12.064 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:52:12.074 -07 000000581 INF: FPGA: 'ZDACW 38128' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:52:12.074 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:12.074 -07 000000467 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:52:12.084 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:52:12.084 -07 000000424 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:12.084 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:12.084 -07 000000502 INF: FPGA: Recv ZDACR 38128
17-03-18 04:52:12.084 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:12.204 -07 000000424 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:52:12.204 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:12.204 -07 000000581 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 04:52:12.204 -07 000000581 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-18 04:52:12.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:52:12.244 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:52:12.244 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:12.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:52:12.244 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:52:12.244 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:12.244 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:12.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:52:12.244 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:52:12.254 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:52:12.254 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:12.254 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 04:52:12.584 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:52:12.584 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-18 04:52:12.634 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:12.634 -07 000000608 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:52:12.644 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:12.644 -07 000000424 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:12.644 -07 000000424 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:52:12.644 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 04:52:13.084 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.003063,
17-03-18 04:52:13.594 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:13.594 -07 000000382 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:52:13.604 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:13.604 -07 000000424 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:13.634 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:13.634 -07 000000424 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:13.634 -07 000000424 INF: Y Motor: Moved to 69.0259 after 1578 ms (table move)
17-03-18 04:52:13.634 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174539 mm (DAC = 38128)
17-03-18 04:52:13.634 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.634 -07 000000455 INF: FPGA: Recv ZSGSRD 36463
17-03-18 04:52:13.644 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:13.644 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.644 -07 000000512 INF: FPGA: Recv ZSGSRD 36461
17-03-18 04:52:13.654 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.654 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.654 -07 000000501 INF: FPGA: Recv ZSGSRD 36454
17-03-18 04:52:13.664 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.664 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.664 -07 000000461 INF: FPGA: Recv ZSGSRD 36459
17-03-18 04:52:13.674 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.674 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.674 -07 000000579 INF: FPGA: Recv ZSGSRD 36454
17-03-18 04:52:13.684 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.684 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.684 -07 000000455 INF: FPGA: Recv ZSGSRD 36453
17-03-18 04:52:13.694 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.694 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.694 -07 000000606 INF: FPGA: Recv ZSGSRD 36464
17-03-18 04:52:13.704 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.704 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.704 -07 000000501 INF: FPGA: Recv ZSGSRD 36458
17-03-18 04:52:13.714 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.714 -07 000000461 INF: FPGA: Recv ZSGSRD 36463
17-03-18 04:52:13.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:13.724 -07 000000618 INF: FPGA: Recv ZSGSRD 36464
17-03-18 04:52:13.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.734 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:13.734 -07 000000608 INF: FPGA: Recv ZPIEZORD 32513
17-03-18 04:52:13.744 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:13.744 -07 000000626 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.7 V.
17-03-18 04:52:13.744 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36459 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36460 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36453 (-173.6 uncal um), Max = 36464 (-173.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:13.744 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36459, posNoise = 5, negNoise = 6
17-03-18 04:52:13.744 -07 000000626 INF: Z Motor: After move to -0.174539, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:13.744 -07 000000626 INF: Z Motor: Settle wait time = 1583 ms, measure time = 106 ms (allowed 150 ms), total time = 1689 ms
17-03-18 04:52:13.744 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:13.794 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 04:52:13.794 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:13.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:13.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:13.794 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:13.794 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:13.794 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:13.794 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:13.794 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:13.794 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:13.804 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:13.804 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:13.804 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:52:13.804 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:52:13.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:13.854 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:14.154 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:14.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:14.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:14.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:14.194 -07 000000618 INF: FPGA: Recv @CAMSNAP 383
17-03-18 04:52:14.194 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:14.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 388 ms overall
17-03-18 04:52:14.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:52:14.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:14.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:14.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:52:14.304 -07 000000455 INF: Autofocus start
17-03-18 04:52:14.304 -07 000000455 INF: MeasureProfile start
17-03-18 04:52:14.304 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:14.304 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:14.314 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:14.314 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:14.314 -07 000000455 INF: MeasureProfile done
17-03-18 04:52:14.314 -07 000000455 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:52:14.314 -07 000000455 INF: Autofocus finished
17-03-18 04:52:14.514 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:14.514 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:14.514 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174543702487598. ----------
17-03-18 04:52:14.514 -07 000000610 INF: Cycle	130	Tile	12	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:14.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36661, sync = True, waitForSettling = True)
17-03-18 04:52:14.524 -07 000000610 INF: Z Motor: Moving to -0.167823 mm, started at -0.174544 mm, distance = 6.72 um
17-03-18 04:52:14.524 -07 000000610 INF: FPGA: Xmit ZDACW 36661\n [Z Motor]
17-03-18 04:52:14.524 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:52:14.534 -07 000000610 INF: FPGA: 'ZDACW 36661' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:14.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:14.534 -07 000000447 INF: FPGA: Recv ZDACR 36661
17-03-18 04:52:14.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:14.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.694 -07 000000569 INF: FPGA: Recv ZSGSRD 35415
17-03-18 04:52:14.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:14.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35414
17-03-18 04:52:14.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.714 -07 000000424 INF: FPGA: Recv ZSGSRD 35412
17-03-18 04:52:14.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.724 -07 000000606 INF: FPGA: Recv ZSGSRD 35407
17-03-18 04:52:14.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35413
17-03-18 04:52:14.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.744 -07 000000382 INF: FPGA: Recv ZSGSRD 35422
17-03-18 04:52:14.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.754 -07 000000480 INF: FPGA: Recv ZSGSRD 35412
17-03-18 04:52:14.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.764 -07 000000424 INF: FPGA: Recv ZSGSRD 35420
17-03-18 04:52:14.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.774 -07 000000512 INF: FPGA: Recv ZSGSRD 35414
17-03-18 04:52:14.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:14.784 -07 000000608 INF: FPGA: Recv ZSGSRD 35412
17-03-18 04:52:14.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:14.794 -07 000000569 INF: FPGA: Recv ZPIEZORD 31113
17-03-18 04:52:14.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:14.804 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.5 V.
17-03-18 04:52:14.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35414 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35414 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35407 (-166.9 uncal um), Max = 35422 (-167.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:52:14.804 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35414, posNoise = 8, negNoise = 7
17-03-18 04:52:14.804 -07 000000610 INF: Z Motor: After move to -0.167823, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:14.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:52:14.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:14.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:14.804 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:14.804 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:14.804 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:14.804 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:14.804 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:14.804 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:14.814 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:52:14.814 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:14.814 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:52:14.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:14.814 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:14.814 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:14.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:14.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:14.824 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:52:14.824 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:14.824 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:52:14.824 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:52:14.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36837 150\n [Camera]
17-03-18 04:52:15.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:15.454 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:15.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:15.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:15.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:15.454 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:15.454 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:15.464 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:15.464 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:15.464 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:15.464 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:15.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36837 813
17-03-18 04:52:15.794 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:15.854 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:52:15.854 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:52:15.854 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:15.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:52:15.854 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:52:15.854 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:15.854 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:15.854 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:15.854 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:52:15.864 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:52:16.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:16.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:16.004 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:16.004 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:16.004 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:52:16.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:16.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:16.004 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:16.004 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:16.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:52:16.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:16.194 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:16.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36837 150' command took 2 ms to send, 1365 ms to get response, and 1369 ms overall
17-03-18 04:52:16.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:16.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167830400799457. ------
17-03-18 04:52:16.204 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:16.204 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17420 mm
17-03-18 04:52:16.204 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:16.204 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:52:16.204 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:52:16.204 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:16.204 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38054, sync = True, waitForSettling = False)
17-03-18 04:52:16.204 -07 000000606 INF: Z Motor: Moving to -0.174200 mm, started at -0.167830 mm, distance = -6.37 um
17-03-18 04:52:16.214 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:16.214 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:16.224 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:16.224 -07 000000382 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:52:16.234 -07 000000606 INF: FPGA: Xmit ZDACW 38054\n [Z Motor]
17-03-18 04:52:16.234 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:52:16.234 -07 000000424 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:16.234 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:16.234 -07 000000424 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:52:16.234 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:52:16.244 -07 000000606 INF: FPGA: 'ZDACW 38054' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:52:16.244 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:16.244 -07 000000467 INF: FPGA: Recv ZDACR 38054
17-03-18 04:52:16.254 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:16.254 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:16.254 -07 000000606 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:52:16.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:52:16.404 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:52:16.404 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:16.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:52:16.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:52:16.404 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:16.414 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:16.414 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:52:16.414 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:52:16.414 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:16.414 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:16.424 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:52:16.624 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:52:16.624 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:52:16.674 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:16.684 -07 000000501 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:52:16.684 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:16.684 -07 000000424 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:16.684 -07 000000424 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:52:16.684 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 04:52:16.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:16.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:17.634 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:17.634 -07 000000608 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:52:17.644 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:17.644 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:17.674 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:17.674 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:52:17.674 -07 000000424 INF: Y Motor: Moved to 69.8623 after 1467 ms (table move)
17-03-18 04:52:17.674 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174200 mm (DAC = 38054)
17-03-18 04:52:17.674 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.674 -07 000000502 INF: FPGA: Recv ZSGSRD 36410
17-03-18 04:52:17.684 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:52:17.684 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36406
17-03-18 04:52:17.694 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.694 -07 000000606 INF: FPGA: Recv ZSGSRD 36412
17-03-18 04:52:17.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.704 -07 000000501 INF: FPGA: Recv ZSGSRD 36407
17-03-18 04:52:17.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.714 -07 000000479 INF: FPGA: Recv ZSGSRD 36405
17-03-18 04:52:17.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.724 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.724 -07 000000502 INF: FPGA: Recv ZSGSRD 36405
17-03-18 04:52:17.734 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.734 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.734 -07 000000581 INF: FPGA: Recv ZSGSRD 36403
17-03-18 04:52:17.744 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.744 -07 000000502 INF: FPGA: Recv ZSGSRD 36409
17-03-18 04:52:17.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.754 -07 000000501 INF: FPGA: Recv ZSGSRD 36404
17-03-18 04:52:17.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.764 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:17.764 -07 000000625 INF: FPGA: Recv ZSGSRD 36407
17-03-18 04:52:17.774 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.774 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:17.774 -07 000000447 INF: FPGA: Recv ZPIEZORD 32465
17-03-18 04:52:17.784 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:17.784 -07 000000461 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.7 V.
17-03-18 04:52:17.784 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36407 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36406 (-173.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36403 (-173.3 uncal um), Max = 36412 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:52:17.784 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36407, posNoise = 5, negNoise = 4
17-03-18 04:52:17.784 -07 000000461 INF: Z Motor: After move to -0.174200, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:17.784 -07 000000461 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:52:17.784 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:17.834 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 04:52:17.834 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:17.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:17.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:17.834 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:17.834 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:17.834 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:17.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:17.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:52:17.834 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:17.844 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:17.844 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:17.844 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:52:17.844 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:52:17.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:17.894 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:18.194 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:18.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:18.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:18.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 04:52:18.234 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:18.234 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:18.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 04:52:18.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:52:18.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:18.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:52:18.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:52:18.334 -07 000000625 INF: Autofocus start
17-03-18 04:52:18.334 -07 000000625 INF: MeasureProfile start
17-03-18 04:52:18.334 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:18.334 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:18.344 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:18.344 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:18.344 -07 000000625 INF: MeasureProfile done
17-03-18 04:52:18.344 -07 000000625 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:52:18.344 -07 000000625 INF: Autofocus finished
17-03-18 04:52:18.454 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.004458,
17-03-18 04:52:18.544 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:18.544 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:18.544 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174209643456226. ----------
17-03-18 04:52:18.544 -07 000000610 INF: Cycle	130	Tile	13	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:18.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36587, sync = True, waitForSettling = True)
17-03-18 04:52:18.554 -07 000000610 INF: Z Motor: Moving to -0.167485 mm, started at -0.174210 mm, distance = 6.73 um
17-03-18 04:52:18.554 -07 000000610 INF: FPGA: Xmit ZDACW 36587\n [Z Motor]
17-03-18 04:52:18.554 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:52:18.564 -07 000000610 INF: FPGA: 'ZDACW 36587' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:18.564 -07 000000461 INF: FPGA: Recv ZDACR 36587
17-03-18 04:52:18.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:18.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.724 -07 000000424 INF: FPGA: Recv ZSGSRD 35357
17-03-18 04:52:18.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:18.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.734 -07 000000512 INF: FPGA: Recv ZSGSRD 35365
17-03-18 04:52:18.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.744 -07 000000569 INF: FPGA: Recv ZSGSRD 35366
17-03-18 04:52:18.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.754 -07 000000447 INF: FPGA: Recv ZSGSRD 35355
17-03-18 04:52:18.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.764 -07 000000479 INF: FPGA: Recv ZSGSRD 35368
17-03-18 04:52:18.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.774 -07 000000606 INF: FPGA: Recv ZSGSRD 35359
17-03-18 04:52:18.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.784 -07 000000502 INF: FPGA: Recv ZSGSRD 35358
17-03-18 04:52:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.794 -07 000000569 INF: FPGA: Recv ZSGSRD 35363
17-03-18 04:52:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.804 -07 000000447 INF: FPGA: Recv ZSGSRD 35357
17-03-18 04:52:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:18.814 -07 000000382 INF: FPGA: Recv ZSGSRD 35361
17-03-18 04:52:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:18.824 -07 000000579 INF: FPGA: Recv ZPIEZORD 31062
17-03-18 04:52:18.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:18.834 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.5 V.
17-03-18 04:52:18.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35361 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35355 (-166.6 uncal um), Max = 35368 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:18.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35361, posNoise = 7, negNoise = 6
17-03-18 04:52:18.834 -07 000000610 INF: Z Motor: After move to -0.167485, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:18.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:52:18.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:18.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:18.834 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:18.834 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:18.834 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:18.834 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:18.834 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:18.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:18.834 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:18.834 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:18.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:18.834 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:18.844 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:18.844 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:18.844 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:52:18.844 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:18.854 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:18.854 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:52:18.854 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:52:18.854 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:52:18.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36764 150\n [Camera]
17-03-18 04:52:19.054 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:19.484 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:19.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:19.484 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:19.484 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:19.484 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) start.
17-03-18 04:52:19.484 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:19.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:19.484 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:19.484 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:19.484 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:52:19.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36764 813
17-03-18 04:52:19.824 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:19.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:52:19.884 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:52:19.884 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:19.884 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:52:19.884 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:52:19.884 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:19.884 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:19.884 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:52:19.884 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:19.894 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:52:20.024 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:20.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:20.034 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:20.034 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:20.034 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:52:20.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:20.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:20.034 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:20.034 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:20.034 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:52:20.224 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:52:20.224 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:20.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36764 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-18 04:52:20.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:20.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167489917555944. ------
17-03-18 04:52:20.224 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:20.224 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17397 mm
17-03-18 04:52:20.224 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:20.224 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:52:20.224 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38005, sync = True, waitForSettling = False)
17-03-18 04:52:20.224 -07 000000502 INF: Z Motor: Moving to -0.173976 mm, started at -0.167490 mm, distance = -6.49 um
17-03-18 04:52:20.224 -07 000000569 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 04:52:20.224 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:20.234 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:20.234 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:20.234 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:52:20.244 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:20.244 -07 000000569 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:20.244 -07 000000569 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:20.244 -07 000000569 INF: Y Motor: Moving 1344 steps-22
17-03-18 04:52:20.244 -07 000000502 INF: FPGA: Xmit ZDACW 38005\n [Z Motor]
17-03-18 04:52:20.244 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:52:20.254 -07 000000502 INF: FPGA: 'ZDACW 38005' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:52:20.254 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:20.264 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:20.274 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:20.274 -07 000000461 INF: FPGA: Recv ZDACR 38005
17-03-18 04:52:20.284 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:20.284 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:52:20.434 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:52:20.434 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:52:20.434 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:20.434 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:52:20.434 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:52:20.434 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:20.444 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:20.444 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:52:20.444 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:52:20.454 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:52:20.454 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:20.454 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:52:20.634 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:52:20.634 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 04:52:20.694 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:20.694 -07 000000480 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:52:20.704 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:20.704 -07 000000569 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:20.704 -07 000000569 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:52:20.704 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.106 mm/sec
17-03-18 04:52:21.654 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:21.654 -07 000000455 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:52:21.664 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:21.664 -07 000000569 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:21.694 -07 000000569 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:21.694 -07 000000569 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:21.694 -07 000000569 INF: Y Motor: Moved to 70.6870 after 1462 ms (table move)
17-03-18 04:52:21.694 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173976 mm (DAC = 38005)
17-03-18 04:52:21.694 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.704 -07 000000474 INF: FPGA: Recv ZSGSRD 36369
17-03-18 04:52:21.704 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:52:21.704 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.704 -07 000000455 INF: FPGA: Recv ZSGSRD 36376
17-03-18 04:52:21.714 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:21.714 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.714 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:21.714 -07 000000479 INF: FPGA: Recv ZSGSRD 36368
17-03-18 04:52:21.724 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.724 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.724 -07 000000501 INF: FPGA: Recv ZSGSRD 36369
17-03-18 04:52:21.734 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.734 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.734 -07 000000461 INF: FPGA: Recv ZSGSRD 36374
17-03-18 04:52:21.744 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:21.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.744 -07 000000447 INF: FPGA: Recv ZSGSRD 36371
17-03-18 04:52:21.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.754 -07 000000480 INF: FPGA: Recv ZSGSRD 36375
17-03-18 04:52:21.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.764 -07 000000625 INF: FPGA: Recv ZSGSRD 36371
17-03-18 04:52:21.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.774 -07 000000608 INF: FPGA: Recv ZSGSRD 36374
17-03-18 04:52:21.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:21.784 -07 000000455 INF: FPGA: Recv ZSGSRD 36368
17-03-18 04:52:21.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.794 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:21.794 -07 000000626 INF: FPGA: Recv ZPIEZORD 32414
17-03-18 04:52:21.804 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:21.804 -07 000000382 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.7 V.
17-03-18 04:52:21.804 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36372 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36371 (-173.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36368 (-173.1 uncal um), Max = 36376 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:52:21.804 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36372, posNoise = 4, negNoise = 4
17-03-18 04:52:21.804 -07 000000382 INF: Z Motor: After move to -0.173976, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:21.804 -07 000000382 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:52:21.804 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:21.854 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:52:21.854 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:21.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:21.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:21.854 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:21.854 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:21.854 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:21.854 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:21.854 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:52:21.854 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:21.864 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:21.864 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:21.874 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:52:21.874 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:52:21.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:21.914 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:22.214 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:22.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:22.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:22.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:22.254 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:22.254 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:22.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:52:22.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:52:22.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:22.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:22.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:52:22.354 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:22.354 -07 000000625 INF: Autofocus start
17-03-18 04:52:22.354 -07 000000625 INF: MeasureProfile start
17-03-18 04:52:22.354 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:22.364 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:22.364 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:22.364 -07 000000625 INF: MeasureProfile done
17-03-18 04:52:22.364 -07 000000625 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:52:22.364 -07 000000625 INF: Autofocus finished
17-03-18 04:52:22.564 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:22.564 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:22.564 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.173984796031264. ----------
17-03-18 04:52:22.564 -07 000000610 INF: Cycle	130	Tile	14	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:22.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36484, sync = True, waitForSettling = True)
17-03-18 04:52:22.574 -07 000000610 INF: Z Motor: Moving to -0.167013 mm, started at -0.173985 mm, distance = 6.97 um
17-03-18 04:52:22.574 -07 000000610 INF: FPGA: Xmit ZDACW 36484\n [Z Motor]
17-03-18 04:52:22.574 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:52:22.584 -07 000000610 INF: FPGA: 'ZDACW 36484' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:22.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:22.584 -07 000000501 INF: FPGA: Recv ZDACR 36484
17-03-18 04:52:22.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:22.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.744 -07 000000461 INF: FPGA: Recv ZSGSRD 35288
17-03-18 04:52:22.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.754 -07 000000479 INF: FPGA: Recv ZSGSRD 35292
17-03-18 04:52:22.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.764 -07 000000501 INF: FPGA: Recv ZSGSRD 35288
17-03-18 04:52:22.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.774 -07 000000502 INF: FPGA: Recv ZSGSRD 35288
17-03-18 04:52:22.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.784 -07 000000625 INF: FPGA: Recv ZSGSRD 35289
17-03-18 04:52:22.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.794 -07 000000382 INF: FPGA: Recv ZSGSRD 35291
17-03-18 04:52:22.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35289
17-03-18 04:52:22.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.814 -07 000000501 INF: FPGA: Recv ZSGSRD 35284
17-03-18 04:52:22.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.824 -07 000000502 INF: FPGA: Recv ZSGSRD 35290
17-03-18 04:52:22.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:22.834 -07 000000474 INF: FPGA: Recv ZSGSRD 35286
17-03-18 04:52:22.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:22.844 -07 000000608 INF: FPGA: Recv ZPIEZORD 30964
17-03-18 04:52:22.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:22.854 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 04:52:22.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35284 (-166.1 uncal um), Max = 35292 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:52:22.854 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 4, negNoise = 4
17-03-18 04:52:22.854 -07 000000610 INF: Z Motor: After move to -0.167013, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:22.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:52:22.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:22.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:22.854 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:22.854 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:22.854 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:22.854 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:22.854 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:22.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:22.854 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:52:22.854 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:22.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:22.854 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:22.864 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:22.864 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:22.864 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:22.864 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:22.874 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:52:22.874 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:52:22.874 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:52:22.874 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:52:22.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36661 150\n [Camera]
17-03-18 04:52:23.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:23.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 04:52:23.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 04:52:23.504 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:23.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 04:52:23.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 04:52:23.504 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:23.514 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:23.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:23.514 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:23.514 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:23.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36661 813
17-03-18 04:52:23.824 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.000345,
17-03-18 04:52:23.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:23.884 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 04:52:23.884 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 04:52:23.884 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:23.884 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:23.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:52:23.884 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:52:23.884 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:23.894 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:23.894 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:52:23.894 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:52:24.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:24.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:24.054 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:24.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:24.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:24.054 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:24.054 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:24.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:52:24.054 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:24.054 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:52:24.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:52:24.244 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:24.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36661 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-18 04:52:24.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:24.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68701171875, Z-Position -0.167020950069596. ------
17-03-18 04:52:24.244 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:24.244 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17372 mm
17-03-18 04:52:24.244 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:24.364 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:24.364 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 04:52:24.364 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:24.364 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:52:24.364 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37948, sync = True, waitForSettling = False)
17-03-18 04:52:24.364 -07 000000479 INF: Z Motor: Moving to -0.173715 mm, started at -0.167021 mm, distance = -6.69 um
17-03-18 04:52:24.364 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 04:52:24.374 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:24.374 -07 000000608 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:52:24.384 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:52:24.384 -07 000000501 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:24.384 -07 000000479 INF: FPGA: Xmit ZDACW 37948\n [Z Motor]
17-03-18 04:52:24.384 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:52:24.384 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:24.384 -07 000000501 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:52:24.394 -07 000000479 INF: FPGA: 'ZDACW 37948' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:52:24.394 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:24.394 -07 000000502 INF: FPGA: Recv ZDACR 37948
17-03-18 04:52:24.404 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:24.404 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:24.404 -07 000000479 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 04:52:24.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:52:24.444 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:52:24.444 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:24.454 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:52:24.454 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:52:24.454 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:24.454 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:24.454 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:52:24.454 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:52:24.454 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:52:24.564 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:24.564 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 04:52:24.774 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:52:24.774 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:52:24.824 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:24.824 -07 000000467 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:52:24.834 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:24.834 -07 000000501 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:24.834 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:52:24.834 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.152 mm/sec
17-03-18 04:52:25.784 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:25.784 -07 000000625 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:52:25.794 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:25.794 -07 000000501 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:25.824 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:25.824 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:25.824 -07 000000501 INF: Y Motor: Moved to 71.5176 after 1455 ms (table move)
17-03-18 04:52:25.824 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173715 mm (DAC = 37948)
17-03-18 04:52:25.824 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.824 -07 000000461 INF: FPGA: Recv ZSGSRD 36329
17-03-18 04:52:25.834 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:25.834 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.834 -07 000000474 INF: FPGA: Recv ZSGSRD 36326
17-03-18 04:52:25.844 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.844 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.844 -07 000000447 INF: FPGA: Recv ZSGSRD 36330
17-03-18 04:52:25.854 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.854 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.854 -07 000000382 INF: FPGA: Recv ZSGSRD 36338
17-03-18 04:52:25.864 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.864 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.864 -07 000000501 INF: FPGA: Recv ZSGSRD 36330
17-03-18 04:52:25.874 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.874 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.874 -07 000000618 INF: FPGA: Recv ZSGSRD 36331
17-03-18 04:52:25.884 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.884 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.884 -07 000000606 INF: FPGA: Recv ZSGSRD 36325
17-03-18 04:52:25.894 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.894 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.894 -07 000000608 INF: FPGA: Recv ZSGSRD 36329
17-03-18 04:52:25.904 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.904 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.904 -07 000000382 INF: FPGA: Recv ZSGSRD 36331
17-03-18 04:52:25.914 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.914 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:25.914 -07 000000479 INF: FPGA: Recv ZSGSRD 36328
17-03-18 04:52:25.924 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.924 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:25.924 -07 000000618 INF: FPGA: Recv ZPIEZORD 32398
17-03-18 04:52:25.934 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:25.934 -07 000000455 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.7 V.
