17-03-18 04:54:06.424 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:06.434 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:54:06.434 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 04:54:06.434 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:54:06.434 -07 000000382 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:54:06.444 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:54:06.444 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:54:06.444 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:54:06.444 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:54:06.444 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:54:06.564 -07 000000480 INF: FPGA: Recv YMVTO 154378 875
17-03-18 04:54:06.564 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 112 ms to get response, and 115 ms overall
17-03-18 04:54:06.564 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 04:54:06.564 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 875 steps (0.547 mm). Slippage = -0.003 mm (0.00%).
17-03-18 04:54:06.564 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 04:54:06.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:06.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:54:09.564 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:54:09.564 -07 000000608 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:54:09.574 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:54:09.574 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:54:09.604 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:54:09.604 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 04:54:09.604 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3171 ms
17-03-18 04:54:09.604 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 60° ===================
17-03-18 04:54:09.604 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:54:09.604 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:54:09.614 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:54:09.624 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:54:09.624 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:54:09.624 -07 000000625 INF: FPGA: Recv TEC2EN 
17-03-18 04:54:09.634 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:09.634 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 60° ===================
17-03-18 04:54:09.634 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:09.634 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:54:09.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:09.664 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:54:09.664 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:54:09.664 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:54:09.964 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:54:09.984 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:54:09.984 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:54:10.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:10.054 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:54:10.054 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:54:10.154 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:10.154 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:54:10.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:10.224 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:54:10.224 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:54:10.224 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:54:10.354 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:54:10.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:11.484 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.988112,
17-03-18 04:54:11.714 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:11.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1810, R2=1879, Total=3689. Warn if over 250 bubbles per interval.
17-03-18 04:54:13.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:13.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:13.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:14.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:14.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:14.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:14.454 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:54:14.454 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:14.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:14.614 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:54:14.614 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:54:14.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:14.774 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:54:14.774 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:54:14.774 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:54:14.904 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:54:14.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:15.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:15.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:15.404 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-18 04:54:15.404 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:16.614 -07 000000610 INF: AsyncDelayTimer waited 1209ms
17-03-18 04:54:16.614 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:54:16.614 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:16.634 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:54:16.634 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:54:16.634 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:54:16.714 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 6
17-03-18 04:54:16.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=6, R2=6, Total=12. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:16.764 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:54:16.784 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:54:16.784 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:54:16.834 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:16.844 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.000345,
17-03-18 04:54:16.854 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:54:16.854 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:54:16.954 -07 000000610 INF: =================== Cycle #131, Pumping Reagent CMS (4) ===================
17-03-18 04:54:16.954 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:54:16.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:16.984 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:54:16.984 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:54:16.984 -07 000000610 INF: =================== Cycle #131, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:54:17.114 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:54:17.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:18.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:18.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:19.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:19.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:19.074 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:54:19.074 -07 000000610 INF: =================== Cycle #131, Pumping Reagent CMS (4) ===================
17-03-18 04:54:19.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:19.234 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:54:19.234 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:54:19.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:19.394 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:54:19.394 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:54:19.394 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:54:19.524 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:54:19.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:19.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:20.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:20.014 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:54:20.014 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:21.234 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:54:21.234 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:54:21.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:21.254 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:54:21.254 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:54:21.254 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:54:21.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:54:21.424 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:54:21.424 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:54:21.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:21.494 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:54:21.494 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:54:21.594 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:21.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:54:21.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:21.624 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:54:21.624 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:54:21.624 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:54:21.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:21.754 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:54:21.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:22.204 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.018051,
17-03-18 04:54:22.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:22.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:22.694 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:54:22.694 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:22.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:22.854 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:54:22.854 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:54:22.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:23.014 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:54:23.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:54:23.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:54:23.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:54:23.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:23.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:23.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:23.634 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:54:23.634 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:23.634 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:54:23.634 -07 000000501 INF: WaitCommand(10000) start
17-03-18 04:54:23.634 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:54:24.854 -07 000000579 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:54:24.854 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 04:54:24.884 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:54:24.884 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:54:25.014 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:54:25.054 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:26.584 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:26.614 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:26.714 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:26.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:27.034 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:27.064 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:27.064 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:54:27.064 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:54:27.064 -07 000000579 INF: ===================  ===================
17-03-18 04:54:27.564 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.004458,
17-03-18 04:54:31.714 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:31.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:32.924 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.016692,
17-03-18 04:54:33.644 -07 000000501 INF: WaitCommand(10000) end
17-03-18 04:54:33.644 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:33.644 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:54:33.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:33.674 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:54:33.674 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:54:33.674 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:54:33.804 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:54:33.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:36.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:38.284 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.014009,
17-03-18 04:54:39.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:40.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:40.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:40.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:40.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:40.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:41.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:41.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:41.714 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:41.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:41.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:41.804 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:54:41.804 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:41.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:41.964 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:54:41.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:54:42.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:42.124 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:54:42.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:54:42.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:54:42.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:54:42.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:42.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:42.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:42.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:54:42.744 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:43.644 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.018051,
17-03-18 04:54:43.964 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:54:43.964 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:54:43.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:43.984 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:54:43.984 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:54:43.984 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:54:44.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:54:44.214 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:54:44.214 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:54:44.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:44.284 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:54:44.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:54:44.384 -07 000000610 INF: =================== Cycle #131, Pumping Reagent IMT (1) ===================
17-03-18 04:54:44.384 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:54:44.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:44.414 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:54:44.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:54:44.414 -07 000000610 INF: =================== Cycle #131, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:54:44.544 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:54:44.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:46.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:46.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:46.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:46.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:46.504 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:54:46.504 -07 000000610 INF: =================== Cycle #131, Pumping Reagent IMT (1) ===================
17-03-18 04:54:46.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:46.664 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:54:46.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:54:46.714 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:46.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:46.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:46.824 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:54:46.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:54:46.824 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:54:46.954 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:54:46.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:47.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:47.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:47.444 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:54:47.444 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:48.664 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:54:48.664 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:54:48.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:48.684 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:54:48.684 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:54:48.684 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:54:48.914 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:54:48.934 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:54:48.934 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:54:48.984 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:54:49.004 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:54:49.004 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:54:49.004 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.979922,
17-03-18 04:54:49.104 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:49.104 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:54:49.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:49.134 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:54:49.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:54:49.134 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:54:49.264 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:54:49.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:54:50.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:50.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:50.204 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:54:50.204 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:54:50.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:50.364 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:54:50.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:54:50.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:54:50.524 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:54:50.524 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:54:50.524 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:54:50.654 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:54:50.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:51.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:54:51.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:54:51.144 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:54:51.144 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:51.144 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 65° ===================
17-03-18 04:54:51.144 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:54:51.144 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:54:51.144 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:54:51.154 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:54:51.154 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:54:51.154 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 04:54:51.164 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:54:51.164 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 65° ===================
17-03-18 04:54:51.164 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:54:51.164 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:54:51.714 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:54.364 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.977204,
17-03-18 04:54:56.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:54:56.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:54:59.724 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.975845,
17-03-18 04:55:01.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:01.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:05.084 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.986717,
17-03-18 04:55:06.714 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:06.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:10.444 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.02213,
17-03-18 04:55:11.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:11.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:15.804 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.990831,
17-03-18 04:55:16.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:16.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:21.164 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.026244,
17-03-18 04:55:21.174 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:55:21.174 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:55:21.174 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:55:21.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:21.304 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:55:21.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:55:21.304 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:55:21.434 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:55:21.474 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:55:21.714 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:22.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:22.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:22.044 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 04:55:22.044 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:55:22.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:22.204 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:55:22.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:55:22.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:22.364 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:55:22.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:55:22.364 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:55:22.494 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:55:22.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:22.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:22.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:22.984 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:55:22.984 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:55:22.984 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:55:22.984 -07 000000480 INF: WaitCommand(30000) start
17-03-18 04:55:22.984 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:55:24.204 -07 000000608 INF: AsyncDelayTimer waited 1213ms
17-03-18 04:55:24.204 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-18 04:55:24.234 -07 000000608 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:55:24.234 -07 000000608 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:55:24.364 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:55:24.404 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:55:26.524 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.994908,
17-03-18 04:55:26.714 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:26.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:26.744 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:26.774 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:55:27.194 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:27.224 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:27.224 -07 000000608 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:55:27.224 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:55:27.224 -07 000000608 INF: ===================  ===================
17-03-18 04:55:31.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:31.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:31.884 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.985358,
17-03-18 04:55:36.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:37.244 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.028963,
17-03-18 04:55:41.724 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:42.604 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.986717,
17-03-18 04:55:46.724 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:47.964 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.003063,
17-03-18 04:55:51.714 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:55:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1816, R2=1885, Total=3701. Warn if over 250 bubbles per interval.
17-03-18 04:55:52.994 -07 000000480 INF: WaitCommand(30000) end
17-03-18 04:55:52.994 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 22° ===================
17-03-18 04:55:52.994 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:55:52.994 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:55:53.004 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:55:53.004 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 3 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:55:53.014 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:55:53.014 -07 000000625 INF: FPGA: Recv TEC2EN 
17-03-18 04:55:53.024 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:55:53.024 -07 000000610 INF: =================== Cycle #131, Flow Cell Temp 22° ===================
17-03-18 04:55:53.024 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:55:53.024 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:55:53.024 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:55:53.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:53.064 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:55:53.064 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:55:53.064 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:55:53.194 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:55:53.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:55:53.324 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.001704,
17-03-18 04:55:56.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:56.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:55:56.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:55:56.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:55:56.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:56.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:55:57.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:57.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:57.294 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:55:57.294 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:55:57.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:57.454 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:55:57.454 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:55:57.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:57.614 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:55:57.614 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:55:57.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:55:57.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:55:57.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:58.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:55:58.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:55:58.234 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:55:58.234 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:55:58.684 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.99219,
17-03-18 04:55:59.454 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:55:59.454 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:55:59.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:55:59.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:55:59.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:55:59.474 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:55:59.624 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:55:59.644 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:55:59.644 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:55:59.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:55:59.714 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:55:59.714 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:55:59.814 -07 000000610 INF: =================== Cycle #131, Pumping Reagent USM (2) ===================
17-03-18 04:55:59.814 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:55:59.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:55:59.844 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:55:59.844 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:55:59.844 -07 000000610 INF: =================== Cycle #131, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:55:59.974 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:56:00.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:56:01.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:01.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:56:01.714 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:01.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:01.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:01.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:01.934 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:56:01.934 -07 000000610 INF: =================== Cycle #131, Pumping Reagent USM (2) ===================
17-03-18 04:56:02.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:56:02.094 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:56:02.094 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:56:02.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:56:02.254 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:56:02.254 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:56:02.254 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:56:02.384 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:56:02.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:02.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:02.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:02.874 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:56:02.874 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:56:04.044 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.007176,
17-03-18 04:56:04.094 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:56:04.094 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:56:04.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:56:04.114 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:56:04.114 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:56:04.114 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:56:04.264 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:56:04.284 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:56:04.284 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:56:04.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:56:04.354 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:56:04.354 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:56:04.454 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:56:04.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:56:04.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:56:04.484 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:56:04.484 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:56:04.484 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:56:04.614 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:56:04.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:56:05.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:05.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:05.554 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:56:05.554 -07 000000610 INF: =================== Cycle #131, Pumping Reagent PR2 (3) ===================
17-03-18 04:56:05.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:56:05.714 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:56:05.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:56:05.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:56:05.874 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:56:05.874 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:56:05.874 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:56:06.004 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:56:06.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:06.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:06.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:06.494 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:56:06.494 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:56:06.494 -07 000000455 INF: WaitCommand(10000) start
17-03-18 04:56:06.494 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:56:06.494 -07 000000461 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:56:06.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:06.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:07.714 -07 000000461 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:56:07.714 -07 000000461 INF: LanePump: Xmit /1?\r
17-03-18 04:56:07.744 -07 000000461 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:56:07.744 -07 000000461 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:56:07.874 -07 000000461 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:56:07.914 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:56:09.404 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.985358,
17-03-18 04:56:09.444 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:09.474 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:56:09.894 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 04:56:09.924 -07 000000461 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:56:09.924 -07 000000461 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:56:09.924 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:56:09.924 -07 000000461 INF: ===================  ===================
17-03-18 04:56:11.714 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:11.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:14.764 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.999021,
17-03-18 04:56:16.504 -07 000000455 INF: WaitCommand(10000) end
17-03-18 04:56:16.504 -07 000000610 INF: =================== Cycle #131, Imaging ===================
17-03-18 04:56:16.504 -07 000000610 INF: Imaging Cycle 131: ScanTilesCommand Cycle 131 time start.
17-03-18 04:56:16.504 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:56:16.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:56:16.534 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:56:16.534 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:56:16.534 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:56:16.714 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:16.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:16.834 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:56:16.854 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:56:16.854 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:56:16.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:56:16.924 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:56:16.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:16.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:16.924 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:56:16.924 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:16.924 -07 000000512 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:56:16.924 -07 000000382 INF: FPGA: Recv EXLED1ON 
17-03-18 04:56:16.934 -07 000000512 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:56:16.934 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:56:16.934 -07 000000608 INF: FPGA: Recv EXLED1ADCR 23121
17-03-18 04:56:16.944 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:16.944 -07 000000512 INF: RedLED: Using Red data: Photodiode ADC 23121 --> 7.4 mW (old method), or 204.9 mW (new method). Difference = 197.5 mW
17-03-18 04:56:16.944 -07 000000512 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:56:16.944 -07 000000625 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:56:16.954 -07 000000512 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:16.954 -07 000000512 INF: RedLED: LED was on for 20 ms
17-03-18 04:56:16.954 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 04:56:16.954 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:56:16.954 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:16.954 -07 000000512 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:56:16.954 -07 000000447 INF: FPGA: Recv EXLED2ON 
17-03-18 04:56:16.964 -07 000000512 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:16.964 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:56:16.964 -07 000000382 INF: FPGA: Recv EXLED1ADCR 2104
17-03-18 04:56:16.974 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:16.974 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-18 04:56:16.974 -07 000000512 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:56:16.974 -07 000000424 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:56:16.984 -07 000000512 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:16.984 -07 000000512 INF: GreenLED: LED was on for 19 ms
17-03-18 04:56:16.984 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-18 04:56:16.984 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:56:16.984 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-18 04:56:16.994 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:16.994 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:56:17.494 -07 000000569 INF: FPGA: Recv EMOUT
17-03-18 04:56:17.494 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:56:17.494 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:56:17.494 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 04:56:17.504 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:17.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:17.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126497019879368. ------
17-03-18 04:56:17.504 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17846 mm
17-03-18 04:56:17.504 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:17.504 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:17.514 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:56:17.514 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-18 04:56:17.514 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:17.514 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38984, sync = True, waitForSettling = False)
17-03-18 04:56:17.514 -07 000000608 INF: Z Motor: Moving to -0.178457 mm, started at -0.126497 mm, distance = -51.96 um
17-03-18 04:56:17.514 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:17.514 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:56:17.514 -07 000000512 INF: FPGA: Recv YRDPOS 154381
17-03-18 04:56:17.524 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:17.524 -07 000000569 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:17.524 -07 000000569 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:56:17.524 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:56:17.524 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:17.534 -07 000000608 INF: FPGA: Xmit ZDACW 38984\n [Z Motor]
17-03-18 04:56:17.534 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:56:17.544 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:56:17.544 -07 000000608 INF: FPGA: 'ZDACW 38984' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:56:17.554 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:17.554 -07 000000579 INF: FPGA: Recv ZDACR 38984
17-03-18 04:56:17.564 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:56:17.564 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:56:17.724 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:17.724 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 215 ms overall
17-03-18 04:56:19.224 -07 000000479 INF: FPGA: Recv YMVTO 122701 24779
17-03-18 04:56:19.224 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1707 ms overall
17-03-18 04:56:19.224 -07 000000569 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:56:19.224 -07 000000569 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24779 steps (15.487 mm). Slippage = 0.018 mm (0.00%).
17-03-18 04:56:19.224 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1707 ms, distance = 15.469 mm, average velocity = 9.062 mm/sec
17-03-18 04:56:20.124 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.005817,
17-03-18 04:56:21.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:22.074 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:22.074 -07 000000382 INF: FPGA: Recv YRDPOS 122694
17-03-18 04:56:22.084 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.084 -07 000000569 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:22.114 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:22.114 -07 000000569 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:56:22.114 -07 000000569 INF: Y Motor: Moved to 59.9092 after 4601 ms
17-03-18 04:56:22.114 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178457 mm (DAC = 38984)
17-03-18 04:56:22.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.114 -07 000000467 INF: FPGA: Recv ZSGSRD 37072
17-03-18 04:56:22.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:22.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.124 -07 000000606 INF: FPGA: Recv ZSGSRD 37069
17-03-18 04:56:22.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.134 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.134 -07 000000579 INF: FPGA: Recv ZSGSRD 37067
17-03-18 04:56:22.144 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.144 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.144 -07 000000474 INF: FPGA: Recv ZSGSRD 37064
17-03-18 04:56:22.154 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.154 -07 000000424 INF: FPGA: Recv ZSGSRD 37070
17-03-18 04:56:22.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.164 -07 000000447 INF: FPGA: Recv ZSGSRD 37069
17-03-18 04:56:22.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.174 -07 000000467 INF: FPGA: Recv ZSGSRD 37070
17-03-18 04:56:22.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.184 -07 000000502 INF: FPGA: Recv ZSGSRD 37067
17-03-18 04:56:22.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.194 -07 000000618 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:56:22.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:22.204 -07 000000626 INF: FPGA: Recv ZSGSRD 37071
17-03-18 04:56:22.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.214 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:22.214 -07 000000455 INF: FPGA: Recv ZPIEZORD 33236
17-03-18 04:56:22.224 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:22.224 -07 000000501 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.5 V.
17-03-18 04:56:22.224 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37069 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37070 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37064 (-177.5 uncal um), Max = 37073 (-177.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:56:22.224 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37069, posNoise = 4, negNoise = 5
17-03-18 04:56:22.224 -07 000000501 INF: Z Motor: After move to -0.178457, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:22.224 -07 000000501 INF: Z Motor: Settle wait time = 4603 ms, measure time = 106 ms (allowed 150 ms), total time = 4709 ms
17-03-18 04:56:22.224 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:22.274 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-18 04:56:22.274 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:22.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:22.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:22.274 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:22.274 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:22.274 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:22.274 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:22.274 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:22.274 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:56:22.304 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:56:22.304 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:22.304 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:56:22.304 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:22.314 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:56:22.314 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 04:56:22.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:22.374 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:22.664 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:22.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:22.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:22.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:56:22.704 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:22.704 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:22.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 04:56:22.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:56:22.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:22.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:56:22.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:56:22.814 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:22.814 -07 000000447 INF: Image SNR check: start
17-03-18 04:56:22.814 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:22.824 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:56:22.824 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:22.824 -07 000000447 INF: Image SNR check: pass  [peak (Max-Min)=139.63]
17-03-18 04:56:22.824 -07 000000447 INF: Autofocus start
17-03-18 04:56:22.824 -07 000000447 INF: MeasureProfile start
17-03-18 04:56:22.834 -07 000000447 INF: MeasureProfile done
17-03-18 04:56:22.834 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:56:22.834 -07 000000447 INF: Autofocus finished
17-03-18 04:56:23.024 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:23.024 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:23.024 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178462471894072. ----------
17-03-18 04:56:23.024 -07 000000610 INF: Cycle	131	Tile	1	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:23.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37481, sync = True, waitForSettling = True)
17-03-18 04:56:23.034 -07 000000610 INF: Z Motor: Moving to -0.171577 mm, started at -0.178462 mm, distance = 6.89 um
17-03-18 04:56:23.034 -07 000000610 INF: FPGA: Xmit ZDACW 37481\n [Z Motor]
17-03-18 04:56:23.034 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:56:23.044 -07 000000610 INF: FPGA: 'ZDACW 37481' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:23.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:23.044 -07 000000606 INF: FPGA: Recv ZDACR 37481
17-03-18 04:56:23.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.204 -07 000000382 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:56:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.214 -07 000000581 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:56:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.224 -07 000000461 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:56:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.234 -07 000000608 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:56:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.244 -07 000000579 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:56:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.254 -07 000000455 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:56:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.264 -07 000000447 INF: FPGA: Recv ZSGSRD 36003
17-03-18 04:56:23.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.274 -07 000000512 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:56:23.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.284 -07 000000480 INF: FPGA: Recv ZSGSRD 35995
17-03-18 04:56:23.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:23.294 -07 000000502 INF: FPGA: Recv ZSGSRD 35996
17-03-18 04:56:23.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:23.304 -07 000000424 INF: FPGA: Recv ZPIEZORD 31832
17-03-18 04:56:23.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:23.314 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -9.2 V.
17-03-18 04:56:23.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35999 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35998 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35995 (-170.7 uncal um), Max = 36004 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:23.314 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35999, posNoise = 5, negNoise = 4
17-03-18 04:56:23.314 -07 000000610 INF: Z Motor: After move to -0.171577, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:23.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:56:23.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:23.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:23.314 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:23.314 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:23.314 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:23.314 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:23.314 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:23.314 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:23.314 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:23.314 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:23.314 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:23.314 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:56:23.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:23.324 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:23.334 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:56:23.334 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:56:23.344 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:56:23.344 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:23.344 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:56:23.344 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:23.354 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:56:23.354 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 04:56:23.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37658 150\n [Camera]
17-03-18 04:56:23.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:23.984 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:23.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:23.984 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:23.994 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:23.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:23.994 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:23.994 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:23.994 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 04:56:24.004 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:24.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:56:24.184 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37658 814
17-03-18 04:56:24.334 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:24.394 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:56:24.394 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:56:24.394 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:24.394 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:24.394 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:56:24.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:56:24.404 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:56:24.404 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:24.404 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:24.414 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:56:24.534 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:24.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:24.534 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:24.534 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:24.534 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:56:24.544 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:24.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:24.544 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:24.674 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:24.674 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:56:24.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1364
17-03-18 04:56:24.734 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:24.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37658 150' command took 2 ms to send, 1360 ms to get response, and 1371 ms overall
17-03-18 04:56:24.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:24.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171588564902388. ------
17-03-18 04:56:24.734 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17771 mm
17-03-18 04:56:24.734 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:24.734 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:56:24.734 -07 000000579 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 04:56:24.734 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38820, sync = True, waitForSettling = False)
17-03-18 04:56:24.734 -07 000000626 INF: Z Motor: Moving to -0.177707 mm, started at -0.171589 mm, distance = -6.12 um
17-03-18 04:56:24.744 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:24.744 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:24.754 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:56:24.754 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:24.754 -07 000000502 INF: FPGA: Recv YRDPOS 122694
17-03-18 04:56:24.764 -07 000000626 INF: FPGA: Xmit ZDACW 38820\n [Z Motor]
17-03-18 04:56:24.764 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:56:24.764 -07 000000579 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:24.764 -07 000000579 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:24.764 -07 000000579 INF: Y Motor: Moving 1333 steps0
17-03-18 04:56:24.764 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:56:24.774 -07 000000626 INF: FPGA: 'ZDACW 38820' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:56:24.774 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:24.784 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:24.794 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:24.794 -07 000000608 INF: FPGA: Recv ZDACR 38820
17-03-18 04:56:24.804 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:56:24.804 -07 000000626 INF: Z Motor: MoveAbsStepped took 61 ms (did NOT wait for settling yet))
17-03-18 04:56:24.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:56:24.934 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:56:24.934 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:24.944 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:56:24.944 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:56:24.974 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:24.974 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:56:25.064 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:56:25.064 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:56:25.064 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:25.064 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:56:25.074 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 04:56:25.154 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:56:25.154 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:56:25.204 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:25.204 -07 000000581 INF: FPGA: Recv YRDPOS 124378
17-03-18 04:56:25.214 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:25.214 -07 000000579 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:25.214 -07 000000579 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:56:25.214 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.099 mm/sec
17-03-18 04:56:25.484 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.989471,
17-03-18 04:56:26.164 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:26.164 -07 000000625 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:56:26.174 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:26.174 -07 000000579 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:26.204 -07 000000579 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:26.204 -07 000000579 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:56:26.204 -07 000000579 INF: Y Motor: Moved to 60.7319 after 1465 ms (table move)
17-03-18 04:56:26.204 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177707 mm (DAC = 38820)
17-03-18 04:56:26.204 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.214 -07 000000480 INF: FPGA: Recv ZSGSRD 36955
17-03-18 04:56:26.214 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:56:26.214 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.214 -07 000000626 INF: FPGA: Recv ZSGSRD 36959
17-03-18 04:56:26.224 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.224 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.224 -07 000000625 INF: FPGA: Recv ZSGSRD 36953
17-03-18 04:56:26.234 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.234 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.234 -07 000000467 INF: FPGA: Recv ZSGSRD 36951
17-03-18 04:56:26.244 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.244 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36948
17-03-18 04:56:26.254 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.254 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.254 -07 000000606 INF: FPGA: Recv ZSGSRD 36953
17-03-18 04:56:26.264 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.264 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.264 -07 000000424 INF: FPGA: Recv ZSGSRD 36955
17-03-18 04:56:26.274 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.274 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36953
17-03-18 04:56:26.284 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.284 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.284 -07 000000467 INF: FPGA: Recv ZSGSRD 36958
17-03-18 04:56:26.294 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.294 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:26.294 -07 000000474 INF: FPGA: Recv ZSGSRD 36955
17-03-18 04:56:26.304 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.304 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:26.304 -07 000000606 INF: FPGA: Recv ZPIEZORD 33158
17-03-18 04:56:26.314 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:26.314 -07 000000455 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.4 V.
17-03-18 04:56:26.314 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36954 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36954 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36948 (-176.8 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:56:26.314 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36954, posNoise = 5, negNoise = 6
17-03-18 04:56:26.314 -07 000000455 INF: Z Motor: After move to -0.177707, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:26.314 -07 000000455 INF: Z Motor: Settle wait time = 1468 ms, measure time = 103 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:56:26.314 -07 000000455 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:26.364 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:56:26.364 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:26.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:26.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:26.364 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:26.364 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:26.364 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:26.364 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:26.364 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:56:26.364 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:26.374 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:26.374 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:26.384 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:56:26.384 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:56:26.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:26.434 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:56:26.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:26.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:26.734 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:56:26.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:56:26.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:26.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2583891104, 0x0, 559484976) start.
17-03-18 04:56:26.764 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:26.764 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:26.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:56:26.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2583891104, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 04:56:26.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:26.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:56:26.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:56:26.964 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:26.964 -07 000000501 INF: Autofocus start
17-03-18 04:56:26.964 -07 000000501 INF: MeasureProfile start
17-03-18 04:56:26.964 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:26.974 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:26.974 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:26.974 -07 000000501 INF: MeasureProfile done
17-03-18 04:56:26.974 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:56:26.974 -07 000000501 INF: Autofocus finished
17-03-18 04:56:27.174 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:27.174 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:27.174 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177723687497769. ----------
17-03-18 04:56:27.174 -07 000000610 INF: Cycle	131	Tile	2	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:27.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37352, sync = True, waitForSettling = True)
17-03-18 04:56:27.184 -07 000000610 INF: Z Motor: Moving to -0.170986 mm, started at -0.177724 mm, distance = 6.74 um
17-03-18 04:56:27.184 -07 000000610 INF: FPGA: Xmit ZDACW 37352\n [Z Motor]
17-03-18 04:56:27.184 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:56:27.194 -07 000000610 INF: FPGA: 'ZDACW 37352' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:27.194 -07 000000382 INF: FPGA: Recv ZDACR 37352
17-03-18 04:56:27.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:27.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.354 -07 000000608 INF: FPGA: Recv ZSGSRD 35910
17-03-18 04:56:27.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:27.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.364 -07 000000512 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:56:27.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.374 -07 000000479 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:56:27.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.384 -07 000000461 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:56:27.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.394 -07 000000502 INF: FPGA: Recv ZSGSRD 35914
17-03-18 04:56:27.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:27.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.404 -07 000000479 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:56:27.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.414 -07 000000608 INF: FPGA: Recv ZSGSRD 35903
17-03-18 04:56:27.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.424 -07 000000474 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:56:27.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35910
17-03-18 04:56:27.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:27.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:56:27.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:27.454 -07 000000479 INF: FPGA: Recv ZPIEZORD 31722
17-03-18 04:56:27.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:27.464 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 04:56:27.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35914 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:27.464 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 7, negNoise = 4
17-03-18 04:56:27.464 -07 000000610 INF: Z Motor: After move to -0.170986, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:27.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:56:27.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:27.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:27.464 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:27.464 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:27.464 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:27.464 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:27.464 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:27.464 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:27.464 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:27.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:27.464 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:27.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:27.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:27.474 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:27.474 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:56:27.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:27.484 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:56:27.484 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:56:27.484 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:56:27.484 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:56:27.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37529 150\n [Camera]
17-03-18 04:56:27.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:28.114 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:28.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:28.124 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:28.124 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:28.124 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2602972488, 0x0, 391868352) start.
17-03-18 04:56:28.124 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:28.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:28.124 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:28.124 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:28.124 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2638394752, 0x0, 418435064) start.
17-03-18 04:56:28.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37529 814
17-03-18 04:56:28.464 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:28.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2602972488, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:56:28.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:56:28.514 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:28.524 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:28.524 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:56:28.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2638394752, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:56:28.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:56:28.524 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:28.524 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:28.534 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:56:28.664 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:28.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:28.664 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:28.784 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:28.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:28.784 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:28.784 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:28.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:56:28.784 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:28.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:56:28.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:56:28.864 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:28.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37529 150' command took 2 ms to send, 1360 ms to get response, and 1370 ms overall
17-03-18 04:56:28.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:28.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.170997537385346. ------
17-03-18 04:56:28.864 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:28.864 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17777 mm
17-03-18 04:56:28.864 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:28.864 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:28.874 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:28.874 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:28.874 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38834, sync = True, waitForSettling = False)
17-03-18 04:56:28.874 -07 000000625 INF: Z Motor: Moving to -0.177771 mm, started at -0.170998 mm, distance = -6.77 um
17-03-18 04:56:28.874 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:56:28.874 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:56:28.884 -07 000000625 INF: FPGA: Xmit ZDACW 38834\n [Z Motor]
17-03-18 04:56:28.884 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:56:28.894 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:28.894 -07 000000625 INF: FPGA: 'ZDACW 38834' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:56:28.894 -07 000000618 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:56:28.904 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:56:28.904 -07 000000608 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:28.904 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:28.904 -07 000000608 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:56:28.904 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:28.904 -07 000000461 INF: FPGA: Recv ZDACR 38834
17-03-18 04:56:28.914 -07 000000625 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:56:28.914 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:28.914 -07 000000625 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:56:29.074 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:29.074 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:29.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:56:29.184 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:56:29.184 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:29.184 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:56:29.194 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:56:29.194 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:29.194 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:29.194 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:29.194 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 04:56:29.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:56:29.284 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:56:29.284 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:56:29.334 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:29.334 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:56:29.344 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:56:29.344 -07 000000608 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:29.344 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:56:29.344 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.841 mm, average velocity = 2.184 mm/sec
17-03-18 04:56:30.294 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:30.294 -07 000000461 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:56:30.304 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:30.304 -07 000000608 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:30.334 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:30.334 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:56:30.334 -07 000000608 INF: Y Motor: Moved to 61.5625 after 1460 ms (table move)
17-03-18 04:56:30.334 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177771 mm (DAC = 38834)
17-03-18 04:56:30.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.334 -07 000000579 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:56:30.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:56:30.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.344 -07 000000512 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:56:30.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.354 -07 000000480 INF: FPGA: Recv ZSGSRD 36964
17-03-18 04:56:30.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.364 -07 000000569 INF: FPGA: Recv ZSGSRD 36960
17-03-18 04:56:30.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.374 -07 000000626 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:56:30.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.384 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:56:30.394 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.394 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.394 -07 000000512 INF: FPGA: Recv ZSGSRD 36964
17-03-18 04:56:30.404 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.414 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.414 -07 000000606 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:56:30.424 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:56:30.424 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.424 -07 000000502 INF: FPGA: Recv ZSGSRD 36962
17-03-18 04:56:30.434 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:30.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:30.444 -07 000000606 INF: FPGA: Recv ZSGSRD 36964
17-03-18 04:56:30.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:56:30.454 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:30.454 -07 000000608 INF: FPGA: Recv ZPIEZORD 33170
17-03-18 04:56:30.464 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:30.464 -07 000000447 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.4 V.
17-03-18 04:56:30.464 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36965 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36964 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36960 (-176.9 uncal um), Max = 36971 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:56:30.464 -07 000000447 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36965, posNoise = 6, negNoise = 5
17-03-18 04:56:30.464 -07 000000447 INF: Z Motor: After move to -0.177771, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:30.464 -07 000000447 INF: Z Motor: Settle wait time = 1464 ms, measure time = 125 ms (allowed 150 ms), total time = 1589 ms
17-03-18 04:56:30.464 -07 000000447 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:30.494 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:56:30.494 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:30.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:30.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:30.494 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:30.494 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:30.494 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:30.494 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:30.494 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:30.494 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:30.504 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:30.504 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:30.514 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:56:30.514 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:56:30.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:30.564 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:30.844 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.945808,
17-03-18 04:56:30.864 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:30.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:30.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:30.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 04:56:30.904 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:30.904 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:30.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:56:30.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:56:30.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:30.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:56:30.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:56:31.004 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:31.004 -07 000000455 INF: Autofocus start
17-03-18 04:56:31.004 -07 000000455 INF: MeasureProfile start
17-03-18 04:56:31.004 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:31.014 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:31.014 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:31.014 -07 000000455 INF: MeasureProfile done
17-03-18 04:56:31.014 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:56:31.014 -07 000000455 INF: Autofocus finished
17-03-18 04:56:31.214 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:31.214 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:31.214 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177794353831329. ----------
17-03-18 04:56:31.214 -07 000000610 INF: Cycle	131	Tile	3	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:31.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37349, sync = True, waitForSettling = True)
17-03-18 04:56:31.224 -07 000000610 INF: Z Motor: Moving to -0.170973 mm, started at -0.177794 mm, distance = 6.82 um
17-03-18 04:56:31.224 -07 000000610 INF: FPGA: Xmit ZDACW 37349\n [Z Motor]
17-03-18 04:56:31.224 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:56:31.234 -07 000000610 INF: FPGA: 'ZDACW 37349' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:31.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:31.234 -07 000000512 INF: FPGA: Recv ZDACR 37349
17-03-18 04:56:31.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:31.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.394 -07 000000467 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:56:31.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:31.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:56:31.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.414 -07 000000579 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:56:31.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.424 -07 000000606 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:56:31.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.434 -07 000000512 INF: FPGA: Recv ZSGSRD 35905
17-03-18 04:56:31.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:56:31.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.454 -07 000000382 INF: FPGA: Recv ZSGSRD 35904
17-03-18 04:56:31.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.464 -07 000000447 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:56:31.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.474 -07 000000501 INF: FPGA: Recv ZSGSRD 35906
17-03-18 04:56:31.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:31.484 -07 000000618 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:56:31.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:31.494 -07 000000581 INF: FPGA: Recv ZPIEZORD 31734
17-03-18 04:56:31.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:31.504 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.2 V.
17-03-18 04:56:31.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35905 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35905 (-170.1 uncal um), StdDev = 1 (0.0 uncal um), Range = 3 (0.0 uncal um), Min = 35904 (-170.1 uncal um), Max = 35907 (-170.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 04:56:31.504 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35905, posNoise = 2, negNoise = 1
17-03-18 04:56:31.504 -07 000000610 INF: Z Motor: After move to -0.170973, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:31.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:56:31.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:31.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:31.504 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:31.504 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:31.504 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:31.504 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:31.504 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:31.504 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:31.504 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:56:31.504 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:31.504 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:31.504 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:31.514 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:31.514 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:31.514 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:31.514 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:31.524 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:56:31.524 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:56:31.524 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:56:31.524 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:56:31.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37526 150\n [Camera]
17-03-18 04:56:31.714 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:31.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:31.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:32.154 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:32.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:32.154 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:32.154 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:32.154 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2598567184, 0x0, 391868352) start.
17-03-18 04:56:32.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:32.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:32.154 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:32.154 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:32.154 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2633989448, 0x0, 418435064) start.
17-03-18 04:56:32.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37526 814
17-03-18 04:56:32.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:32.534 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2598567184, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:56:32.534 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:56:32.534 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:32.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2633989448, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:56:32.534 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:56:32.534 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:32.544 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:32.544 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:56:32.544 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:32.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:56:32.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:32.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:32.704 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:32.704 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:32.704 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:56:32.704 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:32.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:32.704 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:32.704 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:32.704 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:56:32.894 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:56:32.894 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:32.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37526 150' command took 2 ms to send, 1365 ms to get response, and 1369 ms overall
17-03-18 04:56:32.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:32.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.170984688961062. ------
17-03-18 04:56:32.904 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17720 mm
17-03-18 04:56:32.904 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:32.904 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:32.904 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:56:32.904 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:56:32.904 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38710, sync = True, waitForSettling = False)
17-03-18 04:56:32.904 -07 000000479 INF: Z Motor: Moving to -0.177203 mm, started at -0.170985 mm, distance = -6.22 um
17-03-18 04:56:32.904 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:32.914 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:32.914 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:32.914 -07 000000424 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:56:32.924 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:56:32.924 -07 000000569 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:32.924 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:32.924 -07 000000569 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:56:32.924 -07 000000479 INF: FPGA: Xmit ZDACW 38710\n [Z Motor]
17-03-18 04:56:32.924 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:56:32.934 -07 000000479 INF: FPGA: 'ZDACW 38710' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:56:32.934 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:32.944 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:32.954 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:32.954 -07 000000480 INF: FPGA: Recv ZDACR 38710
17-03-18 04:56:32.964 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:56:32.964 -07 000000479 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:56:33.094 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:56:33.094 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:56:33.094 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:33.094 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:33.094 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:56:33.094 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:56:33.094 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:33.104 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:56:33.104 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:56:33.104 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:56:33.134 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:33.134 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:56:33.314 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:56:33.314 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:56:33.364 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:33.364 -07 000000581 INF: FPGA: Recv YRDPOS 127783
17-03-18 04:56:33.374 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:56:33.374 -07 000000569 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:33.374 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:56:33.374 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 04:56:34.324 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:34.324 -07 000000424 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:56:34.334 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.334 -07 000000569 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:34.364 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:34.364 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:56:34.364 -07 000000569 INF: Y Motor: Moved to 62.3945 after 1457 ms (table move)
17-03-18 04:56:34.364 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177203 mm (DAC = 38710)
17-03-18 04:56:34.364 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.374 -07 000000467 INF: FPGA: Recv ZSGSRD 36871
17-03-18 04:56:34.374 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:56:34.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36877
17-03-18 04:56:34.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36873
17-03-18 04:56:34.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.394 -07 000000479 INF: FPGA: Recv ZSGSRD 36868
17-03-18 04:56:34.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.404 -07 000000626 INF: FPGA: Recv ZSGSRD 36869
17-03-18 04:56:34.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:56:34.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.424 -07 000000581 INF: FPGA: Recv ZSGSRD 36873
17-03-18 04:56:34.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.434 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.434 -07 000000512 INF: FPGA: Recv ZSGSRD 36877
17-03-18 04:56:34.444 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.444 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.444 -07 000000474 INF: FPGA: Recv ZSGSRD 36875
17-03-18 04:56:34.454 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.454 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:34.454 -07 000000480 INF: FPGA: Recv ZSGSRD 36874
17-03-18 04:56:34.464 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.464 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:34.464 -07 000000467 INF: FPGA: Recv ZPIEZORD 33044
17-03-18 04:56:34.474 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:34.474 -07 000000618 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.5 V.
17-03-18 04:56:34.474 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36873 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36874 (-176.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36868 (-176.3 uncal um), Max = 36877 (-176.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:56:34.474 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36873, posNoise = 4, negNoise = 5
17-03-18 04:56:34.474 -07 000000618 INF: Z Motor: After move to -0.177203, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:34.474 -07 000000618 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:56:34.474 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:34.524 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:56:34.524 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:34.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:34.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:34.524 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:34.524 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:34.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:34.524 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:34.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:56:34.524 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:34.534 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:34.534 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:34.534 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:56:34.534 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:56:34.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:34.584 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:34.884 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:34.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:34.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:35.004 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:35.004 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:35.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 459 ms to get response, and 467 ms overall
17-03-18 04:56:35.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2669411712, 0x0, 559484976) start.
17-03-18 04:56:35.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2669411712, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:56:35.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:35.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:56:35.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 238 ms.
17-03-18 04:56:35.204 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:35.204 -07 000000618 INF: Autofocus start
17-03-18 04:56:35.204 -07 000000618 INF: MeasureProfile start
17-03-18 04:56:35.204 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:35.214 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:35.214 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:35.214 -07 000000618 INF: MeasureProfile done
17-03-18 04:56:35.214 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:56:35.214 -07 000000618 INF: Autofocus finished
17-03-18 04:56:35.414 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:35.414 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:35.414 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177203326314287. ----------
17-03-18 04:56:35.414 -07 000000610 INF: Cycle	131	Tile	4	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:35.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37243, sync = True, waitForSettling = True)
17-03-18 04:56:35.424 -07 000000610 INF: Z Motor: Moving to -0.170488 mm, started at -0.177203 mm, distance = 6.72 um
17-03-18 04:56:35.424 -07 000000610 INF: FPGA: Xmit ZDACW 37243\n [Z Motor]
17-03-18 04:56:35.424 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:56:35.434 -07 000000610 INF: FPGA: 'ZDACW 37243' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:35.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:35.434 -07 000000467 INF: FPGA: Recv ZDACR 37243
17-03-18 04:56:35.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:35.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.594 -07 000000608 INF: FPGA: Recv ZSGSRD 35833
17-03-18 04:56:35.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:35.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35827
17-03-18 04:56:35.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.614 -07 000000502 INF: FPGA: Recv ZSGSRD 35831
17-03-18 04:56:35.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:35.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.624 -07 000000474 INF: FPGA: Recv ZSGSRD 35831
17-03-18 04:56:35.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:35.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.634 -07 000000502 INF: FPGA: Recv ZSGSRD 35832
17-03-18 04:56:35.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.644 -07 000000424 INF: FPGA: Recv ZSGSRD 35829
17-03-18 04:56:35.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.654 -07 000000608 INF: FPGA: Recv ZSGSRD 35825
17-03-18 04:56:35.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.664 -07 000000480 INF: FPGA: Recv ZSGSRD 35835
17-03-18 04:56:35.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.674 -07 000000455 INF: FPGA: Recv ZSGSRD 35832
17-03-18 04:56:35.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:35.684 -07 000000461 INF: FPGA: Recv ZSGSRD 35822
17-03-18 04:56:35.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:35.694 -07 000000455 INF: FPGA: Recv ZPIEZORD 31631
17-03-18 04:56:35.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:35.704 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.3 V.
17-03-18 04:56:35.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35830 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35831 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35822 (-169.6 uncal um), Max = 35835 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:56:35.704 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35830, posNoise = 5, negNoise = 8
17-03-18 04:56:35.704 -07 000000610 INF: Z Motor: After move to -0.170488, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:35.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:56:35.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:35.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:35.704 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:35.704 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:35.704 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:35.704 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:35.704 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:35.704 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:35.704 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:35.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:35.704 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:35.704 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:35.714 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:35.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:35.714 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:35.714 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:35.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:56:35.714 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:56:35.724 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:56:35.724 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:56:35.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37419 150\n [Camera]
17-03-18 04:56:35.924 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:36.204 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.983999,
17-03-18 04:56:36.354 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:36.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:36.354 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:36.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:36.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:36.354 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:36.364 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:36.364 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:56:36.364 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:36.364 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:56:36.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37419 814
17-03-18 04:56:36.694 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:36.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:36.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:56:36.764 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:56:36.764 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:56:36.764 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:36.764 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:56:36.764 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:36.764 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:36.764 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:56:36.764 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:36.774 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:56:36.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:36.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:36.904 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:36.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:36.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:36.904 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:36.904 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:36.904 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:56:37.024 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:37.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) start.
17-03-18 04:56:37.094 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:56:37.094 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:37.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37419 150' command took 2 ms to send, 1366 ms to get response, and 1370 ms overall
17-03-18 04:56:37.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:37.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.17050287305043. ------
17-03-18 04:56:37.104 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17711 mm
17-03-18 04:56:37.104 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:37.104 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:37.104 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:56:37.104 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:56:37.104 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38689, sync = True, waitForSettling = False)
17-03-18 04:56:37.104 -07 000000626 INF: Z Motor: Moving to -0.177107 mm, started at -0.170503 mm, distance = -6.60 um
17-03-18 04:56:37.104 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:37.114 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:56:37.114 -07 000000626 INF: FPGA: Xmit ZDACW 38689\n [Z Motor]
17-03-18 04:56:37.114 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:56:37.124 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:37.124 -07 000000626 INF: FPGA: 'ZDACW 38689' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:56:37.124 -07 000000512 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:56:37.134 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:37.134 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:56:37.134 -07 000000502 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:37.134 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:37.134 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-18 04:56:37.144 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:37.144 -07 000000512 INF: FPGA: Recv ZDACR 38689
17-03-18 04:56:37.154 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:56:37.154 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:56:37.154 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:37.334 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:37.334 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:56:37.414 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 508 ms.
17-03-18 04:56:37.414 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 04:56:37.414 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:37.424 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:37.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:56:37.424 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:56:37.424 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:37.424 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:37.424 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 04:56:37.424 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 04:56:37.534 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:56:37.534 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 04:56:37.584 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:37.584 -07 000000608 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:56:37.594 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:37.594 -07 000000502 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:37.594 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:56:37.594 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.838 mm, average velocity = 2.090 mm/sec
17-03-18 04:56:38.544 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:38.544 -07 000000424 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:56:38.554 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:38.554 -07 000000502 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:38.584 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:38.584 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:56:38.584 -07 000000502 INF: Y Motor: Moved to 63.2227 after 1476 ms (table move)
17-03-18 04:56:38.584 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177107 mm (DAC = 38689)
17-03-18 04:56:38.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.584 -07 000000447 INF: FPGA: Recv ZSGSRD 36861
17-03-18 04:56:38.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:38.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.594 -07 000000512 INF: FPGA: Recv ZSGSRD 36857
17-03-18 04:56:38.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.604 -07 000000480 INF: FPGA: Recv ZSGSRD 36853
17-03-18 04:56:38.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.614 -07 000000606 INF: FPGA: Recv ZSGSRD 36860
17-03-18 04:56:38.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.624 -07 000000608 INF: FPGA: Recv ZSGSRD 36858
17-03-18 04:56:38.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.634 -07 000000480 INF: FPGA: Recv ZSGSRD 36859
17-03-18 04:56:38.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36859
17-03-18 04:56:38.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.654 -07 000000447 INF: FPGA: Recv ZSGSRD 36862
17-03-18 04:56:38.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.664 -07 000000474 INF: FPGA: Recv ZSGSRD 36862
17-03-18 04:56:38.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.674 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:38.674 -07 000000625 INF: FPGA: Recv ZSGSRD 36858
17-03-18 04:56:38.684 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.684 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:38.684 -07 000000502 INF: FPGA: Recv ZPIEZORD 32993
17-03-18 04:56:38.694 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:38.694 -07 000000569 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.6 V.