17-03-18 04:52:25.934 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36330 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36330 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36325 (-172.8 uncal um), Max = 36338 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:52:25.934 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36330, posNoise = 8, negNoise = 5
17-03-18 04:52:25.934 -07 000000455 INF: Z Motor: After move to -0.173715, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:25.934 -07 000000455 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:52:25.934 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:25.984 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 04:52:25.984 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:25.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:25.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:25.984 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:25.984 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:25.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:25.984 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:25.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:25.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:25.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:25.994 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:25.994 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:52:25.994 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:52:26.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:26.044 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:26.344 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:26.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:26.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:26.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:26.384 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:26.384 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:26.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:52:26.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:52:26.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:26.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:26.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:52:26.484 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:26.484 -07 000000474 INF: Autofocus start
17-03-18 04:52:26.484 -07 000000474 INF: MeasureProfile start
17-03-18 04:52:26.484 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:26.494 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:26.494 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:26.494 -07 000000474 INF: MeasureProfile done
17-03-18 04:52:26.494 -07 000000474 INF: X=48  Z correction [um]=0.1739867
17-03-18 04:52:26.494 -07 000000474 INF: Autofocus finished
17-03-18 04:52:26.694 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:26.694 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:26.694 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173714979121311. ----------
17-03-18 04:52:26.694 -07 000000610 INF: Cycle	130	Tile	15	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:26.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36499, sync = True, waitForSettling = True)
17-03-18 04:52:26.704 -07 000000610 INF: Z Motor: Moving to -0.167082 mm, started at -0.173715 mm, distance = 6.63 um
17-03-18 04:52:26.704 -07 000000610 INF: FPGA: Xmit ZDACW 36499\n [Z Motor]
17-03-18 04:52:26.704 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:52:26.714 -07 000000610 INF: FPGA: 'ZDACW 36499' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:26.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:26.714 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:26.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:26.714 -07 000000382 INF: FPGA: Recv ZDACR 36499
17-03-18 04:52:26.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:26.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.874 -07 000000447 INF: FPGA: Recv ZSGSRD 35297
17-03-18 04:52:26.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:26.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.884 -07 000000618 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:52:26.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.894 -07 000000455 INF: FPGA: Recv ZSGSRD 35296
17-03-18 04:52:26.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.904 -07 000000424 INF: FPGA: Recv ZSGSRD 35294
17-03-18 04:52:26.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.914 -07 000000467 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:52:26.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.924 -07 000000502 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:52:26.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.934 -07 000000479 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:52:26.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.944 -07 000000382 INF: FPGA: Recv ZSGSRD 35297
17-03-18 04:52:26.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.954 -07 000000569 INF: FPGA: Recv ZSGSRD 35298
17-03-18 04:52:26.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:26.964 -07 000000467 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:52:26.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:26.974 -07 000000501 INF: FPGA: Recv ZPIEZORD 31013
17-03-18 04:52:26.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:26.984 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.4 V.
17-03-18 04:52:26.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35298 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35298 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35294 (-166.2 uncal um), Max = 35302 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:52:26.984 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35298, posNoise = 4, negNoise = 4
17-03-18 04:52:26.984 -07 000000610 INF: Z Motor: After move to -0.167082, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:26.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:52:26.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:26.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:26.984 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:26.984 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:26.984 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:26.984 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:26.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:26.984 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:26.984 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:26.984 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:26.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:26.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:26.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:26.994 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:26.994 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:26.994 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:27.004 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:27.004 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:27.004 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:52:27.004 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:52:27.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36675 150\n [Camera]
17-03-18 04:52:27.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:27.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:27.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:27.634 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:27.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:27.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:27.634 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:27.634 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:27.634 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:27.644 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:27.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:27.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36675 813
17-03-18 04:52:27.974 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:28.034 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:52:28.034 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:52:28.034 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:28.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:52:28.034 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:52:28.034 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:28.034 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:28.034 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:52:28.034 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:28.044 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:52:28.184 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:28.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:28.184 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:28.184 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:28.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:52:28.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:28.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:28.184 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:28.184 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:28.184 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:52:28.374 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:28.374 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:28.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36675 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:52:28.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:28.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.167085192191013. ------
17-03-18 04:52:28.384 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17338 mm
17-03-18 04:52:28.384 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:28.384 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:28.384 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:52:28.384 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:52:28.384 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37874, sync = True, waitForSettling = False)
17-03-18 04:52:28.384 -07 000000626 INF: Z Motor: Moving to -0.173376 mm, started at -0.167085 mm, distance = -6.29 um
17-03-18 04:52:28.384 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:28.394 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:28.394 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:28.394 -07 000000569 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:52:28.404 -07 000000626 INF: FPGA: Xmit ZDACW 37874\n [Z Motor]
17-03-18 04:52:28.404 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:52:28.404 -07 000000512 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:28.404 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:28.404 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:52:28.404 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:52:28.414 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:28.414 -07 000000626 INF: FPGA: 'ZDACW 37874' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:52:28.424 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:28.434 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:28.434 -07 000000474 INF: FPGA: Recv ZDACR 37874
17-03-18 04:52:28.444 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:28.444 -07 000000626 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 04:52:28.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:52:28.584 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:52:28.584 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:28.584 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:52:28.584 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:52:28.584 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:28.594 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:28.594 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:52:28.594 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:52:28.594 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:52:28.614 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:28.614 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:52:28.794 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:52:28.794 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 04:52:28.844 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:28.844 -07 000000461 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:52:28.854 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:28.854 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:28.854 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:52:28.854 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 04:52:29.194 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.988112,
17-03-18 04:52:29.804 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:29.804 -07 000000474 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:52:29.814 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.814 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:29.844 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:29.844 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:29.844 -07 000000512 INF: Y Motor: Moved to 72.3481 after 1456 ms (table move)
17-03-18 04:52:29.844 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173376 mm (DAC = 37874)
17-03-18 04:52:29.844 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.844 -07 000000608 INF: FPGA: Recv ZSGSRD 36281
17-03-18 04:52:29.854 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:52:29.854 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.854 -07 000000474 INF: FPGA: Recv ZSGSRD 36283
17-03-18 04:52:29.864 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.864 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.864 -07 000000581 INF: FPGA: Recv ZSGSRD 36269
17-03-18 04:52:29.874 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.874 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.874 -07 000000455 INF: FPGA: Recv ZSGSRD 36274
17-03-18 04:52:29.884 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.884 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.884 -07 000000447 INF: FPGA: Recv ZSGSRD 36278
17-03-18 04:52:29.894 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.894 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.894 -07 000000569 INF: FPGA: Recv ZSGSRD 36276
17-03-18 04:52:29.904 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.904 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.904 -07 000000618 INF: FPGA: Recv ZSGSRD 36285
17-03-18 04:52:29.914 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.914 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.914 -07 000000581 INF: FPGA: Recv ZSGSRD 36280
17-03-18 04:52:29.924 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.924 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.924 -07 000000455 INF: FPGA: Recv ZSGSRD 36284
17-03-18 04:52:29.934 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.934 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:29.934 -07 000000467 INF: FPGA: Recv ZSGSRD 36282
17-03-18 04:52:29.944 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.944 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:29.944 -07 000000480 INF: FPGA: Recv ZPIEZORD 32295
17-03-18 04:52:29.954 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:29.954 -07 000000625 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.8 V.
17-03-18 04:52:29.954 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36279 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36280 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36269 (-172.4 uncal um), Max = 36285 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:52:29.954 -07 000000625 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36279, posNoise = 6, negNoise = 10
17-03-18 04:52:29.954 -07 000000625 INF: Z Motor: After move to -0.173376, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:29.954 -07 000000625 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:52:29.954 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:30.004 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 04:52:30.004 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:30.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:30.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:30.004 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:30.004 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:30.004 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:30.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:30.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:30.004 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:30.004 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:30.014 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:30.024 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:52:30.024 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:52:30.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:30.074 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:30.374 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:30.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:30.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:30.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 04:52:30.414 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:30.414 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:30.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:52:30.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:52:30.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:30.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:52:30.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:52:30.514 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:30.514 -07 000000501 INF: Autofocus start
17-03-18 04:52:30.514 -07 000000501 INF: MeasureProfile start
17-03-18 04:52:30.514 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:30.524 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:30.524 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:30.524 -07 000000501 INF: MeasureProfile done
17-03-18 04:52:30.524 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:52:30.524 -07 000000501 INF: Autofocus finished
17-03-18 04:52:30.724 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:30.724 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:30.724 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173387344302081. ----------
17-03-18 04:52:30.734 -07 000000610 INF: Cycle	130	Tile	16	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:30.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36389, sync = True, waitForSettling = True)
17-03-18 04:52:30.734 -07 000000610 INF: Z Motor: Moving to -0.166578 mm, started at -0.173387 mm, distance = 6.81 um
17-03-18 04:52:30.734 -07 000000610 INF: FPGA: Xmit ZDACW 36389\n [Z Motor]
17-03-18 04:52:30.734 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:52:30.744 -07 000000610 INF: FPGA: 'ZDACW 36389' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:30.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:30.744 -07 000000455 INF: FPGA: Recv ZDACR 36389
17-03-18 04:52:30.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.904 -07 000000382 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:52:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:30.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.914 -07 000000461 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:52:30.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.924 -07 000000581 INF: FPGA: Recv ZSGSRD 35219
17-03-18 04:52:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.934 -07 000000467 INF: FPGA: Recv ZSGSRD 35220
17-03-18 04:52:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.944 -07 000000618 INF: FPGA: Recv ZSGSRD 35218
17-03-18 04:52:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35225
17-03-18 04:52:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.964 -07 000000480 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:52:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.974 -07 000000626 INF: FPGA: Recv ZSGSRD 35219
17-03-18 04:52:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.984 -07 000000382 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:52:30.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:30.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:30.994 -07 000000502 INF: FPGA: Recv ZSGSRD 35215
17-03-18 04:52:31.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:31.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:31.004 -07 000000512 INF: FPGA: Recv ZPIEZORD 30868
17-03-18 04:52:31.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:31.014 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.6 V.
17-03-18 04:52:31.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35221 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35222 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35215 (-165.7 uncal um), Max = 35227 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:31.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35221, posNoise = 6, negNoise = 6
17-03-18 04:52:31.014 -07 000000610 INF: Z Motor: After move to -0.166578, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:31.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:52:31.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:31.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:31.014 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:31.014 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:31.014 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:31.014 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:31.014 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:31.014 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:31.014 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:52:31.014 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:31.014 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:31.014 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:31.014 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:31.014 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:31.024 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:31.024 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:31.024 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:52:31.034 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:52:31.034 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:52:31.034 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:52:31.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36566 150\n [Camera]
17-03-18 04:52:31.234 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:31.664 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:31.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:31.664 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:31.664 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:31.664 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) start.
17-03-18 04:52:31.664 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:31.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:31.664 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:31.664 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:31.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:52:31.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:31.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:31.854 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36566 813
17-03-18 04:52:32.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 965
17-03-18 04:52:32.044 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:52:32.044 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:52:32.044 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:32.044 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:52:32.044 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:52:32.044 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:32.044 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:32.044 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:52:32.044 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:32.054 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:52:32.204 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:32.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:32.214 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:32.214 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:32.214 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:52:32.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:32.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:32.214 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:32.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:32.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:52:32.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 04:52:32.524 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:32.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36566 150' command took 2 ms to send, 1488 ms to get response, and 1495 ms overall
17-03-18 04:52:32.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:32.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166590527856098. ------
17-03-18 04:52:32.534 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:32.534 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17307 mm
17-03-18 04:52:32.534 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:32.534 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:52:32.534 -07 000000447 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:52:32.534 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:32.534 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37807, sync = True, waitForSettling = False)
17-03-18 04:52:32.534 -07 000000467 INF: Z Motor: Moving to -0.173069 mm, started at -0.166591 mm, distance = -6.48 um
17-03-18 04:52:32.544 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:52:32.544 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:32.544 -07 000000581 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:52:32.554 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:52:32.554 -07 000000447 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:32.554 -07 000000447 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:32.554 -07 000000447 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:52:32.554 -07 000000467 INF: FPGA: Xmit ZDACW 37807\n [Z Motor]
17-03-18 04:52:32.554 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:52:32.564 -07 000000467 INF: FPGA: 'ZDACW 37807' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:52:32.564 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:32.574 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:32.584 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:32.584 -07 000000569 INF: FPGA: Recv ZDACR 37807
17-03-18 04:52:32.594 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:32.594 -07 000000467 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:52:32.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:52:32.604 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:52:32.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:32.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:52:32.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:52:32.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:32.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:32.614 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:52:32.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:52:32.624 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:52:32.764 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:32.764 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:52:32.944 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:52:32.944 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:52:32.994 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:33.004 -07 000000501 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:52:33.004 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 04:52:33.004 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:33.004 -07 000000447 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:52:33.004 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 04:52:33.954 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:33.954 -07 000000626 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:52:33.964 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:33.964 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:33.994 -07 000000447 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:33.994 -07 000000447 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:33.994 -07 000000447 INF: Y Motor: Moved to 73.1748 after 1454 ms (table move)
17-03-18 04:52:33.994 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173069 mm (DAC = 37807)
17-03-18 04:52:33.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:33.994 -07 000000467 INF: FPGA: Recv ZSGSRD 36231
17-03-18 04:52:34.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:52:34.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.004 -07 000000455 INF: FPGA: Recv ZSGSRD 36226
17-03-18 04:52:34.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.014 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.014 -07 000000512 INF: FPGA: Recv ZSGSRD 36227
17-03-18 04:52:34.024 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.024 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.024 -07 000000606 INF: FPGA: Recv ZSGSRD 36236
17-03-18 04:52:34.034 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:34.034 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.034 -07 000000569 INF: FPGA: Recv ZSGSRD 36234
17-03-18 04:52:34.044 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.044 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.044 -07 000000447 INF: FPGA: Recv ZSGSRD 36224
17-03-18 04:52:34.054 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.054 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.054 -07 000000501 INF: FPGA: Recv ZSGSRD 36232
17-03-18 04:52:34.064 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.064 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.064 -07 000000608 INF: FPGA: Recv ZSGSRD 36230
17-03-18 04:52:34.074 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.074 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.074 -07 000000618 INF: FPGA: Recv ZSGSRD 36228
17-03-18 04:52:34.084 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.084 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:34.084 -07 000000474 INF: FPGA: Recv ZSGSRD 36225
17-03-18 04:52:34.094 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.094 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:34.094 -07 000000447 INF: FPGA: Recv ZPIEZORD 32255
17-03-18 04:52:34.104 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.104 -07 000000382 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.8 V.
17-03-18 04:52:34.104 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36229 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36229 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36224 (-172.2 uncal um), Max = 36236 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:52:34.104 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36229, posNoise = 7, negNoise = 5
17-03-18 04:52:34.104 -07 000000382 INF: Z Motor: After move to -0.173069, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:34.104 -07 000000382 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:52:34.104 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:34.154 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:52:34.154 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:34.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:34.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:34.154 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:34.154 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:34.154 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:34.154 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:34.154 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:52:34.154 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:34.164 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:34.164 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:34.174 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:52:34.174 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:52:34.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:34.224 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:34.524 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:34.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:34.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:34.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:34.554 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:34.564 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:34.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:52:34.574 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.962185,
17-03-18 04:52:34.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:52:34.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:34.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:34.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:52:34.664 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:34.664 -07 000000608 INF: Autofocus start
17-03-18 04:52:34.664 -07 000000608 INF: MeasureProfile start
17-03-18 04:52:34.664 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:34.674 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:34.674 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:34.674 -07 000000608 INF: MeasureProfile done
17-03-18 04:52:34.674 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:52:34.674 -07 000000608 INF: Autofocus finished
17-03-18 04:52:34.874 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:34.874 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:34.874 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173066133694993. ----------
17-03-18 04:52:34.874 -07 000000610 INF: Cycle	130	Tile	17	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:34.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36339, sync = True, waitForSettling = True)
17-03-18 04:52:34.884 -07 000000610 INF: Z Motor: Moving to -0.166349 mm, started at -0.173066 mm, distance = 6.72 um
17-03-18 04:52:34.884 -07 000000610 INF: FPGA: Xmit ZDACW 36339\n [Z Motor]
17-03-18 04:52:34.884 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:52:34.894 -07 000000610 INF: FPGA: 'ZDACW 36339' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:34.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:34.894 -07 000000424 INF: FPGA: Recv ZDACR 36339
17-03-18 04:52:34.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:34.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:35.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.054 -07 000000474 INF: FPGA: Recv ZSGSRD 35189
17-03-18 04:52:35.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:35.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.064 -07 000000502 INF: FPGA: Recv ZSGSRD 35187
17-03-18 04:52:35.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.074 -07 000000569 INF: FPGA: Recv ZSGSRD 35183
17-03-18 04:52:35.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.084 -07 000000480 INF: FPGA: Recv ZSGSRD 35181
17-03-18 04:52:35.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.094 -07 000000625 INF: FPGA: Recv ZSGSRD 35186
17-03-18 04:52:35.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.104 -07 000000579 INF: FPGA: Recv ZSGSRD 35186
17-03-18 04:52:35.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35185
17-03-18 04:52:35.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.124 -07 000000512 INF: FPGA: Recv ZSGSRD 35184
17-03-18 04:52:35.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.134 -07 000000479 INF: FPGA: Recv ZSGSRD 35185
17-03-18 04:52:35.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:35.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35181
17-03-18 04:52:35.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:35.154 -07 000000501 INF: FPGA: Recv ZPIEZORD 30878
17-03-18 04:52:35.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:35.164 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.5 V.
17-03-18 04:52:35.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35185 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35185 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35181 (-165.5 uncal um), Max = 35189 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:52:35.164 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35185, posNoise = 4, negNoise = 4
17-03-18 04:52:35.164 -07 000000610 INF: Z Motor: After move to -0.166349, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:35.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:52:35.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:35.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:35.164 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:35.164 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:35.164 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:35.164 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:35.164 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:35.164 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:35.164 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:35.164 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:35.164 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:35.164 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:35.174 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:35.174 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:35.174 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:35.174 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:35.184 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:52:35.184 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:35.184 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:52:35.184 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:35.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36516 150\n [Camera]
17-03-18 04:52:35.384 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:35.814 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:35.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:35.814 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:35.814 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:35.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:35.814 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:35.814 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:35.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:35.824 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:35.824 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:36.004 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36516 815
17-03-18 04:52:36.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:36.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:52:36.194 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:52:36.194 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:36.194 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:52:36.194 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:52:36.194 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:36.194 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:52:36.194 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:52:36.194 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:36.204 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:52:36.364 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:36.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:36.364 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:36.364 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:36.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:36.364 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:36.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:36.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:52:36.374 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:36.374 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:52:36.554 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:36.554 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:36.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36516 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:52:36.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:36.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166359256218994. ------
17-03-18 04:52:36.554 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:36.554 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17226 mm
17-03-18 04:52:36.554 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:36.554 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:52:36.554 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:52:36.674 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:36.684 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:36.684 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 04:52:36.684 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:36.684 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37630, sync = True, waitForSettling = False)
17-03-18 04:52:36.684 -07 000000512 INF: Z Motor: Moving to -0.172259 mm, started at -0.166359 mm, distance = -5.90 um
17-03-18 04:52:36.684 -07 000000501 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:52:36.684 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 123 ms overall
17-03-18 04:52:36.684 -07 000000382 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:36.684 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:36.684 -07 000000382 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:52:36.694 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:36.704 -07 000000512 INF: FPGA: Xmit ZDACW 37630\n [Z Motor]
17-03-18 04:52:36.704 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:52:36.714 -07 000000512 INF: FPGA: 'ZDACW 37630' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:36.714 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:36.714 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:36.714 -07 000000625 INF: FPGA: Recv ZDACR 37630
17-03-18 04:52:36.724 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:36.724 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:52:36.754 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:52:36.754 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:52:36.754 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:36.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:52:36.754 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:52:36.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:36.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:36.764 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:52:36.764 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:52:36.764 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:52:36.884 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:36.884 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:37.064 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:52:37.064 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:52:37.104 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:37.114 -07 000000618 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:52:37.114 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:37.114 -07 000000382 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:37.114 -07 000000382 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:52:37.114 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.848 mm, average velocity = 2.202 mm/sec
17-03-18 04:52:38.064 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:38.064 -07 000000502 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:52:38.074 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:38.074 -07 000000382 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:38.094 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:38.094 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:38.094 -07 000000382 INF: Y Motor: Moved to 74.0068 after 1535 ms (table move)
17-03-18 04:52:38.094 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172259 mm (DAC = 37630)
17-03-18 04:52:38.094 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.104 -07 000000474 INF: FPGA: Recv ZSGSRD 36110
17-03-18 04:52:38.104 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:52:38.104 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.104 -07 000000480 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:52:38.114 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.114 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.114 -07 000000512 INF: FPGA: Recv ZSGSRD 36106
17-03-18 04:52:38.124 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.124 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.124 -07 000000424 INF: FPGA: Recv ZSGSRD 36109
17-03-18 04:52:38.134 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.134 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.134 -07 000000467 INF: FPGA: Recv ZSGSRD 36101
17-03-18 04:52:38.144 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.144 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.144 -07 000000608 INF: FPGA: Recv ZSGSRD 36108
17-03-18 04:52:38.154 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.154 -07 000000626 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:52:38.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.164 -07 000000569 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:52:38.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.174 -07 000000479 INF: FPGA: Recv ZSGSRD 36110
17-03-18 04:52:38.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:38.184 -07 000000625 INF: FPGA: Recv ZSGSRD 36108
17-03-18 04:52:38.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.194 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:38.194 -07 000000618 INF: FPGA: Recv ZPIEZORD 32087
17-03-18 04:52:38.204 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.204 -07 000000447 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.9 V.
17-03-18 04:52:38.204 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36106 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36107 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36101 (-171.4 uncal um), Max = 36110 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:52:38.204 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36106, posNoise = 4, negNoise = 5
17-03-18 04:52:38.204 -07 000000447 INF: Z Motor: After move to -0.172259, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:38.204 -07 000000447 INF: Z Motor: Settle wait time = 1416 ms, measure time = 103 ms (allowed 150 ms), total time = 1519 ms
17-03-18 04:52:38.204 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:38.254 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1693 ms
17-03-18 04:52:38.254 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:38.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:38.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:38.254 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:38.254 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:38.254 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:38.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:38.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:52:38.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:38.264 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:38.264 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:38.264 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:52:38.264 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:52:38.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:38.314 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:38.614 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:38.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:38.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:38.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:38.654 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:38.654 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:38.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:52:38.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:52:38.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:38.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:38.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:52:38.754 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:38.754 -07 000000467 INF: Autofocus start
17-03-18 04:52:38.754 -07 000000467 INF: MeasureProfile start
17-03-18 04:52:38.754 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:38.764 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:38.764 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:38.774 -07 000000467 INF: MeasureProfile done
17-03-18 04:52:38.774 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:52:38.774 -07 000000467 INF: Autofocus finished
17-03-18 04:52:38.964 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:38.964 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:38.964 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172275955601556. ----------
17-03-18 04:52:38.974 -07 000000610 INF: Cycle	130	Tile	18	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:38.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36145, sync = True, waitForSettling = True)
17-03-18 04:52:38.974 -07 000000610 INF: Z Motor: Moving to -0.165461 mm, started at -0.172276 mm, distance = 6.81 um
17-03-18 04:52:38.974 -07 000000610 INF: FPGA: Xmit ZDACW 36145\n [Z Motor]
17-03-18 04:52:38.974 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:52:38.984 -07 000000610 INF: FPGA: 'ZDACW 36145' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:52:38.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:38.984 -07 000000447 INF: FPGA: Recv ZDACR 36145
17-03-18 04:52:38.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:38.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:39.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.144 -07 000000569 INF: FPGA: Recv ZSGSRD 35044
17-03-18 04:52:39.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:39.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.154 -07 000000382 INF: FPGA: Recv ZSGSRD 35051
17-03-18 04:52:39.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.164 -07 000000606 INF: FPGA: Recv ZSGSRD 35047
17-03-18 04:52:39.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.174 -07 000000626 INF: FPGA: Recv ZSGSRD 35045
17-03-18 04:52:39.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.184 -07 000000502 INF: FPGA: Recv ZSGSRD 35048
17-03-18 04:52:39.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.194 -07 000000569 INF: FPGA: Recv ZSGSRD 35053
17-03-18 04:52:39.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35044
17-03-18 04:52:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.214 -07 000000424 INF: FPGA: Recv ZSGSRD 35046
17-03-18 04:52:39.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.224 -07 000000512 INF: FPGA: Recv ZSGSRD 35049
17-03-18 04:52:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:39.234 -07 000000479 INF: FPGA: Recv ZSGSRD 35047
17-03-18 04:52:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:39.244 -07 000000618 INF: FPGA: Recv ZPIEZORD 30695
17-03-18 04:52:39.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:39.254 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.515 V. Piezo Error = -9.6 V.