17-03-18 04:56:38.694 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36859 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36859 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36853 (-176.2 uncal um), Max = 36862 (-176.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:56:38.694 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36859, posNoise = 3, negNoise = 6
17-03-18 04:56:38.694 -07 000000569 INF: Z Motor: After move to -0.177107, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:38.694 -07 000000569 INF: Z Motor: Settle wait time = 1480 ms, measure time = 105 ms (allowed 150 ms), total time = 1585 ms
17-03-18 04:56:38.694 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:38.744 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 04:56:38.744 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:38.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:38.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:38.744 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:38.744 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:38.744 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:38.744 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:38.744 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:56:38.744 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:38.754 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:38.754 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:38.764 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:56:38.764 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:56:38.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:38.814 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:39.114 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:39.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:39.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:39.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 04:56:39.144 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:39.154 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:39.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:56:39.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:56:39.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:39.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:56:39.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:56:39.254 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:39.254 -07 000000480 INF: Autofocus start
17-03-18 04:56:39.254 -07 000000480 INF: MeasureProfile start
17-03-18 04:56:39.254 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:39.264 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:39.264 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:39.264 -07 000000480 INF: MeasureProfile done
17-03-18 04:56:39.264 -07 000000480 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:56:39.264 -07 000000480 INF: Autofocus finished
17-03-18 04:56:39.464 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:39.464 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:39.464 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.177113387344302. ----------
17-03-18 04:56:39.464 -07 000000610 INF: Cycle	131	Tile	5	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:39.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37169, sync = True, waitForSettling = True)
17-03-18 04:56:39.474 -07 000000610 INF: Z Motor: Moving to -0.170149 mm, started at -0.177113 mm, distance = 6.96 um
17-03-18 04:56:39.474 -07 000000610 INF: FPGA: Xmit ZDACW 37169\n [Z Motor]
17-03-18 04:56:39.474 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:56:39.484 -07 000000610 INF: FPGA: 'ZDACW 37169' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:39.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:39.484 -07 000000608 INF: FPGA: Recv ZDACR 37169
17-03-18 04:56:39.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:39.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35778
17-03-18 04:56:39.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:39.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35783
17-03-18 04:56:39.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.664 -07 000000502 INF: FPGA: Recv ZSGSRD 35776
17-03-18 04:56:39.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35775
17-03-18 04:56:39.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.684 -07 000000479 INF: FPGA: Recv ZSGSRD 35777
17-03-18 04:56:39.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.694 -07 000000579 INF: FPGA: Recv ZSGSRD 35772
17-03-18 04:56:39.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.704 -07 000000480 INF: FPGA: Recv ZSGSRD 35778
17-03-18 04:56:39.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.714 -07 000000501 INF: FPGA: Recv ZSGSRD 35781
17-03-18 04:56:39.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.724 -07 000000625 INF: FPGA: Recv ZSGSRD 35776
17-03-18 04:56:39.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:39.734 -07 000000474 INF: FPGA: Recv ZSGSRD 35776
17-03-18 04:56:39.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:39.744 -07 000000581 INF: FPGA: Recv ZPIEZORD 31552
17-03-18 04:56:39.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:39.754 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.3 V.
17-03-18 04:56:39.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35777 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35776 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35772 (-169.3 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:56:39.754 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35777, posNoise = 6, negNoise = 5
17-03-18 04:56:39.754 -07 000000610 INF: Z Motor: After move to -0.170149, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:39.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:56:39.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:39.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:39.754 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:39.754 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:39.754 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:39.754 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:39.754 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:39.754 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:39.754 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:39.754 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:39.754 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:39.754 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:39.764 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:39.764 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:39.764 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:39.764 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:39.774 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:56:39.774 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:56:39.774 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:56:39.774 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:56:39.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37346 150\n [Camera]
17-03-18 04:56:39.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:40.404 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:40.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:40.404 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:40.404 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:40.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:56:40.404 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:40.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:40.404 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:40.414 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:40.414 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:56:40.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37346 814
17-03-18 04:56:40.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:40.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:56:40.794 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:56:40.794 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:40.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:56:40.794 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:56:40.794 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:40.794 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:40.794 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:56:40.794 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:56:40.804 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:56:40.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:40.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:40.954 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:40.954 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:40.954 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:56:40.954 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:40.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:40.954 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:40.954 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:40.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:56:41.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:56:41.144 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:41.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37346 150' command took 2 ms to send, 1366 ms to get response, and 1369 ms overall
17-03-18 04:56:41.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:41.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170162389806917. ------
17-03-18 04:56:41.154 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17658 mm
17-03-18 04:56:41.154 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:41.154 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:41.154 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:56:41.154 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 04:56:41.154 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38573, sync = True, waitForSettling = False)
17-03-18 04:56:41.154 -07 000000581 INF: Z Motor: Moving to -0.176576 mm, started at -0.170162 mm, distance = -6.41 um
17-03-18 04:56:41.154 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:41.164 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:56:41.174 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:41.174 -07 000000474 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:56:41.184 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:56:41.184 -07 000000581 INF: FPGA: Xmit ZDACW 38573\n [Z Motor]
17-03-18 04:56:41.184 -07 000000502 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:41.184 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:41.184 -07 000000502 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:56:41.184 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:56:41.194 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:41.194 -07 000000581 INF: FPGA: 'ZDACW 38573' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:56:41.214 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:41.224 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:41.224 -07 000000467 INF: FPGA: Recv ZDACR 38573
17-03-18 04:56:41.234 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:56:41.234 -07 000000581 INF: Z Motor: MoveAbsStepped took 73 ms (did NOT wait for settling yet))
17-03-18 04:56:41.354 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:56:41.354 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:56:41.354 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:41.354 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:56:41.354 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:56:41.354 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:41.364 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:41.364 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:41.364 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:56:41.364 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:56:41.394 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:41.394 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:56:41.564 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.014009,
17-03-18 04:56:41.584 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:56:41.584 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 04:56:41.634 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:41.644 -07 000000625 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:56:41.644 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:56:41.644 -07 000000502 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:41.644 -07 000000502 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:56:41.644 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.840 mm, average velocity = 2.064 mm/sec
17-03-18 04:56:41.714 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:42.594 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:42.594 -07 000000501 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:56:42.604 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:42.604 -07 000000502 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:42.624 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:42.624 -07 000000502 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:56:42.624 -07 000000502 INF: Y Motor: Moved to 64.0557 after 1473 ms (table move)
17-03-18 04:56:42.634 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176576 mm (DAC = 38573)
17-03-18 04:56:42.634 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.634 -07 000000474 INF: FPGA: Recv ZSGSRD 36780
17-03-18 04:56:42.644 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:56:42.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.644 -07 000000501 INF: FPGA: Recv ZSGSRD 36779
17-03-18 04:56:42.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.654 -07 000000424 INF: FPGA: Recv ZSGSRD 36775
17-03-18 04:56:42.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.664 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.664 -07 000000455 INF: FPGA: Recv ZSGSRD 36776
17-03-18 04:56:42.674 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.674 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.674 -07 000000502 INF: FPGA: Recv ZSGSRD 36774
17-03-18 04:56:42.684 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.684 -07 000000461 INF: FPGA: Recv ZSGSRD 36775
17-03-18 04:56:42.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.694 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.694 -07 000000606 INF: FPGA: Recv ZSGSRD 36774
17-03-18 04:56:42.704 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.704 -07 000000501 INF: FPGA: Recv ZSGSRD 36776
17-03-18 04:56:42.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.714 -07 000000455 INF: FPGA: Recv ZSGSRD 36781
17-03-18 04:56:42.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:42.724 -07 000000447 INF: FPGA: Recv ZSGSRD 36780
17-03-18 04:56:42.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.734 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:42.734 -07 000000424 INF: FPGA: Recv ZPIEZORD 32886
17-03-18 04:56:42.744 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:42.744 -07 000000579 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.886 V. Piezo Error = -8.6 V.
17-03-18 04:56:42.744 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36777 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36776 (-175.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36774 (-175.7 uncal um), Max = 36781 (-175.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:56:42.744 -07 000000579 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36777, posNoise = 4, negNoise = 3
17-03-18 04:56:42.744 -07 000000579 INF: Z Motor: After move to -0.176576, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:42.744 -07 000000579 INF: Z Motor: Settle wait time = 1475 ms, measure time = 108 ms (allowed 150 ms), total time = 1583 ms
17-03-18 04:56:42.744 -07 000000579 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:42.794 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 04:56:42.794 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:42.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:42.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:42.794 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:42.794 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:42.794 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:42.794 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:42.794 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:42.794 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:42.804 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:42.804 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:42.814 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:56:42.814 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:56:42.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:42.864 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:43.164 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:43.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:43.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:43.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:56:43.204 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:43.204 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:43.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:56:43.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:56:43.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:43.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:56:43.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:56:43.304 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:43.304 -07 000000447 INF: Autofocus start
17-03-18 04:56:43.304 -07 000000447 INF: MeasureProfile start
17-03-18 04:56:43.304 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:43.314 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:43.314 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:43.314 -07 000000447 INF: MeasureProfile done
17-03-18 04:56:43.314 -07 000000447 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 04:56:43.314 -07 000000447 INF: Autofocus finished
17-03-18 04:56:43.514 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:43.514 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 04:56:43.514 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176586601948678. ----------
17-03-18 04:56:43.514 -07 000000610 INF: Cycle	131	Tile	6	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:43.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37016, sync = True, waitForSettling = True)
17-03-18 04:56:43.524 -07 000000610 INF: Z Motor: Moving to -0.169448 mm, started at -0.176587 mm, distance = 7.14 um
17-03-18 04:56:43.524 -07 000000610 INF: FPGA: Xmit ZDACW 37016\n [Z Motor]
17-03-18 04:56:43.524 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:56:43.534 -07 000000610 INF: FPGA: 'ZDACW 37016' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:43.534 -07 000000501 INF: FPGA: Recv ZDACR 37016
17-03-18 04:56:43.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:43.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.694 -07 000000625 INF: FPGA: Recv ZSGSRD 35663
17-03-18 04:56:43.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:43.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.704 -07 000000474 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:56:43.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.714 -07 000000455 INF: FPGA: Recv ZSGSRD 35675
17-03-18 04:56:43.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.724 -07 000000424 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:56:43.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.734 -07 000000479 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:56:43.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.744 -07 000000618 INF: FPGA: Recv ZSGSRD 35673
17-03-18 04:56:43.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35663
17-03-18 04:56:43.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.764 -07 000000581 INF: FPGA: Recv ZSGSRD 35666
17-03-18 04:56:43.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.774 -07 000000480 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:56:43.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:43.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35662
17-03-18 04:56:43.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:43.794 -07 000000447 INF: FPGA: Recv ZPIEZORD 31393
17-03-18 04:56:43.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:43.804 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.4 V.
17-03-18 04:56:43.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35666 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35665 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35662 (-168.6 uncal um), Max = 35675 (-168.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:43.804 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35666, posNoise = 9, negNoise = 4
17-03-18 04:56:43.804 -07 000000610 INF: Z Motor: After move to -0.169448, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:43.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:56:43.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:43.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:43.804 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:43.804 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:43.804 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:43.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:43.804 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:43.804 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:43.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:43.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:43.804 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:56:43.804 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:43.814 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:43.814 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:43.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:43.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:43.814 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:56:43.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:56:43.814 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:56:43.814 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:56:43.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37193 150\n [Camera]
17-03-18 04:56:44.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:44.454 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:44.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:44.454 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:44.454 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:44.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:56:44.454 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:44.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:44.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:44.454 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:44.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:56:44.644 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37193 814
17-03-18 04:56:44.794 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:44.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:56:44.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:56:44.844 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:44.844 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:44.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:56:44.844 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:56:44.844 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:56:44.844 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:44.844 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:44.854 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:56:45.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:45.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:45.004 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:45.004 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:45.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:56:45.004 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:45.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:45.004 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:45.004 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:45.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:56:45.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:56:45.194 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:45.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37193 150' command took 2 ms to send, 1364 ms to get response, and 1369 ms overall
17-03-18 04:56:45.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:45.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169449302259181. ------
17-03-18 04:56:45.204 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:45.204 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17572 mm
17-03-18 04:56:45.204 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:45.204 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:45.204 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:56:45.204 -07 000000474 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:56:45.204 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38387, sync = True, waitForSettling = False)
17-03-18 04:56:45.204 -07 000000625 INF: Z Motor: Moving to -0.175724 mm, started at -0.169449 mm, distance = -6.28 um
17-03-18 04:56:45.214 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:56:45.214 -07 000000625 INF: FPGA: Xmit ZDACW 38387\n [Z Motor]
17-03-18 04:56:45.214 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:56:45.224 -07 000000625 INF: FPGA: 'ZDACW 38387' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:56:45.224 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:45.224 -07 000000569 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:56:45.234 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:45.234 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:56:45.234 -07 000000474 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:45.234 -07 000000474 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:45.234 -07 000000474 INF: Y Motor: Moving 1339 steps-14
17-03-18 04:56:45.244 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:45.244 -07 000000480 INF: FPGA: Recv ZDACR 38387
17-03-18 04:56:45.254 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:56:45.254 -07 000000625 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:56:45.254 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:45.384 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:56:45.384 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:56:45.384 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:45.384 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:56:45.384 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:56:45.384 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:45.394 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:45.394 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:56:45.394 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:56:45.394 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:56:45.434 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:45.434 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 04:56:45.624 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:56:45.624 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:56:45.674 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:45.684 -07 000000626 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:56:45.684 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:56:45.684 -07 000000474 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:45.684 -07 000000474 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:56:45.684 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 04:56:46.634 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:46.634 -07 000000480 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:56:46.644 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.644 -07 000000474 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:46.674 -07 000000474 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:46.674 -07 000000474 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:56:46.674 -07 000000474 INF: Y Motor: Moved to 64.8774 after 1463 ms (table move)
17-03-18 04:56:46.674 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175724 mm (DAC = 38387)
17-03-18 04:56:46.674 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.674 -07 000000480 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:56:46.684 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:46.684 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.684 -07 000000579 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:46.694 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.694 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.694 -07 000000474 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:46.704 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.704 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.704 -07 000000480 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:56:46.714 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.714 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.714 -07 000000579 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:46.714 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:46.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:46.724 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.724 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.724 -07 000000618 INF: FPGA: Recv ZSGSRD 36641
17-03-18 04:56:46.734 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.734 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.734 -07 000000480 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:46.744 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.744 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.744 -07 000000382 INF: FPGA: Recv ZSGSRD 36637
17-03-18 04:56:46.754 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.754 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.754 -07 000000581 INF: FPGA: Recv ZSGSRD 36648
17-03-18 04:56:46.764 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.764 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:46.764 -07 000000461 INF: FPGA: Recv ZSGSRD 36647
17-03-18 04:56:46.774 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.774 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:46.774 -07 000000447 INF: FPGA: Recv ZPIEZORD 32691
17-03-18 04:56:46.784 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:46.784 -07 000000608 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.7 V.
17-03-18 04:56:46.784 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36646 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36645 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36637 (-174.8 uncal um), Max = 36651 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:56:46.784 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36646, posNoise = 5, negNoise = 9
17-03-18 04:56:46.784 -07 000000608 INF: Z Motor: After move to -0.175724, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:46.784 -07 000000608 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:56:46.784 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:46.834 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:56:46.834 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:46.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:46.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:46.834 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:46.834 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:46.834 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:46.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:46.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:56:46.834 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:46.844 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:46.844 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:46.844 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:56:46.844 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:56:46.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:46.894 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:46.924 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.012614,
17-03-18 04:56:47.194 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:47.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:47.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:47.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-18 04:56:47.234 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:47.234 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:47.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 04:56:47.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:56:47.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:47.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:56:47.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:56:47.334 -07 000000479 INF: Autofocus start
17-03-18 04:56:47.334 -07 000000479 INF: MeasureProfile start
17-03-18 04:56:47.334 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:47.344 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:47.344 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 04:56:47.344 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:47.344 -07 000000479 INF: MeasureProfile done
17-03-18 04:56:47.344 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:56:47.344 -07 000000479 INF: Autofocus finished
17-03-18 04:56:47.544 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:47.544 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 04:56:47.564 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175745030158107. ----------
17-03-18 04:56:47.564 -07 000000610 INF: Cycle	131	Tile	7	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:47.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36919, sync = True, waitForSettling = True)
17-03-18 04:56:47.564 -07 000000610 INF: Z Motor: Moving to -0.169004 mm, started at -0.175745 mm, distance = 6.74 um
17-03-18 04:56:47.564 -07 000000610 INF: FPGA: Xmit ZDACW 36919\n [Z Motor]
17-03-18 04:56:47.564 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:56:47.574 -07 000000610 INF: FPGA: 'ZDACW 36919' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:56:47.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:47.574 -07 000000447 INF: FPGA: Recv ZDACR 36919
17-03-18 04:56:47.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:47.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.734 -07 000000608 INF: FPGA: Recv ZSGSRD 35594
17-03-18 04:56:47.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:47.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.744 -07 000000479 INF: FPGA: Recv ZSGSRD 35600
17-03-18 04:56:47.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35597
17-03-18 04:56:47.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.764 -07 000000455 INF: FPGA: Recv ZSGSRD 35595
17-03-18 04:56:47.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.774 -07 000000579 INF: FPGA: Recv ZSGSRD 35597
17-03-18 04:56:47.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.784 -07 000000474 INF: FPGA: Recv ZSGSRD 35605
17-03-18 04:56:47.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.794 -07 000000382 INF: FPGA: Recv ZSGSRD 35596
17-03-18 04:56:47.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.804 -07 000000581 INF: FPGA: Recv ZSGSRD 35593
17-03-18 04:56:47.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.814 -07 000000618 INF: FPGA: Recv ZSGSRD 35595
17-03-18 04:56:47.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:47.824 -07 000000447 INF: FPGA: Recv ZSGSRD 35597
17-03-18 04:56:47.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:47.834 -07 000000608 INF: FPGA: Recv ZPIEZORD 31304
17-03-18 04:56:47.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:47.844 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.5 V.
17-03-18 04:56:47.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35597 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35593 (-168.1 uncal um), Max = 35605 (-168.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:47.844 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35597, posNoise = 8, negNoise = 4
17-03-18 04:56:47.844 -07 000000610 INF: Z Motor: After move to -0.169004, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:47.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 04:56:47.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:47.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:47.844 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:47.844 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:47.844 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:47.844 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:47.844 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:47.844 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:47.844 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:47.844 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:47.844 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:47.844 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:47.854 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:47.854 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:56:47.854 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:47.854 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:47.864 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:56:47.864 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:56:47.864 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:56:47.864 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:56:47.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37096 150\n [Camera]
17-03-18 04:56:48.064 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:48.494 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:48.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:48.494 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:48.494 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:48.494 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:56:48.494 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:48.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:48.494 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:48.494 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:48.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:56:48.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37096 814
17-03-18 04:56:48.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:48.874 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:56:48.874 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:56:48.874 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:48.884 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:48.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:56:48.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:56:48.884 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:48.884 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:48.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:56:48.884 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:56:49.044 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-18 04:56:49.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-18 04:56:49.044 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:49.044 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:49.044 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 04:56:49.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-18 04:56:49.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-18 04:56:49.044 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:49.044 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:49.044 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 04:56:49.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1364
17-03-18 04:56:49.234 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:49.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37096 150' command took 2 ms to send, 1366 ms to get response, and 1371 ms overall
17-03-18 04:56:49.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:49.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.1690060316214. ------
17-03-18 04:56:49.244 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:49.244 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17574 mm
17-03-18 04:56:49.244 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:49.244 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:49.244 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:56:49.244 -07 000000474 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 04:56:49.244 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38391, sync = True, waitForSettling = False)
17-03-18 04:56:49.244 -07 000000461 INF: Z Motor: Moving to -0.175743 mm, started at -0.169006 mm, distance = -6.74 um
17-03-18 04:56:49.254 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:56:49.254 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:49.254 -07 000000480 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:56:49.264 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:56:49.264 -07 000000474 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:49.264 -07 000000474 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:49.264 -07 000000474 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:56:49.264 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:49.274 -07 000000461 INF: FPGA: Xmit ZDACW 38391\n [Z Motor]
17-03-18 04:56:49.274 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:56:49.284 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:49.284 -07 000000461 INF: FPGA: 'ZDACW 38391' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 04:56:49.294 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:49.294 -07 000000625 INF: FPGA: Recv ZDACR 38391
17-03-18 04:56:49.304 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:56:49.304 -07 000000461 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:56:49.454 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:56:49.454 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:56:49.454 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:49.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:56:49.454 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:56:49.454 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:49.454 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:56:49.454 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:56:49.454 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:56:49.464 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:56:49.464 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:49.464 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:56:49.654 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:56:49.664 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 04:56:49.714 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:49.714 -07 000000455 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:56:49.724 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:49.724 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:49.724 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:56:49.724 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.113 mm/sec
17-03-18 04:56:50.674 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:50.674 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:56:50.684 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.684 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:50.714 -07 000000474 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:50.714 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:56:50.714 -07 000000474 INF: Y Motor: Moved to 65.7129 after 1471 ms (table move)
17-03-18 04:56:50.724 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175743 mm (DAC = 38391)
17-03-18 04:56:50.724 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.724 -07 000000447 INF: FPGA: Recv ZSGSRD 36642
17-03-18 04:56:50.734 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:50.734 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.734 -07 000000501 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:50.744 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.744 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.744 -07 000000625 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:56:50.754 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.754 -07 000000569 INF: FPGA: Recv ZSGSRD 36641
17-03-18 04:56:50.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.764 -07 000000382 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:50.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.774 -07 000000461 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:50.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.784 -07 000000618 INF: FPGA: Recv ZSGSRD 36650
17-03-18 04:56:50.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.794 -07 000000606 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:56:50.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.804 -07 000000479 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:56:50.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:50.814 -07 000000512 INF: FPGA: Recv ZSGSRD 36645
17-03-18 04:56:50.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.824 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:50.824 -07 000000581 INF: FPGA: Recv ZPIEZORD 32726
17-03-18 04:56:50.834 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:50.834 -07 000000467 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.7 V.
17-03-18 04:56:50.834 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36645 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36645 (-174.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36641 (-174.8 uncal um), Max = 36651 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:50.834 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36645, posNoise = 6, negNoise = 4
17-03-18 04:56:50.834 -07 000000467 INF: Z Motor: After move to -0.175743, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:50.834 -07 000000467 INF: Z Motor: Settle wait time = 1474 ms, measure time = 108 ms (allowed 150 ms), total time = 1582 ms
17-03-18 04:56:50.834 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:50.884 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 04:56:50.884 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:50.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:50.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:50.884 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:50.884 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:50.884 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:50.884 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:50.884 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:50.884 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:50.894 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:56:50.894 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:50.904 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:56:50.904 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:56:50.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:50.954 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:51.254 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:51.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:51.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:51.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 04:56:51.294 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:51.294 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:51.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:56:51.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 04:56:51.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:51.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:56:51.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 04:56:51.394 -07 000000467 INF: Autofocus start
17-03-18 04:56:51.394 -07 000000467 INF: MeasureProfile start
17-03-18 04:56:51.394 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:51.394 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:51.404 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:51.404 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:51.404 -07 000000467 INF: MeasureProfile done
17-03-18 04:56:51.404 -07 000000467 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:56:51.404 -07 000000467 INF: Autofocus finished
17-03-18 04:56:51.604 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:51.604 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:51.604 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175738605945965. ----------
17-03-18 04:56:51.604 -07 000000610 INF: Cycle	131	Tile	8	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:51.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36871, sync = True, waitForSettling = True)
17-03-18 04:56:51.614 -07 000000610 INF: Z Motor: Moving to -0.168785 mm, started at -0.175739 mm, distance = 6.95 um
17-03-18 04:56:51.614 -07 000000610 INF: FPGA: Xmit ZDACW 36871\n [Z Motor]
17-03-18 04:56:51.614 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:56:51.624 -07 000000610 INF: FPGA: 'ZDACW 36871' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:51.624 -07 000000626 INF: FPGA: Recv ZDACR 36871
17-03-18 04:56:51.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:51.714 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:51.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.784 -07 000000479 INF: FPGA: Recv ZSGSRD 35561
17-03-18 04:56:51.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:51.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.794 -07 000000606 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:56:51.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.804 -07 000000474 INF: FPGA: Recv ZSGSRD 35566
17-03-18 04:56:51.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.814 -07 000000579 INF: FPGA: Recv ZSGSRD 35564
17-03-18 04:56:51.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.824 -07 000000502 INF: FPGA: Recv ZSGSRD 35561
17-03-18 04:56:51.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.834 -07 000000479 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:56:51.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.844 -07 000000606 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:56:51.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.854 -07 000000455 INF: FPGA: Recv ZSGSRD 35557
17-03-18 04:56:51.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.864 -07 000000618 INF: FPGA: Recv ZSGSRD 35564
17-03-18 04:56:51.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:51.874 -07 000000502 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:56:51.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:51.884 -07 000000479 INF: FPGA: Recv ZPIEZORD 31294
17-03-18 04:56:51.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:51.894 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.4 V.