17-03-18 04:52:39.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35047 (-164.6 uncal um), Error = 0.9 uncal um, Median = 35047 (-164.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35044 (-164.6 uncal um), Max = 35053 (-164.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:52:39.254 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35047, posNoise = 6, negNoise = 3
17-03-18 04:52:39.254 -07 000000610 INF: Z Motor: After move to -0.165461, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:39.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:52:39.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:39.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:39.254 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:39.254 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:39.254 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:39.254 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:39.254 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:39.254 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:39.254 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:39.254 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:39.254 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:39.254 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:39.264 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:52:39.264 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:39.264 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:39.264 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:39.274 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:39.274 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:39.274 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:52:39.274 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:52:39.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36322 150\n [Camera]
17-03-18 04:52:39.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:39.904 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:39.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:39.904 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:39.904 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:39.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:39.904 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:39.904 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:39.904 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:39.914 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:39.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:39.934 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.960826,
17-03-18 04:52:40.094 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36322 813
17-03-18 04:52:40.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:40.294 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:52:40.294 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:52:40.294 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:40.294 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:52:40.294 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:52:40.294 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:40.294 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:40.294 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:52:40.294 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:52:40.304 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:52:40.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:40.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:40.454 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:40.454 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:40.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:52:40.454 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:40.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:40.454 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:40.454 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:40.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:52:40.644 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:40.644 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:40.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36322 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-18 04:52:40.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:52:40.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165472714943431. ------
17-03-18 04:52:40.644 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:40.644 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17185 mm
17-03-18 04:52:40.644 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:40.654 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:40.654 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:40.654 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:52:40.654 -07 000000625 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 04:52:40.654 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:40.654 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37540, sync = True, waitForSettling = False)
17-03-18 04:52:40.654 -07 000000382 INF: Z Motor: Moving to -0.171847 mm, started at -0.165473 mm, distance = -6.37 um
17-03-18 04:52:40.654 -07 000000502 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:52:40.664 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:40.664 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:40.664 -07 000000382 INF: FPGA: Xmit ZDACW 37540\n [Z Motor]
17-03-18 04:52:40.664 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:52:40.664 -07 000000625 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:40.664 -07 000000625 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:52:40.674 -07 000000382 INF: FPGA: 'ZDACW 37540' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:52:40.674 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:40.684 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:40.694 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:40.694 -07 000000479 INF: FPGA: Recv ZDACR 37540
17-03-18 04:52:40.704 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:40.704 -07 000000382 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:52:40.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:52:40.834 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:52:40.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:40.844 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:52:40.844 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:40.844 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:52:40.844 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:40.844 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:52:40.844 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:52:40.844 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:52:40.874 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:40.874 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 04:52:41.054 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:52:41.054 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:52:41.094 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:41.094 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:52:41.104 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:41.104 -07 000000625 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:41.104 -07 000000625 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:52:41.104 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.147 mm/sec
17-03-18 04:52:41.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:42.054 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:42.054 -07 000000424 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:52:42.064 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:42.064 -07 000000625 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:42.084 -07 000000625 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:42.084 -07 000000625 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:42.084 -07 000000625 INF: Y Motor: Moved to 74.8306 after 1428 ms (table move)
17-03-18 04:52:42.084 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171847 mm (DAC = 37540)
17-03-18 04:52:42.084 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.084 -07 000000474 INF: FPGA: Recv ZSGSRD 36048
17-03-18 04:52:42.094 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:42.094 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.094 -07 000000455 INF: FPGA: Recv ZSGSRD 36034
17-03-18 04:52:42.104 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.104 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.104 -07 000000606 INF: FPGA: Recv ZSGSRD 36044
17-03-18 04:52:42.114 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.114 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.114 -07 000000382 INF: FPGA: Recv ZSGSRD 36046
17-03-18 04:52:42.124 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.124 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.124 -07 000000618 INF: FPGA: Recv ZSGSRD 36040
17-03-18 04:52:42.134 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.134 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.134 -07 000000467 INF: FPGA: Recv ZSGSRD 36044
17-03-18 04:52:42.144 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.144 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.144 -07 000000455 INF: FPGA: Recv ZSGSRD 36038
17-03-18 04:52:42.154 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.154 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.154 -07 000000501 INF: FPGA: Recv ZSGSRD 36038
17-03-18 04:52:42.164 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.164 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.164 -07 000000502 INF: FPGA: Recv ZSGSRD 36039
17-03-18 04:52:42.174 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.174 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:42.174 -07 000000479 INF: FPGA: Recv ZSGSRD 36035
17-03-18 04:52:42.184 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.184 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:42.184 -07 000000581 INF: FPGA: Recv ZPIEZORD 32008
17-03-18 04:52:42.194 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.194 -07 000000579 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -8.9 V.
17-03-18 04:52:42.194 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36041 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36040 (-171.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36034 (-170.9 uncal um), Max = 36048 (-171.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:52:42.194 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36041, posNoise = 7, negNoise = 7
17-03-18 04:52:42.194 -07 000000579 INF: Z Motor: After move to -0.171847, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:42.194 -07 000000579 INF: Z Motor: Settle wait time = 1431 ms, measure time = 107 ms (allowed 150 ms), total time = 1538 ms
17-03-18 04:52:42.194 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:42.244 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 04:52:42.244 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:42.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:42.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:42.244 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:42.244 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:42.244 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:42.244 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:42.244 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:52:42.244 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:42.254 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:52:42.254 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:42.264 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:52:42.264 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:52:42.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:42.314 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:42.614 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:42.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:42.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:42.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 04:52:42.654 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:42.654 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:42.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:52:42.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:52:42.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:42.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:52:42.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:52:42.754 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:42.754 -07 000000382 INF: Autofocus start
17-03-18 04:52:42.754 -07 000000382 INF: MeasureProfile start
17-03-18 04:52:42.754 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:42.764 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:42.764 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:42.764 -07 000000382 INF: MeasureProfile done
17-03-18 04:52:42.764 -07 000000382 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:52:42.764 -07 000000382 INF: Autofocus finished
17-03-18 04:52:42.964 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:42.964 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:42.974 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171858381812342. ----------
17-03-18 04:52:42.974 -07 000000610 INF: Cycle	130	Tile	19	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:42.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36020, sync = True, waitForSettling = True)
17-03-18 04:52:42.974 -07 000000610 INF: Z Motor: Moving to -0.164889 mm, started at -0.171858 mm, distance = 6.97 um
17-03-18 04:52:42.974 -07 000000610 INF: FPGA: Xmit ZDACW 36020\n [Z Motor]
17-03-18 04:52:42.974 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:52:42.984 -07 000000610 INF: FPGA: 'ZDACW 36020' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:42.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:42.984 -07 000000461 INF: FPGA: Recv ZDACR 36020
17-03-18 04:52:42.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:42.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:43.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.144 -07 000000606 INF: FPGA: Recv ZSGSRD 34959
17-03-18 04:52:43.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.154 -07 000000618 INF: FPGA: Recv ZSGSRD 34963
17-03-18 04:52:43.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.164 -07 000000474 INF: FPGA: Recv ZSGSRD 34954
17-03-18 04:52:43.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.174 -07 000000512 INF: FPGA: Recv ZSGSRD 34947
17-03-18 04:52:43.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.184 -07 000000461 INF: FPGA: Recv ZSGSRD 34963
17-03-18 04:52:43.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.194 -07 000000447 INF: FPGA: Recv ZSGSRD 34963
17-03-18 04:52:43.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.204 -07 000000625 INF: FPGA: Recv ZSGSRD 34959
17-03-18 04:52:43.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.214 -07 000000480 INF: FPGA: Recv ZSGSRD 34956
17-03-18 04:52:43.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.224 -07 000000467 INF: FPGA: Recv ZSGSRD 34953
17-03-18 04:52:43.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:43.234 -07 000000501 INF: FPGA: Recv ZSGSRD 34967
17-03-18 04:52:43.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:43.244 -07 000000447 INF: FPGA: Recv ZPIEZORD 30567
17-03-18 04:52:43.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:43.254 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.496 V. Piezo Error = -9.7 V.
17-03-18 04:52:43.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34958 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34959 (-164.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 34947 (-164.0 uncal um), Max = 34967 (-164.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:52:43.254 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34958, posNoise = 9, negNoise = 11
17-03-18 04:52:43.254 -07 000000610 INF: Z Motor: After move to -0.164889, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:43.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:52:43.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:43.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:43.254 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:43.254 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:43.254 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:43.254 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:43.254 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:43.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:43.254 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:43.254 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:43.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:43.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:43.264 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:52:43.264 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:43.264 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:43.264 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:43.274 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:52:43.274 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:52:43.274 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:52:43.274 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:52:43.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36197 150\n [Camera]
17-03-18 04:52:43.474 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:43.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:43.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:43.904 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:43.904 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:43.904 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) start.
17-03-18 04:52:43.904 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:43.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:43.914 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:43.914 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:43.914 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:52:44.094 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36197 813
17-03-18 04:52:44.244 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:44.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:52:44.284 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:52:44.284 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:44.284 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:44.284 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:52:44.284 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:52:44.284 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:52:44.284 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:44.294 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:52:44.294 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:52:44.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:44.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:44.454 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:44.454 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:44.454 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:52:44.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:44.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:44.454 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:44.454 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:44.454 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:52:44.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:44.644 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:44.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36197 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-18 04:52:44.844 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:52:44.844 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:52:44.844 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:44.844 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:52:44.854 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:52:44.854 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:44.854 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:44.854 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:52:44.854 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:52:44.854 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:52:44.864 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:52:44.894 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:52:44.894 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:52:44.944 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:52:45.064 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:52:45.074 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:52:45.074 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 04:52:45.084 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:52:45.104 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:52:45.404 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.986717,
17-03-18 04:52:45.604 -07 000000606 INF: FPGA: Recv EMIN
17-03-18 04:52:45.604 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 522 ms overall
17-03-18 04:52:45.604 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:52:45.604 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 04:52:45.614 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:45.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:52:45.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164900960062814. ------
17-03-18 04:52:45.614 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:45.614 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13922 mm
17-03-18 04:52:45.614 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:45.614 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:45.624 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:52:45.624 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:45.624 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:52:45.624 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 04:52:45.624 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30413, sync = True, waitForSettling = False)
17-03-18 04:52:45.624 -07 000000502 INF: Z Motor: Moving to -0.139222 mm, started at -0.164901 mm, distance = 25.68 um
17-03-18 04:52:45.634 -07 000000502 INF: FPGA: Xmit ZDACW 30413\n [Z Motor]
17-03-18 04:52:45.634 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:52:45.644 -07 000000502 INF: FPGA: 'ZDACW 30413' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:52:45.644 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:45.644 -07 000000606 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:52:45.654 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:52:45.654 -07 000000512 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:45.654 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:45.654 -07 000000467 INF: FPGA: Recv ZDACR 30413
17-03-18 04:52:45.654 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:52:45.654 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:52:45.664 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:52:45.664 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:52:45.664 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:52:45.824 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:45.824 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:46.714 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:46.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:47.284 -07 000000479 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 04:52:47.284 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1631 ms overall
17-03-18 04:52:47.284 -07 000000512 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:52:47.284 -07 000000512 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:52:47.294 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.918 mm, average velocity = 9.147 mm/sec
17-03-18 04:52:50.144 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:50.144 -07 000000461 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:52:50.154 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.154 -07 000000512 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:50.194 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:50.194 -07 000000512 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:52:50.194 -07 000000512 INF: Y Motor: Moved to 59.9097 after 4570 ms
17-03-18 04:52:50.194 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139222 mm (DAC = 30413)
17-03-18 04:52:50.194 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.194 -07 000000455 INF: FPGA: Recv ZSGSRD 30959
17-03-18 04:52:50.204 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:50.204 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30954
17-03-18 04:52:50.214 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.214 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.214 -07 000000502 INF: FPGA: Recv ZSGSRD 30960
17-03-18 04:52:50.224 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.224 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.224 -07 000000479 INF: FPGA: Recv ZSGSRD 30965
17-03-18 04:52:50.234 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.234 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.234 -07 000000480 INF: FPGA: Recv ZSGSRD 30962
17-03-18 04:52:50.244 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.244 -07 000000581 INF: FPGA: Recv ZSGSRD 30964
17-03-18 04:52:50.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.254 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30961
17-03-18 04:52:50.264 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.264 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.264 -07 000000424 INF: FPGA: Recv ZSGSRD 30966
17-03-18 04:52:50.274 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.274 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.274 -07 000000569 INF: FPGA: Recv ZSGSRD 30963
17-03-18 04:52:50.284 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.284 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:50.284 -07 000000626 INF: FPGA: Recv ZSGSRD 30956
17-03-18 04:52:50.294 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.294 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:50.294 -07 000000461 INF: FPGA: Recv ZPIEZORD 26376
17-03-18 04:52:50.304 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:50.304 -07 000000474 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -10.1 V.
17-03-18 04:52:50.304 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30961 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30962 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30954 (-138.4 uncal um), Max = 30966 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:52:50.304 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30961, posNoise = 5, negNoise = 7
17-03-18 04:52:50.304 -07 000000474 INF: Z Motor: After move to -0.139222, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:50.304 -07 000000474 INF: Z Motor: Settle wait time = 4572 ms, measure time = 105 ms (allowed 150 ms), total time = 4677 ms
17-03-18 04:52:50.304 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:50.354 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4733 ms
17-03-18 04:52:50.354 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:50.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:50.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:50.354 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:50.354 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:50.354 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:50.354 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:50.354 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:50.354 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:52:50.384 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 04:52:50.384 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:50.384 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:52:50.384 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:50.394 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:52:50.404 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 04:52:50.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:50.454 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:52:50.754 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:52:50.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:52:50.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:50.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:50.784 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.997626,
17-03-18 04:52:50.784 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:50.784 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:50.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 04:52:50.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:52:50.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:50.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:50.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:52:50.884 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:50.884 -07 000000626 INF: Image SNR check: start
17-03-18 04:52:50.884 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:50.894 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:50.894 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:50.894 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=113.34]
17-03-18 04:52:50.894 -07 000000626 INF: Autofocus start
17-03-18 04:52:50.894 -07 000000626 INF: MeasureProfile start
17-03-18 04:52:50.904 -07 000000626 INF: MeasureProfile done
17-03-18 04:52:50.914 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:52:50.914 -07 000000626 INF: Autofocus finished
17-03-18 04:52:51.094 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:51.094 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:51.094 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139223384132196. ----------
17-03-18 04:52:51.104 -07 000000610 INF: Cycle	130	Tile	1	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:51.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-18 04:52:51.104 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.139223 mm, distance = 6.84 um
17-03-18 04:52:51.104 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-18 04:52:51.104 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:52:51.114 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:52:51.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:51.114 -07 000000447 INF: FPGA: Recv ZDACR 28920
17-03-18 04:52:51.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.274 -07 000000480 INF: FPGA: Recv ZSGSRD 29897
17-03-18 04:52:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.284 -07 000000608 INF: FPGA: Recv ZSGSRD 29897
17-03-18 04:52:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29891
17-03-18 04:52:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.304 -07 000000424 INF: FPGA: Recv ZSGSRD 29895
17-03-18 04:52:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.314 -07 000000618 INF: FPGA: Recv ZSGSRD 29901
17-03-18 04:52:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.324 -07 000000461 INF: FPGA: Recv ZSGSRD 29898
17-03-18 04:52:51.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.334 -07 000000625 INF: FPGA: Recv ZSGSRD 29894
17-03-18 04:52:51.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.344 -07 000000512 INF: FPGA: Recv ZSGSRD 29898
17-03-18 04:52:51.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.354 -07 000000581 INF: FPGA: Recv ZSGSRD 29898
17-03-18 04:52:51.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:51.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29898
17-03-18 04:52:51.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:51.374 -07 000000474 INF: FPGA: Recv ZPIEZORD 25253
17-03-18 04:52:51.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:51.384 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -10.2 V.
17-03-18 04:52:51.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29897 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29898 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29891 (-131.6 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:51.384 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29897, posNoise = 4, negNoise = 6
17-03-18 04:52:51.384 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:51.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:52:51.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:51.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:51.384 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:51.384 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:51.384 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:51.384 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:51.384 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:51.384 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:52:51.384 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:52:51.384 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:51.384 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:51.384 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:51.394 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:51.394 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:51.404 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:52:51.404 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:52:51.404 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:52:51.404 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:51.414 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:52:51.414 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:51.414 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:52:51.424 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 04:52:51.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29097 150\n [Camera]
17-03-18 04:52:51.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:51.714 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:52.054 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-18 04:52:52.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-18 04:52:52.054 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:52.054 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-18 04:52:52.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-18 04:52:52.054 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:52.054 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:52.054 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:52:52.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:52.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:52:52.244 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29097 813
17-03-18 04:52:52.394 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:52.434 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:52:52.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:52:52.434 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:52:52.434 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:52.434 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:52:52.434 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:52.434 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:52:52.434 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:52:52.434 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:52:52.444 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:52:52.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:52.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:52.594 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:52.604 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:52.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:52.604 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:52.724 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:52.724 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:52:52.724 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:52.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:52:52.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:52.794 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:52.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29097 150' command took 2 ms to send, 1360 ms to get response, and 1368 ms overall
17-03-18 04:52:52.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:52:52.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132388022413362. ------
17-03-18 04:52:52.794 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:52.794 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13882 mm
17-03-18 04:52:52.794 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:52.794 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:52:52.794 -07 000000447 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 04:52:52.794 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30325, sync = True, waitForSettling = False)
17-03-18 04:52:52.794 -07 000000502 INF: Z Motor: Moving to -0.138819 mm, started at -0.132388 mm, distance = -6.43 um
17-03-18 04:52:52.794 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:52.804 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:52.804 -07 000000502 INF: FPGA: Xmit ZDACW 30325\n [Z Motor]
17-03-18 04:52:52.804 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:52:52.814 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:52.814 -07 000000502 INF: FPGA: 'ZDACW 30325' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:52:52.814 -07 000000474 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:52:52.824 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:52.824 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:52:52.824 -07 000000447 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:52.824 -07 000000447 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:52.824 -07 000000447 INF: Y Motor: Moving 1333 steps0
17-03-18 04:52:52.834 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:52.834 -07 000000467 INF: FPGA: Recv ZDACR 30325
17-03-18 04:52:52.844 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:52.844 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:52:52.844 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:53.024 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:53.024 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:52:53.104 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:52:53.104 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:52:53.104 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:53.104 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:53.114 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:52:53.114 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:52:53.114 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:53.114 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-18 04:52:53.114 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:53.114 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 04:52:53.214 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:52:53.214 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 04:52:53.254 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:53.264 -07 000000581 INF: FPGA: Recv YRDPOS 124378
17-03-18 04:52:53.264 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:52:53.264 -07 000000447 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:53.264 -07 000000447 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:52:53.264 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.833 mm, average velocity = 2.093 mm/sec
17-03-18 04:52:54.214 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:54.214 -07 000000608 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:52:54.224 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.224 -07 000000447 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:54.254 -07 000000447 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:54.254 -07 000000447 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:52:54.254 -07 000000447 INF: Y Motor: Moved to 60.7319 after 1455 ms (table move)
17-03-18 04:52:54.254 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138819 mm (DAC = 30325)
17-03-18 04:52:54.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.264 -07 000000618 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:52:54.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:52:54.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.264 -07 000000501 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:52:54.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:52:54.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.284 -07 000000467 INF: FPGA: Recv ZSGSRD 30886
17-03-18 04:52:54.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.294 -07 000000579 INF: FPGA: Recv ZSGSRD 30895
17-03-18 04:52:54.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.304 -07 000000626 INF: FPGA: Recv ZSGSRD 30897
17-03-18 04:52:54.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.314 -07 000000424 INF: FPGA: Recv ZSGSRD 30903
17-03-18 04:52:54.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.324 -07 000000608 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:52:54.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.334 -07 000000467 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:52:54.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.344 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:54.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:52:54.354 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.354 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:54.354 -07 000000626 INF: FPGA: Recv ZPIEZORD 26593
17-03-18 04:52:54.364 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:54.364 -07 000000569 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.5 V.
17-03-18 04:52:54.364 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30900 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30901 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30907 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 04:52:54.364 -07 000000569 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30900, posNoise = 7, negNoise = 14
17-03-18 04:52:54.364 -07 000000569 INF: Z Motor: After move to -0.138819, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:54.364 -07 000000569 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:52:54.364 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:54.414 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:52:54.414 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:54.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:54.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:54.414 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:54.414 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:54.414 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:54.414 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:54.414 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:54.414 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:54.424 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:54.424 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:54.434 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:52:54.434 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:52:54.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:54.484 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:54.774 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:54.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:54.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:54.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 04:52:54.814 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:54.814 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:54.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:52:54.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:52:54.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:54.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:52:54.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 04:52:54.924 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:54.924 -07 000000474 INF: Autofocus start
17-03-18 04:52:54.924 -07 000000474 INF: MeasureProfile start
17-03-18 04:52:54.924 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:54.934 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:54.934 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:54.934 -07 000000474 INF: MeasureProfile done
17-03-18 04:52:54.934 -07 000000474 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:52:54.934 -07 000000474 INF: Autofocus finished
17-03-18 04:52:55.134 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:55.134 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:52:55.134 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138831507191549. ----------
17-03-18 04:52:55.134 -07 000000610 INF: Cycle	130	Tile	2	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:55.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28849, sync = True, waitForSettling = True)
17-03-18 04:52:55.144 -07 000000610 INF: Z Motor: Moving to -0.132062 mm, started at -0.138832 mm, distance = 6.77 um
17-03-18 04:52:55.144 -07 000000610 INF: FPGA: Xmit ZDACW 28849\n [Z Motor]
17-03-18 04:52:55.144 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:52:55.154 -07 000000610 INF: FPGA: 'ZDACW 28849' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:52:55.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:55.154 -07 000000455 INF: FPGA: Recv ZDACR 28849
17-03-18 04:52:55.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:55.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.314 -07 000000479 INF: FPGA: Recv ZSGSRD 29838
17-03-18 04:52:55.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:55.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:52:55.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.334 -07 000000626 INF: FPGA: Recv ZSGSRD 29851
17-03-18 04:52:55.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.344 -07 000000581 INF: FPGA: Recv ZSGSRD 29841
17-03-18 04:52:55.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:52:55.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.364 -07 000000618 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:52:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.374 -07 000000474 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:52:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.384 -07 000000480 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:52:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.394 -07 000000569 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:52:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:55.404 -07 000000608 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:52:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:55.414 -07 000000480 INF: FPGA: Recv ZPIEZORD 25220
17-03-18 04:52:55.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:55.424 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 04:52:55.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29838 (-131.2 uncal um), Max = 29851 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:52:55.424 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 5, negNoise = 8
17-03-18 04:52:55.424 -07 000000610 INF: Z Motor: After move to -0.132062, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:55.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:52:55.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:55.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:55.424 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:55.424 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:55.424 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:55.424 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:55.424 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:55.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:55.424 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:55.424 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:55.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:55.424 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:55.424 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:55.424 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:55.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:55.434 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:55.444 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:52:55.444 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:52:55.444 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:52:55.444 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:52:55.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29026 150\n [Camera]
17-03-18 04:52:55.644 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:52:56.074 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:52:56.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:52:56.074 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:56.074 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:52:56.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:52:56.074 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:56.074 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:56.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:52:56.074 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:56.084 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:52:56.164 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.996267,
17-03-18 04:52:56.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29026 813
17-03-18 04:52:56.414 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:52:56.474 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:52:56.474 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:52:56.474 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:56.474 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:56.474 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:52:56.474 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:52:56.474 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:52:56.474 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:56.484 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:56.484 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:52:56.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:52:56.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:52:56.624 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:52:56.624 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:52:56.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:52:56.624 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:52:56.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:52:56.624 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:52:56.624 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:52:56.624 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:52:56.714 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:52:56.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:52:56.814 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:52:56.814 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:52:56.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29026 150' command took 2 ms to send, 1366 ms to get response, and 1368 ms overall
17-03-18 04:52:56.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:52:56.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132060387594133. ------
17-03-18 04:52:56.824 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13884 mm
17-03-18 04:52:56.824 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:52:56.824 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:56.824 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30330, sync = True, waitForSettling = False)
17-03-18 04:52:56.824 -07 000000474 INF: Z Motor: Moving to -0.138842 mm, started at -0.132060 mm, distance = -6.78 um
17-03-18 04:52:56.824 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:52:56.824 -07 000000447 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:52:56.824 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:56.834 -07 000000474 INF: FPGA: Xmit ZDACW 30330\n [Z Motor]
17-03-18 04:52:56.834 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:56.834 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:52:56.844 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:56.844 -07 000000474 INF: FPGA: 'ZDACW 30330' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:52:56.844 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:52:56.854 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:52:56.854 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:52:56.854 -07 000000447 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:56.854 -07 000000447 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:52:56.854 -07 000000447 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:52:56.864 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:56.864 -07 000000502 INF: FPGA: Recv ZDACR 30330
17-03-18 04:52:56.874 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:52:56.874 -07 000000474 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:52:56.874 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:52:57.034 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:52:57.034 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:52:57.034 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:57.034 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:52:57.034 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:52:57.034 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:57.034 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:52:57.034 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:52:57.034 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:52:57.044 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:52:57.054 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:52:57.054 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:52:57.254 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:52:57.254 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 04:52:57.314 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:57.314 -07 000000512 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:52:57.324 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:57.324 -07 000000447 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:57.324 -07 000000447 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:52:57.324 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.841 mm, average velocity = 2.102 mm/sec
17-03-18 04:52:58.274 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:52:58.274 -07 000000479 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:52:58.284 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.284 -07 000000447 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:52:58.314 -07 000000447 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:52:58.314 -07 000000447 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:52:58.314 -07 000000447 INF: Y Motor: Moved to 61.5625 after 1486 ms (table move)
17-03-18 04:52:58.314 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138842 mm (DAC = 30330)
17-03-18 04:52:58.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.324 -07 000000626 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:52:58.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 7 ms overall
17-03-18 04:52:58.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.324 -07 000000467 INF: FPGA: Recv ZSGSRD 30896
17-03-18 04:52:58.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:52:58.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.334 -07 000000618 INF: FPGA: Recv ZSGSRD 30903
17-03-18 04:52:58.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.344 -07 000000501 INF: FPGA: Recv ZSGSRD 30896
17-03-18 04:52:58.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.354 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.354 -07 000000581 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:52:58.364 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.364 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.364 -07 000000606 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:52:58.374 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.374 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.374 -07 000000512 INF: FPGA: Recv ZSGSRD 30913
17-03-18 04:52:58.384 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.384 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.384 -07 000000479 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:52:58.394 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.394 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.394 -07 000000424 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:52:58.404 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.404 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:58.404 -07 000000382 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:52:58.414 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.414 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:58.414 -07 000000461 INF: FPGA: Recv ZPIEZORD 26632
17-03-18 04:52:58.424 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:58.424 -07 000000480 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.4 V.
17-03-18 04:52:58.424 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30902 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30902 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30896 (-138.0 uncal um), Max = 30913 (-138.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:58.424 -07 000000480 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30902, posNoise = 11, negNoise = 6
17-03-18 04:52:58.424 -07 000000480 INF: Z Motor: After move to -0.138842, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:58.424 -07 000000480 INF: Z Motor: Settle wait time = 1490 ms, measure time = 104 ms (allowed 150 ms), total time = 1594 ms
17-03-18 04:52:58.424 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:52:58.474 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1646 ms
17-03-18 04:52:58.474 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:52:58.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:58.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:58.474 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:52:58.474 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:58.474 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:58.474 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:58.474 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:58.474 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:52:58.484 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:52:58.484 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:52:58.484 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:52:58.484 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:52:58.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:52:58.534 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:52:58.834 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:52:58.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:52:58.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:52:58.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:52:58.874 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:52:58.874 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:52:58.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:52:58.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:52:58.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:52:58.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:52:58.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:52:58.974 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:52:58.974 -07 000000480 INF: Autofocus start
17-03-18 04:52:58.974 -07 000000480 INF: MeasureProfile start
17-03-18 04:52:58.974 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:52:58.984 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:52:58.984 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:52:58.984 -07 000000480 INF: MeasureProfile done
17-03-18 04:52:58.984 -07 000000480 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:52:58.984 -07 000000480 INF: Autofocus finished
17-03-18 04:52:59.184 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:52:59.184 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:52:59.184 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138844355615832. ----------
17-03-18 04:52:59.184 -07 000000610 INF: Cycle	130	Tile	3	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:52:59.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28871, sync = True, waitForSettling = True)
17-03-18 04:52:59.194 -07 000000610 INF: Z Motor: Moving to -0.132163 mm, started at -0.138844 mm, distance = 6.68 um
17-03-18 04:52:59.194 -07 000000610 INF: FPGA: Xmit ZDACW 28871\n [Z Motor]
17-03-18 04:52:59.194 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:52:59.204 -07 000000610 INF: FPGA: 'ZDACW 28871' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:52:59.204 -07 000000461 INF: FPGA: Recv ZDACR 28871
17-03-18 04:52:59.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:52:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.364 -07 000000382 INF: FPGA: Recv ZSGSRD 29867
17-03-18 04:52:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:52:59.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.374 -07 000000480 INF: FPGA: Recv ZSGSRD 29865
17-03-18 04:52:59.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.384 -07 000000625 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:52:59.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.394 -07 000000581 INF: FPGA: Recv ZSGSRD 29863
17-03-18 04:52:59.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.404 -07 000000447 INF: FPGA: Recv ZSGSRD 29871
17-03-18 04:52:59.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.414 -07 000000461 INF: FPGA: Recv ZSGSRD 29858
17-03-18 04:52:59.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:52:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.434 -07 000000606 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:52:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.444 -07 000000474 INF: FPGA: Recv ZSGSRD 29861
17-03-18 04:52:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:52:59.454 -07 000000479 INF: FPGA: Recv ZSGSRD 29867
17-03-18 04:52:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:52:59.464 -07 000000461 INF: FPGA: Recv ZPIEZORD 25284
17-03-18 04:52:59.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:52:59.474 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -10.0 V.
17-03-18 04:52:59.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29864 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29862 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29858 (-131.4 uncal um), Max = 29871 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:52:59.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29864, posNoise = 7, negNoise = 6
17-03-18 04:52:59.474 -07 000000610 INF: Z Motor: After move to -0.132163, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:52:59.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:52:59.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:52:59.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:52:59.474 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:52:59.474 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:52:59.474 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:52:59.474 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:52:59.474 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:52:59.474 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:52:59.474 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:52:59.474 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:52:59.474 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:52:59.474 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:52:59.474 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:52:59.474 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:52:59.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:52:59.484 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:52:59.494 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:52:59.494 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:52:59.494 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:52:59.494 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:52:59.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29047 150\n [Camera]
17-03-18 04:52:59.694 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:00.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:00.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:00.124 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:00.124 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:00.124 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:53:00.124 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:00.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:00.124 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:00.124 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:00.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:53:00.314 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29047 813
17-03-18 04:53:00.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:00.514 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:53:00.514 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:53:00.514 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:00.524 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:53:00.524 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:53:00.524 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:00.524 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:00.524 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:53:00.524 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:00.534 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:53:00.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:00.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:00.674 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:00.674 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:00.674 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:53:00.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:00.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:00.674 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:00.674 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:00.674 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:53:00.864 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:53:00.864 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:00.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29047 150' command took 2 ms to send, 1367 ms to get response, and 1371 ms overall
17-03-18 04:53:00.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:00.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132176023412684. ------
17-03-18 04:53:00.874 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:00.874 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13854 mm
17-03-18 04:53:00.874 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:00.874 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:53:00.874 -07 000000455 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:53:00.874 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30263, sync = True, waitForSettling = False)
17-03-18 04:53:00.874 -07 000000626 INF: Z Motor: Moving to -0.138535 mm, started at -0.132176 mm, distance = -6.36 um
17-03-18 04:53:00.874 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:00.884 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:00.894 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:00.894 -07 000000606 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:53:00.904 -07 000000626 INF: FPGA: Xmit ZDACW 30263\n [Z Motor]
17-03-18 04:53:00.904 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:53:00.904 -07 000000455 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:00.904 -07 000000455 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:00.904 -07 000000455 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:53:00.904 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:53:00.914 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:00.914 -07 000000626 INF: FPGA: 'ZDACW 30263' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 04:53:00.924 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:00.934 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:00.934 -07 000000606 INF: FPGA: Recv ZDACR 30263
17-03-18 04:53:00.944 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:00.944 -07 000000626 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 04:53:01.064 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:53:01.064 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:53:01.064 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:01.074 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:53:01.074 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:53:01.074 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:01.074 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:01.074 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:53:01.074 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:53:01.074 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:53:01.114 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:01.114 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:53:01.304 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:53:01.304 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 04:53:01.344 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:01.354 -07 000000479 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:53:01.354 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:53:01.354 -07 000000455 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:01.354 -07 000000455 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:53:01.354 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.106 mm/sec
17-03-18 04:53:01.524 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.001704,
17-03-18 04:53:01.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:01.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:02.304 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:02.304 -07 000000479 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:53:02.314 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:02.314 -07 000000455 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:02.344 -07 000000455 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:02.344 -07 000000455 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:02.344 -07 000000455 INF: Y Motor: Moved to 62.3945 after 1466 ms (table move)
17-03-18 04:53:02.344 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138535 mm (DAC = 30263)
17-03-18 04:53:02.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.354 -07 000000608 INF: FPGA: Recv ZSGSRD 30854
17-03-18 04:53:02.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 7 ms overall
17-03-18 04:53:02.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.354 -07 000000467 INF: FPGA: Recv ZSGSRD 30855
17-03-18 04:53:02.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:02.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.364 -07 000000502 INF: FPGA: Recv ZSGSRD 30849
17-03-18 04:53:02.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.374 -07 000000606 INF: FPGA: Recv ZSGSRD 30859
17-03-18 04:53:02.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.384 -07 000000447 INF: FPGA: Recv ZSGSRD 30860
17-03-18 04:53:02.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.394 -07 000000608 INF: FPGA: Recv ZSGSRD 30854
17-03-18 04:53:02.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30857
17-03-18 04:53:02.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.414 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.414 -07 000000382 INF: FPGA: Recv ZSGSRD 30855
17-03-18 04:53:02.424 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.424 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.424 -07 000000579 INF: FPGA: Recv ZSGSRD 30853
17-03-18 04:53:02.434 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:02.434 -07 000000618 INF: FPGA: Recv ZSGSRD 30847
17-03-18 04:53:02.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.444 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:02.444 -07 000000608 INF: FPGA: Recv ZPIEZORD 26609
17-03-18 04:53:02.454 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:02.454 -07 000000501 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.3 V.
17-03-18 04:53:02.454 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30854 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30847 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:53:02.454 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30854, posNoise = 6, negNoise = 7
17-03-18 04:53:02.454 -07 000000501 INF: Z Motor: After move to -0.138535, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:02.454 -07 000000501 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms
17-03-18 04:53:02.454 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:02.504 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 04:53:02.504 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:02.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:02.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:02.504 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:02.504 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:02.504 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:02.504 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:02.504 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:53:02.504 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:02.514 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:02.514 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:02.524 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:53:02.524 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:53:02.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:02.574 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:02.864 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:02.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:02.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:02.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 04:53:02.914 -07 000000618 INF: FPGA: Recv @CAMSNAP 382
17-03-18 04:53:02.914 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:02.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 04:53:02.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:53:02.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:02.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:53:02.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:53:03.014 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:03.014 -07 000000474 INF: Autofocus start
17-03-18 04:53:03.014 -07 000000474 INF: MeasureProfile start
17-03-18 04:53:03.014 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:03.024 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:03.024 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:03.024 -07 000000474 INF: MeasureProfile done
17-03-18 04:53:03.024 -07 000000474 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 04:53:03.024 -07 000000474 INF: Autofocus finished
17-03-18 04:53:03.224 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:03.224 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:03.224 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138535993433028. ----------
17-03-18 04:53:03.234 -07 000000610 INF: Cycle	130	Tile	4	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:03.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28741, sync = True, waitForSettling = True)
17-03-18 04:53:03.234 -07 000000610 INF: Z Motor: Moving to -0.131568 mm, started at -0.138536 mm, distance = 6.97 um
17-03-18 04:53:03.234 -07 000000610 INF: FPGA: Xmit ZDACW 28741\n [Z Motor]
17-03-18 04:53:03.234 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:53:03.244 -07 000000610 INF: FPGA: 'ZDACW 28741' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:03.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:03.244 -07 000000569 INF: FPGA: Recv ZDACR 28741
17-03-18 04:53:03.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.404 -07 000000479 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:53:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.414 -07 000000461 INF: FPGA: Recv ZSGSRD 29766
17-03-18 04:53:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.424 -07 000000474 INF: FPGA: Recv ZSGSRD 29766
17-03-18 04:53:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29769
17-03-18 04:53:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.444 -07 000000455 INF: FPGA: Recv ZSGSRD 29770
17-03-18 04:53:03.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.454 -07 000000502 INF: FPGA: Recv ZSGSRD 29770
17-03-18 04:53:03.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.464 -07 000000382 INF: FPGA: Recv ZSGSRD 29767
17-03-18 04:53:03.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29775
17-03-18 04:53:03.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.484 -07 000000581 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:53:03.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:03.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29764
17-03-18 04:53:03.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:03.504 -07 000000479 INF: FPGA: Recv ZPIEZORD 25189
17-03-18 04:53:03.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:03.514 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -10.0 V.
17-03-18 04:53:03.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29769 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29770 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29764 (-130.8 uncal um), Max = 29775 (-130.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:53:03.514 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29769, posNoise = 6, negNoise = 5
17-03-18 04:53:03.514 -07 000000610 INF: Z Motor: After move to -0.131568, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:03.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:53:03.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:03.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:03.514 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:03.514 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:03.514 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:03.514 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:03.514 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:03.514 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:03.514 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:03.514 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:03.514 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:03.514 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:03.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:03.524 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:03.524 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:03.524 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:03.524 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:53:03.534 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:03.534 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:53:03.534 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:03.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28918 150\n [Camera]
17-03-18 04:53:03.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:04.164 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:04.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:04.164 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:04.164 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:04.164 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:53:04.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:04.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:04.164 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:04.164 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:04.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:53:04.354 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28918 813
17-03-18 04:53:04.504 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:04.544 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:53:04.544 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:53:04.544 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:04.544 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:04.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:53:04.544 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:53:04.544 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:04.554 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:04.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:53:04.554 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:53:04.714 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-18 04:53:04.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-18 04:53:04.714 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:04.714 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:04.714 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:53:04.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-18 04:53:04.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-18 04:53:04.714 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:04.714 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:04.714 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:53:04.904 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:04.904 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:04.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28918 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:53:04.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:04.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131565723259217. ------
17-03-18 04:53:04.904 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:04.914 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13824 mm
17-03-18 04:53:04.914 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:04.914 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:04.914 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30198, sync = True, waitForSettling = False)
17-03-18 04:53:04.914 -07 000000467 INF: Z Motor: Moving to -0.138238 mm, started at -0.131566 mm, distance = -6.67 um
17-03-18 04:53:04.914 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:53:04.914 -07 000000625 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:53:04.924 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:04.924 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:04.924 -07 000000424 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:53:04.934 -07 000000467 INF: FPGA: Xmit ZDACW 30198\n [Z Motor]
17-03-18 04:53:04.934 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:53:04.934 -07 000000625 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:04.934 -07 000000625 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:04.934 -07 000000625 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:53:04.934 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:53:04.944 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:04.944 -07 000000467 INF: FPGA: 'ZDACW 30198' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:53:04.954 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:04.964 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:04.964 -07 000000579 INF: FPGA: Recv ZDACR 30198
17-03-18 04:53:04.974 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:04.974 -07 000000467 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:53:05.104 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:53:05.104 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:53:05.104 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:05.104 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:53:05.104 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:53:05.104 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:05.114 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:05.114 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:53:05.114 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:53:05.114 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:53:05.144 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:05.144 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:53:05.324 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:53:05.324 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:53:05.374 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:05.384 -07 000000447 INF: FPGA: Recv YRDPOS 129479
17-03-18 04:53:05.384 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:05.384 -07 000000625 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:05.384 -07 000000625 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:53:05.384 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 04:53:06.334 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:06.334 -07 000000467 INF: FPGA: Recv YRDPOS 129479
17-03-18 04:53:06.344 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.344 -07 000000625 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:06.374 -07 000000625 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:06.374 -07 000000625 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:06.374 -07 000000625 INF: Y Motor: Moved to 63.2222 after 1454 ms (table move)
17-03-18 04:53:06.374 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138238 mm (DAC = 30198)
17-03-18 04:53:06.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.374 -07 000000479 INF: FPGA: Recv ZSGSRD 30810
17-03-18 04:53:06.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:06.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.384 -07 000000501 INF: FPGA: Recv ZSGSRD 30817
17-03-18 04:53:06.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.394 -07 000000625 INF: FPGA: Recv ZSGSRD 30820
17-03-18 04:53:06.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.404 -07 000000606 INF: FPGA: Recv ZSGSRD 30804
17-03-18 04:53:06.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.414 -07 000000501 INF: FPGA: Recv ZSGSRD 30805
17-03-18 04:53:06.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.424 -07 000000625 INF: FPGA: Recv ZSGSRD 30810
17-03-18 04:53:06.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.434 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.434 -07 000000608 INF: FPGA: Recv ZSGSRD 30804
17-03-18 04:53:06.444 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.444 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.444 -07 000000424 INF: FPGA: Recv ZSGSRD 30800
17-03-18 04:53:06.454 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.454 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.454 -07 000000382 INF: FPGA: Recv ZSGSRD 30806
17-03-18 04:53:06.464 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.464 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:06.464 -07 000000461 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:53:06.474 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.474 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:06.474 -07 000000625 INF: FPGA: Recv ZPIEZORD 26580
17-03-18 04:53:06.484 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:06.484 -07 000000618 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -9.3 V.
17-03-18 04:53:06.484 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30810 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30808 (-137.4 uncal um), StdDev = 8 (0.1 uncal um), Range = 23 (0.1 uncal um), Min = 30800 (-137.4 uncal um), Max = 30823 (-137.5 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:53:06.484 -07 000000618 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30810, posNoise = 13, negNoise = 10
17-03-18 04:53:06.484 -07 000000618 INF: Z Motor: After move to -0.138238, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:06.484 -07 000000618 INF: Z Motor: Settle wait time = 1460 ms, measure time = 103 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:53:06.484 -07 000000618 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:06.534 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:53:06.534 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:06.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:06.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:06.544 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:06.544 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:06.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:06.544 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:06.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:06.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:06.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:06.544 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:06.554 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:06.554 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:53:06.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:06.594 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:06.714 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:06.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:06.894 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.018051,
17-03-18 04:53:06.894 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:06.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:06.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:06.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 04:53:06.934 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:06.934 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:06.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:53:07.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:53:07.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:07.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:53:07.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:53:07.034 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:07.034 -07 000000480 INF: Autofocus start
17-03-18 04:53:07.034 -07 000000480 INF: MeasureProfile start
17-03-18 04:53:07.034 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:07.044 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:07.044 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:07.044 -07 000000480 INF: MeasureProfile done
17-03-18 04:53:07.044 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:53:07.044 -07 000000480 INF: Autofocus finished
17-03-18 04:53:07.244 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:07.244 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:53:07.244 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.13825332809879. ----------
17-03-18 04:53:07.254 -07 000000610 INF: Cycle	130	Tile	5	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:07.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28705, sync = True, waitForSettling = True)
17-03-18 04:53:07.254 -07 000000610 INF: Z Motor: Moving to -0.131403 mm, started at -0.138253 mm, distance = 6.85 um
17-03-18 04:53:07.254 -07 000000610 INF: FPGA: Xmit ZDACW 28705\n [Z Motor]
17-03-18 04:53:07.254 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:53:07.264 -07 000000610 INF: FPGA: 'ZDACW 28705' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:07.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:07.264 -07 000000447 INF: FPGA: Recv ZDACR 28705
17-03-18 04:53:07.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:07.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.424 -07 000000461 INF: FPGA: Recv ZSGSRD 29745
17-03-18 04:53:07.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:07.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.434 -07 000000480 INF: FPGA: Recv ZSGSRD 29748
17-03-18 04:53:07.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.444 -07 000000467 INF: FPGA: Recv ZSGSRD 29737
17-03-18 04:53:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.454 -07 000000579 INF: FPGA: Recv ZSGSRD 29744
17-03-18 04:53:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.464 -07 000000447 INF: FPGA: Recv ZSGSRD 29749
17-03-18 04:53:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.474 -07 000000625 INF: FPGA: Recv ZSGSRD 29739
17-03-18 04:53:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29745
17-03-18 04:53:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29743
17-03-18 04:53:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.504 -07 000000606 INF: FPGA: Recv ZSGSRD 29744
17-03-18 04:53:07.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:07.514 -07 000000502 INF: FPGA: Recv ZSGSRD 29745
17-03-18 04:53:07.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:07.524 -07 000000461 INF: FPGA: Recv ZPIEZORD 25169
17-03-18 04:53:07.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:07.534 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -10.0 V.
17-03-18 04:53:07.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29744 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29744 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29737 (-130.6 uncal um), Max = 29749 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:53:07.534 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29744, posNoise = 5, negNoise = 7
17-03-18 04:53:07.534 -07 000000610 INF: Z Motor: After move to -0.131403, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:07.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:53:07.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:07.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:07.534 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:07.534 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:07.534 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:07.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:07.534 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:07.534 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:07.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:07.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:07.534 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:07.534 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:07.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:07.544 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:07.544 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:07.544 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:07.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:53:07.554 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:53:07.554 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:53:07.554 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:53:07.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28882 150\n [Camera]
17-03-18 04:53:07.754 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:08.184 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:08.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:08.184 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:08.184 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:08.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 04:53:08.194 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:08.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:08.194 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:08.194 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:08.194 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:53:08.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28882 813
17-03-18 04:53:08.524 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:08.574 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:53:08.574 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:53:08.574 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:08.574 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:53:08.574 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:53:08.574 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:08.574 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:08.574 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:08.574 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:53:08.584 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:53:08.734 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:08.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:08.734 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:08.734 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:08.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:53:08.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:08.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:08.744 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:08.744 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:08.744 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:53:08.924 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:08.924 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:08.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28882 150' command took 2 ms to send, 1358 ms to get response, and 1369 ms overall
17-03-18 04:53:08.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:08.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.131405117955673. ------
17-03-18 04:53:08.934 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13773 mm
17-03-18 04:53:08.934 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:08.934 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:08.934 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:53:08.934 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 04:53:08.934 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30086, sync = True, waitForSettling = False)
17-03-18 04:53:08.934 -07 000000569 INF: Z Motor: Moving to -0.137725 mm, started at -0.131405 mm, distance = -6.32 um
17-03-18 04:53:08.944 -07 000000569 INF: FPGA: Xmit ZDACW 30086\n [Z Motor]
17-03-18 04:53:08.944 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:08.944 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:08.944 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:53:08.954 -07 000000569 INF: FPGA: 'ZDACW 30086' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:08.954 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:08.954 -07 000000606 INF: FPGA: Recv ZDACR 30086
17-03-18 04:53:08.964 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:08.964 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:08.964 -07 000000569 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 04:53:08.964 -07 000000382 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:53:08.974 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:53:08.974 -07 000000618 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:08.974 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:08.974 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:08.974 -07 000000618 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:53:08.984 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:09.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:53:09.144 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:53:09.144 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:09.144 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:53:09.144 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:53:09.144 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:09.144 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:09.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:53:09.144 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:53:09.154 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:53:09.174 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:09.174 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 04:53:09.354 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:53:09.354 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:53:09.404 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:09.414 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:53:09.414 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 04:53:09.414 -07 000000618 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:09.414 -07 000000618 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:53:09.414 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.189 mm/sec
17-03-18 04:53:10.364 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:10.364 -07 000000608 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:53:10.374 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:10.374 -07 000000618 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:10.404 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:10.404 -07 000000618 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:10.404 -07 000000618 INF: Y Motor: Moved to 64.0557 after 1461 ms (table move)
17-03-18 04:53:10.404 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137725 mm (DAC = 30086)
17-03-18 04:53:10.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.404 -07 000000579 INF: FPGA: Recv ZSGSRD 30730
17-03-18 04:53:10.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:10.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.414 -07 000000606 INF: FPGA: Recv ZSGSRD 30734
17-03-18 04:53:10.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.424 -07 000000467 INF: FPGA: Recv ZSGSRD 30721
17-03-18 04:53:10.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.434 -07 000000502 INF: FPGA: Recv ZSGSRD 30728
17-03-18 04:53:10.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.444 -07 000000581 INF: FPGA: Recv ZSGSRD 30722
17-03-18 04:53:10.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.454 -07 000000569 INF: FPGA: Recv ZSGSRD 30730
17-03-18 04:53:10.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30732
17-03-18 04:53:10.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.474 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.474 -07 000000618 INF: FPGA: Recv ZSGSRD 30730
17-03-18 04:53:10.484 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.484 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30732
17-03-18 04:53:10.494 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.494 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:10.494 -07 000000581 INF: FPGA: Recv ZSGSRD 30728
17-03-18 04:53:10.504 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.504 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:10.504 -07 000000579 INF: FPGA: Recv ZPIEZORD 26478
17-03-18 04:53:10.514 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:10.514 -07 000000474 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.3 V.