17-03-18 04:56:51.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35557 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:56:51.894 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 12, negNoise = 7
17-03-18 04:56:51.894 -07 000000610 INF: Z Motor: After move to -0.168785, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:51.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:56:51.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:51.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:51.894 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:51.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:51.894 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:51.894 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:51.894 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:51.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:56:51.894 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:56:51.894 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:51.894 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:51.894 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:51.904 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:51.904 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:51.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:56:51.904 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:51.914 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:56:51.914 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:56:51.914 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:56:51.914 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:56:51.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37048 150\n [Camera]
17-03-18 04:56:52.114 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:52.294 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.971733,
17-03-18 04:56:52.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:52.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:52.544 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:52.544 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:52.544 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:56:52.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:52.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:52.554 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:52.554 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:52.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:56:52.744 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37048 814
17-03-18 04:56:52.884 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:52.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:56:52.934 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:56:52.934 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:52.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:56:52.934 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:56:52.934 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:52.934 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:52.934 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:56:52.934 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:56:52.944 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:56:53.094 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:53.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:53.094 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:53.094 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:53.094 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:56:53.094 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:53.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:53.104 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:53.104 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:53.104 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:56:53.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:56:53.284 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:53.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37048 150' command took 2 ms to send, 1358 ms to get response, and 1369 ms overall
17-03-18 04:56:53.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:53.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168794032620722. ------
17-03-18 04:56:53.294 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:53.294 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17523 mm
17-03-18 04:56:53.294 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:53.294 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:53.294 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:56:53.294 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:56:53.294 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38279, sync = True, waitForSettling = False)
17-03-18 04:56:53.294 -07 000000606 INF: Z Motor: Moving to -0.175230 mm, started at -0.168794 mm, distance = -6.44 um
17-03-18 04:56:53.304 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:56:53.304 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:53.304 -07 000000461 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:56:53.314 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:53.314 -07 000000382 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:53.314 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:53.314 -07 000000382 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:56:53.314 -07 000000606 INF: FPGA: Xmit ZDACW 38279\n [Z Motor]
17-03-18 04:56:53.314 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:56:53.324 -07 000000606 INF: FPGA: 'ZDACW 38279' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:56:53.324 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:53.334 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:53.344 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:53.344 -07 000000424 INF: FPGA: Recv ZDACR 38279
17-03-18 04:56:53.354 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:56:53.354 -07 000000606 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:56:53.474 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:56:53.474 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:56:53.474 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:53.484 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:56:53.484 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:56:53.484 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:53.484 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:53.494 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:56:53.494 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:56:53.494 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:56:53.524 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:53.524 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:56:53.714 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:56:53.714 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 04:56:53.764 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:53.764 -07 000000581 INF: FPGA: Recv YRDPOS 136269
17-03-18 04:56:53.774 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:56:53.774 -07 000000382 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:53.774 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:56:53.774 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.094 mm/sec
17-03-18 04:56:54.724 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:54.724 -07 000000618 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:56:54.734 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.734 -07 000000382 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:54.764 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:54.764 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:56:54.764 -07 000000382 INF: Y Motor: Moved to 66.5381 after 1466 ms (table move)
17-03-18 04:56:54.764 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175230 mm (DAC = 38279)
17-03-18 04:56:54.764 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36574
17-03-18 04:56:54.774 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:56:54.774 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.774 -07 000000461 INF: FPGA: Recv ZSGSRD 36566
17-03-18 04:56:54.784 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:54.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.784 -07 000000618 INF: FPGA: Recv ZSGSRD 36566
17-03-18 04:56:54.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.794 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.794 -07 000000479 INF: FPGA: Recv ZSGSRD 36564
17-03-18 04:56:54.804 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.804 -07 000000626 INF: FPGA: Recv ZSGSRD 36569
17-03-18 04:56:54.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.814 -07 000000579 INF: FPGA: Recv ZSGSRD 36574
17-03-18 04:56:54.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.824 -07 000000455 INF: FPGA: Recv ZSGSRD 36566
17-03-18 04:56:54.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.834 -07 000000467 INF: FPGA: Recv ZSGSRD 36565
17-03-18 04:56:54.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.844 -07 000000618 INF: FPGA: Recv ZSGSRD 36565
17-03-18 04:56:54.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.854 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:54.854 -07 000000501 INF: FPGA: Recv ZSGSRD 36563
17-03-18 04:56:54.864 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.864 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:54.864 -07 000000618 INF: FPGA: Recv ZPIEZORD 32634
17-03-18 04:56:54.874 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:54.874 -07 000000569 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.7 V.
17-03-18 04:56:54.874 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36567 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36566 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36563 (-174.3 uncal um), Max = 36574 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:54.874 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36567, posNoise = 7, negNoise = 4
17-03-18 04:56:54.874 -07 000000569 INF: Z Motor: After move to -0.175230, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:54.874 -07 000000569 INF: Z Motor: Settle wait time = 1469 ms, measure time = 102 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:56:54.874 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:54.924 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:56:54.924 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:54.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:54.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:54.924 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:54.924 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:54.924 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:54.924 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:54.924 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:54.924 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:54.934 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:54.934 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:54.944 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:56:54.944 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:56:54.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:54.994 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:56:55.284 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:56:55.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:56:55.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:55.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) start.
17-03-18 04:56:55.324 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:55.334 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:55.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:56:55.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:56:55.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:55.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:56:55.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:56:55.434 -07 000000512 INF: Autofocus start
17-03-18 04:56:55.434 -07 000000512 INF: MeasureProfile start
17-03-18 04:56:55.434 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:55.434 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:55.444 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:55.444 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:55.444 -07 000000512 INF: MeasureProfile done
17-03-18 04:56:55.444 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:56:55.444 -07 000000512 INF: Autofocus finished
17-03-18 04:56:55.644 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:55.644 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:56:55.654 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175237517398908. ----------
17-03-18 04:56:55.654 -07 000000610 INF: Cycle	131	Tile	9	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:55.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36812, sync = True, waitForSettling = True)
17-03-18 04:56:55.654 -07 000000610 INF: Z Motor: Moving to -0.168515 mm, started at -0.175238 mm, distance = 6.72 um
17-03-18 04:56:55.654 -07 000000610 INF: FPGA: Xmit ZDACW 36812\n [Z Motor]
17-03-18 04:56:55.654 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:56:55.664 -07 000000610 INF: FPGA: 'ZDACW 36812' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:56:55.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:55.664 -07 000000608 INF: FPGA: Recv ZDACR 36812
17-03-18 04:56:55.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.824 -07 000000447 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:56:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:55.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.834 -07 000000626 INF: FPGA: Recv ZSGSRD 35529
17-03-18 04:56:55.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.844 -07 000000467 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:56:55.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.854 -07 000000581 INF: FPGA: Recv ZSGSRD 35517
17-03-18 04:56:55.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35523
17-03-18 04:56:55.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.874 -07 000000382 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:56:55.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35525
17-03-18 04:56:55.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:56:55.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.904 -07 000000618 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:56:55.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:55.914 -07 000000512 INF: FPGA: Recv ZSGSRD 35527
17-03-18 04:56:55.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:55.924 -07 000000625 INF: FPGA: Recv ZPIEZORD 31228
17-03-18 04:56:55.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:55.934 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.5 V.
17-03-18 04:56:55.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35523 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35517 (-167.6 uncal um), Max = 35529 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:56:55.934 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35523, posNoise = 6, negNoise = 6
17-03-18 04:56:55.934 -07 000000610 INF: Z Motor: After move to -0.168515, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:55.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:56:55.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:55.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:55.934 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:55.934 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:55.934 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:55.934 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:55.934 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:55.934 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:55.934 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:56:55.934 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:55.934 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:56:55.934 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:55.934 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:55.934 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:55.934 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:56:55.934 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:56:55.944 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:56:55.944 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:56:55.944 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:56:55.944 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:56:55.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36988 150\n [Camera]
17-03-18 04:56:56.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:56:56.584 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:56:56.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:56:56.584 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:56.584 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:56.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:56:56.584 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:56:56.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:56:56.584 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:56.584 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:56.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 04:56:56.714 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:56:56.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:56:56.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36988 814
17-03-18 04:56:56.924 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:56:56.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:56:56.964 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:56:56.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:56.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:56:56.964 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:56:56.964 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:56.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:56.974 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:56:56.974 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:56.984 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:56:57.134 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:56:57.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:56:57.134 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:56:57.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:56:57.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:56:57.274 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:56:57.274 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:56:57.274 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 04:56:57.284 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:56:57.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:56:57.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:56:57.324 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:56:57.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36988 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:56:57.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:56:57.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168530639922909. ------
17-03-18 04:56:57.324 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:57.324 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17524 mm
17-03-18 04:56:57.324 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:56:57.334 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:56:57.334 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:56:57.334 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:57.334 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:56:57.334 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38282, sync = True, waitForSettling = False)
17-03-18 04:56:57.334 -07 000000625 INF: Z Motor: Moving to -0.175244 mm, started at -0.168531 mm, distance = -6.71 um
17-03-18 04:56:57.354 -07 000000625 INF: FPGA: Xmit ZDACW 38282\n [Z Motor]
17-03-18 04:56:57.354 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:56:57.364 -07 000000625 INF: FPGA: 'ZDACW 38282' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:56:57.364 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:57.364 -07 000000467 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:56:57.374 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:56:57.374 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 04:56:57.374 -07 000000512 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:57.374 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:56:57.374 -07 000000512 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:56:57.394 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:57.394 -07 000000626 INF: FPGA: Recv ZDACR 38282
17-03-18 04:56:57.404 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:56:57.404 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:56:57.404 -07 000000625 INF: Z Motor: MoveAbsStepped took 68 ms (did NOT wait for settling yet))
17-03-18 04:56:57.574 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:56:57.574 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 192 ms to get response, and 240 ms overall
17-03-18 04:56:57.664 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.02213,
17-03-18 04:56:57.674 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:56:57.674 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:56:57.674 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:57.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:56:57.674 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:56:57.674 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:57.684 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:57.684 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 547 ms.
17-03-18 04:56:57.684 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:56:57.684 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:56:57.774 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:56:57.774 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall
17-03-18 04:56:57.824 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:57.834 -07 000000455 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:56:57.834 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:56:57.834 -07 000000512 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:57.834 -07 000000512 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 04:56:57.834 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.845 mm, average velocity = 2.085 mm/sec
17-03-18 04:56:58.784 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:56:58.784 -07 000000581 INF: FPGA: Recv YRDPOS 137975
17-03-18 04:56:58.794 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.794 -07 000000512 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:56:58.824 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:56:58.824 -07 000000512 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:56:58.824 -07 000000512 INF: Y Motor: Moved to 67.3706 after 1490 ms (table move)
17-03-18 04:56:58.824 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175244 mm (DAC = 38282)
17-03-18 04:56:58.824 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.824 -07 000000606 INF: FPGA: Recv ZSGSRD 36572
17-03-18 04:56:58.834 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:56:58.834 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.834 -07 000000461 INF: FPGA: Recv ZSGSRD 36575
17-03-18 04:56:58.844 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.844 -07 000000474 INF: FPGA: Recv ZSGSRD 36561
17-03-18 04:56:58.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.854 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.854 -07 000000618 INF: FPGA: Recv ZSGSRD 36566
17-03-18 04:56:58.864 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.864 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.864 -07 000000424 INF: FPGA: Recv ZSGSRD 36570
17-03-18 04:56:58.874 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.874 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.874 -07 000000455 INF: FPGA: Recv ZSGSRD 36571
17-03-18 04:56:58.884 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.884 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.884 -07 000000480 INF: FPGA: Recv ZSGSRD 36569
17-03-18 04:56:58.894 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.894 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.894 -07 000000608 INF: FPGA: Recv ZSGSRD 36566
17-03-18 04:56:58.904 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.904 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.904 -07 000000479 INF: FPGA: Recv ZSGSRD 36579
17-03-18 04:56:58.914 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.914 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:58.914 -07 000000424 INF: FPGA: Recv ZSGSRD 36571
17-03-18 04:56:58.924 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.924 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:58.924 -07 000000569 INF: FPGA: Recv ZPIEZORD 32634
17-03-18 04:56:58.934 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:58.934 -07 000000502 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.7 V.
17-03-18 04:56:58.934 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36570 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36570 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36561 (-174.3 uncal um), Max = 36579 (-174.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:56:58.934 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36570, posNoise = 9, negNoise = 9
17-03-18 04:56:58.934 -07 000000502 INF: Z Motor: After move to -0.175244, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:58.934 -07 000000502 INF: Z Motor: Settle wait time = 1493 ms, measure time = 105 ms (allowed 150 ms), total time = 1598 ms
17-03-18 04:56:58.934 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:56:58.984 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1651 ms
17-03-18 04:56:58.984 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:56:58.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:58.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:58.984 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:58.984 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:56:58.984 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:58.984 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:58.984 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:56:58.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:56:58.994 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:58.994 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:56:58.994 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:56:58.994 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:56:59.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:56:59.044 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 04:56:59.344 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 04:56:59.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 04:56:59.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:56:59.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-18 04:56:59.384 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:56:59.384 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:56:59.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:56:59.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:56:59.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:56:59.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:56:59.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:56:59.484 -07 000000480 INF: Autofocus start
17-03-18 04:56:59.484 -07 000000480 INF: MeasureProfile start
17-03-18 04:56:59.484 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:56:59.484 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:56:59.494 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:56:59.494 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:56:59.494 -07 000000480 INF: MeasureProfile done
17-03-18 04:56:59.494 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:56:59.494 -07 000000480 INF: Autofocus finished
17-03-18 04:56:59.694 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:56:59.694 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:56:59.694 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175256790035333. ----------
17-03-18 04:56:59.694 -07 000000610 INF: Cycle	131	Tile	10	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:56:59.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36815, sync = True, waitForSettling = True)
17-03-18 04:56:59.704 -07 000000610 INF: Z Motor: Moving to -0.168528 mm, started at -0.175257 mm, distance = 6.73 um
17-03-18 04:56:59.704 -07 000000610 INF: FPGA: Xmit ZDACW 36815\n [Z Motor]
17-03-18 04:56:59.704 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:56:59.714 -07 000000610 INF: FPGA: 'ZDACW 36815' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:56:59.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:56:59.714 -07 000000512 INF: FPGA: Recv ZDACR 36815
17-03-18 04:56:59.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:56:59.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.874 -07 000000479 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:56:59.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:56:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.884 -07 000000579 INF: FPGA: Recv ZSGSRD 35526
17-03-18 04:56:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:56:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35522
17-03-18 04:56:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.914 -07 000000569 INF: FPGA: Recv ZSGSRD 35521
17-03-18 04:56:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.924 -07 000000502 INF: FPGA: Recv ZSGSRD 35524
17-03-18 04:56:59.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.934 -07 000000618 INF: FPGA: Recv ZSGSRD 35527
17-03-18 04:56:59.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:56:59.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.944 -07 000000479 INF: FPGA: Recv ZSGSRD 35520
17-03-18 04:56:59.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.954 -07 000000512 INF: FPGA: Recv ZSGSRD 35525
17-03-18 04:56:59.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:56:59.964 -07 000000479 INF: FPGA: Recv ZSGSRD 35528
17-03-18 04:56:59.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:56:59.974 -07 000000461 INF: FPGA: Recv ZPIEZORD 31250
17-03-18 04:56:59.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:56:59.984 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-18 04:56:59.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35524 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35524 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35520 (-167.6 uncal um), Max = 35528 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:56:59.984 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35524, posNoise = 4, negNoise = 4
17-03-18 04:56:59.984 -07 000000610 INF: Z Motor: After move to -0.168528, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:56:59.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:56:59.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:56:59.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:56:59.984 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:56:59.984 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:56:59.984 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:56:59.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:56:59.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:56:59.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:56:59.984 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:56:59.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:56:59.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:56:59.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:56:59.994 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:56:59.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:56:59.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:56:59.994 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:00.004 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:57:00.004 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:57:00.004 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:57:00.004 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:00.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36992 150\n [Camera]
17-03-18 04:57:00.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:00.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:00.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:00.634 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:00.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:00.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:00.644 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:00.644 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:00.644 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:57:00.644 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:00.644 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) start.
17-03-18 04:57:00.824 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36992 814
17-03-18 04:57:00.974 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:01.044 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:57:01.044 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:57:01.044 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:01.044 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:57:01.044 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:57:01.044 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:01.044 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:01.044 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:01.044 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:57:01.054 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:57:01.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:01.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:01.184 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:01.304 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:01.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:01.304 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:01.304 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2618518512, 0x0, 391868352) start.
17-03-18 04:57:01.304 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:01.304 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:01.304 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:57:01.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:57:01.374 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:01.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36992 150' command took 2 ms to send, 1366 ms to get response, and 1369 ms overall
17-03-18 04:57:01.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:01.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168537064135051. ------
17-03-18 04:57:01.384 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:01.384 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17480 mm
17-03-18 04:57:01.384 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:01.384 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:57:01.384 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 04:57:01.384 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:01.384 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38186, sync = True, waitForSettling = False)
17-03-18 04:57:01.384 -07 000000501 INF: Z Motor: Moving to -0.174804 mm, started at -0.168537 mm, distance = -6.27 um
17-03-18 04:57:01.394 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:01.394 -07 000000501 INF: FPGA: Xmit ZDACW 38186\n [Z Motor]
17-03-18 04:57:01.394 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:57:01.404 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:01.404 -07 000000501 INF: FPGA: 'ZDACW 38186' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:57:01.404 -07 000000447 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:57:01.414 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:57:01.414 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:01.414 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:01.414 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:01.414 -07 000000569 INF: Y Motor: Moving 1346 steps-25
17-03-18 04:57:01.424 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:01.424 -07 000000480 INF: FPGA: Recv ZDACR 38186
17-03-18 04:57:01.434 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:01.434 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:01.434 -07 000000501 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:57:01.614 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:01.614 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 04:57:01.704 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:57:01.704 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:57:01.704 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:01.704 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2618518512, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:57:01.704 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:57:01.704 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:01.704 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:01.714 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:01.714 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 04:57:01.714 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:57:01.714 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:01.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:01.804 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:57:01.804 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 04:57:01.854 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:01.864 -07 000000479 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:57:01.864 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:01.864 -07 000000569 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:01.864 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:57:01.864 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.842 mm, average velocity = 2.159 mm/sec
17-03-18 04:57:02.814 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:02.814 -07 000000461 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:57:02.824 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:02.824 -07 000000569 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:02.854 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:02.854 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:02.854 -07 000000569 INF: Y Motor: Moved to 68.2036 after 1467 ms (table move)
17-03-18 04:57:02.854 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174804 mm (DAC = 38186)
17-03-18 04:57:02.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.854 -07 000000447 INF: FPGA: Recv ZSGSRD 36510
17-03-18 04:57:02.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:02.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.864 -07 000000626 INF: FPGA: Recv ZSGSRD 36505
17-03-18 04:57:02.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.874 -07 000000501 INF: FPGA: Recv ZSGSRD 36499
17-03-18 04:57:02.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.884 -07 000000608 INF: FPGA: Recv ZSGSRD 36493
17-03-18 04:57:02.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.894 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.894 -07 000000479 INF: FPGA: Recv ZSGSRD 36495
17-03-18 04:57:02.904 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.904 -07 000000455 INF: FPGA: Recv ZSGSRD 36504
17-03-18 04:57:02.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.914 -07 000000579 INF: FPGA: Recv ZSGSRD 36500
17-03-18 04:57:02.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.924 -07 000000461 INF: FPGA: Recv ZSGSRD 36504
17-03-18 04:57:02.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.934 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.934 -07 000000382 INF: FPGA: Recv ZSGSRD 36507
17-03-18 04:57:02.944 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:02.944 -07 000000625 INF: FPGA: Recv ZSGSRD 36497
17-03-18 04:57:02.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.954 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:02.954 -07 000000447 INF: FPGA: Recv ZPIEZORD 32534
17-03-18 04:57:02.964 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:02.964 -07 000000424 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.8 V.
17-03-18 04:57:02.964 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36501 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36502 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36493 (-173.9 uncal um), Max = 36510 (-174.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:57:02.964 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36501, posNoise = 9, negNoise = 8
17-03-18 04:57:02.964 -07 000000424 INF: Z Motor: After move to -0.174804, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:02.964 -07 000000424 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms
17-03-18 04:57:02.964 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:03.014 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:57:03.014 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:03.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:03.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:03.014 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:03.014 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:03.014 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:03.014 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:03.014 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:03.014 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:03.024 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:03.024 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:03.034 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:57:03.034 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:57:03.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:03.074 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.996267,
17-03-18 04:57:03.084 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:03.384 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:03.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:03.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:03.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-18 04:57:03.424 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:03.424 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:03.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 388 ms overall
17-03-18 04:57:03.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:57:03.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:03.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:03.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:57:03.524 -07 000000424 INF: Autofocus start
17-03-18 04:57:03.524 -07 000000424 INF: MeasureProfile start
17-03-18 04:57:03.524 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:03.524 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:03.534 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:03.534 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:03.534 -07 000000424 INF: MeasureProfile done
17-03-18 04:57:03.534 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:57:03.534 -07 000000424 INF: Autofocus finished
17-03-18 04:57:03.734 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:03.734 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:03.734 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.174813519397552. ----------
17-03-18 04:57:03.734 -07 000000610 INF: Cycle	131	Tile	11	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:03.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36718, sync = True, waitForSettling = True)
17-03-18 04:57:03.744 -07 000000610 INF: Z Motor: Moving to -0.168084 mm, started at -0.174814 mm, distance = 6.73 um
17-03-18 04:57:03.744 -07 000000610 INF: FPGA: Xmit ZDACW 36718\n [Z Motor]
17-03-18 04:57:03.744 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:57:03.754 -07 000000610 INF: FPGA: 'ZDACW 36718' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:03.754 -07 000000626 INF: FPGA: Recv ZDACR 36718
17-03-18 04:57:03.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.914 -07 000000461 INF: FPGA: Recv ZSGSRD 35452
17-03-18 04:57:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.924 -07 000000581 INF: FPGA: Recv ZSGSRD 35455
17-03-18 04:57:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.934 -07 000000382 INF: FPGA: Recv ZSGSRD 35452
17-03-18 04:57:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.944 -07 000000618 INF: FPGA: Recv ZSGSRD 35453
17-03-18 04:57:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.954 -07 000000512 INF: FPGA: Recv ZSGSRD 35457
17-03-18 04:57:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.964 -07 000000480 INF: FPGA: Recv ZSGSRD 35459
17-03-18 04:57:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.974 -07 000000579 INF: FPGA: Recv ZSGSRD 35451
17-03-18 04:57:03.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.984 -07 000000608 INF: FPGA: Recv ZSGSRD 35451
17-03-18 04:57:03.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:03.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:03.994 -07 000000618 INF: FPGA: Recv ZSGSRD 35452
17-03-18 04:57:04.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:04.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:04.004 -07 000000455 INF: FPGA: Recv ZSGSRD 35458
17-03-18 04:57:04.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:04.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:04.014 -07 000000461 INF: FPGA: Recv ZPIEZORD 31181
17-03-18 04:57:04.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:04.024 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 04:57:04.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35454 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35452 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35451 (-167.2 uncal um), Max = 35459 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:57:04.024 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35454, posNoise = 5, negNoise = 3
17-03-18 04:57:04.024 -07 000000610 INF: Z Motor: After move to -0.168084, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:04.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:57:04.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:04.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:04.024 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:04.024 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:04.024 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:04.024 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:04.024 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:04.024 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:04.024 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:57:04.024 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:04.024 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:04.024 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:04.034 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:04.034 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:04.034 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:04.034 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:04.034 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:57:04.034 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:57:04.044 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:57:04.044 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:57:04.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36895 150\n [Camera]
17-03-18 04:57:04.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:04.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:04.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:04.674 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:04.674 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:04.674 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:57:04.674 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:04.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:04.674 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:04.674 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:04.674 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2197586136, 0x0, 418435064) start.