17-03-18 04:53:10.514 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30729 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30730 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30734 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:53:10.514 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30729, posNoise = 5, negNoise = 8
17-03-18 04:53:10.514 -07 000000474 INF: Z Motor: After move to -0.137725, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:10.514 -07 000000474 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 04:53:10.514 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:10.564 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:53:10.564 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:10.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:10.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:10.564 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:10.564 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:10.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:10.564 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:10.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:53:10.564 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:10.574 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:10.574 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:10.574 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:10.574 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:53:10.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:10.624 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:10.924 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:10.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:10.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:10.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-18 04:53:10.964 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:10.964 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:10.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:53:11.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:53:11.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:11.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:53:11.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:53:11.064 -07 000000581 INF: Autofocus start
17-03-18 04:53:11.064 -07 000000581 INF: MeasureProfile start
17-03-18 04:53:11.064 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:11.064 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:11.074 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:11.074 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:11.074 -07 000000581 INF: MeasureProfile done
17-03-18 04:53:11.074 -07 000000581 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:53:11.074 -07 000000581 INF: Autofocus finished
17-03-18 04:53:11.274 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:11.274 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:11.274 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.137732966915307. ----------
17-03-18 04:53:11.274 -07 000000610 INF: Cycle	130	Tile	6	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:11.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28581, sync = True, waitForSettling = True)
17-03-18 04:53:11.284 -07 000000610 INF: Z Motor: Moving to -0.130835 mm, started at -0.137733 mm, distance = 6.90 um
17-03-18 04:53:11.284 -07 000000610 INF: FPGA: Xmit ZDACW 28581\n [Z Motor]
17-03-18 04:53:11.284 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:53:11.294 -07 000000610 INF: FPGA: 'ZDACW 28581' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:11.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:11.294 -07 000000424 INF: FPGA: Recv ZDACR 28581
17-03-18 04:53:11.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:11.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.454 -07 000000625 INF: FPGA: Recv ZSGSRD 29646
17-03-18 04:53:11.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:11.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.464 -07 000000512 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:53:11.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.474 -07 000000625 INF: FPGA: Recv ZSGSRD 29655
17-03-18 04:53:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:53:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.494 -07 000000424 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:53:11.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.504 -07 000000447 INF: FPGA: Recv ZSGSRD 29659
17-03-18 04:53:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.514 -07 000000512 INF: FPGA: Recv ZSGSRD 29653
17-03-18 04:53:11.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.524 -07 000000579 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:53:11.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.534 -07 000000581 INF: FPGA: Recv ZSGSRD 29653
17-03-18 04:53:11.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:11.544 -07 000000608 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:53:11.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:11.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:11.554 -07 000000467 INF: FPGA: Recv ZPIEZORD 25059
17-03-18 04:53:11.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:11.564 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -10.1 V.
17-03-18 04:53:11.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29655 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29656 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29646 (-130.0 uncal um), Max = 29661 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:53:11.564 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29655, posNoise = 6, negNoise = 9
17-03-18 04:53:11.564 -07 000000610 INF: Z Motor: After move to -0.130835, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:11.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:53:11.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:11.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:11.564 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:11.564 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:11.564 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:11.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:11.564 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:11.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:11.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:53:11.564 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:11.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:11.564 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:11.564 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:53:11.564 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:11.574 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:11.574 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:11.574 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:11.574 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:11.584 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:53:11.584 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:11.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28758 150\n [Camera]
17-03-18 04:53:11.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:11.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:11.784 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:12.214 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:12.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:12.214 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:12.214 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:12.214 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:53:12.214 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:12.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:12.214 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:12.214 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:12.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:53:12.274 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.038479,
17-03-18 04:53:12.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28758 813
17-03-18 04:53:12.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:12.604 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:53:12.604 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:53:12.604 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:12.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:53:12.614 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:53:12.614 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:12.614 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:12.614 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:53:12.614 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:12.624 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:53:12.754 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:12.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:12.754 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:12.894 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:12.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:12.904 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:12.904 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:12.904 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:53:12.904 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:12.904 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:53:12.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:53:12.954 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:12.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28758 150' command took 2 ms to send, 1360 ms to get response, and 1368 ms overall
17-03-18 04:53:12.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:12.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.130833363075056. ------
17-03-18 04:53:12.954 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:12.954 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13746 mm
17-03-18 04:53:12.954 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:12.964 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:53:12.964 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:53:12.964 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:12.964 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:12.964 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:12.964 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30029, sync = True, waitForSettling = False)
17-03-18 04:53:12.964 -07 000000501 INF: Z Motor: Moving to -0.137464 mm, started at -0.130833 mm, distance = -6.63 um
17-03-18 04:53:12.974 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:12.974 -07 000000626 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:53:12.984 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:12.984 -07 000000512 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:12.984 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:12.984 -07 000000512 INF: Y Motor: Moving 1339 steps-14
17-03-18 04:53:12.984 -07 000000501 INF: FPGA: Xmit ZDACW 30029\n [Z Motor]
17-03-18 04:53:12.984 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:53:12.994 -07 000000501 INF: FPGA: 'ZDACW 30029' command took 3 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:53:12.994 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:13.004 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:13.004 -07 000000579 INF: FPGA: Recv ZDACR 30029
17-03-18 04:53:13.014 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:13.014 -07 000000501 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:53:13.164 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:13.164 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:13.294 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:53:13.294 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:53:13.294 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:13.294 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:13.294 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:53:13.294 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:53:13.294 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:13.304 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:13.304 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-18 04:53:13.304 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:53:13.364 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:53:13.364 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:53:13.414 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:13.424 -07 000000447 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:53:13.424 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:13.424 -07 000000512 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:13.424 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:53:13.424 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-18 04:53:14.374 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:14.374 -07 000000608 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:53:14.384 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.384 -07 000000512 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:14.414 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:14.414 -07 000000512 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:14.414 -07 000000512 INF: Y Motor: Moved to 64.8774 after 1450 ms (table move)
17-03-18 04:53:14.414 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137464 mm (DAC = 30029)
17-03-18 04:53:14.414 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.414 -07 000000467 INF: FPGA: Recv ZSGSRD 30697
17-03-18 04:53:14.424 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:14.424 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.424 -07 000000618 INF: FPGA: Recv ZSGSRD 30688
17-03-18 04:53:14.434 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.434 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30690
17-03-18 04:53:14.444 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.444 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.444 -07 000000467 INF: FPGA: Recv ZSGSRD 30687
17-03-18 04:53:14.454 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.454 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.454 -07 000000608 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:53:14.464 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.464 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.464 -07 000000626 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:53:14.474 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.474 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.474 -07 000000474 INF: FPGA: Recv ZSGSRD 30689
17-03-18 04:53:14.484 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.484 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.484 -07 000000455 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:53:14.494 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.494 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.494 -07 000000512 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:53:14.504 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.504 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:14.504 -07 000000581 INF: FPGA: Recv ZSGSRD 30692
17-03-18 04:53:14.514 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.514 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:14.514 -07 000000606 INF: FPGA: Recv ZPIEZORD 26425
17-03-18 04:53:14.524 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:14.524 -07 000000479 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.4 V.
17-03-18 04:53:14.524 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30688 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30685 (-136.7 uncal um), Max = 30697 (-136.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:53:14.524 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30688, posNoise = 9, negNoise = 3
17-03-18 04:53:14.524 -07 000000479 INF: Z Motor: After move to -0.137464, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:14.524 -07 000000479 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:53:14.524 -07 000000479 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:14.574 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:53:14.574 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:14.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:14.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:14.574 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:14.574 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:14.574 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:14.574 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:14.574 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:14.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:14.584 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:14.584 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:14.584 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:14.584 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:53:14.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:14.634 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:14.934 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:14.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:14.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:14.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 04:53:14.974 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:14.974 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:14.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 04:53:15.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:53:15.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:15.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:15.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:53:15.074 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:15.074 -07 000000480 INF: Autofocus start
17-03-18 04:53:15.074 -07 000000480 INF: MeasureProfile start
17-03-18 04:53:15.074 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:15.084 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:15.084 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:15.094 -07 000000480 INF: MeasureProfile done
17-03-18 04:53:15.094 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:53:15.094 -07 000000480 INF: Autofocus finished
17-03-18 04:53:15.284 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:15.284 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:15.284 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137469574217495. ----------
17-03-18 04:53:15.294 -07 000000610 INF: Cycle	130	Tile	7	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:15.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28524, sync = True, waitForSettling = True)
17-03-18 04:53:15.294 -07 000000610 INF: Z Motor: Moving to -0.130575 mm, started at -0.137470 mm, distance = 6.90 um
17-03-18 04:53:15.294 -07 000000610 INF: FPGA: Xmit ZDACW 28524\n [Z Motor]
17-03-18 04:53:15.294 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:53:15.304 -07 000000610 INF: FPGA: 'ZDACW 28524' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:15.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:15.304 -07 000000502 INF: FPGA: Recv ZDACR 28524
17-03-18 04:53:15.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:15.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.464 -07 000000447 INF: FPGA: Recv ZSGSRD 29612
17-03-18 04:53:15.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:15.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.474 -07 000000382 INF: FPGA: Recv ZSGSRD 29621
17-03-18 04:53:15.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.484 -07 000000569 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:53:15.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.494 -07 000000581 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:53:15.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.504 -07 000000424 INF: FPGA: Recv ZSGSRD 29619
17-03-18 04:53:15.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.514 -07 000000626 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:53:15.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.524 -07 000000480 INF: FPGA: Recv ZSGSRD 29622
17-03-18 04:53:15.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:53:15.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.544 -07 000000625 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:53:15.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:15.554 -07 000000474 INF: FPGA: Recv ZSGSRD 29615
17-03-18 04:53:15.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:15.564 -07 000000424 INF: FPGA: Recv ZPIEZORD 25046
17-03-18 04:53:15.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:15.574 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -10.0 V.
17-03-18 04:53:15.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29618 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29618 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29612 (-129.8 uncal um), Max = 29622 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:53:15.574 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29618, posNoise = 4, negNoise = 6
17-03-18 04:53:15.574 -07 000000610 INF: Z Motor: After move to -0.130575, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:15.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:53:15.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:15.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:15.574 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:15.574 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:15.574 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:15.574 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:15.574 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:15.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:15.574 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:15.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:15.584 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:15.584 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:15.584 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:15.584 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:15.584 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:15.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:15.594 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:53:15.594 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:15.594 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:15.594 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:15.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28700 150\n [Camera]
17-03-18 04:53:15.794 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:16.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:16.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:16.224 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:16.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:16.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:16.224 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:16.234 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:16.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:53:16.234 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:16.234 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:53:16.414 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28700 814
17-03-18 04:53:16.564 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:16.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:53:16.604 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:53:16.604 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:16.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:53:16.604 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:53:16.604 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:16.614 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:16.614 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:16.614 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:53:16.624 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:53:16.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:16.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:16.774 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:16.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:16.774 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:16.774 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:16.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:16.774 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:16.894 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:16.894 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:53:16.894 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:16.894 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:53:16.964 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:53:16.964 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:16.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28700 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:53:16.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:16.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130595667225811. ------
17-03-18 04:53:16.964 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:16.964 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13723 mm
17-03-18 04:53:16.964 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:16.974 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:53:16.974 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 04:53:16.974 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:16.974 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:16.974 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:53:16.974 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29978, sync = True, waitForSettling = False)
17-03-18 04:53:16.974 -07 000000579 INF: Z Motor: Moving to -0.137230 mm, started at -0.130596 mm, distance = -6.63 um
17-03-18 04:53:16.974 -07 000000608 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:53:16.984 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:16.984 -07 000000424 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:16.984 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:16.984 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:16.984 -07 000000424 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:53:16.994 -07 000000579 INF: FPGA: Xmit ZDACW 29978\n [Z Motor]
17-03-18 04:53:16.994 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:53:17.004 -07 000000579 INF: FPGA: 'ZDACW 29978' command took 3 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:53:17.004 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:17.024 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:17.024 -07 000000382 INF: FPGA: Recv ZDACR 29978
17-03-18 04:53:17.034 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:17.034 -07 000000579 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 04:53:17.184 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:17.184 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:53:17.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:53:17.294 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:53:17.294 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:53:17.294 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:53:17.294 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:17.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:17.304 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:17.304 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 04:53:17.304 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:53:17.304 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 04:53:17.374 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:53:17.374 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:53:17.424 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:17.434 -07 000000579 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:53:17.434 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:17.434 -07 000000424 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:17.434 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:53:17.434 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 04:53:17.644 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.024884,
17-03-18 04:53:18.384 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:18.384 -07 000000606 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:53:18.394 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:18.394 -07 000000424 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:18.424 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:18.424 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:18.424 -07 000000424 INF: Y Motor: Moved to 65.7129 after 1457 ms (table move)
17-03-18 04:53:18.434 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137230 mm (DAC = 29978)
17-03-18 04:53:18.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.434 -07 000000618 INF: FPGA: Recv ZSGSRD 30652
17-03-18 04:53:18.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:18.444 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.444 -07 000000581 INF: FPGA: Recv ZSGSRD 30648
17-03-18 04:53:18.454 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.454 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.454 -07 000000474 INF: FPGA: Recv ZSGSRD 30643
17-03-18 04:53:18.464 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30645
17-03-18 04:53:18.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.474 -07 000000424 INF: FPGA: Recv ZSGSRD 30656
17-03-18 04:53:18.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.484 -07 000000618 INF: FPGA: Recv ZSGSRD 30655
17-03-18 04:53:18.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.494 -07 000000480 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:53:18.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.504 -07 000000467 INF: FPGA: Recv ZSGSRD 30664
17-03-18 04:53:18.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.514 -07 000000455 INF: FPGA: Recv ZSGSRD 30646
17-03-18 04:53:18.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:18.524 -07 000000447 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:53:18.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.534 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:18.534 -07 000000579 INF: FPGA: Recv ZPIEZORD 26407
17-03-18 04:53:18.544 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:18.544 -07 000000501 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.3 V.
17-03-18 04:53:18.544 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30651 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30650 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30643 (-136.4 uncal um), Max = 30664 (-136.5 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:53:18.544 -07 000000501 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30651, posNoise = 13, negNoise = 8
17-03-18 04:53:18.544 -07 000000501 INF: Z Motor: After move to -0.137230, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:18.544 -07 000000501 INF: Z Motor: Settle wait time = 1458 ms, measure time = 111 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:53:18.544 -07 000000501 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:18.584 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:53:18.584 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:18.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:18.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:18.584 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:18.584 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:18.584 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:18.584 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:18.584 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:18.584 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:18.594 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:18.594 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:18.604 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:53:18.604 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:53:18.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:18.654 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:18.954 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:18.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:18.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:18.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 04:53:18.994 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:18.994 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:18.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:53:19.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:53:19.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:19.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:19.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:53:19.094 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:19.094 -07 000000569 INF: Autofocus start
17-03-18 04:53:19.094 -07 000000569 INF: MeasureProfile start
17-03-18 04:53:19.094 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:19.104 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:19.104 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:19.104 -07 000000569 INF: MeasureProfile done
17-03-18 04:53:19.104 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:53:19.104 -07 000000569 INF: Autofocus finished
17-03-18 04:53:19.304 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:19.304 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:53:19.314 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.13723187836825. ----------
17-03-18 04:53:19.314 -07 000000610 INF: Cycle	130	Tile	8	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:19.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28485, sync = True, waitForSettling = True)
17-03-18 04:53:19.314 -07 000000610 INF: Z Motor: Moving to -0.130396 mm, started at -0.137232 mm, distance = 6.84 um
17-03-18 04:53:19.314 -07 000000610 INF: FPGA: Xmit ZDACW 28485\n [Z Motor]
17-03-18 04:53:19.314 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:53:19.324 -07 000000610 INF: FPGA: 'ZDACW 28485' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:19.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:19.324 -07 000000447 INF: FPGA: Recv ZDACR 28485
17-03-18 04:53:19.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29581
17-03-18 04:53:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.494 -07 000000569 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:53:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.504 -07 000000608 INF: FPGA: Recv ZSGSRD 29591
17-03-18 04:53:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.514 -07 000000625 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:53:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.524 -07 000000480 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:53:19.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.534 -07 000000455 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:53:19.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.544 -07 000000581 INF: FPGA: Recv ZSGSRD 29589
17-03-18 04:53:19.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.554 -07 000000608 INF: FPGA: Recv ZSGSRD 29591
17-03-18 04:53:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.564 -07 000000474 INF: FPGA: Recv ZSGSRD 29582
17-03-18 04:53:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:19.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29588
17-03-18 04:53:19.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:19.584 -07 000000502 INF: FPGA: Recv ZPIEZORD 25014
17-03-18 04:53:19.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:19.594 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -10.0 V.
17-03-18 04:53:19.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29589 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29581 (-129.6 uncal um), Max = 29593 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:53:19.594 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29589, posNoise = 4, negNoise = 8
17-03-18 04:53:19.594 -07 000000610 INF: Z Motor: After move to -0.130396, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:19.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:53:19.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:19.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:19.594 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:19.594 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:19.594 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:19.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:19.594 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:19.594 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:19.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:19.594 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:53:19.594 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:19.594 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:19.604 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:53:19.604 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:19.604 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:53:19.604 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:19.614 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:53:19.614 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:19.614 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:53:19.614 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:19.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28662 150\n [Camera]
17-03-18 04:53:19.814 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:20.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:20.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:20.244 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:20.244 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:20.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:20.244 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:20.244 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:20.244 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:53:20.244 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:20.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:53:20.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28662 813
17-03-18 04:53:20.584 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:20.624 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:53:20.624 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:53:20.624 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:20.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:53:20.634 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:53:20.634 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:20.634 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:20.634 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:53:20.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:20.644 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:53:20.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:20.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:20.794 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:20.794 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:20.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:53:20.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:20.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:20.794 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:20.794 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:20.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2638694096, 0x0, 418435064) start.
17-03-18 04:53:20.984 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:20.984 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:20.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28662 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-18 04:53:20.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:20.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.1304093650737. ------
17-03-18 04:53:20.984 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:20.984 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13686 mm
17-03-18 04:53:20.984 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:20.994 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:20.994 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:53:20.994 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:53:20.994 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29897, sync = True, waitForSettling = False)
17-03-18 04:53:20.994 -07 000000467 INF: Z Motor: Moving to -0.136860 mm, started at -0.130409 mm, distance = -6.45 um
17-03-18 04:53:20.994 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:20.994 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:20.994 -07 000000581 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:53:21.004 -07 000000625 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:21.004 -07 000000625 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:21.004 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:21.004 -07 000000625 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:53:21.004 -07 000000467 INF: FPGA: Xmit ZDACW 29897\n [Z Motor]
17-03-18 04:53:21.004 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:53:21.014 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:21.014 -07 000000467 INF: FPGA: 'ZDACW 29897' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:21.024 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:21.034 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:21.034 -07 000000579 INF: FPGA: Recv ZDACR 29897
17-03-18 04:53:21.044 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:21.044 -07 000000467 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:53:21.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:53:21.184 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:53:21.184 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:21.194 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:53:21.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:53:21.214 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:21.214 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 04:53:21.314 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2638694096, 0x0, 418435064) end. Duration was 519 ms.
17-03-18 04:53:21.314 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 04:53:21.314 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:21.314 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:21.324 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 04:53:21.394 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:53:21.394 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:53:21.444 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:21.444 -07 000000467 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:53:21.454 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:21.454 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:21.454 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:53:21.454 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 04:53:21.714 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:22.404 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:22.404 -07 000000382 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:53:22.414 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:22.414 -07 000000625 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:22.444 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:22.444 -07 000000625 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:53:22.444 -07 000000625 INF: Y Motor: Moved to 66.5381 after 1452 ms (table move)
17-03-18 04:53:22.444 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136860 mm (DAC = 29897)
17-03-18 04:53:22.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.454 -07 000000467 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:53:22.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:53:22.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.454 -07 000000479 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:53:22.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.464 -07 000000424 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:53:22.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.474 -07 000000626 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:53:22.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.484 -07 000000447 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:53:22.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.494 -07 000000455 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:53:22.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.504 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.504 -07 000000474 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:53:22.514 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.514 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.514 -07 000000579 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:53:22.524 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.524 -07 000000461 INF: FPGA: Recv ZSGSRD 30595
17-03-18 04:53:22.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:22.534 -07 000000479 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:53:22.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.544 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:22.544 -07 000000501 INF: FPGA: Recv ZPIEZORD 26343
17-03-18 04:53:22.554 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:22.554 -07 000000512 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.3 V.
17-03-18 04:53:22.554 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30594 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30594 (-136.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30591 (-136.1 uncal um), Max = 30597 (-136.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:53:22.554 -07 000000512 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30594, posNoise = 3, negNoise = 3
17-03-18 04:53:22.554 -07 000000512 INF: Z Motor: After move to -0.136860, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:22.554 -07 000000512 INF: Z Motor: Settle wait time = 1457 ms, measure time = 102 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:53:22.554 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:22.604 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:53:22.604 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:22.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:22.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:22.604 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:22.604 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:22.604 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:22.604 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:22.604 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:22.604 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:22.614 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:22.614 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:22.624 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:53:22.624 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:53:22.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:22.674 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:22.974 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:22.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:22.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:22.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:23.014 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.014009,
17-03-18 04:53:23.014 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:23.014 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:23.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 04:53:23.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:53:23.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:23.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:23.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:53:23.114 -07 000000502 INF: Autofocus start
17-03-18 04:53:23.114 -07 000000502 INF: MeasureProfile start
17-03-18 04:53:23.114 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:23.114 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:23.124 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:23.124 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:23.124 -07 000000502 INF: MeasureProfile done
17-03-18 04:53:23.124 -07 000000502 INF: X=-9  Z correction [um]=-0.04721335
17-03-18 04:53:23.124 -07 000000502 INF: Autofocus finished
17-03-18 04:53:23.324 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:23.324 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:23.324 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.13686569827617. ----------
17-03-18 04:53:23.324 -07 000000610 INF: Cycle	130	Tile	9	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:23.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28400, sync = True, waitForSettling = True)
17-03-18 04:53:23.334 -07 000000610 INF: Z Motor: Moving to -0.130007 mm, started at -0.136866 mm, distance = 6.86 um
17-03-18 04:53:23.334 -07 000000610 INF: FPGA: Xmit ZDACW 28400\n [Z Motor]
17-03-18 04:53:23.334 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:53:23.344 -07 000000610 INF: FPGA: 'ZDACW 28400' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:23.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:23.344 -07 000000467 INF: FPGA: Recv ZDACR 28400
17-03-18 04:53:23.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:23.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.504 -07 000000625 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:53:23.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:23.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.514 -07 000000479 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:53:23.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.524 -07 000000447 INF: FPGA: Recv ZSGSRD 29520
17-03-18 04:53:23.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.534 -07 000000608 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:53:23.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.544 -07 000000467 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:53:23.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.554 -07 000000569 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:53:23.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.564 -07 000000512 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:53:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29534
17-03-18 04:53:23.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.584 -07 000000581 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:53:23.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:23.594 -07 000000382 INF: FPGA: Recv ZSGSRD 29526
17-03-18 04:53:23.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:23.604 -07 000000606 INF: FPGA: Recv ZPIEZORD 24972
17-03-18 04:53:23.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:23.614 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.0 V.
17-03-18 04:53:23.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29527 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29528 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29520 (-129.2 uncal um), Max = 29534 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:53:23.614 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29527, posNoise = 7, negNoise = 7
17-03-18 04:53:23.614 -07 000000610 INF: Z Motor: After move to -0.130007, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:23.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:53:23.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:23.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:23.614 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:23.614 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:23.614 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:23.614 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:23.614 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:23.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:23.614 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:53:23.614 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:23.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:23.614 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:23.624 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:23.624 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:23.624 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:23.624 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:23.624 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:53:23.624 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:53:23.634 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:23.634 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:23.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28576 150\n [Camera]
17-03-18 04:53:23.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:24.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:24.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:24.264 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:24.264 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:24.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:24.264 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:24.264 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:24.264 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:53:24.274 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:24.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:53:24.454 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28576 813
17-03-18 04:53:24.604 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:24.644 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:53:24.644 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:53:24.644 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:24.654 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:53:24.654 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:53:24.654 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:24.654 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:24.654 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:53:24.654 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:24.664 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:53:24.814 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:24.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:24.814 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:24.814 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:24.814 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:53:24.814 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:24.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:24.814 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:24.814 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:24.814 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:53:25.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:25.004 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:25.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28576 150' command took 2 ms to send, 1363 ms to get response, and 1368 ms overall
17-03-18 04:53:25.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:25.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130011063920911. ------
17-03-18 04:53:25.004 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:25.004 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13679 mm
17-03-18 04:53:25.004 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:25.014 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:25.014 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:25.014 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:25.014 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29883, sync = True, waitForSettling = False)
17-03-18 04:53:25.014 -07 000000569 INF: Z Motor: Moving to -0.136796 mm, started at -0.130011 mm, distance = -6.78 um
17-03-18 04:53:25.014 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:53:25.014 -07 000000474 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:53:25.024 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:25.024 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:53:25.034 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:53:25.034 -07 000000474 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:25.034 -07 000000474 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:25.034 -07 000000474 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:53:25.034 -07 000000569 INF: FPGA: Xmit ZDACW 29883\n [Z Motor]
17-03-18 04:53:25.034 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:53:25.044 -07 000000569 INF: FPGA: 'ZDACW 29883' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:53:25.044 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:25.044 -07 000000606 INF: FPGA: Recv ZDACR 29883
17-03-18 04:53:25.054 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:25.054 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:25.054 -07 000000569 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:53:25.214 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:53:25.214 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:53:25.214 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:25.214 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:53:25.214 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:53:25.214 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:25.214 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:25.214 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 205 ms overall
17-03-18 04:53:25.214 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:25.214 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:53:25.214 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:53:25.224 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:53:25.424 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:53:25.424 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:53:25.474 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:25.474 -07 000000479 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:53:25.484 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:25.484 -07 000000474 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:25.484 -07 000000474 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 04:53:25.484 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 04:53:26.434 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:26.434 -07 000000581 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:53:26.444 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:26.444 -07 000000474 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:26.474 -07 000000474 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:26.474 -07 000000474 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:53:26.474 -07 000000474 INF: Y Motor: Moved to 67.3711 after 1456 ms (table move)
17-03-18 04:53:26.474 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136796 mm (DAC = 29883)
17-03-18 04:53:26.474 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:53:26.484 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:26.484 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30584
17-03-18 04:53:26.494 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.494 -07 000000512 INF: FPGA: Recv ZSGSRD 30585
17-03-18 04:53:26.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.504 -07 000000382 INF: FPGA: Recv ZSGSRD 30579
17-03-18 04:53:26.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.514 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.514 -07 000000474 INF: FPGA: Recv ZSGSRD 30579
17-03-18 04:53:26.524 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.524 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.524 -07 000000608 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:53:26.534 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.534 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.534 -07 000000502 INF: FPGA: Recv ZSGSRD 30582
17-03-18 04:53:26.544 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.544 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.544 -07 000000447 INF: FPGA: Recv ZSGSRD 30586
17-03-18 04:53:26.554 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.554 -07 000000606 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:53:26.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:26.564 -07 000000480 INF: FPGA: Recv ZSGSRD 30584
17-03-18 04:53:26.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.574 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:26.574 -07 000000581 INF: FPGA: Recv ZPIEZORD 26355
17-03-18 04:53:26.584 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:26.584 -07 000000461 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.3 V.
17-03-18 04:53:26.584 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30584 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30584 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30579 (-136.0 uncal um), Max = 30593 (-136.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:53:26.584 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30584, posNoise = 9, negNoise = 5
17-03-18 04:53:26.584 -07 000000461 INF: Z Motor: After move to -0.136796, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:26.584 -07 000000461 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 04:53:26.584 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:26.634 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:53:26.634 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:26.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:26.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:26.634 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:26.634 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:26.634 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:26.634 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:26.634 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:26.634 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:26.644 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:26.644 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:26.654 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:53:26.654 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:53:26.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:26.704 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:26.714 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:26.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:27.004 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:27.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:27.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:27.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 04:53:27.044 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:27.044 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:27.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 04:53:27.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 04:53:27.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:27.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:53:27.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:53:27.144 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:27.144 -07 000000474 INF: Autofocus start
17-03-18 04:53:27.144 -07 000000474 INF: MeasureProfile start
17-03-18 04:53:27.144 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:27.154 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:27.154 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:27.154 -07 000000474 INF: MeasureProfile done
17-03-18 04:53:27.154 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:53:27.154 -07 000000474 INF: Autofocus finished
17-03-18 04:53:27.354 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:27.354 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:27.354 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.136801456154752. ----------
17-03-18 04:53:27.354 -07 000000610 INF: Cycle	130	Tile	10	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:27.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28390, sync = True, waitForSettling = True)
17-03-18 04:53:27.364 -07 000000610 INF: Z Motor: Moving to -0.129961 mm, started at -0.136801 mm, distance = 6.84 um
17-03-18 04:53:27.364 -07 000000610 INF: FPGA: Xmit ZDACW 28390\n [Z Motor]
17-03-18 04:53:27.364 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:53:27.374 -07 000000610 INF: FPGA: 'ZDACW 28390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:27.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:27.374 -07 000000424 INF: FPGA: Recv ZDACR 28390
17-03-18 04:53:27.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:27.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.534 -07 000000618 INF: FPGA: Recv ZSGSRD 29517
17-03-18 04:53:27.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:27.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.544 -07 000000579 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:53:27.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.554 -07 000000606 INF: FPGA: Recv ZSGSRD 29527
17-03-18 04:53:27.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.564 -07 000000626 INF: FPGA: Recv ZSGSRD 29518
17-03-18 04:53:27.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.574 -07 000000502 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:53:27.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.584 -07 000000447 INF: FPGA: Recv ZSGSRD 29519
17-03-18 04:53:27.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:53:27.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.604 -07 000000608 INF: FPGA: Recv ZSGSRD 29518
17-03-18 04:53:27.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.614 -07 000000467 INF: FPGA: Recv ZSGSRD 29519
17-03-18 04:53:27.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:27.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29516
17-03-18 04:53:27.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:27.634 -07 000000581 INF: FPGA: Recv ZPIEZORD 24953
17-03-18 04:53:27.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:27.644 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -10.0 V.
17-03-18 04:53:27.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29520 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29519 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29516 (-129.2 uncal um), Max = 29527 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:53:27.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29520, posNoise = 7, negNoise = 4
17-03-18 04:53:27.644 -07 000000610 INF: Z Motor: After move to -0.129961, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:27.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:53:27.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:27.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:27.644 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:27.644 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:27.644 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:27.644 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:27.644 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:27.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:27.644 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:27.644 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:27.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:27.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:27.654 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:27.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:27.654 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:27.654 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:27.664 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:53:27.664 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:27.664 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:53:27.664 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:27.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28567 150\n [Camera]
17-03-18 04:53:27.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:28.294 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:28.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:28.294 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:28.294 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:28.294 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) start.
17-03-18 04:53:28.294 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:28.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:28.294 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:28.294 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:28.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:53:28.384 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.005817,
17-03-18 04:53:28.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28567 813
17-03-18 04:53:28.634 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:28.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:53:28.674 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:53:28.674 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:28.674 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:53:28.674 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:53:28.674 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:28.674 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:28.674 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:28.674 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:53:28.684 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:53:28.844 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:28.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:28.844 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:28.844 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:28.844 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:53:28.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:28.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:28.844 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:28.844 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:28.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:53:29.034 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:29.034 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:29.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28567 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-18 04:53:29.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:29.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.129966094435918. ------
17-03-18 04:53:29.164 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:29.164 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13633 mm
17-03-18 04:53:29.164 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:29.174 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:29.174 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:53:29.174 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:29.174 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:53:29.174 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:53:29.174 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29781, sync = True, waitForSettling = False)
17-03-18 04:53:29.174 -07 000000579 INF: Z Motor: Moving to -0.136329 mm, started at -0.129966 mm, distance = -6.36 um
17-03-18 04:53:29.184 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:29.184 -07 000000581 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:53:29.194 -07 000000579 INF: FPGA: Xmit ZDACW 29781\n [Z Motor]
17-03-18 04:53:29.194 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:53:29.194 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:29.194 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:29.194 -07 000000626 INF: Y Motor: Moving 1346 steps-25
17-03-18 04:53:29.194 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:53:29.204 -07 000000579 INF: FPGA: 'ZDACW 29781' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:53:29.204 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:29.204 -07 000000461 INF: FPGA: Recv ZDACR 29781
17-03-18 04:53:29.214 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:29.214 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:29.214 -07 000000579 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:53:29.234 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:53:29.234 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:53:29.234 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:29.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:53:29.234 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:53:29.234 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:29.244 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:29.244 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:53:29.244 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:53:29.254 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:53:29.374 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:29.374 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:53:29.584 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:53:29.584 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:53:29.634 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:29.644 -07 000000455 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:53:29.644 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:53:29.644 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:29.644 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:53:29.644 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 04:53:30.594 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:30.594 -07 000000512 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:53:30.604 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:30.604 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:30.634 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:30.634 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:30.634 -07 000000626 INF: Y Motor: Moved to 68.2041 after 1458 ms (table move)
17-03-18 04:53:30.634 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136329 mm (DAC = 29781)
17-03-18 04:53:30.634 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.634 -07 000000479 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:53:30.644 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:53:30.644 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.644 -07 000000512 INF: FPGA: Recv ZSGSRD 30508
17-03-18 04:53:30.654 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.654 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.654 -07 000000461 INF: FPGA: Recv ZSGSRD 30512
17-03-18 04:53:30.664 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.664 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.664 -07 000000455 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:53:30.674 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.674 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.674 -07 000000447 INF: FPGA: Recv ZSGSRD 30503
17-03-18 04:53:30.684 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.684 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.684 -07 000000479 INF: FPGA: Recv ZSGSRD 30507
17-03-18 04:53:30.694 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.694 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.694 -07 000000579 INF: FPGA: Recv ZSGSRD 30513
17-03-18 04:53:30.704 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.704 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.704 -07 000000424 INF: FPGA: Recv ZSGSRD 30518
17-03-18 04:53:30.714 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.714 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.714 -07 000000480 INF: FPGA: Recv ZSGSRD 30513
17-03-18 04:53:30.724 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.724 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:30.724 -07 000000618 INF: FPGA: Recv ZSGSRD 30512
17-03-18 04:53:30.734 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.734 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:30.734 -07 000000467 INF: FPGA: Recv ZPIEZORD 26273
17-03-18 04:53:30.744 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:30.744 -07 000000625 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.3 V.
17-03-18 04:53:30.744 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30510 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30510 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30503 (-135.5 uncal um), Max = 30518 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:53:30.744 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30510, posNoise = 8, negNoise = 7
17-03-18 04:53:30.744 -07 000000625 INF: Z Motor: After move to -0.136329, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:30.744 -07 000000625 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:53:30.744 -07 000000625 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:30.794 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:53:30.794 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:30.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:30.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:30.794 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:30.794 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:30.794 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:30.794 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:30.794 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:30.794 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:30.804 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:30.804 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:30.804 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:30.804 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:53:30.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:30.864 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:53:31.164 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:53:31.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:53:31.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:31.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:31.194 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:31.204 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:31.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 04:53:31.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 04:53:31.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:31.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:31.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:53:31.304 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:31.304 -07 000000501 INF: Autofocus start
17-03-18 04:53:31.304 -07 000000501 INF: MeasureProfile start
17-03-18 04:53:31.304 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:31.314 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:31.314 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:31.314 -07 000000501 INF: MeasureProfile done
17-03-18 04:53:31.314 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:53:31.314 -07 000000501 INF: Autofocus finished
17-03-18 04:53:31.514 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:31.514 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:31.514 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136326064456262. ----------
17-03-18 04:53:31.524 -07 000000610 INF: Cycle	130	Tile	11	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:31.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28322, sync = True, waitForSettling = True)
17-03-18 04:53:31.524 -07 000000610 INF: Z Motor: Moving to -0.129650 mm, started at -0.136326 mm, distance = 6.68 um
17-03-18 04:53:31.524 -07 000000610 INF: FPGA: Xmit ZDACW 28322\n [Z Motor]
17-03-18 04:53:31.524 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:53:31.534 -07 000000610 INF: FPGA: 'ZDACW 28322' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:31.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:31.534 -07 000000606 INF: FPGA: Recv ZDACR 28322
17-03-18 04:53:31.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:31.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.694 -07 000000455 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:53:31.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.704 -07 000000581 INF: FPGA: Recv ZSGSRD 29471
17-03-18 04:53:31.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.714 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:31.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:31.714 -07 000000502 INF: FPGA: Recv ZSGSRD 29474
17-03-18 04:53:31.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.724 -07 000000447 INF: FPGA: Recv ZSGSRD 29469
17-03-18 04:53:31.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.734 -07 000000501 INF: FPGA: Recv ZSGSRD 29471
17-03-18 04:53:31.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.744 -07 000000625 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:53:31.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.754 -07 000000569 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:53:31.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.764 -07 000000608 INF: FPGA: Recv ZSGSRD 29472
17-03-18 04:53:31.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.774 -07 000000447 INF: FPGA: Recv ZSGSRD 29471
17-03-18 04:53:31.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:31.784 -07 000000606 INF: FPGA: Recv ZSGSRD 29470
17-03-18 04:53:31.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:31.794 -07 000000382 INF: FPGA: Recv ZPIEZORD 24936
17-03-18 04:53:31.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:31.804 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.9 V.
17-03-18 04:53:31.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29471 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29469 (-128.9 uncal um), Max = 29474 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:53:31.804 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29471, posNoise = 3, negNoise = 2
17-03-18 04:53:31.804 -07 000000610 INF: Z Motor: After move to -0.129650, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:31.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:53:31.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:31.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:31.804 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:31.804 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:31.804 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:31.804 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:31.804 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:31.804 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:31.804 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:53:31.804 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:31.804 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:53:31.804 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:31.804 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:31.804 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:31.804 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:31.804 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:31.814 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:31.824 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:31.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:53:31.824 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:31.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28499 150\n [Camera]
17-03-18 04:53:32.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:32.454 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:32.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:32.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:32.454 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:32.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:32.454 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:32.454 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:32.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:53:32.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:32.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:53:32.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28499 813
17-03-18 04:53:32.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:32.834 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:53:32.834 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:53:32.834 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:32.834 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:53:32.834 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:53:32.834 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:32.844 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:32.844 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:53:32.844 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:32.854 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:53:32.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:32.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:33.004 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:33.004 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:33.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:33.004 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:33.004 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:33.004 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:53:33.004 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:33.004 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:53:33.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:33.194 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:33.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28499 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-18 04:53:33.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:33.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129651308040972. ------
17-03-18 04:53:33.194 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:33.194 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13630 mm
17-03-18 04:53:33.194 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:33.194 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:53:33.194 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:33.194 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 04:53:33.204 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:33.204 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:33.204 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29775, sync = True, waitForSettling = False)
17-03-18 04:53:33.204 -07 000000608 INF: Z Motor: Moving to -0.136301 mm, started at -0.129651 mm, distance = -6.65 um
17-03-18 04:53:33.204 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:53:33.214 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:33.214 -07 000000501 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:33.214 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:33.324 -07 000000608 INF: FPGA: Xmit ZDACW 29775\n [Z Motor]
17-03-18 04:53:33.334 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:33.334 -07 000000501 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:53:33.334 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:53:33.334 -07 000000608 INF: FPGA: 'ZDACW 29775' command took 0 ms to send, 2 ms to get response, and 131 ms overall
17-03-18 04:53:33.334 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:33.344 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:33.344 -07 000000625 INF: FPGA: Recv ZDACR 29775
17-03-18 04:53:33.354 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:53:33.354 -07 000000608 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-18 04:53:33.394 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:53:33.394 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:53:33.404 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:33.404 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:53:33.404 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:53:33.404 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:33.404 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:33.404 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:53:33.404 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:53:33.414 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:53:33.414 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:33.414 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 84 ms to get response, and 212 ms overall
17-03-18 04:53:33.714 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:53:33.714 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 04:53:33.764 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.988112,
17-03-18 04:53:33.784 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:33.784 -07 000000579 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:53:33.794 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:53:33.794 -07 000000501 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:33.794 -07 000000501 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:53:33.794 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.218 mm/sec
17-03-18 04:53:34.744 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:34.744 -07 000000479 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:53:34.754 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:34.754 -07 000000501 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:34.784 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:34.784 -07 000000501 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:34.784 -07 000000501 INF: Y Motor: Moved to 69.0259 after 1581 ms (table move)
17-03-18 04:53:34.784 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136301 mm (DAC = 29775)
17-03-18 04:53:34.784 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.784 -07 000000455 INF: FPGA: Recv ZSGSRD 30511
17-03-18 04:53:34.794 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:34.794 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.794 -07 000000382 INF: FPGA: Recv ZSGSRD 30509
17-03-18 04:53:34.804 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.804 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.804 -07 000000569 INF: FPGA: Recv ZSGSRD 30512
17-03-18 04:53:34.814 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.814 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.814 -07 000000512 INF: FPGA: Recv ZSGSRD 30501
17-03-18 04:53:34.824 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.824 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.824 -07 000000501 INF: FPGA: Recv ZSGSRD 30508
17-03-18 04:53:34.834 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.834 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.834 -07 000000474 INF: FPGA: Recv ZSGSRD 30509
17-03-18 04:53:34.844 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.844 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.844 -07 000000382 INF: FPGA: Recv ZSGSRD 30498
17-03-18 04:53:34.854 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.854 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.854 -07 000000502 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:53:34.864 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.864 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.864 -07 000000512 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:53:34.874 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.874 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:34.874 -07 000000625 INF: FPGA: Recv ZSGSRD 30516
17-03-18 04:53:34.884 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.884 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:34.884 -07 000000474 INF: FPGA: Recv ZPIEZORD 26304
17-03-18 04:53:34.894 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:34.894 -07 000000480 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.2 V.
17-03-18 04:53:34.894 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30508 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30508 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30498 (-135.5 uncal um), Max = 30516 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:53:34.894 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30508, posNoise = 8, negNoise = 10
17-03-18 04:53:34.894 -07 000000480 INF: Z Motor: After move to -0.136301, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:34.894 -07 000000480 INF: Z Motor: Settle wait time = 1584 ms, measure time = 105 ms (allowed 150 ms), total time = 1689 ms
17-03-18 04:53:34.894 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:34.944 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1743 ms
17-03-18 04:53:34.944 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:34.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:34.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:34.944 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:34.944 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:34.944 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:34.944 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:34.944 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:53:34.944 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:34.954 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:34.954 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:34.954 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:34.954 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:53:34.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:35.004 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:35.304 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:35.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:35.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:35.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:35.344 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:35.344 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:35.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:53:35.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 04:53:35.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:35.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:35.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 04:53:35.444 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:35.444 -07 000000579 INF: Autofocus start
17-03-18 04:53:35.444 -07 000000579 INF: MeasureProfile start
17-03-18 04:53:35.444 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:35.454 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:35.454 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:35.454 -07 000000579 INF: MeasureProfile done
17-03-18 04:53:35.454 -07 000000579 INF: X=13  Z correction [um]=0.03858674
17-03-18 04:53:35.454 -07 000000579 INF: Autofocus finished
17-03-18 04:53:35.654 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:35.654 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:35.654 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136313216031978. ----------
17-03-18 04:53:35.664 -07 000000610 INF: Cycle	130	Tile	12	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:35.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28296, sync = True, waitForSettling = True)
17-03-18 04:53:35.664 -07 000000610 INF: Z Motor: Moving to -0.129531 mm, started at -0.136313 mm, distance = 6.78 um
17-03-18 04:53:35.664 -07 000000610 INF: FPGA: Xmit ZDACW 28296\n [Z Motor]
17-03-18 04:53:35.664 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:53:35.674 -07 000000610 INF: FPGA: 'ZDACW 28296' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:35.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:35.674 -07 000000512 INF: FPGA: Recv ZDACR 28296
17-03-18 04:53:35.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:35.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.834 -07 000000382 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:53:35.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.844 -07 000000569 INF: FPGA: Recv ZSGSRD 29456
17-03-18 04:53:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.854 -07 000000479 INF: FPGA: Recv ZSGSRD 29448
17-03-18 04:53:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.864 -07 000000626 INF: FPGA: Recv ZSGSRD 29453
17-03-18 04:53:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.874 -07 000000474 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:53:35.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29449
17-03-18 04:53:35.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:53:35.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29451
17-03-18 04:53:35.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.914 -07 000000608 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:53:35.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:35.924 -07 000000480 INF: FPGA: Recv ZSGSRD 29452
17-03-18 04:53:35.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:35.934 -07 000000382 INF: FPGA: Recv ZPIEZORD 24899
17-03-18 04:53:35.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:35.944 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -10.0 V.
17-03-18 04:53:35.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29453 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29454 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29448 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:53:35.944 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29453, posNoise = 3, negNoise = 5
17-03-18 04:53:35.944 -07 000000610 INF: Z Motor: After move to -0.129531, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:35.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:53:35.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:35.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:35.944 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:35.944 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:35.944 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:35.944 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:35.944 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:35.944 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:53:35.944 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:35.944 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:35.954 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:35.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:35.954 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:53:35.954 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:35.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:35.954 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:35.964 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:53:35.964 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:53:35.964 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:53:35.964 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:35.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28473 150\n [Camera]
17-03-18 04:53:36.164 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:36.594 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:36.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:36.594 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:36.594 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:36.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:36.594 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:36.604 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:36.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:53:36.604 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:36.604 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:53:36.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:36.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28473 813
17-03-18 04:53:36.934 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:36.994 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:53:36.994 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:53:36.994 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:37.004 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:53:37.004 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:53:37.004 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:37.004 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:37.004 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:53:37.004 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:37.014 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:53:37.144 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:37.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:37.144 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:37.144 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:37.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:53:37.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:37.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:37.144 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:37.144 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:37.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:53:37.334 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:53:37.334 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:37.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28473 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:53:37.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:37.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.12953567222242. ------
17-03-18 04:53:37.334 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:37.334 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13590 mm
17-03-18 04:53:37.334 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:37.344 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:37.344 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:53:37.344 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:53:37.344 -07 000000579 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:53:37.344 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:37.344 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29688, sync = True, waitForSettling = False)
17-03-18 04:53:37.344 -07 000000502 INF: Z Motor: Moving to -0.135903 mm, started at -0.129536 mm, distance = -6.37 um
17-03-18 04:53:37.354 -07 000000502 INF: FPGA: Xmit ZDACW 29688\n [Z Motor]
17-03-18 04:53:37.354 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:53:37.364 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:37.364 -07 000000502 INF: FPGA: 'ZDACW 29688' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:53:37.364 -07 000000455 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:53:37.374 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:53:37.374 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:37.374 -07 000000579 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:37.374 -07 000000579 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:37.374 -07 000000579 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:53:37.374 -07 000000618 INF: FPGA: Recv ZDACR 29688
17-03-18 04:53:37.384 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:37.384 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:53:37.384 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:37.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:53:37.544 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:53:37.544 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:37.544 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:37.544 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 04:53:37.544 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:53:37.544 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:53:37.544 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:37.554 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:37.554 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:53:37.554 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:53:37.564 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:53:37.764 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:53:37.764 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 04:53:37.804 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:37.814 -07 000000606 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:53:37.814 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:53:37.814 -07 000000579 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:37.814 -07 000000579 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:53:37.814 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.847 mm, average velocity = 2.171 mm/sec
17-03-18 04:53:38.764 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:38.764 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:53:38.774 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:38.774 -07 000000579 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:38.804 -07 000000579 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:38.804 -07 000000579 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:38.804 -07 000000579 INF: Y Motor: Moved to 69.8623 after 1461 ms (table move)
17-03-18 04:53:38.804 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135903 mm (DAC = 29688)
17-03-18 04:53:38.824 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:53:38.834 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:53:38.854 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.854 -07 000000467 INF: FPGA: Recv ZSGSRD 30442
17-03-18 04:53:38.864 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:38.864 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.864 -07 000000608 INF: FPGA: Recv ZSGSRD 30448
17-03-18 04:53:38.874 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.884 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.884 -07 000000569 INF: FPGA: Recv ZSGSRD 30443
17-03-18 04:53:38.894 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:38.894 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.894 -07 000000625 INF: FPGA: Recv ZSGSRD 30448
17-03-18 04:53:38.904 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.904 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.904 -07 000000455 INF: FPGA: Recv ZSGSRD 30451
17-03-18 04:53:38.914 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.914 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.914 -07 000000512 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:53:38.924 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.924 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.924 -07 000000424 INF: FPGA: Recv ZSGSRD 30440
17-03-18 04:53:38.934 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.934 -07 000000467 INF: FPGA: Recv ZSGSRD 30439
17-03-18 04:53:38.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.944 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:38.944 -07 000000502 INF: FPGA: Recv ZSGSRD 30452
17-03-18 04:53:38.954 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.954 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:38.954 -07 000000608 INF: FPGA: Recv ZPIEZORD 26197
17-03-18 04:53:38.964 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:38.964 -07 000000447 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -9.3 V.