17-03-18 04:57:04.864 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36895 814
17-03-18 04:57:05.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:05.054 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:57:05.054 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:57:05.054 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:05.054 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2197586136, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:57:05.054 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:57:05.054 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:05.054 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:05.054 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:57:05.054 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:05.064 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:57:05.224 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:05.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:05.224 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:05.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:05.224 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:05.224 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start.
17-03-18 04:57:05.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:05.224 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:05.224 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:05.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:57:05.414 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:05.414 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:05.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36895 150' command took 4 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-18 04:57:05.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:05.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168087369285128. ------
17-03-18 04:57:05.534 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:05.534 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17463 mm
17-03-18 04:57:05.534 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:05.534 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:57:05.534 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 04:57:05.534 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38148, sync = True, waitForSettling = False)
17-03-18 04:57:05.534 -07 000000474 INF: Z Motor: Moving to -0.174630 mm, started at -0.168087 mm, distance = -6.54 um
17-03-18 04:57:05.534 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:05.544 -07 000000474 INF: FPGA: Xmit ZDACW 38148\n [Z Motor]
17-03-18 04:57:05.544 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:05.544 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:57:05.554 -07 000000474 INF: FPGA: 'ZDACW 38148' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:57:05.554 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:05.554 -07 000000502 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:57:05.564 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:57:05.564 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:05.564 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:05.564 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:05.564 -07 000000626 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:57:05.574 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:05.574 -07 000000502 INF: FPGA: Recv ZDACR 38148
17-03-18 04:57:05.584 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:05.584 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:05.584 -07 000000474 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:57:05.624 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:57:05.624 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:57:05.624 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:05.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:57:05.624 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:57:05.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:05.624 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:05.624 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:57:05.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:57:05.634 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:57:05.764 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:05.764 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:57:05.954 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:57:05.954 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:57:06.004 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:06.014 -07 000000447 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:57:06.014 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:06.014 -07 000000626 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:06.014 -07 000000626 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:57:06.014 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-18 04:57:06.714 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:06.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:06.964 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:06.964 -07 000000618 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:57:06.974 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:06.974 -07 000000626 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:07.004 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:07.004 -07 000000626 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:07.004 -07 000000626 INF: Y Motor: Moved to 69.0259 after 1462 ms (table move)
17-03-18 04:57:07.004 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174630 mm (DAC = 38148)
17-03-18 04:57:07.004 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.004 -07 000000608 INF: FPGA: Recv ZSGSRD 36471
17-03-18 04:57:07.014 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:07.014 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.014 -07 000000502 INF: FPGA: Recv ZSGSRD 36471
17-03-18 04:57:07.024 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.024 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.024 -07 000000579 INF: FPGA: Recv ZSGSRD 36469
17-03-18 04:57:07.034 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.034 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.034 -07 000000479 INF: FPGA: Recv ZSGSRD 36469
17-03-18 04:57:07.044 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.044 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.044 -07 000000474 INF: FPGA: Recv ZSGSRD 36473
17-03-18 04:57:07.054 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.054 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.054 -07 000000608 INF: FPGA: Recv ZSGSRD 36477
17-03-18 04:57:07.064 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.064 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.064 -07 000000502 INF: FPGA: Recv ZSGSRD 36473
17-03-18 04:57:07.074 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.074 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.074 -07 000000382 INF: FPGA: Recv ZSGSRD 36480
17-03-18 04:57:07.084 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.084 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.084 -07 000000569 INF: FPGA: Recv ZSGSRD 36476
17-03-18 04:57:07.094 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.094 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:07.094 -07 000000512 INF: FPGA: Recv ZSGSRD 36474
17-03-18 04:57:07.104 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.104 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:07.104 -07 000000626 INF: FPGA: Recv ZPIEZORD 32539
17-03-18 04:57:07.114 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:57:07.114 -07 000000461 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.7 V.
17-03-18 04:57:07.114 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36473 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36473 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36469 (-173.7 uncal um), Max = 36480 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:57:07.114 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36473, posNoise = 7, negNoise = 4
17-03-18 04:57:07.114 -07 000000461 INF: Z Motor: After move to -0.174630, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:07.114 -07 000000461 INF: Z Motor: Settle wait time = 1465 ms, measure time = 106 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:57:07.114 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:07.164 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:57:07.164 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:07.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:07.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:07.164 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:07.164 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:07.164 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:07.164 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:07.164 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:07.164 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:07.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:07.174 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:07.184 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:57:07.184 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:57:07.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:07.234 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:07.534 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:07.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:07.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:07.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:07.574 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:07.574 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:07.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:57:07.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 04:57:07.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:07.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:07.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 04:57:07.674 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:07.674 -07 000000474 INF: Autofocus start
17-03-18 04:57:07.674 -07 000000474 INF: MeasureProfile start
17-03-18 04:57:07.674 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:07.684 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:07.684 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:07.684 -07 000000474 INF: MeasureProfile done
17-03-18 04:57:07.684 -07 000000474 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:57:07.684 -07 000000474 INF: Autofocus finished
17-03-18 04:57:07.884 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:07.884 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:57:07.894 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174633641457582. ----------
17-03-18 04:57:07.894 -07 000000610 INF: Cycle	131	Tile	12	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:07.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36681, sync = True, waitForSettling = True)
17-03-18 04:57:07.894 -07 000000610 INF: Z Motor: Moving to -0.167915 mm, started at -0.174634 mm, distance = 6.72 um
17-03-18 04:57:07.894 -07 000000610 INF: FPGA: Xmit ZDACW 36681\n [Z Motor]
17-03-18 04:57:07.894 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:57:07.904 -07 000000610 INF: FPGA: 'ZDACW 36681' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:07.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:07.904 -07 000000479 INF: FPGA: Recv ZDACR 36681
17-03-18 04:57:07.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:07.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:08.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.064 -07 000000461 INF: FPGA: Recv ZSGSRD 35429
17-03-18 04:57:08.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:08.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.074 -07 000000447 INF: FPGA: Recv ZSGSRD 35433
17-03-18 04:57:08.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:08.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.084 -07 000000625 INF: FPGA: Recv ZSGSRD 35426
17-03-18 04:57:08.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:08.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.094 -07 000000382 INF: FPGA: Recv ZSGSRD 35426
17-03-18 04:57:08.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:08.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.104 -07 000000606 INF: FPGA: Recv ZSGSRD 35429
17-03-18 04:57:08.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:08.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.124 -07 000000382 INF: FPGA: Recv ZSGSRD 35434
17-03-18 04:57:08.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:08.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35430
17-03-18 04:57:08.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:08.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.164 -07 000000569 INF: FPGA: Recv ZSGSRD 35428
17-03-18 04:57:08.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:08.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.194 -07 000000424 INF: FPGA: Recv ZSGSRD 35431
17-03-18 04:57:08.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:08.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:08.214 -07 000000447 INF: FPGA: Recv ZSGSRD 35434
17-03-18 04:57:08.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:08.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:08.224 -07 000000455 INF: FPGA: Recv ZPIEZORD 31161
17-03-18 04:57:08.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:08.234 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.4 V.
17-03-18 04:57:08.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35430 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35430 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35426 (-167.0 uncal um), Max = 35434 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:57:08.234 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35430, posNoise = 4, negNoise = 4
17-03-18 04:57:08.234 -07 000000610 INF: Z Motor: After move to -0.167915, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:08.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 337 ms)
17-03-18 04:57:08.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:08.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:08.234 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:08.234 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:08.234 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:08.234 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:08.234 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:08.234 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:08.234 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:57:08.234 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:08.234 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:08.234 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:08.244 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:57:08.244 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:08.244 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:08.244 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:08.254 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:57:08.254 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:08.254 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:57:08.254 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:57:08.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36858 150\n [Camera]
17-03-18 04:57:08.454 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.966297,
17-03-18 04:57:08.454 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:08.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:08.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:08.884 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:08.884 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:08.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:08.884 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:08.884 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:08.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:57:08.894 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:08.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:57:09.074 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36858 814
17-03-18 04:57:09.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:09.264 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:57:09.264 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:57:09.264 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:09.264 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:57:09.264 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:57:09.264 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:09.264 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:57:09.264 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:57:09.274 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:09.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:57:09.434 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:09.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:09.434 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:09.434 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:09.434 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:57:09.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:09.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:09.434 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:09.434 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:09.434 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2600766168, 0x0, 418435064) start.
17-03-18 04:57:09.624 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:09.624 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:09.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36858 150' command took 2 ms to send, 1365 ms to get response, and 1370 ms overall
17-03-18 04:57:09.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:09.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167933188193726. ------
17-03-18 04:57:09.634 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:09.634 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17429 mm
17-03-18 04:57:09.634 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:09.634 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:09.634 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:57:09.634 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38075, sync = True, waitForSettling = False)
17-03-18 04:57:09.634 -07 000000474 INF: Z Motor: Moving to -0.174296 mm, started at -0.167933 mm, distance = -6.36 um
17-03-18 04:57:09.634 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:57:09.644 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:57:09.644 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:09.654 -07 000000474 INF: FPGA: Xmit ZDACW 38075\n [Z Motor]
17-03-18 04:57:09.654 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:57:09.664 -07 000000474 INF: FPGA: 'ZDACW 38075' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:57:09.664 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:09.664 -07 000000479 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:57:09.674 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:57:09.674 -07 000000569 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:09.674 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:09.674 -07 000000569 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:57:09.674 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:09.674 -07 000000447 INF: FPGA: Recv ZDACR 38075
17-03-18 04:57:09.684 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:09.684 -07 000000474 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:57:09.684 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:09.834 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:57:09.834 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:57:09.834 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:09.834 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2600766168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:57:09.834 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:57:09.834 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:09.834 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:09.834 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:09.834 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:57:09.844 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:09.844 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:09.844 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:57:10.054 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:57:10.054 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 04:57:10.104 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:10.114 -07 000000424 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:57:10.114 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:57:10.114 -07 000000569 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:10.114 -07 000000569 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 04:57:10.114 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.847 mm, average velocity = 2.182 mm/sec
17-03-18 04:57:11.064 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:11.064 -07 000000606 INF: FPGA: Recv YRDPOS 143077
17-03-18 04:57:11.074 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.074 -07 000000569 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:11.104 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:11.104 -07 000000569 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:11.104 -07 000000569 INF: Y Motor: Moved to 69.8618 after 1464 ms (table move)
17-03-18 04:57:11.104 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174296 mm (DAC = 38075)
17-03-18 04:57:11.104 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.104 -07 000000447 INF: FPGA: Recv ZSGSRD 36423
17-03-18 04:57:11.114 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:11.114 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.114 -07 000000474 INF: FPGA: Recv ZSGSRD 36429
17-03-18 04:57:11.124 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.124 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.124 -07 000000382 INF: FPGA: Recv ZSGSRD 36420
17-03-18 04:57:11.134 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.134 -07 000000479 INF: FPGA: Recv ZSGSRD 36417
17-03-18 04:57:11.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.144 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.144 -07 000000569 INF: FPGA: Recv ZSGSRD 36421
17-03-18 04:57:11.154 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.154 -07 000000626 INF: FPGA: Recv ZSGSRD 36415
17-03-18 04:57:11.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.164 -07 000000474 INF: FPGA: Recv ZSGSRD 36425
17-03-18 04:57:11.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.174 -07 000000424 INF: FPGA: Recv ZSGSRD 36420
17-03-18 04:57:11.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.184 -07 000000502 INF: FPGA: Recv ZSGSRD 36426
17-03-18 04:57:11.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:11.194 -07 000000512 INF: FPGA: Recv ZSGSRD 36430
17-03-18 04:57:11.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.204 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:11.204 -07 000000626 INF: FPGA: Recv ZPIEZORD 32523
17-03-18 04:57:11.214 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:11.214 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.810 V. Piezo Error = -8.6 V.
17-03-18 04:57:11.214 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36423 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36422 (-173.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36415 (-173.4 uncal um), Max = 36430 (-173.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:57:11.214 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36423, posNoise = 7, negNoise = 8
17-03-18 04:57:11.214 -07 000000608 INF: Z Motor: After move to -0.174296, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:11.214 -07 000000608 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:57:11.214 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:11.264 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:57:11.264 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:11.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:11.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:11.264 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:11.264 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:11.264 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:11.264 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:11.264 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:11.264 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:11.274 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:11.274 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:11.274 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:57:11.274 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:57:11.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:11.324 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:11.624 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:11.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:11.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:11.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-18 04:57:11.664 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:11.664 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:11.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:57:11.714 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:11.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:57:11.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:11.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:11.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:57:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:11.764 -07 000000579 INF: Autofocus start
17-03-18 04:57:11.764 -07 000000579 INF: MeasureProfile start
17-03-18 04:57:11.764 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:11.764 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:11.774 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:11.774 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:11.774 -07 000000579 INF: MeasureProfile done
17-03-18 04:57:11.774 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:57:11.774 -07 000000579 INF: Autofocus finished
17-03-18 04:57:11.974 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:11.974 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:11.984 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174312430850494. ----------
17-03-18 04:57:11.984 -07 000000610 INF: Cycle	131	Tile	13	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:11.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36589, sync = True, waitForSettling = True)
17-03-18 04:57:11.984 -07 000000610 INF: Z Motor: Moving to -0.167494 mm, started at -0.174312 mm, distance = 6.82 um
17-03-18 04:57:11.984 -07 000000610 INF: FPGA: Xmit ZDACW 36589\n [Z Motor]
17-03-18 04:57:11.984 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:57:11.994 -07 000000610 INF: FPGA: 'ZDACW 36589' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:11.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:11.994 -07 000000606 INF: FPGA: Recv ZDACR 36589
17-03-18 04:57:12.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:12.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.154 -07 000000479 INF: FPGA: Recv ZSGSRD 35362
17-03-18 04:57:12.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:12.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.164 -07 000000579 INF: FPGA: Recv ZSGSRD 35368
17-03-18 04:57:12.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.174 -07 000000455 INF: FPGA: Recv ZSGSRD 35354
17-03-18 04:57:12.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.184 -07 000000579 INF: FPGA: Recv ZSGSRD 35362
17-03-18 04:57:12.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.194 -07 000000455 INF: FPGA: Recv ZSGSRD 35363
17-03-18 04:57:12.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.204 -07 000000579 INF: FPGA: Recv ZSGSRD 35363
17-03-18 04:57:12.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.214 -07 000000480 INF: FPGA: Recv ZSGSRD 35364
17-03-18 04:57:12.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.224 -07 000000461 INF: FPGA: Recv ZSGSRD 35359
17-03-18 04:57:12.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35367
17-03-18 04:57:12.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:12.244 -07 000000512 INF: FPGA: Recv ZSGSRD 35364
17-03-18 04:57:12.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:12.254 -07 000000424 INF: FPGA: Recv ZPIEZORD 31104
17-03-18 04:57:12.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:12.264 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.4 V.
17-03-18 04:57:12.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35363 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35363 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35354 (-166.6 uncal um), Max = 35368 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:57:12.264 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35363, posNoise = 5, negNoise = 9
17-03-18 04:57:12.264 -07 000000610 INF: Z Motor: After move to -0.167494, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:12.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:57:12.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:12.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:12.264 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:12.264 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:12.264 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:12.264 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:12.264 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:12.264 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:12.264 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:12.264 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:12.264 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:12.264 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:12.274 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:12.274 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:12.274 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:12.274 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:12.284 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:57:12.284 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:57:12.284 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:57:12.284 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:57:12.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36766 150\n [Camera]
17-03-18 04:57:12.484 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:12.914 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:12.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:12.914 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:12.914 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:12.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2636188432, 0x0, 391868352) start.
17-03-18 04:57:12.924 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:12.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:12.924 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:12.924 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:12.924 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:57:13.104 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36766 814
17-03-18 04:57:13.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:13.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:57:13.294 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:57:13.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:13.294 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:13.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2636188432, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:57:13.304 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:57:13.304 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:13.304 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:57:13.304 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:13.304 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:57:13.464 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:13.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:13.464 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:13.464 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:13.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:57:13.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:13.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:13.464 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:13.464 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:13.464 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:57:13.654 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:13.654 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:13.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36766 150' command took 2 ms to send, 1358 ms to get response, and 1370 ms overall
17-03-18 04:57:13.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:13.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167502765980228. ------
17-03-18 04:57:13.794 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17384 mm
17-03-18 04:57:13.794 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:13.794 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:13.794 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37974, sync = True, waitForSettling = False)
17-03-18 04:57:13.794 -07 000000569 INF: Z Motor: Moving to -0.173834 mm, started at -0.167503 mm, distance = -6.33 um
17-03-18 04:57:13.794 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:57:13.794 -07 000000461 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 04:57:13.794 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:13.804 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:13.804 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:13.804 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:57:13.814 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:57:13.814 -07 000000461 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:13.814 -07 000000569 INF: FPGA: Xmit ZDACW 37974\n [Z Motor]
17-03-18 04:57:13.814 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:57:13.814 -07 000000461 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:13.814 -07 000000461 INF: Y Motor: Moving 1344 steps-22
17-03-18 04:57:13.824 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:13.824 -07 000000569 INF: FPGA: 'ZDACW 37974' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:57:13.834 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:13.844 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:13.844 -07 000000501 INF: FPGA: Recv ZDACR 37974
17-03-18 04:57:13.854 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:13.854 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:57:13.864 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.983999,
17-03-18 04:57:13.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:57:13.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:57:13.874 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:13.874 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:57:13.874 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:57:13.874 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:13.874 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:13.884 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:13.884 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:57:13.884 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:57:14.024 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:14.024 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:57:14.204 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:57:14.204 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:57:14.254 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:14.264 -07 000000480 INF: FPGA: Recv YRDPOS 144767
17-03-18 04:57:14.264 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:14.264 -07 000000461 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:14.264 -07 000000461 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:57:14.264 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec
17-03-18 04:57:15.214 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:15.214 -07 000000618 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:57:15.224 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:15.224 -07 000000461 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:15.254 -07 000000461 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:15.254 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:57:15.254 -07 000000461 INF: Y Motor: Moved to 70.6875 after 1452 ms (table move)
17-03-18 04:57:15.254 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173834 mm (DAC = 37974)
17-03-18 04:57:15.254 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.254 -07 000000455 INF: FPGA: Recv ZSGSRD 36353
17-03-18 04:57:15.264 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:15.264 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.264 -07 000000424 INF: FPGA: Recv ZSGSRD 36354
17-03-18 04:57:15.274 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.274 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.274 -07 000000608 INF: FPGA: Recv ZSGSRD 36349
17-03-18 04:57:15.284 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.284 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.284 -07 000000424 INF: FPGA: Recv ZSGSRD 36349
17-03-18 04:57:15.294 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.294 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.294 -07 000000579 INF: FPGA: Recv ZSGSRD 36346
17-03-18 04:57:15.304 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.304 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.304 -07 000000512 INF: FPGA: Recv ZSGSRD 36348
17-03-18 04:57:15.314 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.314 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.314 -07 000000382 INF: FPGA: Recv ZSGSRD 36351
17-03-18 04:57:15.324 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.324 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.324 -07 000000581 INF: FPGA: Recv ZSGSRD 36349
17-03-18 04:57:15.334 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.334 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.334 -07 000000625 INF: FPGA: Recv ZSGSRD 36354
17-03-18 04:57:15.344 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.344 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:15.344 -07 000000447 INF: FPGA: Recv ZSGSRD 36353
17-03-18 04:57:15.354 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.354 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:15.354 -07 000000608 INF: FPGA: Recv ZPIEZORD 32381
17-03-18 04:57:15.364 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:15.364 -07 000000479 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.8 V.
17-03-18 04:57:15.364 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36351 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36350 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36346 (-172.9 uncal um), Max = 36354 (-173.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:57:15.364 -07 000000479 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36351, posNoise = 3, negNoise = 5
17-03-18 04:57:15.364 -07 000000479 INF: Z Motor: After move to -0.173834, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:15.364 -07 000000479 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:57:15.364 -07 000000479 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:15.414 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:57:15.414 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:15.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:15.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:15.414 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:15.414 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:15.414 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:15.414 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:15.414 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:57:15.414 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:15.424 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:15.424 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:15.434 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:57:15.434 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:57:15.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:15.484 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:15.784 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:15.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:15.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:15.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:15.824 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:15.824 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:15.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 388 ms overall
17-03-18 04:57:15.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:57:15.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:15.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:15.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:57:15.924 -07 000000579 INF: Autofocus start
17-03-18 04:57:15.924 -07 000000579 INF: MeasureProfile start
17-03-18 04:57:15.924 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:15.924 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:15.934 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:15.934 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:15.934 -07 000000579 INF: MeasureProfile done
17-03-18 04:57:15.934 -07 000000579 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:57:15.934 -07 000000579 INF: Autofocus finished
17-03-18 04:57:16.134 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:16.134 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:16.134 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173849887576288. ----------
17-03-18 04:57:16.134 -07 000000610 INF: Cycle	131	Tile	14	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:16.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36507, sync = True, waitForSettling = True)
17-03-18 04:57:16.144 -07 000000610 INF: Z Motor: Moving to -0.167118 mm, started at -0.173850 mm, distance = 6.73 um
17-03-18 04:57:16.144 -07 000000610 INF: FPGA: Xmit ZDACW 36507\n [Z Motor]
17-03-18 04:57:16.144 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:57:16.154 -07 000000610 INF: FPGA: 'ZDACW 36507' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:57:16.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:16.154 -07 000000455 INF: FPGA: Recv ZDACR 36507
17-03-18 04:57:16.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:16.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.314 -07 000000569 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:57:16.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:16.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.324 -07 000000625 INF: FPGA: Recv ZSGSRD 35307
17-03-18 04:57:16.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.334 -07 000000512 INF: FPGA: Recv ZSGSRD 35303
17-03-18 04:57:16.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.344 -07 000000479 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:57:16.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.354 -07 000000461 INF: FPGA: Recv ZSGSRD 35312
17-03-18 04:57:16.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35308
17-03-18 04:57:16.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:57:16.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:57:16.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.394 -07 000000501 INF: FPGA: Recv ZSGSRD 35307
17-03-18 04:57:16.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:16.404 -07 000000606 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:57:16.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:16.414 -07 000000569 INF: FPGA: Recv ZPIEZORD 30986
17-03-18 04:57:16.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:16.424 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.5 V.
17-03-18 04:57:16.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35305 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35304 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35302 (-166.2 uncal um), Max = 35312 (-166.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:57:16.424 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35305, posNoise = 7, negNoise = 3
17-03-18 04:57:16.424 -07 000000610 INF: Z Motor: After move to -0.167118, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:16.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:57:16.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:16.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:16.424 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:16.424 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:16.424 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:16.424 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:16.424 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:16.424 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:16.424 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:16.424 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:16.424 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:16.424 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:16.434 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:16.434 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:16.434 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:16.434 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:16.444 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:57:16.444 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:57:16.444 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:57:16.444 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:16.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36684 150\n [Camera]
17-03-18 04:57:16.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:16.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:16.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:17.074 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:17.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:17.074 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:17.074 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:17.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:17.074 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:17.084 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:17.084 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:57:17.084 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:17.084 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:57:17.264 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36684 814
17-03-18 04:57:17.414 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:17.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 04:57:17.454 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:57:17.454 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:17.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:57:17.454 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:57:17.454 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:17.464 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:57:17.464 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:57:17.464 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:57:17.474 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:57:17.624 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:17.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:17.624 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:17.624 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:17.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:57:17.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:17.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:17.624 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:17.624 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:17.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:57:17.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:57:17.814 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:17.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36684 150' command took 2 ms to send, 1364 ms to get response, and 1369 ms overall
17-03-18 04:57:17.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:17.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167130161676006. ------
17-03-18 04:57:17.814 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:17.814 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17398 mm
17-03-18 04:57:17.824 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:17.824 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:17.824 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:57:17.824 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38006, sync = True, waitForSettling = False)
17-03-18 04:57:17.954 -07 000000608 INF: Z Motor: Moving to -0.173980 mm, started at -0.167130 mm, distance = -6.85 um
17-03-18 04:57:17.954 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:17.954 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:57:17.954 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 04:57:17.964 -07 000000608 INF: FPGA: Xmit ZDACW 38006\n [Z Motor]
17-03-18 04:57:17.964 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:57:17.974 -07 000000608 INF: FPGA: 'ZDACW 38006' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:57:17.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:17.974 -07 000000502 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:57:17.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:57:17.984 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:17.984 -07 000000626 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:17.984 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:17.984 -07 000000626 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:57:17.984 -07 000000382 INF: FPGA: Recv ZDACR 38006
17-03-18 04:57:17.994 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:17.994 -07 000000608 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 04:57:17.994 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:18.014 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:57:18.014 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:57:18.014 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:18.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:57:18.024 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:57:18.024 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:18.024 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:18.024 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:18.024 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:57:18.034 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:57:18.164 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:18.164 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 135 ms to send, 201 ms to get response, and 338 ms overall
17-03-18 04:57:18.364 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:57:18.364 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:57:18.414 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:18.424 -07 000000455 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:57:18.424 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:18.424 -07 000000626 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:18.424 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:57:18.424 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 04:57:19.224 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.997626,
17-03-18 04:57:19.374 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:19.374 -07 000000625 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:57:19.384 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:19.384 -07 000000626 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:19.414 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:19.414 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:19.414 -07 000000626 INF: Y Motor: Moved to 71.5176 after 1453 ms (table move)
17-03-18 04:57:19.414 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173980 mm (DAC = 38006)
17-03-18 04:57:19.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.414 -07 000000480 INF: FPGA: Recv ZSGSRD 36375
17-03-18 04:57:19.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:19.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.424 -07 000000455 INF: FPGA: Recv ZSGSRD 36372
17-03-18 04:57:19.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.434 -07 000000569 INF: FPGA: Recv ZSGSRD 36375
17-03-18 04:57:19.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.444 -07 000000424 INF: FPGA: Recv ZSGSRD 36372
17-03-18 04:57:19.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.454 -07 000000461 INF: FPGA: Recv ZSGSRD 36368
17-03-18 04:57:19.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.464 -07 000000447 INF: FPGA: Recv ZSGSRD 36371
17-03-18 04:57:19.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.474 -07 000000382 INF: FPGA: Recv ZSGSRD 36370
17-03-18 04:57:19.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.484 -07 000000579 INF: FPGA: Recv ZSGSRD 36368
17-03-18 04:57:19.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.494 -07 000000618 INF: FPGA: Recv ZSGSRD 36370
17-03-18 04:57:19.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:19.504 -07 000000606 INF: FPGA: Recv ZSGSRD 36371
17-03-18 04:57:19.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.514 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:19.514 -07 000000474 INF: FPGA: Recv ZPIEZORD 32418
17-03-18 04:57:19.524 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:19.524 -07 000000467 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.7 V.
17-03-18 04:57:19.524 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36371 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36371 (-173.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36368 (-173.1 uncal um), Max = 36375 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:57:19.524 -07 000000467 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36371, posNoise = 4, negNoise = 3
17-03-18 04:57:19.524 -07 000000467 INF: Z Motor: After move to -0.173980, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:19.524 -07 000000467 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:57:19.524 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:19.574 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1750 ms
17-03-18 04:57:19.574 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:19.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:19.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:19.574 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:19.574 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:19.574 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:19.574 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:19.584 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:19.584 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:19.584 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:19.584 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:19.594 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:57:19.594 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:57:19.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:19.634 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:19.934 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:19.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:19.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:19.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:19.974 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:19.974 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:19.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:57:20.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:57:20.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:20.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:57:20.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:57:20.074 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:20.074 -07 000000512 INF: Autofocus start
17-03-18 04:57:20.074 -07 000000512 INF: MeasureProfile start
17-03-18 04:57:20.074 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:20.084 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:20.084 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:20.084 -07 000000512 INF: MeasureProfile done
17-03-18 04:57:20.084 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:57:20.084 -07 000000512 INF: Autofocus finished
17-03-18 04:57:20.284 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:20.284 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:57:20.294 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173978371819123. ----------
17-03-18 04:57:20.294 -07 000000610 INF: Cycle	131	Tile	15	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:20.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36503, sync = True, waitForSettling = True)
17-03-18 04:57:20.294 -07 000000610 INF: Z Motor: Moving to -0.167100 mm, started at -0.173978 mm, distance = 6.88 um
17-03-18 04:57:20.294 -07 000000610 INF: FPGA: Xmit ZDACW 36503\n [Z Motor]
17-03-18 04:57:20.294 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:57:20.304 -07 000000610 INF: FPGA: 'ZDACW 36503' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:20.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:20.304 -07 000000608 INF: FPGA: Recv ZDACR 36503
17-03-18 04:57:20.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:20.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:57:20.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:20.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35303
17-03-18 04:57:20.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.484 -07 000000579 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:57:20.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.494 -07 000000474 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:57:20.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.504 -07 000000479 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:57:20.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.514 -07 000000461 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:57:20.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.524 -07 000000626 INF: FPGA: Recv ZSGSRD 35308
17-03-18 04:57:20.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.534 -07 000000581 INF: FPGA: Recv ZSGSRD 35298
17-03-18 04:57:20.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.544 -07 000000474 INF: FPGA: Recv ZSGSRD 35300
17-03-18 04:57:20.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:20.554 -07 000000608 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:57:20.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:20.564 -07 000000569 INF: FPGA: Recv ZPIEZORD 30950
17-03-18 04:57:20.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:20.574 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.6 V.
17-03-18 04:57:20.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35302 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35298 (-166.2 uncal um), Max = 35308 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:57:20.574 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35302, posNoise = 6, negNoise = 4
17-03-18 04:57:20.574 -07 000000610 INF: Z Motor: After move to -0.167100, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:20.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 04:57:20.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:20.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:20.574 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:20.574 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:20.574 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:20.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:20.574 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:20.574 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:20.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:20.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:20.574 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:20.574 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:20.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:20.574 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:20.584 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:20.584 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:20.594 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:57:20.594 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:20.594 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:57:20.594 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:57:20.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36680 150\n [Camera]
17-03-18 04:57:20.794 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:21.224 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:21.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:21.224 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:21.224 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:21.224 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) start.
17-03-18 04:57:21.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:21.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:21.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:21.224 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:21.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:57:21.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36680 814
17-03-18 04:57:21.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:21.604 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:57:21.604 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:57:21.604 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:21.614 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:57:21.614 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:57:21.614 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:21.614 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:21.614 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:21.614 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:57:21.624 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:57:21.714 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:21.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:21.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:21.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:21.774 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:21.774 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:21.774 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:57:21.774 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:21.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:21.774 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:21.774 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:21.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:57:21.964 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:21.964 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:21.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36680 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-18 04:57:21.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:21.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.16711088903958. ------
17-03-18 04:57:21.974 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:21.974 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17341 mm
17-03-18 04:57:21.974 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:21.974 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:57:21.974 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:57:21.974 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:21.974 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37881, sync = True, waitForSettling = False)
17-03-18 04:57:21.974 -07 000000581 INF: Z Motor: Moving to -0.173408 mm, started at -0.167111 mm, distance = -6.30 um
17-03-18 04:57:21.984 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:21.984 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:21.984 -07 000000579 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:57:21.994 -07 000000581 INF: FPGA: Xmit ZDACW 37881\n [Z Motor]
17-03-18 04:57:21.994 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:57:21.994 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:21.994 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:57:21.994 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:21.994 -07 000000512 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:57:22.004 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:22.004 -07 000000581 INF: FPGA: 'ZDACW 37881' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:57:22.014 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:22.024 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:22.024 -07 000000461 INF: FPGA: Recv ZDACR 37881
17-03-18 04:57:22.034 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:22.034 -07 000000581 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:57:22.174 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:57:22.174 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:57:22.174 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:22.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:57:22.174 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:57:22.174 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:22.184 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:22.184 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:57:22.184 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:57:22.194 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:57:22.204 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:22.204 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:57:22.384 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:57:22.384 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:57:22.434 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:22.434 -07 000000625 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:57:22.444 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:22.444 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:22.444 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:57:22.444 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 04:57:23.394 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:23.394 -07 000000447 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:57:23.404 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:23.404 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:23.434 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:23.434 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:23.434 -07 000000512 INF: Y Motor: Moved to 72.3481 after 1454 ms (table move)
17-03-18 04:57:23.434 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173408 mm (DAC = 37881)
17-03-18 04:57:23.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.434 -07 000000467 INF: FPGA: Recv ZSGSRD 36285
17-03-18 04:57:23.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:23.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.444 -07 000000424 INF: FPGA: Recv ZSGSRD 36282
17-03-18 04:57:23.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.454 -07 000000608 INF: FPGA: Recv ZSGSRD 36281
17-03-18 04:57:23.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.464 -07 000000382 INF: FPGA: Recv ZSGSRD 36279
17-03-18 04:57:23.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.474 -07 000000626 INF: FPGA: Recv ZSGSRD 36276
17-03-18 04:57:23.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.484 -07 000000474 INF: FPGA: Recv ZSGSRD 36285
17-03-18 04:57:23.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.494 -07 000000625 INF: FPGA: Recv ZSGSRD 36282
17-03-18 04:57:23.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.504 -07 000000608 INF: FPGA: Recv ZSGSRD 36290
17-03-18 04:57:23.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.514 -07 000000461 INF: FPGA: Recv ZSGSRD 36288
17-03-18 04:57:23.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:23.524 -07 000000579 INF: FPGA: Recv ZSGSRD 36284
17-03-18 04:57:23.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.534 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:23.534 -07 000000480 INF: FPGA: Recv ZPIEZORD 32298
17-03-18 04:57:23.544 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:23.544 -07 000000606 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.8 V.
17-03-18 04:57:23.544 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36283 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36283 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36276 (-172.5 uncal um), Max = 36290 (-172.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:57:23.544 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36283, posNoise = 7, negNoise = 7
17-03-18 04:57:23.544 -07 000000606 INF: Z Motor: After move to -0.173408, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:23.544 -07 000000606 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:57:23.544 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:23.594 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:57:23.594 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:23.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:23.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:23.594 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:23.594 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:23.594 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:23.594 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:23.594 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:23.594 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:23.604 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:23.604 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:23.614 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:57:23.614 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:57:23.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:23.664 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:23.964 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:23.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:23.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:23.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 04:57:24.004 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:24.004 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:24.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:57:24.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:57:24.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:24.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:24.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:57:24.104 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:24.104 -07 000000625 INF: Autofocus start
17-03-18 04:57:24.104 -07 000000625 INF: MeasureProfile start
17-03-18 04:57:24.104 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:24.114 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:24.114 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:24.114 -07 000000625 INF: MeasureProfile done
17-03-18 04:57:24.114 -07 000000625 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:57:24.114 -07 000000625 INF: Autofocus finished
17-03-18 04:57:24.314 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:24.314 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:24.314 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173413041150648. ----------
17-03-18 04:57:24.314 -07 000000610 INF: Cycle	131	Tile	16	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:24.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36378, sync = True, waitForSettling = True)
17-03-18 04:57:24.324 -07 000000610 INF: Z Motor: Moving to -0.166528 mm, started at -0.173413 mm, distance = 6.89 um
17-03-18 04:57:24.324 -07 000000610 INF: FPGA: Xmit ZDACW 36378\n [Z Motor]
17-03-18 04:57:24.324 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:57:24.334 -07 000000610 INF: FPGA: 'ZDACW 36378' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:24.334 -07 000000579 INF: FPGA: Recv ZDACR 36378
17-03-18 04:57:24.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:24.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.494 -07 000000447 INF: FPGA: Recv ZSGSRD 35208
17-03-18 04:57:24.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:24.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.504 -07 000000461 INF: FPGA: Recv ZSGSRD 35217
17-03-18 04:57:24.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35216
17-03-18 04:57:24.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35210
17-03-18 04:57:24.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.534 -07 000000474 INF: FPGA: Recv ZSGSRD 35211
17-03-18 04:57:24.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.544 -07 000000606 INF: FPGA: Recv ZSGSRD 35208
17-03-18 04:57:24.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35214
17-03-18 04:57:24.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35211
17-03-18 04:57:24.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:24.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.584 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.023489,
17-03-18 04:57:24.584 -07 000000461 INF: FPGA: Recv ZSGSRD 35219
17-03-18 04:57:24.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:24.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:24.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35209
17-03-18 04:57:24.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:24.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:24.634 -07 000000502 INF: FPGA: Recv ZPIEZORD 30898
17-03-18 04:57:24.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:24.644 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.5 V.
17-03-18 04:57:24.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35212 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35211 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35208 (-165.6 uncal um), Max = 35219 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:57:24.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35212, posNoise = 7, negNoise = 4
17-03-18 04:57:24.644 -07 000000610 INF: Z Motor: After move to -0.166528, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:24.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 04:57:24.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:24.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:24.644 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:24.644 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:24.644 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:24.644 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:24.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:24.644 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:24.644 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:24.644 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:24.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:57:24.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:24.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:24.644 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:24.654 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:24.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:24.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:57:24.654 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:57:24.654 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:57:24.654 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:57:24.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36555 150\n [Camera]
17-03-18 04:57:24.864 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:25.294 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:25.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:25.294 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:25.294 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:25.294 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:57:25.294 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:25.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:25.294 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:25.294 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:25.294 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:57:25.484 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36555 814
17-03-18 04:57:25.634 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:25.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:57:25.674 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:57:25.674 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:25.674 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:57:25.674 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:57:25.674 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:25.684 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:57:25.684 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:57:25.684 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:57:25.684 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:57:25.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:25.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:25.834 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:25.844 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:25.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:57:25.844 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:25.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:25.844 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:25.844 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:25.974 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:57:26.034 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:26.034 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:26.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36555 150' command took 2 ms to send, 1361 ms to get response, and 1370 ms overall
17-03-18 04:57:26.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:26.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166532709946822. ------
17-03-18 04:57:26.034 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:26.034 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17302 mm
17-03-18 04:57:26.034 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:26.044 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:26.044 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37796, sync = True, waitForSettling = False)
17-03-18 04:57:26.044 -07 000000512 INF: Z Motor: Moving to -0.173019 mm, started at -0.166533 mm, distance = -6.49 um
17-03-18 04:57:26.044 -07 000000512 INF: FPGA: Xmit ZDACW 37796\n [Z Motor]
17-03-18 04:57:26.044 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:57:26.044 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:57:26.044 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:57:26.044 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 04:57:26.054 -07 000000512 INF: FPGA: 'ZDACW 37796' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:57:26.054 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:26.064 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:26.064 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 04:57:26.074 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:26.074 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:57:26.074 -07 000000382 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:26.074 -07 000000608 INF: FPGA: Recv ZDACR 37796
17-03-18 04:57:26.074 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:26.074 -07 000000382 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:57:26.084 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:26.084 -07 000000512 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:57:26.084 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:26.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:57:26.244 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:57:26.244 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:26.244 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:26.244 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:57:26.254 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:26.254 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 04:57:26.364 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:57:26.364 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 04:57:26.364 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:26.364 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:57:26.374 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 04:57:26.454 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:57:26.454 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 04:57:26.504 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:26.514 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:57:26.514 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:26.514 -07 000000382 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:26.514 -07 000000382 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:57:26.514 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.216 mm/sec
17-03-18 04:57:26.714 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:26.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:27.464 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:27.464 -07 000000606 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:57:27.474 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:27.474 -07 000000382 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:27.504 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:27.504 -07 000000382 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:27.504 -07 000000382 INF: Y Motor: Moved to 73.1748 after 1458 ms (table move)
17-03-18 04:57:27.504 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173019 mm (DAC = 37796)
17-03-18 04:57:27.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36224
17-03-18 04:57:27.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:27.514 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.514 -07 000000479 INF: FPGA: Recv ZSGSRD 36225
17-03-18 04:57:27.524 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.524 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.524 -07 000000626 INF: FPGA: Recv ZSGSRD 36228
17-03-18 04:57:27.534 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.534 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.534 -07 000000455 INF: FPGA: Recv ZSGSRD 36227
17-03-18 04:57:27.544 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.544 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.544 -07 000000474 INF: FPGA: Recv ZSGSRD 36221
17-03-18 04:57:27.554 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.554 -07 000000625 INF: FPGA: Recv ZSGSRD 36230
17-03-18 04:57:27.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.564 -07 000000474 INF: FPGA: Recv ZSGSRD 36218
17-03-18 04:57:27.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.574 -07 000000569 INF: FPGA: Recv ZSGSRD 36223
17-03-18 04:57:27.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.584 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36221
17-03-18 04:57:27.594 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.594 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:27.594 -07 000000626 INF: FPGA: Recv ZSGSRD 36222
17-03-18 04:57:27.604 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.604 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:27.604 -07 000000467 INF: FPGA: Recv ZPIEZORD 32222
17-03-18 04:57:27.614 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:27.614 -07 000000461 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.8 V.
17-03-18 04:57:27.614 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36224 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36224 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36218 (-172.1 uncal um), Max = 36230 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:57:27.614 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36224, posNoise = 6, negNoise = 6
17-03-18 04:57:27.614 -07 000000461 INF: Z Motor: After move to -0.173019, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:27.614 -07 000000461 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:57:27.614 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:27.664 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:57:27.664 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:27.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:27.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:27.664 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:27.664 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:27.664 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:27.664 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:27.664 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:27.664 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:27.674 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:27.674 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:27.674 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:57:27.674 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:57:27.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:27.724 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:28.024 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:28.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:28.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:28.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:28.064 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:28.064 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:28.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:57:28.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:57:28.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:28.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:57:28.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:57:28.164 -07 000000581 INF: Autofocus start
17-03-18 04:57:28.164 -07 000000581 INF: MeasureProfile start
17-03-18 04:57:28.164 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:28.164 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:28.174 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:28.174 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:28.174 -07 000000581 INF: MeasureProfile done
17-03-18 04:57:28.174 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:57:28.174 -07 000000581 INF: Autofocus finished
17-03-18 04:57:28.374 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:28.374 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:28.374 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173034012634284. ----------
17-03-18 04:57:28.374 -07 000000610 INF: Cycle	131	Tile	17	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:28.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36310, sync = True, waitForSettling = True)
17-03-18 04:57:28.384 -07 000000610 INF: Z Motor: Moving to -0.166217 mm, started at -0.173034 mm, distance = 6.82 um
17-03-18 04:57:28.384 -07 000000610 INF: FPGA: Xmit ZDACW 36310\n [Z Motor]
17-03-18 04:57:28.384 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:57:28.394 -07 000000610 INF: FPGA: 'ZDACW 36310' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:28.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:28.394 -07 000000455 INF: FPGA: Recv ZDACR 36310
17-03-18 04:57:28.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:28.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.554 -07 000000382 INF: FPGA: Recv ZSGSRD 35166
17-03-18 04:57:28.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35159
17-03-18 04:57:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.574 -07 000000447 INF: FPGA: Recv ZSGSRD 35162
17-03-18 04:57:28.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.584 -07 000000618 INF: FPGA: Recv ZSGSRD 35162
17-03-18 04:57:28.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.594 -07 000000461 INF: FPGA: Recv ZSGSRD 35162
17-03-18 04:57:28.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.604 -07 000000480 INF: FPGA: Recv ZSGSRD 35166
17-03-18 04:57:28.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.614 -07 000000424 INF: FPGA: Recv ZSGSRD 35165
17-03-18 04:57:28.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.624 -07 000000625 INF: FPGA: Recv ZSGSRD 35165
17-03-18 04:57:28.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.634 -07 000000618 INF: FPGA: Recv ZSGSRD 35165
17-03-18 04:57:28.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:28.644 -07 000000569 INF: FPGA: Recv ZSGSRD 35165
17-03-18 04:57:28.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:28.654 -07 000000579 INF: FPGA: Recv ZPIEZORD 30819
17-03-18 04:57:28.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:28.664 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.6 V.
17-03-18 04:57:28.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35164 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35165 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35159 (-165.3 uncal um), Max = 35166 (-165.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:57:28.664 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35164, posNoise = 2, negNoise = 5
17-03-18 04:57:28.664 -07 000000610 INF: Z Motor: After move to -0.166217, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:28.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:57:28.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:28.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:28.664 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:28.664 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:28.674 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:28.674 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:28.674 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:28.674 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:28.674 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:28.674 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:28.674 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:28.674 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:28.674 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:57:28.674 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:28.674 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:28.674 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:28.694 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:57:28.694 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:57:28.694 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:57:28.694 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:57:28.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36487 150\n [Camera]
17-03-18 04:57:28.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:29.324 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:29.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:29.324 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:29.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:29.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:29.324 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:29.334 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:29.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:57:29.334 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:29.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:57:29.514 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36487 814
17-03-18 04:57:29.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:29.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:57:29.724 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:57:29.724 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:29.734 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:57:29.734 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:57:29.734 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:29.734 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:29.734 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:57:29.734 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:29.744 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:57:29.874 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:29.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:29.874 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:29.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:29.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:29.874 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:29.884 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:29.884 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:57:29.884 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:29.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:57:29.974 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.016692,
17-03-18 04:57:30.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:30.064 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:30.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36487 150' command took 2 ms to send, 1364 ms to get response, and 1370 ms overall
17-03-18 04:57:30.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:30.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166224347764017. ------
17-03-18 04:57:30.064 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:30.064 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17214 mm
17-03-18 04:57:30.064 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:30.184 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:30.184 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 116 ms to get response, and 116 ms overall
17-03-18 04:57:30.184 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:30.184 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:57:30.184 -07 000000479 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:57:30.194 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37604, sync = True, waitForSettling = False)
17-03-18 04:57:30.194 -07 000000424 INF: Z Motor: Moving to -0.172140 mm, started at -0.166224 mm, distance = -5.92 um
17-03-18 04:57:30.194 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:30.194 -07 000000569 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:57:30.204 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:30.204 -07 000000479 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:30.204 -07 000000479 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:30.204 -07 000000479 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:57:30.204 -07 000000424 INF: FPGA: Xmit ZDACW 37604\n [Z Motor]
17-03-18 04:57:30.204 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:57:30.214 -07 000000424 INF: FPGA: 'ZDACW 37604' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:57:30.214 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:30.214 -07 000000501 INF: FPGA: Recv ZDACR 37604
17-03-18 04:57:30.224 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:30.224 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:30.224 -07 000000424 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 04:57:30.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:57:30.274 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:57:30.274 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:30.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:57:30.274 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:57:30.274 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:30.274 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:30.274 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:30.274 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:57:30.284 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:57:30.384 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:30.384 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 04:57:30.594 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 04:57:30.594 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:57:30.634 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:30.644 -07 000000480 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:57:30.644 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:57:30.644 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:30.644 -07 000000479 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:57:30.644 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec
17-03-18 04:57:31.594 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:31.594 -07 000000424 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:57:31.604 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:31.604 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:31.624 -07 000000479 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:31.624 -07 000000479 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:31.624 -07 000000479 INF: Y Motor: Moved to 74.0068 after 1433 ms (table move)
17-03-18 04:57:31.624 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172140 mm (DAC = 37604)
17-03-18 04:57:31.624 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.634 -07 000000467 INF: FPGA: Recv ZSGSRD 36084
17-03-18 04:57:31.634 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:31.634 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36095
17-03-18 04:57:31.644 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.644 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.644 -07 000000461 INF: FPGA: Recv ZSGSRD 36083
17-03-18 04:57:31.654 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.654 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.654 -07 000000480 INF: FPGA: Recv ZSGSRD 36091
17-03-18 04:57:31.664 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.664 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.664 -07 000000501 INF: FPGA: Recv ZSGSRD 36080
17-03-18 04:57:31.674 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.674 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.674 -07 000000581 INF: FPGA: Recv ZSGSRD 36088
17-03-18 04:57:31.684 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.684 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.684 -07 000000512 INF: FPGA: Recv ZSGSRD 36086
17-03-18 04:57:31.694 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.694 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.694 -07 000000618 INF: FPGA: Recv ZSGSRD 36086
17-03-18 04:57:31.704 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.704 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.704 -07 000000474 INF: FPGA: Recv ZSGSRD 36091
17-03-18 04:57:31.714 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:31.714 -07 000000625 INF: FPGA: Recv ZSGSRD 36090
17-03-18 04:57:31.714 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:31.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:31.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.724 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:31.724 -07 000000608 INF: FPGA: Recv ZPIEZORD 32047
17-03-18 04:57:31.734 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:31.734 -07 000000626 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.9 V.