17-03-18 04:53:38.964 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30446 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30447 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30439 (-135.1 uncal um), Max = 30452 (-135.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:53:38.964 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30446, posNoise = 6, negNoise = 7
17-03-18 04:53:38.964 -07 000000447 INF: Z Motor: After move to -0.135903, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:38.964 -07 000000447 INF: Z Motor: Settle wait time = 1464 ms, measure time = 153 ms (allowed 150 ms), total time = 1617 ms
17-03-18 04:53:38.964 -07 000000447 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-18 04:53:38.964 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:53:38.964 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:38.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:38.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:38.964 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:38.964 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:38.964 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:38.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:38.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:38.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:38.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:38.974 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:38.974 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:38.974 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:53:38.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:39.024 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:39.134 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.019446,
17-03-18 04:53:39.324 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:39.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:39.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:39.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 04:53:39.364 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:39.364 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:39.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 04:53:39.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:53:39.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:39.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:53:39.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:53:39.464 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:39.464 -07 000000382 INF: Autofocus start
17-03-18 04:53:39.464 -07 000000382 INF: MeasureProfile start
17-03-18 04:53:39.464 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:39.474 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:39.474 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:39.474 -07 000000382 INF: MeasureProfile done
17-03-18 04:53:39.474 -07 000000382 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:53:39.474 -07 000000382 INF: Autofocus finished
17-03-18 04:53:39.674 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:39.674 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:39.674 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.135914914879189. ----------
17-03-18 04:53:39.674 -07 000000610 INF: Cycle	130	Tile	13	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:39.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28229, sync = True, waitForSettling = True)
17-03-18 04:53:39.684 -07 000000610 INF: Z Motor: Moving to -0.129224 mm, started at -0.135915 mm, distance = 6.69 um
17-03-18 04:53:39.684 -07 000000610 INF: FPGA: Xmit ZDACW 28229\n [Z Motor]
17-03-18 04:53:39.684 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:53:39.694 -07 000000610 INF: FPGA: 'ZDACW 28229' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:39.694 -07 000000625 INF: FPGA: Recv ZDACR 28229
17-03-18 04:53:39.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:39.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.854 -07 000000461 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:53:39.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:39.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.864 -07 000000569 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:53:39.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.874 -07 000000579 INF: FPGA: Recv ZSGSRD 29409
17-03-18 04:53:39.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29404
17-03-18 04:53:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.894 -07 000000467 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:53:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29407
17-03-18 04:53:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29407
17-03-18 04:53:39.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.924 -07 000000579 INF: FPGA: Recv ZSGSRD 29406
17-03-18 04:53:39.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.934 -07 000000480 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:53:39.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:39.944 -07 000000579 INF: FPGA: Recv ZSGSRD 29406
17-03-18 04:53:39.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:39.954 -07 000000512 INF: FPGA: Recv ZPIEZORD 24853
17-03-18 04:53:39.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:39.964 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.0 V.
17-03-18 04:53:39.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29406 (-128.5 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29404 (-128.4 uncal um), Max = 29409 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:53:39.964 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 3, negNoise = 2
17-03-18 04:53:39.964 -07 000000610 INF: Z Motor: After move to -0.129224, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:39.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:53:39.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:39.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:39.964 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:39.964 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:39.964 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:39.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:39.964 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:39.964 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:39.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:39.964 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:39.964 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:39.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:39.974 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:39.974 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:39.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:39.974 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:39.984 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:53:39.984 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:53:39.984 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 04:53:39.984 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:53:39.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28406 150\n [Camera]
17-03-18 04:53:40.184 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:40.624 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:40.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:40.624 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:40.624 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:40.624 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) start.
17-03-18 04:53:40.624 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:40.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:40.624 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:40.624 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:40.624 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:53:40.814 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28406 813
17-03-18 04:53:40.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 04:53:41.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:53:41.004 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:53:41.004 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:41.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:53:41.004 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:41.004 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:53:41.004 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:41.014 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:41.014 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:53:41.014 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:53:41.164 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:41.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:41.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:41.164 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:41.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:53:41.164 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:41.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:41.174 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:41.174 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:41.174 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:53:41.354 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:41.364 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:41.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28406 150' command took 2 ms to send, 1488 ms to get response, and 1498 ms overall
17-03-18 04:53:41.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:41.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.129233734251758. ------
17-03-18 04:53:41.494 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:41.494 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13557 mm
17-03-18 04:53:41.494 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:41.494 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:53:41.494 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 04:53:41.494 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:41.494 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29616, sync = True, waitForSettling = False)
17-03-18 04:53:41.494 -07 000000569 INF: Z Motor: Moving to -0.135573 mm, started at -0.129234 mm, distance = -6.34 um
17-03-18 04:53:41.504 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:53:41.504 -07 000000569 INF: FPGA: Xmit ZDACW 29616\n [Z Motor]
17-03-18 04:53:41.504 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:53:41.514 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:41.514 -07 000000569 INF: FPGA: 'ZDACW 29616' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:53:41.514 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:53:41.524 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:53:41.524 -07 000000502 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:41.524 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:41.524 -07 000000502 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:53:41.524 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:41.534 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:41.534 -07 000000455 INF: FPGA: Recv ZDACR 29616
17-03-18 04:53:41.544 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:41.544 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:41.544 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:53:41.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:53:41.574 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:53:41.574 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:41.574 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:53:41.574 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:53:41.574 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:41.574 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:41.584 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:53:41.584 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:53:41.584 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:53:41.714 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:41.724 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:41.724 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:53:41.924 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:53:41.924 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 04:53:41.964 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:41.974 -07 000000606 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:53:41.984 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:41.984 -07 000000502 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:41.984 -07 000000502 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:53:41.984 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.101 mm/sec
17-03-18 04:53:42.934 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:42.934 -07 000000467 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:53:42.944 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:42.944 -07 000000502 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:42.974 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:42.974 -07 000000502 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:53:42.974 -07 000000502 INF: Y Motor: Moved to 70.6875 after 1473 ms (table move)
17-03-18 04:53:42.974 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135573 mm (DAC = 29616)
17-03-18 04:53:42.974 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:42.974 -07 000000618 INF: FPGA: Recv ZSGSRD 30392
17-03-18 04:53:42.984 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:53:42.984 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:42.984 -07 000000447 INF: FPGA: Recv ZSGSRD 30393
17-03-18 04:53:42.994 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:42.994 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:42.994 -07 000000512 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:53:43.004 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.004 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30395
17-03-18 04:53:43.014 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.014 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.014 -07 000000579 INF: FPGA: Recv ZSGSRD 30389
17-03-18 04:53:43.024 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.024 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.024 -07 000000618 INF: FPGA: Recv ZSGSRD 30396
17-03-18 04:53:43.034 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.034 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.034 -07 000000501 INF: FPGA: Recv ZSGSRD 30399
17-03-18 04:53:43.044 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.044 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.044 -07 000000606 INF: FPGA: Recv ZSGSRD 30393
17-03-18 04:53:43.054 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.054 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.054 -07 000000382 INF: FPGA: Recv ZSGSRD 30399
17-03-18 04:53:43.064 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.064 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:43.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30389
17-03-18 04:53:43.074 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.074 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:43.074 -07 000000480 INF: FPGA: Recv ZPIEZORD 26182
17-03-18 04:53:43.084 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.084 -07 000000625 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -9.3 V.
17-03-18 04:53:43.084 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30393 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30393 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30387 (-134.7 uncal um), Max = 30399 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:53:43.084 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30393, posNoise = 6, negNoise = 6
17-03-18 04:53:43.084 -07 000000625 INF: Z Motor: After move to -0.135573, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:43.084 -07 000000625 INF: Z Motor: Settle wait time = 1476 ms, measure time = 106 ms (allowed 150 ms), total time = 1582 ms
17-03-18 04:53:43.084 -07 000000625 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:43.134 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 04:53:43.134 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:43.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:43.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:43.134 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:43.134 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:43.134 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:43.134 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:43.134 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:43.134 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:43.144 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:43.144 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:43.154 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:53:43.154 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:53:43.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:43.194 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:43.494 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:43.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:43.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:43.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:43.534 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:43.534 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:43.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:53:43.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:53:43.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:43.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:43.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:53:43.634 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:43.634 -07 000000579 INF: Autofocus start
17-03-18 04:53:43.634 -07 000000579 INF: MeasureProfile start
17-03-18 04:53:43.634 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:43.644 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:53:43.644 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:43.644 -07 000000579 INF: MeasureProfile done
17-03-18 04:53:43.644 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:53:43.644 -07 000000579 INF: Autofocus finished
17-03-18 04:53:43.844 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:43.844 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:43.844 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135574431635676. ----------
17-03-18 04:53:43.844 -07 000000610 INF: Cycle	130	Tile	14	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:43.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28123, sync = True, waitForSettling = True)
17-03-18 04:53:43.854 -07 000000610 INF: Z Motor: Moving to -0.128739 mm, started at -0.135574 mm, distance = 6.84 um
17-03-18 04:53:43.854 -07 000000610 INF: FPGA: Xmit ZDACW 28123\n [Z Motor]
17-03-18 04:53:43.854 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:53:43.864 -07 000000610 INF: FPGA: 'ZDACW 28123' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:43.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:43.864 -07 000000424 INF: FPGA: Recv ZDACR 28123
17-03-18 04:53:43.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:43.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:44.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.024 -07 000000424 INF: FPGA: Recv ZSGSRD 29332
17-03-18 04:53:44.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:44.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.034 -07 000000479 INF: FPGA: Recv ZSGSRD 29331
17-03-18 04:53:44.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.044 -07 000000608 INF: FPGA: Recv ZSGSRD 29331
17-03-18 04:53:44.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.054 -07 000000480 INF: FPGA: Recv ZSGSRD 29327
17-03-18 04:53:44.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.064 -07 000000512 INF: FPGA: Recv ZSGSRD 29331
17-03-18 04:53:44.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29336
17-03-18 04:53:44.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29331
17-03-18 04:53:44.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.094 -07 000000618 INF: FPGA: Recv ZSGSRD 29332
17-03-18 04:53:44.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.104 -07 000000461 INF: FPGA: Recv ZSGSRD 29327
17-03-18 04:53:44.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:44.114 -07 000000501 INF: FPGA: Recv ZSGSRD 29330
17-03-18 04:53:44.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:44.124 -07 000000502 INF: FPGA: Recv ZPIEZORD 24743
17-03-18 04:53:44.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:44.134 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -10.1 V.
17-03-18 04:53:44.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29331 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29327 (-128.0 uncal um), Max = 29336 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:53:44.134 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 5, negNoise = 4
17-03-18 04:53:44.134 -07 000000610 INF: Z Motor: After move to -0.128739, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:44.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:53:44.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:44.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:44.134 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:44.134 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:44.134 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:44.134 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:44.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:44.134 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:44.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:44.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:44.134 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:44.134 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:44.144 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:53:44.144 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:44.144 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:44.144 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:44.154 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:53:44.154 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:44.154 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:53:44.154 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:44.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28300 150\n [Camera]
17-03-18 04:53:44.354 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:44.514 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.028963,
17-03-18 04:53:44.784 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:44.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:44.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:44.784 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:44.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:44.784 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:44.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:44.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:53:44.794 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:44.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:53:44.974 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28300 813
17-03-18 04:53:45.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:53:45.164 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:53:45.164 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:53:45.164 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:45.164 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:53:45.164 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:53:45.164 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:45.174 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:45.174 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:45.174 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:53:45.174 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:53:45.324 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:45.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:45.334 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:45.334 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:45.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:45.334 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:45.334 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:45.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:53:45.334 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:45.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:53:45.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1364
17-03-18 04:53:45.524 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:45.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28300 150' command took 2 ms to send, 1364 ms to get response, and 1371 ms overall
17-03-18 04:53:45.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:45.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128751918341126. ------
17-03-18 04:53:45.524 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:45.524 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13549 mm
17-03-18 04:53:45.524 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:45.644 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:45.644 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 04:53:45.644 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:45.644 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:53:45.644 -07 000000579 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 04:53:45.644 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29597, sync = True, waitForSettling = False)
17-03-18 04:53:45.644 -07 000000618 INF: Z Motor: Moving to -0.135486 mm, started at -0.128752 mm, distance = -6.73 um
17-03-18 04:53:45.654 -07 000000618 INF: FPGA: Xmit ZDACW 29597\n [Z Motor]
17-03-18 04:53:45.654 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:53:45.664 -07 000000618 INF: FPGA: 'ZDACW 29597' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:53:45.664 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:45.664 -07 000000480 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:53:45.674 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:53:45.674 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:45.674 -07 000000579 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:45.674 -07 000000579 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:45.674 -07 000000579 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:53:45.674 -07 000000424 INF: FPGA: Recv ZDACR 29597
17-03-18 04:53:45.684 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:45.684 -07 000000618 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 04:53:45.684 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:45.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:53:45.724 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:53:45.724 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:45.734 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:53:45.734 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:53:45.734 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:45.734 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:45.734 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:53:45.734 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:53:45.744 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:53:45.844 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:45.844 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 04:53:46.054 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:53:46.054 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 04:53:46.104 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:46.114 -07 000000626 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:53:46.114 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:46.114 -07 000000579 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:46.114 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:53:46.114 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec
17-03-18 04:53:46.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:46.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:47.064 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:47.064 -07 000000581 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:53:47.074 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:47.074 -07 000000579 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:47.104 -07 000000579 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:47.104 -07 000000579 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:47.104 -07 000000579 INF: Y Motor: Moved to 71.5176 after 1454 ms (table move)
17-03-18 04:53:47.104 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135486 mm (DAC = 29597)
17-03-18 04:53:47.104 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.104 -07 000000606 INF: FPGA: Recv ZSGSRD 30382
17-03-18 04:53:47.114 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:47.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.114 -07 000000626 INF: FPGA: Recv ZSGSRD 30384
17-03-18 04:53:47.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.124 -07 000000512 INF: FPGA: Recv ZSGSRD 30381
17-03-18 04:53:47.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30375
17-03-18 04:53:47.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:53:47.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.154 -07 000000455 INF: FPGA: Recv ZSGSRD 30375
17-03-18 04:53:47.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.164 -07 000000626 INF: FPGA: Recv ZSGSRD 30378
17-03-18 04:53:47.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.174 -07 000000479 INF: FPGA: Recv ZSGSRD 30375
17-03-18 04:53:47.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.184 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.184 -07 000000474 INF: FPGA: Recv ZSGSRD 30385
17-03-18 04:53:47.194 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.194 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:47.194 -07 000000581 INF: FPGA: Recv ZSGSRD 30385
17-03-18 04:53:47.204 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.204 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:47.204 -07 000000455 INF: FPGA: Recv ZPIEZORD 26134
17-03-18 04:53:47.214 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.214 -07 000000382 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.3 V.
17-03-18 04:53:47.214 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30381 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30382 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30375 (-134.7 uncal um), Max = 30387 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:53:47.214 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30381, posNoise = 6, negNoise = 6
17-03-18 04:53:47.214 -07 000000382 INF: Z Motor: After move to -0.135486, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:47.214 -07 000000382 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:53:47.214 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:47.264 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-18 04:53:47.264 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:47.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:47.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:47.264 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:47.264 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:47.264 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:47.264 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:47.274 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:47.274 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:47.274 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:47.274 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:47.284 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:53:47.284 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:53:47.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:47.324 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:47.624 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:47.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:47.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:47.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:47.664 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:47.664 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:47.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:53:47.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:53:47.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:47.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:47.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:53:47.764 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:47.764 -07 000000479 INF: Autofocus start
17-03-18 04:53:47.764 -07 000000479 INF: MeasureProfile start
17-03-18 04:53:47.764 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:47.774 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:47.774 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:47.774 -07 000000479 INF: MeasureProfile done
17-03-18 04:53:47.774 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:53:47.774 -07 000000479 INF: Autofocus finished
17-03-18 04:53:47.974 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:47.974 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:47.974 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135497341089975. ----------
17-03-18 04:53:47.974 -07 000000610 INF: Cycle	130	Tile	15	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:47.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28104, sync = True, waitForSettling = True)
17-03-18 04:53:47.984 -07 000000610 INF: Z Motor: Moving to -0.128652 mm, started at -0.135497 mm, distance = 6.85 um
17-03-18 04:53:47.984 -07 000000610 INF: FPGA: Xmit ZDACW 28104\n [Z Motor]
17-03-18 04:53:47.984 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:53:47.994 -07 000000610 INF: FPGA: 'ZDACW 28104' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:47.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:47.994 -07 000000455 INF: FPGA: Recv ZDACR 28104
17-03-18 04:53:48.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:48.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.154 -07 000000502 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:53:48.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:48.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.164 -07 000000467 INF: FPGA: Recv ZSGSRD 29319
17-03-18 04:53:48.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.174 -07 000000447 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:53:48.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.184 -07 000000579 INF: FPGA: Recv ZSGSRD 29312
17-03-18 04:53:48.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.194 -07 000000480 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:53:48.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.204 -07 000000618 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:53:48.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.214 -07 000000461 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:53:48.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.224 -07 000000382 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:53:48.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.234 -07 000000579 INF: FPGA: Recv ZSGSRD 29314
17-03-18 04:53:48.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:48.244 -07 000000608 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:53:48.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:48.254 -07 000000569 INF: FPGA: Recv ZPIEZORD 24748
17-03-18 04:53:48.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:48.264 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -10.0 V.
17-03-18 04:53:48.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29312 (-127.9 uncal um), Max = 29320 (-127.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:53:48.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 2, negNoise = 6
17-03-18 04:53:48.264 -07 000000610 INF: Z Motor: After move to -0.128652, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:48.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 04:53:48.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:48.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:48.264 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:48.264 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:48.264 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:48.264 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:48.264 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:48.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:48.264 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:48.264 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:48.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:48.264 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:48.274 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:48.274 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:48.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:48.274 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:48.284 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:48.284 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:48.284 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:53:48.284 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:48.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28281 150\n [Camera]
17-03-18 04:53:48.484 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:48.914 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:48.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:48.914 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:48.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:48.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:48.914 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:48.914 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:48.914 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:53:48.924 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:48.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:53:49.104 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28281 813
17-03-18 04:53:49.254 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:49.314 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:53:49.314 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:53:49.314 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:49.314 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:53:49.314 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:53:49.314 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:49.314 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:49.314 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:53:49.324 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:49.324 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:53:49.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:49.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:49.464 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:49.464 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:49.464 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:53:49.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:49.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:49.464 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:49.464 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:49.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 04:53:49.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:53:49.654 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:49.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28281 150' command took 5 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:53:49.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:49.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128668403583283. ------
17-03-18 04:53:49.654 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:49.654 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13508 mm
17-03-18 04:53:49.654 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:49.664 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29508, sync = True, waitForSettling = False)
17-03-18 04:53:49.664 -07 000000447 INF: Z Motor: Moving to -0.135079 mm, started at -0.128668 mm, distance = -6.41 um
17-03-18 04:53:49.664 -07 000000447 INF: FPGA: Xmit ZDACW 29508\n [Z Motor]
17-03-18 04:53:49.664 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:53:49.664 -07 000000581 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:53:49.664 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:49.664 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 04:53:49.664 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:53:49.674 -07 000000447 INF: FPGA: 'ZDACW 29508' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:49.674 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:49.684 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:49.684 -07 000000455 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:53:49.694 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:49.694 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:53:49.694 -07 000000581 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:49.694 -07 000000626 INF: FPGA: Recv ZDACR 29508
17-03-18 04:53:49.694 -07 000000581 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:49.694 -07 000000581 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:53:49.704 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:49.704 -07 000000447 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:53:49.704 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:49.864 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:53:49.864 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:53:49.864 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:49.864 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:53:49.864 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:53:49.864 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:49.874 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:49.874 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:53:49.874 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:53:49.874 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:49.874 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 210 ms overall
17-03-18 04:53:49.884 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:53:49.884 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.016692,
17-03-18 04:53:50.074 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:53:50.074 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 04:53:50.124 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:50.134 -07 000000579 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:53:50.134 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:53:50.134 -07 000000581 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:50.134 -07 000000581 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:53:50.134 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 04:53:51.084 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:51.084 -07 000000608 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:53:51.094 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.094 -07 000000581 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:51.124 -07 000000581 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:51.124 -07 000000581 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:51.124 -07 000000581 INF: Y Motor: Moved to 72.3481 after 1457 ms (table move)
17-03-18 04:53:51.124 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135079 mm (DAC = 29508)
17-03-18 04:53:51.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.124 -07 000000618 INF: FPGA: Recv ZSGSRD 30315
17-03-18 04:53:51.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:53:51.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30312
17-03-18 04:53:51.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30313
17-03-18 04:53:51.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.154 -07 000000447 INF: FPGA: Recv ZSGSRD 30313
17-03-18 04:53:51.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.164 -07 000000479 INF: FPGA: Recv ZSGSRD 30316
17-03-18 04:53:51.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.174 -07 000000625 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:53:51.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.184 -07 000000579 INF: FPGA: Recv ZSGSRD 30317
17-03-18 04:53:51.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.194 -07 000000480 INF: FPGA: Recv ZSGSRD 30323
17-03-18 04:53:51.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.204 -07 000000382 INF: FPGA: Recv ZSGSRD 30317
17-03-18 04:53:51.214 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.214 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:51.214 -07 000000447 INF: FPGA: Recv ZSGSRD 30322
17-03-18 04:53:51.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:51.224 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:51.224 -07 000000608 INF: FPGA: Recv ZPIEZORD 26072
17-03-18 04:53:51.234 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:51.234 -07 000000424 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -9.3 V.
17-03-18 04:53:51.234 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30316 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30316 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30311 (-134.3 uncal um), Max = 30323 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:53:51.234 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30316, posNoise = 7, negNoise = 5
17-03-18 04:53:51.234 -07 000000424 INF: Z Motor: After move to -0.135079, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:51.234 -07 000000424 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:53:51.234 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:51.284 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:53:51.284 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:51.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:51.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:51.284 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:51.284 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:51.284 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:51.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:51.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:51.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:51.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:51.284 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:51.304 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:53:51.304 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:53:51.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:51.354 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:51.654 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:51.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:51.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:51.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 04:53:51.684 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:51.694 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:51.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:53:51.714 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:51.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:53:51.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:51.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:53:51.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:53:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:51.794 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:51.794 -07 000000625 INF: Autofocus start
17-03-18 04:53:51.794 -07 000000625 INF: MeasureProfile start
17-03-18 04:53:51.794 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:51.804 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:51.804 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:51.804 -07 000000625 INF: MeasureProfile done
17-03-18 04:53:51.804 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:53:51.804 -07 000000625 INF: Autofocus finished
17-03-18 04:53:52.004 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:52.004 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:53:52.014 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.13507976730076. ----------
17-03-18 04:53:52.014 -07 000000610 INF: Cycle	130	Tile	16	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:52.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28015, sync = True, waitForSettling = True)
17-03-18 04:53:52.014 -07 000000610 INF: Z Motor: Moving to -0.128244 mm, started at -0.135080 mm, distance = 6.84 um
17-03-18 04:53:52.014 -07 000000610 INF: FPGA: Xmit ZDACW 28015\n [Z Motor]
17-03-18 04:53:52.014 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:53:52.024 -07 000000610 INF: FPGA: 'ZDACW 28015' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:52.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:52.024 -07 000000467 INF: FPGA: Recv ZDACR 28015
17-03-18 04:53:52.034 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:52.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29254
17-03-18 04:53:52.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:52.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.194 -07 000000625 INF: FPGA: Recv ZSGSRD 29252
17-03-18 04:53:52.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.204 -07 000000447 INF: FPGA: Recv ZSGSRD 29254
17-03-18 04:53:52.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.214 -07 000000474 INF: FPGA: Recv ZSGSRD 29257
17-03-18 04:53:52.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.224 -07 000000579 INF: FPGA: Recv ZSGSRD 29254
17-03-18 04:53:52.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29253
17-03-18 04:53:52.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.244 -07 000000608 INF: FPGA: Recv ZSGSRD 29255
17-03-18 04:53:52.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29255
17-03-18 04:53:52.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29251
17-03-18 04:53:52.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:52.274 -07 000000479 INF: FPGA: Recv ZSGSRD 29253
17-03-18 04:53:52.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:52.284 -07 000000606 INF: FPGA: Recv ZPIEZORD 24689
17-03-18 04:53:52.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:52.294 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -10.0 V.
17-03-18 04:53:52.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29254 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29254 (-127.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29251 (-127.5 uncal um), Max = 29257 (-127.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:53:52.294 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29254, posNoise = 3, negNoise = 3
17-03-18 04:53:52.294 -07 000000610 INF: Z Motor: After move to -0.128244, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:52.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:53:52.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:52.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:52.294 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:52.294 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:52.294 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:52.294 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:52.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:52.294 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:52.294 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:52.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:52.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:52.294 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:52.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:52.294 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:52.304 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:53:52.304 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:52.304 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:53:52.304 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:53:52.314 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:52.314 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:53:52.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28192 150\n [Camera]
17-03-18 04:53:52.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:52.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:52.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:52.944 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:52.944 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:52.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) start.