17-03-18 04:57:31.734 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36087 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36087 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36080 (-171.2 uncal um), Max = 36095 (-171.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:57:31.734 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36087, posNoise = 8, negNoise = 7
17-03-18 04:57:31.734 -07 000000626 INF: Z Motor: After move to -0.172140, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:31.734 -07 000000626 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-18 04:57:31.734 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:31.784 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1710 ms
17-03-18 04:57:31.784 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:31.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:31.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:31.784 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:31.784 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:31.784 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:31.784 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:31.784 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:31.784 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:31.794 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:31.794 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:31.804 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:57:31.804 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:57:31.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:31.854 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:57:32.154 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:57:32.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:57:32.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:32.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:32.194 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:32.194 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:32.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:57:32.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:57:32.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:32.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:57:32.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:57:32.294 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:32.294 -07 000000382 INF: Autofocus start
17-03-18 04:57:32.294 -07 000000382 INF: MeasureProfile start
17-03-18 04:57:32.294 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:32.304 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:32.304 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:32.304 -07 000000382 INF: MeasureProfile done
17-03-18 04:57:32.304 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:57:32.304 -07 000000382 INF: Autofocus finished
17-03-18 04:57:32.504 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:32.504 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:32.504 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172153895570863. ----------
17-03-18 04:57:32.514 -07 000000610 INF: Cycle	131	Tile	18	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:32.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36119, sync = True, waitForSettling = True)
17-03-18 04:57:32.514 -07 000000610 INF: Z Motor: Moving to -0.165342 mm, started at -0.172154 mm, distance = 6.81 um
17-03-18 04:57:32.514 -07 000000610 INF: FPGA: Xmit ZDACW 36119\n [Z Motor]
17-03-18 04:57:32.514 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:57:32.524 -07 000000610 INF: FPGA: 'ZDACW 36119' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:32.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:32.524 -07 000000424 INF: FPGA: Recv ZDACR 36119
17-03-18 04:57:32.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:32.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.684 -07 000000579 INF: FPGA: Recv ZSGSRD 35036
17-03-18 04:57:32.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:32.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35028
17-03-18 04:57:32.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.704 -07 000000447 INF: FPGA: Recv ZSGSRD 35031
17-03-18 04:57:32.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.714 -07 000000501 INF: FPGA: Recv ZSGSRD 35023
17-03-18 04:57:32.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.724 -07 000000502 INF: FPGA: Recv ZSGSRD 35029
17-03-18 04:57:32.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.734 -07 000000474 INF: FPGA: Recv ZSGSRD 35031
17-03-18 04:57:32.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35022
17-03-18 04:57:32.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35033
17-03-18 04:57:32.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.764 -07 000000608 INF: FPGA: Recv ZSGSRD 35029
17-03-18 04:57:32.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:32.774 -07 000000447 INF: FPGA: Recv ZSGSRD 35030
17-03-18 04:57:32.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:32.784 -07 000000474 INF: FPGA: Recv ZPIEZORD 30667
17-03-18 04:57:32.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:32.794 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.511 V. Piezo Error = -9.6 V.
17-03-18 04:57:32.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35029 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35030 (-164.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35022 (-164.4 uncal um), Max = 35036 (-164.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:57:32.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35029, posNoise = 7, negNoise = 7
17-03-18 04:57:32.794 -07 000000610 INF: Z Motor: After move to -0.165342, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:32.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:57:32.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:32.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:32.794 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:32.794 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:32.794 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:32.794 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:32.794 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:32.794 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:32.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:32.804 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:32.804 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:32.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:32.804 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:32.804 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:32.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:32.804 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:32.814 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:57:32.814 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:57:32.814 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:57:32.814 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:57:32.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36295 150\n [Camera]
17-03-18 04:57:33.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:33.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 04:57:33.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 04:57:33.454 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:33.454 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 04:57:33.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 04:57:33.454 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:33.454 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:57:33.454 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:33.454 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:33.454 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:57:33.634 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36295 814
17-03-18 04:57:33.784 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:33.834 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:57:33.834 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:57:33.834 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:33.834 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:57:33.834 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:57:33.834 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:33.834 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:33.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:57:33.834 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:33.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:57:33.994 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:33.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:33.994 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:33.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:33.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:57:33.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:33.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:33.994 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:33.994 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:33.994 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:57:34.184 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:34.184 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:34.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36295 150' command took 2 ms to send, 1367 ms to get response, and 1370 ms overall
17-03-18 04:57:34.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:57:34.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.16535707912488. ------
17-03-18 04:57:34.194 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17173 mm
17-03-18 04:57:34.194 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:34.194 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:34.194 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:34.194 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37514, sync = True, waitForSettling = False)
17-03-18 04:57:34.194 -07 000000512 INF: Z Motor: Moving to -0.171728 mm, started at -0.165357 mm, distance = -6.37 um
17-03-18 04:57:34.194 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:57:34.194 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 04:57:34.204 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:34.204 -07 000000512 INF: FPGA: Xmit ZDACW 37514\n [Z Motor]
17-03-18 04:57:34.204 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:57:34.214 -07 000000512 INF: FPGA: 'ZDACW 37514' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:34.214 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:34.224 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:34.224 -07 000000424 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:57:34.234 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:34.234 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:57:34.234 -07 000000502 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:34.234 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:34.234 -07 000000502 INF: Y Motor: Moving 1353 steps-32
17-03-18 04:57:34.234 -07 000000581 INF: FPGA: Recv ZDACR 37514
17-03-18 04:57:34.244 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:34.244 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:57:34.244 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:34.394 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:57:34.394 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:57:34.394 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:34.394 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:57:34.394 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:57:34.394 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:34.404 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:34.404 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:34.404 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:57:34.404 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:57:34.414 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:34.414 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:57:34.624 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:57:34.624 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-18 04:57:34.654 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:34.654 -07 000000579 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:57:34.664 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:34.664 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:34.664 -07 000000502 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:57:34.664 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.846 mm, average velocity = 2.163 mm/sec
17-03-18 04:57:35.334 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.988112,
17-03-18 04:57:35.614 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:35.614 -07 000000474 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:57:35.624 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:35.624 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:35.634 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:35.634 -07 000000502 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:35.634 -07 000000502 INF: Y Motor: Moved to 74.8306 after 1440 ms (table move)
17-03-18 04:57:35.644 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171728 mm (DAC = 37514)
17-03-18 04:57:35.644 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.644 -07 000000447 INF: FPGA: Recv ZSGSRD 36021
17-03-18 04:57:35.654 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:35.654 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.654 -07 000000455 INF: FPGA: Recv ZSGSRD 36012
17-03-18 04:57:35.664 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.664 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.664 -07 000000501 INF: FPGA: Recv ZSGSRD 36009
17-03-18 04:57:35.674 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.674 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.674 -07 000000579 INF: FPGA: Recv ZSGSRD 36029
17-03-18 04:57:35.684 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.684 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36022
17-03-18 04:57:35.694 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.694 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.694 -07 000000382 INF: FPGA: Recv ZSGSRD 36016
17-03-18 04:57:35.704 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.704 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.704 -07 000000455 INF: FPGA: Recv ZSGSRD 36029
17-03-18 04:57:35.714 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.714 -07 000000581 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:57:35.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.724 -07 000000502 INF: FPGA: Recv ZSGSRD 36020
17-03-18 04:57:35.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.734 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:35.734 -07 000000424 INF: FPGA: Recv ZSGSRD 36016
17-03-18 04:57:35.744 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.744 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:35.744 -07 000000474 INF: FPGA: Recv ZPIEZORD 32041
17-03-18 04:57:35.754 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:35.754 -07 000000626 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.8 V.
17-03-18 04:57:35.754 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36019 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36020 (-170.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36009 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:57:35.754 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36019, posNoise = 10, negNoise = 10
17-03-18 04:57:35.754 -07 000000626 INF: Z Motor: After move to -0.171728, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:35.754 -07 000000626 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-18 04:57:35.754 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:35.804 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 04:57:35.804 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:35.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:35.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:35.804 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:35.804 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:35.804 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:35.804 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:35.804 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:35.804 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:35.814 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:35.814 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:35.814 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:57:35.814 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:57:35.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:35.864 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:36.164 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:36.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:36.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:36.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 04:57:36.204 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:36.204 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:36.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:57:36.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:57:36.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:36.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:36.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:57:36.304 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:36.304 -07 000000467 INF: Autofocus start
17-03-18 04:57:36.304 -07 000000467 INF: MeasureProfile start
17-03-18 04:57:36.304 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:36.314 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:36.314 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:36.314 -07 000000467 INF: MeasureProfile done
17-03-18 04:57:36.314 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:57:36.314 -07 000000467 INF: Autofocus finished
17-03-18 04:57:36.514 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:36.514 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:36.514 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171717049145223. ----------
17-03-18 04:57:36.524 -07 000000610 INF: Cycle	131	Tile	19	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:36.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36011, sync = True, waitForSettling = True)
17-03-18 04:57:36.524 -07 000000610 INF: Z Motor: Moving to -0.164848 mm, started at -0.171717 mm, distance = 6.87 um
17-03-18 04:57:36.524 -07 000000610 INF: FPGA: Xmit ZDACW 36011\n [Z Motor]
17-03-18 04:57:36.524 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:57:36.534 -07 000000610 INF: FPGA: 'ZDACW 36011' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:36.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:36.534 -07 000000461 INF: FPGA: Recv ZDACR 36011
17-03-18 04:57:36.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:36.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.694 -07 000000579 INF: FPGA: Recv ZSGSRD 34952
17-03-18 04:57:36.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.704 -07 000000480 INF: FPGA: Recv ZSGSRD 34950
17-03-18 04:57:36.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.714 -07 000000502 INF: FPGA: Recv ZSGSRD 34952
17-03-18 04:57:36.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:36.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:36.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.724 -07 000000480 INF: FPGA: Recv ZSGSRD 34950
17-03-18 04:57:36.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.734 -07 000000618 INF: FPGA: Recv ZSGSRD 34943
17-03-18 04:57:36.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.744 -07 000000606 INF: FPGA: Recv ZSGSRD 34954
17-03-18 04:57:36.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.754 -07 000000501 INF: FPGA: Recv ZSGSRD 34952
17-03-18 04:57:36.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.764 -07 000000424 INF: FPGA: Recv ZSGSRD 34952
17-03-18 04:57:36.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.774 -07 000000447 INF: FPGA: Recv ZSGSRD 34952
17-03-18 04:57:36.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:36.784 -07 000000581 INF: FPGA: Recv ZSGSRD 34952
17-03-18 04:57:36.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:36.794 -07 000000382 INF: FPGA: Recv ZPIEZORD 30608
17-03-18 04:57:36.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:36.804 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.495 V. Piezo Error = -9.6 V.
17-03-18 04:57:36.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34951 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34952 (-164.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34943 (-163.9 uncal um), Max = 34954 (-164.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:57:36.804 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34951, posNoise = 3, negNoise = 8
17-03-18 04:57:36.804 -07 000000610 INF: Z Motor: After move to -0.164848, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:36.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:57:36.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:36.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:36.804 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:36.804 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:36.804 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:36.804 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:36.804 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:36.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:36.804 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:57:36.804 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:36.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:36.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:36.814 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:36.814 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:36.814 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:36.814 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:36.824 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:57:36.824 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:36.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:57:36.824 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:36.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36187 150\n [Camera]
17-03-18 04:57:37.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:37.454 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:37.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:37.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:37.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:37.454 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:37.454 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:37.454 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2623718672, 0x0, 391868352) start.
17-03-18 04:57:37.454 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:37.454 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:37.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:57:37.644 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36187 814
17-03-18 04:57:37.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:37.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:57:37.854 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:57:37.854 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:37.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2623718672, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:57:37.854 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:57:37.854 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:37.864 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:37.864 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:37.864 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:57:37.874 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:57:38.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:38.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:38.004 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:38.004 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:38.004 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:57:38.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:38.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:38.004 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:38.004 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:38.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:57:38.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:57:38.194 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:38.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36187 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-18 04:57:38.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:57:38.404 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:57:38.404 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:38.404 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:57:38.404 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:57:38.414 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:38.414 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:38.414 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:38.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:57:38.414 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:57:38.424 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:57:38.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:57:38.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:57:38.504 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:57:38.634 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:57:38.634 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:57:38.634 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 04:57:38.644 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:38.644 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:57:39.144 -07 000000579 INF: FPGA: Recv EMIN
17-03-18 04:57:39.144 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:57:39.144 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:57:39.144 -07 000000581 INF: FPGA: Recv EMCUR 
17-03-18 04:57:39.154 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:39.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:57:39.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164855990577822. ------
17-03-18 04:57:39.154 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:39.154 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13920 mm
17-03-18 04:57:39.154 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:39.154 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:39.154 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:57:39.164 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:39.164 -07 000000625 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 04:57:39.164 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:39.164 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30408, sync = True, waitForSettling = False)
17-03-18 04:57:39.164 -07 000000579 INF: Z Motor: Moving to -0.139199 mm, started at -0.164856 mm, distance = 25.66 um
17-03-18 04:57:39.164 -07 000000502 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:57:39.174 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:57:39.174 -07 000000579 INF: FPGA: Xmit ZDACW 30408\n [Z Motor]
17-03-18 04:57:39.174 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:39.174 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:57:39.174 -07 000000625 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:57:39.174 -07 000000625 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:57:39.184 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:39.184 -07 000000579 INF: FPGA: 'ZDACW 30408' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:57:39.194 -07 000000625 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:57:39.204 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:39.204 -07 000000608 INF: FPGA: Recv ZDACR 30408
17-03-18 04:57:39.214 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:39.214 -07 000000579 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:57:39.384 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:39.384 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:57:40.694 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.999021,
17-03-18 04:57:40.814 -07 000000618 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 04:57:40.814 -07 000000625 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1644 ms overall
17-03-18 04:57:40.814 -07 000000625 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:57:40.814 -07 000000625 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:57:40.814 -07 000000625 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.918 mm, average velocity = 9.074 mm/sec
17-03-18 04:57:41.714 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:41.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:43.674 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:43.674 -07 000000581 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:57:43.684 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.684 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:43.724 -07 000000625 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:43.724 -07 000000625 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:57:43.724 -07 000000625 INF: Y Motor: Moved to 59.9097 after 4560 ms
17-03-18 04:57:43.724 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139199 mm (DAC = 30408)
17-03-18 04:57:43.724 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.724 -07 000000502 INF: FPGA: Recv ZSGSRD 30961
17-03-18 04:57:43.734 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:43.734 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.734 -07 000000455 INF: FPGA: Recv ZSGSRD 30952
17-03-18 04:57:43.744 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.744 -07 000000502 INF: FPGA: Recv ZSGSRD 30955
17-03-18 04:57:43.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.754 -07 000000606 INF: FPGA: Recv ZSGSRD 30958
17-03-18 04:57:43.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.764 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.764 -07 000000467 INF: FPGA: Recv ZSGSRD 30959
17-03-18 04:57:43.774 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.774 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.774 -07 000000424 INF: FPGA: Recv ZSGSRD 30964
17-03-18 04:57:43.784 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.784 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.784 -07 000000626 INF: FPGA: Recv ZSGSRD 30955
17-03-18 04:57:43.794 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.794 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30962
17-03-18 04:57:43.804 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.804 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.804 -07 000000512 INF: FPGA: Recv ZSGSRD 30958
17-03-18 04:57:43.814 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.814 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:43.814 -07 000000447 INF: FPGA: Recv ZSGSRD 30957
17-03-18 04:57:43.824 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.824 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:43.824 -07 000000382 INF: FPGA: Recv ZPIEZORD 26407
17-03-18 04:57:43.834 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:43.834 -07 000000461 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -10.0 V.
17-03-18 04:57:43.834 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30958 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30952 (-138.4 uncal um), Max = 30964 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:57:43.834 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30958, posNoise = 6, negNoise = 6
17-03-18 04:57:43.834 -07 000000461 INF: Z Motor: After move to -0.139199, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:43.834 -07 000000461 INF: Z Motor: Settle wait time = 4562 ms, measure time = 105 ms (allowed 150 ms), total time = 4667 ms
17-03-18 04:57:43.834 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:43.884 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 04:57:43.884 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:43.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:43.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:43.884 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:43.884 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:43.884 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:43.884 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:43.894 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:43.894 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:57:43.914 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 04:57:43.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:43.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:43.914 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:43.924 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:57:43.924 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 04:57:43.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:43.964 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:44.264 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:44.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:44.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:44.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:44.304 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:44.304 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:44.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:57:44.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:57:44.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:44.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:57:44.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:57:44.404 -07 000000467 INF: Image SNR check: start
17-03-18 04:57:44.404 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:44.404 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:44.414 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:44.414 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:44.414 -07 000000467 INF: Image SNR check: pass  [peak (Max-Min)=122.05]
17-03-18 04:57:44.414 -07 000000467 INF: Autofocus start
17-03-18 04:57:44.414 -07 000000467 INF: MeasureProfile start
17-03-18 04:57:44.434 -07 000000467 INF: MeasureProfile done
17-03-18 04:57:44.434 -07 000000467 INF: X=23  Z correction [um]=0.08669062
17-03-18 04:57:44.434 -07 000000467 INF: Autofocus finished
17-03-18 04:57:44.614 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:44.614 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:44.614 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139204111495771. ----------
17-03-18 04:57:44.614 -07 000000610 INF: Cycle	131	Tile	1	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:44.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28939, sync = True, waitForSettling = True)
17-03-18 04:57:44.624 -07 000000610 INF: Z Motor: Moving to -0.132474 mm, started at -0.139204 mm, distance = 6.73 um
17-03-18 04:57:44.624 -07 000000610 INF: FPGA: Xmit ZDACW 28939\n [Z Motor]
17-03-18 04:57:44.624 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:57:44.634 -07 000000610 INF: FPGA: 'ZDACW 28939' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:44.634 -07 000000479 INF: FPGA: Recv ZDACR 28939
17-03-18 04:57:44.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:44.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.794 -07 000000474 INF: FPGA: Recv ZSGSRD 29913
17-03-18 04:57:44.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.804 -07 000000424 INF: FPGA: Recv ZSGSRD 29913
17-03-18 04:57:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.814 -07 000000569 INF: FPGA: Recv ZSGSRD 29913
17-03-18 04:57:44.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.824 -07 000000455 INF: FPGA: Recv ZSGSRD 29909
17-03-18 04:57:44.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.834 -07 000000467 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:57:44.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29915
17-03-18 04:57:44.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.854 -07 000000581 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:57:44.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.864 -07 000000569 INF: FPGA: Recv ZSGSRD 29909
17-03-18 04:57:44.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.874 -07 000000479 INF: FPGA: Recv ZSGSRD 29915
17-03-18 04:57:44.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:44.884 -07 000000480 INF: FPGA: Recv ZSGSRD 29914
17-03-18 04:57:44.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:44.894 -07 000000474 INF: FPGA: Recv ZPIEZORD 25288
17-03-18 04:57:44.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:44.904 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.1 V.
17-03-18 04:57:44.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29912 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29913 (-131.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29909 (-131.7 uncal um), Max = 29915 (-131.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:57:44.904 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29912, posNoise = 3, negNoise = 3
17-03-18 04:57:44.904 -07 000000610 INF: Z Motor: After move to -0.132474, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:44.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:57:44.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:44.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:44.904 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:44.904 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:44.904 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:44.904 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:44.904 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:44.904 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:44.904 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:44.904 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:57:44.904 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:44.904 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:44.904 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:44.904 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:44.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:57:44.924 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:44.924 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-18 04:57:44.924 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:44.924 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:57:44.924 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:44.934 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:57:44.934 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 04:57:44.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29116 150\n [Camera]
17-03-18 04:57:45.134 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:45.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:45.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:45.564 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:45.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:45.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:45.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:45.574 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:45.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) start.
17-03-18 04:57:45.584 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:45.584 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) start.
17-03-18 04:57:45.764 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29116 814
17-03-18 04:57:45.914 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:45.974 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:57:45.974 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:57:45.974 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:45.974 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:57:45.974 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:57:45.974 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:45.974 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:45.974 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:57:45.974 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:45.984 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:57:46.074 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.99219,
17-03-18 04:57:46.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:46.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:46.114 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:46.114 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:46.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:57:46.124 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:46.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:46.124 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:46.124 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:46.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:57:46.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:57:46.304 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:46.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29116 150' command took 2 ms to send, 1359 ms to get response, and 1369 ms overall
17-03-18 04:57:46.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:57:46.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132484385595489. ------
17-03-18 04:57:46.314 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:46.314 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13891 mm
17-03-18 04:57:46.314 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:46.314 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:57:46.314 -07 000000625 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 04:57:46.314 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:46.314 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30344, sync = True, waitForSettling = False)
17-03-18 04:57:46.314 -07 000000501 INF: Z Motor: Moving to -0.138906 mm, started at -0.132484 mm, distance = -6.42 um
17-03-18 04:57:46.434 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:46.434 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 04:57:46.444 -07 000000501 INF: FPGA: Xmit ZDACW 30344\n [Z Motor]
17-03-18 04:57:46.444 -07 000000512 INF: FPGA: Recv YRDPOS 122695
17-03-18 04:57:46.444 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 122 ms overall
17-03-18 04:57:46.444 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:46.444 -07 000000625 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:46.444 -07 000000625 INF: Y Motor: Moving 1333 steps0
17-03-18 04:57:46.444 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:57:46.454 -07 000000501 INF: FPGA: 'ZDACW 30344' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:57:46.454 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:46.464 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:46.474 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:46.474 -07 000000480 INF: FPGA: Recv ZDACR 30344
17-03-18 04:57:46.484 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:46.484 -07 000000501 INF: Z Motor: MoveAbsStepped took 161 ms (did NOT wait for settling yet))
17-03-18 04:57:46.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:57:46.514 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:57:46.514 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:46.514 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:57:46.514 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:57:46.514 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:46.524 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:46.524 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:46.524 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:57:46.534 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:57:46.654 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:46.654 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-18 04:57:46.714 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:46.834 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:57:46.834 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 04:57:46.874 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:46.884 -07 000000455 INF: FPGA: Recv YRDPOS 124378
17-03-18 04:57:46.884 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:57:46.884 -07 000000625 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:46.884 -07 000000625 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:57:46.884 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.833 mm, average velocity = 2.103 mm/sec
17-03-18 04:57:47.834 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:47.834 -07 000000447 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:57:47.844 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:47.844 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:47.874 -07 000000625 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:47.874 -07 000000625 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:57:47.874 -07 000000625 INF: Y Motor: Moved to 60.7319 after 1555 ms (table move)
17-03-18 04:57:47.874 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138906 mm (DAC = 30344)
17-03-18 04:57:47.874 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.874 -07 000000382 INF: FPGA: Recv ZSGSRD 30916
17-03-18 04:57:47.884 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:47.884 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.884 -07 000000606 INF: FPGA: Recv ZSGSRD 30916
17-03-18 04:57:47.894 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.894 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.894 -07 000000455 INF: FPGA: Recv ZSGSRD 30910
17-03-18 04:57:47.904 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.904 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.904 -07 000000501 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:57:47.914 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.914 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.914 -07 000000625 INF: FPGA: Recv ZSGSRD 30910
17-03-18 04:57:47.924 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.924 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.924 -07 000000479 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:57:47.934 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.934 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.934 -07 000000606 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:57:47.944 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.944 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.944 -07 000000569 INF: FPGA: Recv ZSGSRD 30922
17-03-18 04:57:47.954 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.954 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30918
17-03-18 04:57:47.964 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.964 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:47.964 -07 000000625 INF: FPGA: Recv ZSGSRD 30917
17-03-18 04:57:47.974 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.974 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:47.974 -07 000000618 INF: FPGA: Recv ZPIEZORD 26659
17-03-18 04:57:47.984 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:47.984 -07 000000626 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.4 V.