17-03-18 04:53:52.944 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:52.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:52.944 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:52.944 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:52.944 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:53:53.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28192 813
17-03-18 04:53:53.284 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:53.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:53:53.324 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:53:53.324 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:53.324 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:53:53.324 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:53:53.324 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:53.324 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:53:53.324 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:53:53.324 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:53:53.334 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:53:53.494 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:53.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:53.494 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:53.494 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:53.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:53:53.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:53.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:53.494 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:53.494 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:53.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 04:53:53.684 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:53.684 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:53.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28192 150' command took 2 ms to send, 1363 ms to get response, and 1368 ms overall
17-03-18 04:53:53.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:53.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.12825725400621. ------
17-03-18 04:53:53.684 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:53.684 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13480 mm
17-03-18 04:53:53.684 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:53.694 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:53:53.694 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29447, sync = True, waitForSettling = False)
17-03-18 04:53:53.694 -07 000000581 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:53:53.694 -07 000000447 INF: Z Motor: Moving to -0.134800 mm, started at -0.128257 mm, distance = -6.54 um
17-03-18 04:53:53.694 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:53.694 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:53.694 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:53.694 -07 000000606 INF: FPGA: Recv YRDPOS 148170
17-03-18 04:53:53.704 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:53.704 -07 000000581 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:53.704 -07 000000581 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:53.824 -07 000000447 INF: FPGA: Xmit ZDACW 29447\n [Z Motor]
17-03-18 04:53:53.834 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:53:53.834 -07 000000447 INF: FPGA: 'ZDACW 29447' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 04:53:53.834 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:53.834 -07 000000581 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:53.834 -07 000000581 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:53:53.834 -07 000000461 INF: FPGA: Recv ZDACR 29447
17-03-18 04:53:53.844 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:53.844 -07 000000447 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-18 04:53:53.844 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:53.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 04:53:53.904 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:53:53.904 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:53.904 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 04:53:53.904 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:53:53.904 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:53.904 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:53.904 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 75 ms to get response, and 211 ms overall
17-03-18 04:53:53.904 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:53.904 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:53:53.904 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-18 04:53:53.914 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:53:54.214 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:53:54.214 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:53:54.264 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:54.274 -07 000000480 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:53:54.274 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:53:54.274 -07 000000581 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:54.274 -07 000000581 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:53:54.274 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.182 mm/sec
17-03-18 04:53:55.224 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:55.224 -07 000000480 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:53:55.234 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:55.234 -07 000000581 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:55.254 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.99219,
17-03-18 04:53:55.264 -07 000000581 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:55.264 -07 000000581 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:55.264 -07 000000581 INF: Y Motor: Moved to 73.1748 after 1574 ms (table move)
17-03-18 04:53:55.264 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134800 mm (DAC = 29447)
17-03-18 04:53:55.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30277
17-03-18 04:53:55.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:53:55.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.294 -07 000000479 INF: FPGA: Recv ZSGSRD 30278
17-03-18 04:53:55.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.314 -07 000000455 INF: FPGA: Recv ZSGSRD 30277
17-03-18 04:53:55.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:53:55.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.324 -07 000000424 INF: FPGA: Recv ZSGSRD 30272
17-03-18 04:53:55.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.334 -07 000000625 INF: FPGA: Recv ZSGSRD 30269
17-03-18 04:53:55.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.344 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.344 -07 000000569 INF: FPGA: Recv ZSGSRD 30279
17-03-18 04:53:55.354 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.354 -07 000000626 INF: FPGA: Recv ZSGSRD 30271
17-03-18 04:53:55.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.364 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.364 -07 000000480 INF: FPGA: Recv ZSGSRD 30269
17-03-18 04:53:55.374 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.374 -07 000000424 INF: FPGA: Recv ZSGSRD 30270
17-03-18 04:53:55.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:55.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30272
17-03-18 04:53:55.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.394 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:55.394 -07 000000569 INF: FPGA: Recv ZPIEZORD 26050
17-03-18 04:53:55.404 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:55.404 -07 000000467 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -9.3 V.
17-03-18 04:53:55.404 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30273 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30272 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30269 (-134.0 uncal um), Max = 30279 (-134.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:53:55.404 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30273, posNoise = 6, negNoise = 4
17-03-18 04:53:55.404 -07 000000467 INF: Z Motor: After move to -0.134800, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:55.404 -07 000000467 INF: Z Motor: Settle wait time = 1577 ms, measure time = 132 ms (allowed 150 ms), total time = 1709 ms
17-03-18 04:53:55.404 -07 000000467 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:55.424 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 04:53:55.424 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:55.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:55.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:55.424 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:55.424 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:55.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:55.424 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:55.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:53:55.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:55.434 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:55.434 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:55.434 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:53:55.434 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:53:55.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:55.484 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:55.784 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:55.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:55.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:55.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:55.824 -07 000000606 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:53:55.824 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:55.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 386 ms overall
17-03-18 04:53:55.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:53:55.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:55.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:53:55.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:53:55.924 -07 000000512 INF: Autofocus start
17-03-18 04:53:55.924 -07 000000512 INF: MeasureProfile start
17-03-18 04:53:55.924 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:55.924 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:55.934 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:55.934 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:53:55.934 -07 000000512 INF: MeasureProfile done
17-03-18 04:53:55.934 -07 000000512 INF: X=9  Z correction [um]=0.01934518
17-03-18 04:53:55.934 -07 000000512 INF: Autofocus finished
17-03-18 04:53:56.134 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:53:56.134 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:53:56.134 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134803526178664. ----------
17-03-18 04:53:56.144 -07 000000610 INF: Cycle	130	Tile	17	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:53:56.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27964, sync = True, waitForSettling = True)
17-03-18 04:53:56.144 -07 000000610 INF: Z Motor: Moving to -0.128011 mm, started at -0.134804 mm, distance = 6.79 um
17-03-18 04:53:56.144 -07 000000610 INF: FPGA: Xmit ZDACW 27964\n [Z Motor]
17-03-18 04:53:56.144 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:53:56.154 -07 000000610 INF: FPGA: 'ZDACW 27964' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:53:56.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:56.154 -07 000000579 INF: FPGA: Recv ZDACR 27964
17-03-18 04:53:56.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:53:56.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.314 -07 000000502 INF: FPGA: Recv ZSGSRD 29218
17-03-18 04:53:56.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:56.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:53:56.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.334 -07 000000455 INF: FPGA: Recv ZSGSRD 29215
17-03-18 04:53:56.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29218
17-03-18 04:53:56.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.354 -07 000000618 INF: FPGA: Recv ZSGSRD 29216
17-03-18 04:53:56.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.364 -07 000000569 INF: FPGA: Recv ZSGSRD 29214
17-03-18 04:53:56.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29220
17-03-18 04:53:56.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.384 -07 000000447 INF: FPGA: Recv ZSGSRD 29216
17-03-18 04:53:56.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29216
17-03-18 04:53:56.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:56.404 -07 000000579 INF: FPGA: Recv ZSGSRD 29218
17-03-18 04:53:56.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:56.414 -07 000000467 INF: FPGA: Recv ZPIEZORD 24689
17-03-18 04:53:56.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:56.424 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.9 V.
17-03-18 04:53:56.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29216 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29216 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29211 (-127.2 uncal um), Max = 29220 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:53:56.424 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29216, posNoise = 4, negNoise = 5
17-03-18 04:53:56.424 -07 000000610 INF: Z Motor: After move to -0.128011, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:56.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:53:56.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:56.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:56.424 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:56.424 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:53:56.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:56.424 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:56.424 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:53:56.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:53:56.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:53:56.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:53:56.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:53:56.424 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:53:56.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:53:56.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:53:56.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:53:56.434 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:53:56.444 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:53:56.444 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:56.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:53:56.444 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:53:56.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28140 150\n [Camera]
17-03-18 04:53:56.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:53:56.714 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:53:56.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:53:57.074 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:53:57.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:53:57.074 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:57.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:53:57.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:53:57.074 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:57.074 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:57.074 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:53:57.084 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:57.084 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:53:57.264 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28140 813
17-03-18 04:53:57.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:53:57.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:53:57.474 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:53:57.474 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:57.474 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:53:57.474 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:53:57.474 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:57.484 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:53:57.484 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:53:57.484 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:57.484 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:53:57.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:53:57.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:53:57.624 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:53:57.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:53:57.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:53:57.624 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:53:57.624 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:53:57.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:53:57.624 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:53:57.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:53:57.814 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:53:57.814 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:53:57.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28140 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-18 04:53:57.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:53:57.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.128013133944823. ------
17-03-18 04:53:57.934 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:53:57.934 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13394 mm
17-03-18 04:53:57.934 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:53:57.934 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:53:57.934 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:53:57.934 -07 000000479 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:53:57.934 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29258, sync = True, waitForSettling = False)
17-03-18 04:53:57.934 -07 000000382 INF: Z Motor: Moving to -0.133935 mm, started at -0.128013 mm, distance = -5.92 um
17-03-18 04:53:57.944 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:53:57.944 -07 000000382 INF: FPGA: Xmit ZDACW 29258\n [Z Motor]
17-03-18 04:53:57.944 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 04:53:57.954 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:57.954 -07 000000382 INF: FPGA: 'ZDACW 29258' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:53:57.954 -07 000000608 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:53:57.964 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:53:57.964 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:53:57.964 -07 000000479 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:57.964 -07 000000479 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:53:57.964 -07 000000479 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:53:57.974 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:53:57.974 -07 000000447 INF: FPGA: Recv ZDACR 29258
17-03-18 04:53:57.984 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:53:57.984 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:53:57.984 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:53:58.024 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:53:58.024 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:53:58.024 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:58.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:53:58.024 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:53:58.024 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:53:58.034 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:53:58.034 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:53:58.034 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:53:58.034 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:53:58.164 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:53:58.164 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:53:58.354 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:53:58.354 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:53:58.394 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:58.404 -07 000000512 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:53:58.404 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:53:58.404 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:58.404 -07 000000479 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:53:58.404 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec
17-03-18 04:53:59.354 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:53:59.354 -07 000000579 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:53:59.364 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:59.364 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:53:59.384 -07 000000479 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:53:59.384 -07 000000479 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:53:59.384 -07 000000479 INF: Y Motor: Moved to 74.0068 after 1447 ms (table move)
17-03-18 04:53:59.384 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133935 mm (DAC = 29258)
17-03-18 04:53:59.384 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.394 -07 000000480 INF: FPGA: Recv ZSGSRD 30144
17-03-18 04:53:59.394 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:53:59.394 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30147
17-03-18 04:53:59.404 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:53:59.404 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.404 -07 000000626 INF: FPGA: Recv ZSGSRD 30144
17-03-18 04:53:59.414 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.414 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.414 -07 000000424 INF: FPGA: Recv ZSGSRD 30140
17-03-18 04:53:59.424 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.424 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.424 -07 000000625 INF: FPGA: Recv ZSGSRD 30139
17-03-18 04:53:59.434 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.434 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.434 -07 000000461 INF: FPGA: Recv ZSGSRD 30139
17-03-18 04:53:59.444 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.444 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.444 -07 000000581 INF: FPGA: Recv ZSGSRD 30135
17-03-18 04:53:59.454 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.454 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.454 -07 000000618 INF: FPGA: Recv ZSGSRD 30136
17-03-18 04:53:59.464 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.464 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.464 -07 000000501 INF: FPGA: Recv ZSGSRD 30140
17-03-18 04:53:59.474 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:53:59.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:53:59.474 -07 000000569 INF: FPGA: Recv ZSGSRD 30146
17-03-18 04:53:59.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.484 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:53:59.484 -07 000000608 INF: FPGA: Recv ZPIEZORD 25889
17-03-18 04:53:59.494 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:53:59.494 -07 000000502 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.464 V. Piezo Error = -9.3 V.
17-03-18 04:53:59.494 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30141 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30140 (-133.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30135 (-133.1 uncal um), Max = 30147 (-133.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:53:59.494 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30141, posNoise = 6, negNoise = 6
17-03-18 04:53:59.494 -07 000000502 INF: Z Motor: After move to -0.133935, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:53:59.494 -07 000000502 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-18 04:53:59.494 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:53:59.544 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 04:53:59.544 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:53:59.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:53:59.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:53:59.544 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:53:59.544 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:53:59.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:53:59.544 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:53:59.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:53:59.544 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:53:59.554 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:53:59.554 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:53:59.564 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:53:59.564 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:53:59.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:53:59.604 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:53:59.904 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:53:59.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:53:59.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:53:59.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:53:59.944 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:53:59.944 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:53:59.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:54:00.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:54:00.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:00.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:54:00.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:54:00.044 -07 000000474 INF: Autofocus start
17-03-18 04:54:00.044 -07 000000474 INF: MeasureProfile start
17-03-18 04:54:00.044 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:54:00.044 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:54:00.054 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:54:00.054 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:54:00.054 -07 000000474 INF: MeasureProfile done
17-03-18 04:54:00.054 -07 000000474 INF: X=-30  Z correction [um]=-0.1494375
17-03-18 04:54:00.054 -07 000000474 INF: Autofocus finished
17-03-18 04:54:00.254 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:54:00.254 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:54:00.254 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133955530175952. ----------
17-03-18 04:54:00.254 -07 000000610 INF: Cycle	130	Tile	18	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:54:00.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27738, sync = True, waitForSettling = True)
17-03-18 04:54:00.264 -07 000000610 INF: Z Motor: Moving to -0.126976 mm, started at -0.133956 mm, distance = 6.98 um
17-03-18 04:54:00.264 -07 000000610 INF: FPGA: Xmit ZDACW 27738\n [Z Motor]
17-03-18 04:54:00.264 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:54:00.274 -07 000000610 INF: FPGA: 'ZDACW 27738' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:54:00.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:54:00.274 -07 000000455 INF: FPGA: Recv ZDACR 27738
17-03-18 04:54:00.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:54:00.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.434 -07 000000479 INF: FPGA: Recv ZSGSRD 29050
17-03-18 04:54:00.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:54:00.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.444 -07 000000501 INF: FPGA: Recv ZSGSRD 29059
17-03-18 04:54:00.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.454 -07 000000581 INF: FPGA: Recv ZSGSRD 29052
17-03-18 04:54:00.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.464 -07 000000447 INF: FPGA: Recv ZSGSRD 29052
17-03-18 04:54:00.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29059
17-03-18 04:54:00.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.484 -07 000000382 INF: FPGA: Recv ZSGSRD 29055
17-03-18 04:54:00.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29059
17-03-18 04:54:00.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.504 -07 000000480 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:54:00.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29051
17-03-18 04:54:00.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:00.524 -07 000000461 INF: FPGA: Recv ZSGSRD 29062
17-03-18 04:54:00.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:54:00.534 -07 000000479 INF: FPGA: Recv ZPIEZORD 24481
17-03-18 04:54:00.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:00.544 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.233 V. Piezo Error = -10.0 V.
17-03-18 04:54:00.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29055 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29054 (-126.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29050 (-126.2 uncal um), Max = 29062 (-126.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:54:00.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29055, posNoise = 7, negNoise = 5
17-03-18 04:54:00.544 -07 000000610 INF: Z Motor: After move to -0.126976, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:54:00.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:54:00.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:54:00.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:54:00.544 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:54:00.544 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:54:00.544 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:54:00.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:54:00.544 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:54:00.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:54:00.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:54:00.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:54:00.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:54:00.544 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:54:00.554 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:54:00.554 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:54:00.554 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:54:00.554 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:54:00.564 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:54:00.564 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:54:00.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:54:00.564 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:54:00.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 27915 150\n [Camera]
17-03-18 04:54:00.634 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 3.994908,
17-03-18 04:54:00.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:54:01.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:54:01.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:54:01.194 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:54:01.194 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:54:01.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:54:01.204 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:54:01.204 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:54:01.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:54:01.204 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:54:01.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:54:01.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27915 813
17-03-18 04:54:01.534 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:54:01.574 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:54:01.574 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:54:01.574 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:01.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:54:01.584 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:54:01.584 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:01.584 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:54:01.584 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:54:01.584 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:54:01.594 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:54:01.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:01.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 129. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:54:01.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:54:01.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:54:01.744 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:54:01.744 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:54:01.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) start.
17-03-18 04:54:01.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:54:01.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:54:01.744 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:54:01.744 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:54:01.744 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:54:01.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-18 04:54:01.934 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:54:01.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 27915 150' command took 2 ms to send, 1357 ms to get response, and 1369 ms overall
17-03-18 04:54:01.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:54:01.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.12697883579. ------
17-03-18 04:54:01.944 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:54:01.944 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13338 mm
17-03-18 04:54:01.944 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:54:01.944 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:54:01.944 -07 000000461 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 04:54:01.944 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:54:01.944 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29137, sync = True, waitForSettling = False)
17-03-18 04:54:01.944 -07 000000608 INF: Z Motor: Moving to -0.133381 mm, started at -0.126979 mm, distance = -6.40 um
17-03-18 04:54:01.954 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:54:01.954 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:54:01.954 -07 000000382 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:54:01.964 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:54:01.964 -07 000000461 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:54:01.964 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:54:01.964 -07 000000461 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:54:01.964 -07 000000461 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:54:01.974 -07 000000608 INF: FPGA: Xmit ZDACW 29137\n [Z Motor]
17-03-18 04:54:01.974 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:54:01.984 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:54:01.984 -07 000000608 INF: FPGA: 'ZDACW 29137' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:54:01.994 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:54:01.994 -07 000000606 INF: FPGA: Recv ZDACR 29137
17-03-18 04:54:02.004 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:54:02.004 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:54:02.144 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:54:02.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2638694096, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:54:02.144 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:54:02.144 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:02.144 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:54:02.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:02.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:54:02.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:54:02.154 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:54:02.164 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:54:02.164 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:54:02.164 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:54:02.354 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:54:02.354 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:54:02.384 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:54:02.394 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:54:02.404 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:54:02.404 -07 000000461 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:54:02.404 -07 000000461 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:54:02.404 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.141 mm/sec
17-03-18 04:54:03.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:54:03.354 -07 000000479 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:54:03.364 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:54:03.364 -07 000000461 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:54:03.384 -07 000000461 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:54:03.384 -07 000000461 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:54:03.384 -07 000000461 INF: Y Motor: Moved to 74.8306 after 1434 ms (table move)
17-03-18 04:54:03.384 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133381 mm (DAC = 29137)
17-03-18 04:54:03.384 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.384 -07 000000579 INF: FPGA: Recv ZSGSRD 30050
17-03-18 04:54:03.394 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:54:03.394 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.394 -07 000000479 INF: FPGA: Recv ZSGSRD 30048
17-03-18 04:54:03.404 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.404 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30050
17-03-18 04:54:03.414 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.414 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.414 -07 000000382 INF: FPGA: Recv ZSGSRD 30056
17-03-18 04:54:03.424 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.424 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.424 -07 000000474 INF: FPGA: Recv ZSGSRD 30052
17-03-18 04:54:03.434 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.434 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.434 -07 000000455 INF: FPGA: Recv ZSGSRD 30056
17-03-18 04:54:03.444 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.444 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.444 -07 000000581 INF: FPGA: Recv ZSGSRD 30053
17-03-18 04:54:03.454 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.454 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.454 -07 000000512 INF: FPGA: Recv ZSGSRD 30054
17-03-18 04:54:03.464 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.464 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.464 -07 000000608 INF: FPGA: Recv ZSGSRD 30050
17-03-18 04:54:03.474 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.474 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:03.474 -07 000000461 INF: FPGA: Recv ZSGSRD 30043
17-03-18 04:54:03.484 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.484 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:54:03.484 -07 000000455 INF: FPGA: Recv ZPIEZORD 25817
17-03-18 04:54:03.494 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:03.494 -07 000000569 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.3 V.
17-03-18 04:54:03.494 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30051 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30051 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30043 (-132.5 uncal um), Max = 30056 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:54:03.494 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30051, posNoise = 5, negNoise = 8
17-03-18 04:54:03.494 -07 000000569 INF: Z Motor: After move to -0.133381, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:54:03.494 -07 000000569 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-18 04:54:03.494 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:54:03.544 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 04:54:03.544 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:54:03.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:54:03.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:54:03.544 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:54:03.544 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:54:03.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:54:03.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:54:03.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:54:03.544 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:54:03.554 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:54:03.554 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:54:03.554 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:54:03.554 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:54:03.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:54:03.614 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:54:03.904 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:54:03.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:54:03.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:54:03.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 04:54:03.944 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:54:03.944 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:54:03.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 04:54:04.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:54:04.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:04.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:54:04.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:54:04.054 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:54:04.054 -07 000000474 INF: Autofocus start
17-03-18 04:54:04.054 -07 000000474 INF: MeasureProfile start
17-03-18 04:54:04.054 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:54:04.064 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:54:04.064 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:54:04.064 -07 000000474 INF: MeasureProfile done
17-03-18 04:54:04.064 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:54:04.064 -07 000000474 INF: Autofocus finished
17-03-18 04:54:04.264 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:54:04.264 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:54:04.264 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133377351083194. ----------
17-03-18 04:54:04.264 -07 000000610 INF: Cycle	130	Tile	19	Exposure Settings		A	428	G	206	T	206	C	428
17-03-18 04:54:04.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27631, sync = True, waitForSettling = True)
17-03-18 04:54:04.274 -07 000000610 INF: Z Motor: Moving to -0.126487 mm, started at -0.133377 mm, distance = 6.89 um
17-03-18 04:54:04.274 -07 000000610 INF: FPGA: Xmit ZDACW 27631\n [Z Motor]
17-03-18 04:54:04.274 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:54:04.284 -07 000000610 INF: FPGA: 'ZDACW 27631' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:54:04.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:54:04.284 -07 000000501 INF: FPGA: Recv ZDACR 27631
17-03-18 04:54:04.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:54:04.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.444 -07 000000467 INF: FPGA: Recv ZSGSRD 28981
17-03-18 04:54:04.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:54:04.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.454 -07 000000455 INF: FPGA: Recv ZSGSRD 28978
17-03-18 04:54:04.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.464 -07 000000461 INF: FPGA: Recv ZSGSRD 28982
17-03-18 04:54:04.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.474 -07 000000424 INF: FPGA: Recv ZSGSRD 28982
17-03-18 04:54:04.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.484 -07 000000447 INF: FPGA: Recv ZSGSRD 28987
17-03-18 04:54:04.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.494 -07 000000581 INF: FPGA: Recv ZSGSRD 28978
17-03-18 04:54:04.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.504 -07 000000569 INF: FPGA: Recv ZSGSRD 28974
17-03-18 04:54:04.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.514 -07 000000479 INF: FPGA: Recv ZSGSRD 28983
17-03-18 04:54:04.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.524 -07 000000626 INF: FPGA: Recv ZSGSRD 28982
17-03-18 04:54:04.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:54:04.534 -07 000000455 INF: FPGA: Recv ZSGSRD 28978
17-03-18 04:54:04.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:54:04.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:54:04.544 -07 000000512 INF: FPGA: Recv ZPIEZORD 24383
17-03-18 04:54:04.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:04.554 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.216 V. Piezo Error = -10.1 V.
17-03-18 04:54:04.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28980 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28982 (-125.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 28974 (-125.7 uncal um), Max = 28987 (-125.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:54:04.554 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28980, posNoise = 7, negNoise = 6
17-03-18 04:54:04.554 -07 000000610 INF: Z Motor: After move to -0.126487, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:54:04.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:54:04.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:54:04.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:54:04.554 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:54:04.554 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:54:04.554 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:54:04.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:54:04.554 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:54:04.554 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:54:04.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:54:04.554 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:54:04.554 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:54:04.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:54:04.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:54:04.564 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:54:04.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:54:04.564 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:54:04.564 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:54:04.564 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:54:04.564 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:54:04.574 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:54:04.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 27808 150\n [Camera]
17-03-18 04:54:04.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:54:05.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-18 04:54:05.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-18 04:54:05.204 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:54:05.204 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:54:05.204 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) start.
17-03-18 04:54:05.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-18 04:54:05.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-18 04:54:05.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:54:05.204 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:54:05.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:54:05.394 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27808 813
17-03-18 04:54:05.544 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-18 04:54:05.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:54:05.604 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:54:05.604 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:05.604 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:54:05.604 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:54:05.604 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:05.604 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:54:05.604 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:54:05.604 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:54:05.614 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:54:05.754 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-18 04:54:05.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-18 04:54:05.754 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:54:05.754 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:54:05.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:54:05.754 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-18 04:54:05.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-18 04:54:05.754 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:54:05.754 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:54:05.754 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 04:54:05.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:54:05.944 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:54:05.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 27808 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:54:06.014 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.028963,
17-03-18 04:54:06.154 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:54:06.154 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:54:06.154 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:06.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 04:54:06.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:54:06.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:54:06.164 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:54:06.164 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:54:06.164 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:54:06.164 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:54:06.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 04:54:06.214 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 04:54:06.214 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:54:06.254 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:54:06.264 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 04:54:06.264 -07 000000610 INF: Imaging Cycle 130: ScanTilesCommand Cycle 130 time end. Duration was 163617 ms.
17-03-18 04:54:06.264 -07 000000610 INF: =================== Cycle #130 ===================
17-03-18 04:54:06.264 -07 000000610 INF: ===================  ===================
17-03-18 04:54:06.264 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:54:06.274 -07 000000569 INF: FPGA: Recv EXLED1ADCR 22
17-03-18 04:54:06.274 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:54:06.274 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-18 04:54:06.274 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 130, FrontChillerTemperature: 4.028963, FrontChillerHeatSinkTemperature: 0.446268, AmbientTemperature: 18.60282, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.25059, GreenLEDSensorTemperature: 27.29541, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-18 04:54:06.374 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.