17-03-18 04:57:47.984 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30912 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30913 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30901 (-138.0 uncal um), Max = 30922 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:57:47.984 -07 000000626 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30912, posNoise = 10, negNoise = 11
17-03-18 04:57:47.984 -07 000000626 INF: Z Motor: After move to -0.138906, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:47.984 -07 000000626 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-18 04:57:47.984 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:48.034 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-18 04:57:48.034 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:48.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:48.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:48.034 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:48.034 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:48.034 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:48.034 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:48.034 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:48.034 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:48.044 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:48.044 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:48.054 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:57:48.054 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:57:48.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:48.104 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:48.404 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:48.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:48.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:48.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:57:48.444 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:48.444 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:48.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:57:48.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:57:48.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:48.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:48.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:57:48.544 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:48.544 -07 000000501 INF: Autofocus start
17-03-18 04:57:48.544 -07 000000501 INF: MeasureProfile start
17-03-18 04:57:48.544 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:48.554 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:48.554 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:48.554 -07 000000501 INF: MeasureProfile done
17-03-18 04:57:48.554 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:57:48.554 -07 000000501 INF: Autofocus finished
17-03-18 04:57:48.754 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:48.754 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:48.754 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.13890859773725. ----------
17-03-18 04:57:48.754 -07 000000610 INF: Cycle	131	Tile	2	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:48.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28839, sync = True, waitForSettling = True)
17-03-18 04:57:48.764 -07 000000610 INF: Z Motor: Moving to -0.132016 mm, started at -0.138909 mm, distance = 6.89 um
17-03-18 04:57:48.764 -07 000000610 INF: FPGA: Xmit ZDACW 28839\n [Z Motor]
17-03-18 04:57:48.764 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:57:48.774 -07 000000610 INF: FPGA: 'ZDACW 28839' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:48.774 -07 000000424 INF: FPGA: Recv ZDACR 28839
17-03-18 04:57:48.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:57:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.944 -07 000000480 INF: FPGA: Recv ZSGSRD 29839
17-03-18 04:57:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.954 -07 000000606 INF: FPGA: Recv ZSGSRD 29836
17-03-18 04:57:48.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.964 -07 000000461 INF: FPGA: Recv ZSGSRD 29839
17-03-18 04:57:48.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.974 -07 000000579 INF: FPGA: Recv ZSGSRD 29843
17-03-18 04:57:48.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.984 -07 000000608 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:57:48.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:48.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:48.994 -07 000000474 INF: FPGA: Recv ZSGSRD 29840
17-03-18 04:57:49.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:49.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:49.004 -07 000000479 INF: FPGA: Recv ZSGSRD 29841
17-03-18 04:57:49.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:49.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:49.014 -07 000000618 INF: FPGA: Recv ZSGSRD 29840
17-03-18 04:57:49.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:49.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:49.024 -07 000000626 INF: FPGA: Recv ZSGSRD 29834
17-03-18 04:57:49.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:49.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:49.034 -07 000000447 INF: FPGA: Recv ZPIEZORD 25212
17-03-18 04:57:49.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:49.044 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.1 V.
17-03-18 04:57:49.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29840 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29840 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29847 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:57:49.044 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29840, posNoise = 7, negNoise = 6
17-03-18 04:57:49.044 -07 000000610 INF: Z Motor: After move to -0.132016, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:49.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:57:49.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:49.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:49.044 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:49.044 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:49.044 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:49.044 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:49.044 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:49.044 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:49.044 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:49.044 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:49.044 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:49.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:49.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:49.054 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:49.054 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:49.054 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:49.064 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:57:49.064 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:57:49.064 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:57:49.064 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:57:49.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29016 150\n [Camera]
17-03-18 04:57:49.264 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:49.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:49.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:49.694 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:49.694 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:49.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) start.
17-03-18 04:57:49.704 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:49.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:49.704 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:49.704 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:49.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) start.
17-03-18 04:57:49.894 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29016 814
17-03-18 04:57:50.044 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:50.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:57:50.094 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:57:50.094 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:50.104 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:57:50.104 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:57:50.104 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:50.104 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:57:50.104 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:50.104 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:50.114 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:57:50.244 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:50.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:50.244 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:50.244 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:50.244 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:57:50.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:50.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:50.254 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:50.254 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:50.254 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:57:50.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:50.434 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:50.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29016 150' command took 2 ms to send, 1359 ms to get response, and 1370 ms overall
17-03-18 04:57:50.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:57:50.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132021842321282. ------
17-03-18 04:57:50.444 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:50.444 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13885 mm
17-03-18 04:57:50.444 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:50.444 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30331, sync = True, waitForSettling = False)
17-03-18 04:57:50.444 -07 000000626 INF: Z Motor: Moving to -0.138846 mm, started at -0.132022 mm, distance = -6.82 um
17-03-18 04:57:50.444 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:57:50.444 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 04:57:50.454 -07 000000626 INF: FPGA: Xmit ZDACW 30331\n [Z Motor]
17-03-18 04:57:50.454 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:50.454 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:57:50.454 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:57:50.464 -07 000000626 INF: FPGA: 'ZDACW 30331' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:50.464 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:50.474 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:50.474 -07 000000474 INF: FPGA: Recv YRDPOS 124379
17-03-18 04:57:50.484 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:57:50.484 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:50.484 -07 000000480 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:50.484 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:50.484 -07 000000480 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:57:50.484 -07 000000569 INF: FPGA: Recv ZDACR 30331
17-03-18 04:57:50.494 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:50.494 -07 000000626 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:57:50.494 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:50.654 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:57:50.654 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:57:50.654 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:50.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:57:50.654 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:57:50.654 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:50.654 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:50.654 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:57:50.654 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:57:50.664 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:50.664 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 04:57:50.664 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:57:50.864 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:57:50.864 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 04:57:50.914 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:50.924 -07 000000502 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:57:50.924 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:57:50.924 -07 000000480 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:50.924 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:57:50.924 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.167 mm/sec
17-03-18 04:57:51.434 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.997626,
17-03-18 04:57:51.714 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:51.874 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:51.874 -07 000000467 INF: FPGA: Recv YRDPOS 126080
17-03-18 04:57:51.884 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:51.884 -07 000000480 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:51.914 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:51.914 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:51.914 -07 000000480 INF: Y Motor: Moved to 61.5625 after 1461 ms (table move)
17-03-18 04:57:51.914 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138846 mm (DAC = 30331)
17-03-18 04:57:51.914 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.914 -07 000000455 INF: FPGA: Recv ZSGSRD 30914
17-03-18 04:57:51.924 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:51.924 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.924 -07 000000461 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:57:51.934 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.934 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.934 -07 000000512 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:57:51.944 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.944 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.944 -07 000000447 INF: FPGA: Recv ZSGSRD 30896
17-03-18 04:57:51.954 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.954 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.954 -07 000000569 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:57:51.964 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.964 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.964 -07 000000382 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:57:51.974 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.974 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:57:51.984 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.984 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.984 -07 000000424 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:57:51.994 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:51.994 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:51.994 -07 000000502 INF: FPGA: Recv ZSGSRD 30911
17-03-18 04:57:52.004 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:52.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:52.004 -07 000000479 INF: FPGA: Recv ZSGSRD 30911
17-03-18 04:57:52.014 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:52.014 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:52.014 -07 000000474 INF: FPGA: Recv ZPIEZORD 26679
17-03-18 04:57:52.024 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:52.024 -07 000000608 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.3 V.
17-03-18 04:57:52.024 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30906 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30906 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30896 (-138.0 uncal um), Max = 30914 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:57:52.024 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30906, posNoise = 8, negNoise = 10
17-03-18 04:57:52.024 -07 000000608 INF: Z Motor: After move to -0.138846, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:52.024 -07 000000608 INF: Z Motor: Settle wait time = 1465 ms, measure time = 106 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:57:52.024 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:52.074 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:57:52.074 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:52.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:52.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:52.074 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:52.074 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:52.074 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:52.074 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:52.074 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:52.074 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:52.084 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:52.084 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:52.084 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:57:52.084 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:57:52.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:52.134 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:52.434 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:52.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:52.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:52.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 04:57:52.474 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:52.474 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:52.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:57:52.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:57:52.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:52.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:57:52.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:57:52.574 -07 000000512 INF: Autofocus start
17-03-18 04:57:52.574 -07 000000512 INF: MeasureProfile start
17-03-18 04:57:52.574 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:52.574 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:52.584 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:57:52.584 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:52.584 -07 000000512 INF: MeasureProfile done
17-03-18 04:57:52.584 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:57:52.584 -07 000000512 INF: Autofocus finished
17-03-18 04:57:52.784 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:52.784 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:57:52.784 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138870052464399. ----------
17-03-18 04:57:52.784 -07 000000610 INF: Cycle	131	Tile	3	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:52.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28855, sync = True, waitForSettling = True)
17-03-18 04:57:52.794 -07 000000610 INF: Z Motor: Moving to -0.132090 mm, started at -0.138870 mm, distance = 6.78 um
17-03-18 04:57:52.794 -07 000000610 INF: FPGA: Xmit ZDACW 28855\n [Z Motor]
17-03-18 04:57:52.794 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:57:52.804 -07 000000610 INF: FPGA: 'ZDACW 28855' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:57:52.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:52.804 -07 000000461 INF: FPGA: Recv ZDACR 28855
17-03-18 04:57:52.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:52.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:52.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:52.964 -07 000000447 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:57:52.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:52.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:52.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29855
17-03-18 04:57:52.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:52.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:52.984 -07 000000480 INF: FPGA: Recv ZSGSRD 29847
17-03-18 04:57:52.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:52.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:52.994 -07 000000606 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:57:53.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:53.004 -07 000000618 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:57:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:53.014 -07 000000569 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:57:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:53.024 -07 000000512 INF: FPGA: Recv ZSGSRD 29851
17-03-18 04:57:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:53.034 -07 000000502 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:57:53.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:53.044 -07 000000501 INF: FPGA: Recv ZSGSRD 29853
17-03-18 04:57:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:53.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:57:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:53.064 -07 000000447 INF: FPGA: Recv ZPIEZORD 25299
17-03-18 04:57:53.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:53.074 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.0 V.
17-03-18 04:57:53.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29852 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29845 (-131.3 uncal um), Max = 29857 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:57:53.074 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29852, posNoise = 5, negNoise = 7
17-03-18 04:57:53.074 -07 000000610 INF: Z Motor: After move to -0.132090, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:53.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:57:53.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:53.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:53.074 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:53.074 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:53.074 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:53.074 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:53.074 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:53.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:53.074 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:57:53.074 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:53.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:57:53.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:53.084 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:53.084 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:53.084 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:57:53.084 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:53.094 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 04:57:53.094 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:57:53.094 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 04:57:53.094 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:57:53.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29032 150\n [Camera]
17-03-18 04:57:53.304 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:53.734 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:53.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:53.734 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:53.734 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:53.734 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:57:53.734 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:53.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:53.734 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:53.734 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:53.734 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:57:53.924 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29032 814
17-03-18 04:57:54.074 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:54.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:57:54.124 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:57:54.124 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:54.124 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:57:54.124 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:57:54.124 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:54.124 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:54.124 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:54.124 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:57:54.134 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:57:54.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:54.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:54.284 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:54.284 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:54.284 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:57:54.284 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:54.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:54.284 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:54.284 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:54.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:57:54.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:54.474 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:54.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29032 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-18 04:57:54.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:57:54.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132098932866983. ------
17-03-18 04:57:54.474 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:54.474 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13847 mm
17-03-18 04:57:54.474 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:54.474 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30248, sync = True, waitForSettling = False)
17-03-18 04:57:54.474 -07 000000512 INF: Z Motor: Moving to -0.138466 mm, started at -0.132099 mm, distance = -6.37 um
17-03-18 04:57:54.474 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:54.484 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:57:54.484 -07 000000512 INF: FPGA: Xmit ZDACW 30248\n [Z Motor]
17-03-18 04:57:54.484 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:54.484 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 04:57:54.484 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 04:57:54.494 -07 000000512 INF: FPGA: 'ZDACW 30248' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:57:54.494 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:54.504 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:54.504 -07 000000581 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:57:54.514 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:54.514 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:57:54.514 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:54.514 -07 000000502 INF: FPGA: Recv ZDACR 30248
17-03-18 04:57:54.514 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:54.514 -07 000000626 INF: Y Motor: Moving 1343 steps-21
17-03-18 04:57:54.524 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:54.524 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:57:54.524 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:54.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:57:54.664 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:57:54.664 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:54.674 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:54.674 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:57:54.674 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:57:54.674 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:54.674 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:57:54.674 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:57:54.674 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:57:54.694 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:54.694 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:57:54.894 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:57:54.894 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 04:57:54.944 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:54.954 -07 000000382 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:57:54.954 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 04:57:54.954 -07 000000626 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:54.954 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:57:54.954 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.193 mm/sec
17-03-18 04:57:55.904 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:55.904 -07 000000447 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:57:55.914 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:55.914 -07 000000626 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:55.944 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:55.944 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:55.944 -07 000000626 INF: Y Motor: Moved to 62.3945 after 1459 ms (table move)
17-03-18 04:57:55.944 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138466 mm (DAC = 30248)
17-03-18 04:57:55.944 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:55.944 -07 000000569 INF: FPGA: Recv ZSGSRD 30847
17-03-18 04:57:55.954 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:57:55.954 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:55.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30848
17-03-18 04:57:55.964 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:55.964 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:55.964 -07 000000461 INF: FPGA: Recv ZSGSRD 30838
17-03-18 04:57:55.974 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:55.974 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:55.974 -07 000000618 INF: FPGA: Recv ZSGSRD 30835
17-03-18 04:57:55.984 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:55.984 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:55.984 -07 000000501 INF: FPGA: Recv ZSGSRD 30840
17-03-18 04:57:55.994 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:55.994 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:55.994 -07 000000569 INF: FPGA: Recv ZSGSRD 30848
17-03-18 04:57:56.004 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.004 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:56.004 -07 000000382 INF: FPGA: Recv ZSGSRD 30847
17-03-18 04:57:56.014 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.014 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:56.014 -07 000000479 INF: FPGA: Recv ZSGSRD 30843
17-03-18 04:57:56.024 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.024 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:56.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30844
17-03-18 04:57:56.034 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.034 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:56.034 -07 000000625 INF: FPGA: Recv ZSGSRD 30847
17-03-18 04:57:56.044 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.044 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:56.044 -07 000000461 INF: FPGA: Recv ZPIEZORD 26589
17-03-18 04:57:56.054 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.054 -07 000000467 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.4 V.
17-03-18 04:57:56.054 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30844 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30846 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30835 (-137.6 uncal um), Max = 30848 (-137.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:57:56.054 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30844, posNoise = 4, negNoise = 9
17-03-18 04:57:56.054 -07 000000467 INF: Z Motor: After move to -0.138466, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:56.054 -07 000000467 INF: Z Motor: Settle wait time = 1467 ms, measure time = 105 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:57:56.054 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:57:56.104 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:57:56.104 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:57:56.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:56.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:56.104 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:56.104 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:56.104 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:57:56.104 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:56.104 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:56.104 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:57:56.114 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:57:56.114 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:57:56.124 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:57:56.124 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:57:56.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:57:56.174 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:57:56.474 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:57:56.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:57:56.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:57:56.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:57:56.514 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:57:56.514 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:57:56.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 04:57:56.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:57:56.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:56.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:57:56.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:57:56.614 -07 000000461 INF: Autofocus start
17-03-18 04:57:56.614 -07 000000461 INF: MeasureProfile start
17-03-18 04:57:56.614 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:56.614 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:56.624 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:57:56.624 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:57:56.624 -07 000000461 INF: MeasureProfile done
17-03-18 04:57:56.624 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:57:56.624 -07 000000461 INF: Autofocus finished
17-03-18 04:57:56.714 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:57:56.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:57:56.814 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.99219,
17-03-18 04:57:56.824 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:57:56.824 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:57:56.824 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.13847175131161. ----------
17-03-18 04:57:56.824 -07 000000610 INF: Cycle	131	Tile	4	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:57:56.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28755, sync = True, waitForSettling = True)
17-03-18 04:57:56.834 -07 000000610 INF: Z Motor: Moving to -0.131632 mm, started at -0.138472 mm, distance = 6.84 um
17-03-18 04:57:56.854 -07 000000610 INF: FPGA: Xmit ZDACW 28755\n [Z Motor]
17-03-18 04:57:56.854 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:57:56.864 -07 000000610 INF: FPGA: 'ZDACW 28755' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:57:56.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:56.864 -07 000000625 INF: FPGA: Recv ZDACR 28755
17-03-18 04:57:56.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:56.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:57:57.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.024 -07 000000581 INF: FPGA: Recv ZSGSRD 29784
17-03-18 04:57:57.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.034 -07 000000579 INF: FPGA: Recv ZSGSRD 29779
17-03-18 04:57:57.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.044 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-18 04:57:57.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.054 -07 000000626 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:57:57.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:57:57.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.074 -07 000000569 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:57:57.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.084 -07 000000626 INF: FPGA: Recv ZSGSRD 29783
17-03-18 04:57:57.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.094 -07 000000579 INF: FPGA: Recv ZSGSRD 29784
17-03-18 04:57:57.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.104 -07 000000581 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:57:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:57.114 -07 000000608 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:57:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:57:57.124 -07 000000618 INF: FPGA: Recv ZPIEZORD 25195
17-03-18 04:57:57.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:57:57.134 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.1 V.
17-03-18 04:57:57.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29780 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29776 (-130.8 uncal um), Max = 29784 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:57:57.134 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 4, negNoise = 4
17-03-18 04:57:57.134 -07 000000610 INF: Z Motor: After move to -0.131632, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:57:57.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 04:57:57.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:57:57.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:57:57.134 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:57:57.134 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:57:57.134 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:57:57.134 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:57:57.134 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:57:57.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:57:57.134 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:57:57.134 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:57:57.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:57:57.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:57:57.134 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:57:57.144 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:57:57.144 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:57:57.144 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:57:57.144 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:57:57.144 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:57:57.154 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:57:57.154 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:57:57.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28932 150\n [Camera]
17-03-18 04:57:57.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:57:57.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:57:57.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:57:57.784 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:57.784 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:57.784 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:57:57.784 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:57:57.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:57:57.784 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:57.784 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:57.784 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:57:57.974 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 814
17-03-18 04:57:58.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:57:58.164 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:57:58.164 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:57:58.164 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:58.164 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:57:58.164 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:57:58.164 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:58.174 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:57:58.174 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:57:58.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:57:58.174 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:57:58.334 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:57:58.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:57:58.334 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:57:58.334 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:57:58.334 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:57:58.334 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:57:58.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:57:58.334 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:57:58.334 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:57:58.334 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:57:58.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:57:58.524 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:57:58.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28932 150' command took 2 ms to send, 1366 ms to get response, and 1372 ms overall
17-03-18 04:57:58.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:57:58.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131636389592776. ------
17-03-18 04:57:58.534 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:57:58.534 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13828 mm
17-03-18 04:57:58.534 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:57:58.534 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:57:58.534 -07 000000455 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 04:57:58.534 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30206, sync = True, waitForSettling = False)
17-03-18 04:57:58.534 -07 000000474 INF: Z Motor: Moving to -0.138274 mm, started at -0.131636 mm, distance = -6.64 um
17-03-18 04:57:58.534 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:57:58.544 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:57:58.544 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:58.544 -07 000000479 INF: FPGA: Recv YRDPOS 127784
17-03-18 04:57:58.554 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:57:58.554 -07 000000474 INF: FPGA: Xmit ZDACW 30206\n [Z Motor]
17-03-18 04:57:58.554 -07 000000455 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:58.554 -07 000000455 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:57:58.554 -07 000000455 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:57:58.554 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:57:58.564 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:57:58.564 -07 000000474 INF: FPGA: 'ZDACW 30206' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:57:58.574 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:57:58.584 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:57:58.584 -07 000000581 INF: FPGA: Recv ZDACR 30206
17-03-18 04:57:58.594 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:57:58.594 -07 000000474 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:57:58.724 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:57:58.724 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:57:58.734 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:58.734 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:57:58.734 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:57:58.734 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:57:58.734 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:57:58.734 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 04:57:58.734 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:57:58.744 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:57:58.764 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:57:58.764 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:57:58.944 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 04:57:58.944 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:57:58.994 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:59.004 -07 000000447 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:57:59.004 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:57:59.004 -07 000000455 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:59.004 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:57:59.004 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 04:57:59.954 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:57:59.954 -07 000000474 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:57:59.964 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:57:59.964 -07 000000455 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:57:59.994 -07 000000455 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:57:59.994 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:57:59.994 -07 000000455 INF: Y Motor: Moved to 63.2227 after 1454 ms (table move)
17-03-18 04:57:59.994 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138274 mm (DAC = 30206)
17-03-18 04:57:59.994 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:57:59.994 -07 000000479 INF: FPGA: Recv ZSGSRD 30815
17-03-18 04:58:00.004 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:00.004 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.004 -07 000000501 INF: FPGA: Recv ZSGSRD 30811
17-03-18 04:58:00.014 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.014 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.014 -07 000000502 INF: FPGA: Recv ZSGSRD 30817
17-03-18 04:58:00.024 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.024 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.024 -07 000000608 INF: FPGA: Recv ZSGSRD 30817
17-03-18 04:58:00.034 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.034 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.034 -07 000000579 INF: FPGA: Recv ZSGSRD 30814
17-03-18 04:58:00.044 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.044 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.044 -07 000000626 INF: FPGA: Recv ZSGSRD 30812
17-03-18 04:58:00.054 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.054 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.054 -07 000000608 INF: FPGA: Recv ZSGSRD 30819
17-03-18 04:58:00.064 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.064 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.064 -07 000000480 INF: FPGA: Recv ZSGSRD 30815
17-03-18 04:58:00.074 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.074 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30816
17-03-18 04:58:00.084 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.084 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:00.084 -07 000000579 INF: FPGA: Recv ZSGSRD 30814
17-03-18 04:58:00.094 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.094 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:00.094 -07 000000424 INF: FPGA: Recv ZPIEZORD 26585
17-03-18 04:58:00.104 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.104 -07 000000618 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -9.3 V.
17-03-18 04:58:00.104 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30815 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30815 (-137.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30811 (-137.5 uncal um), Max = 30819 (-137.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:58:00.104 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30815, posNoise = 4, negNoise = 4
17-03-18 04:58:00.104 -07 000000618 INF: Z Motor: After move to -0.138274, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:00.104 -07 000000618 INF: Z Motor: Settle wait time = 1457 ms, measure time = 110 ms (allowed 150 ms), total time = 1567 ms
17-03-18 04:58:00.104 -07 000000618 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:00.144 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 04:58:00.144 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:00.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:00.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:00.144 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:00.144 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:00.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:00.144 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:00.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:00.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:00.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:00.144 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:00.154 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:58:00.154 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:58:00.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:00.204 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:00.504 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:00.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:00.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:00.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 04:58:00.544 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:00.544 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:00.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:58:00.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:58:00.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:00.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:58:00.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:58:00.644 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:00.644 -07 000000625 INF: Autofocus start
17-03-18 04:58:00.644 -07 000000625 INF: MeasureProfile start
17-03-18 04:58:00.644 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:00.654 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:00.654 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:00.664 -07 000000625 INF: MeasureProfile done
17-03-18 04:58:00.664 -07 000000625 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:58:00.664 -07 000000625 INF: Autofocus finished
17-03-18 04:58:00.854 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:00.854 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:58:00.854 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.138285449159499. ----------
17-03-18 04:58:00.864 -07 000000610 INF: Cycle	131	Tile	5	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:00.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28747, sync = True, waitForSettling = True)
17-03-18 04:58:00.864 -07 000000610 INF: Z Motor: Moving to -0.131595 mm, started at -0.138285 mm, distance = 6.69 um
17-03-18 04:58:00.864 -07 000000610 INF: FPGA: Xmit ZDACW 28747\n [Z Motor]
17-03-18 04:58:00.864 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:58:00.874 -07 000000610 INF: FPGA: 'ZDACW 28747' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:00.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:00.874 -07 000000626 INF: FPGA: Recv ZDACR 28747
17-03-18 04:58:00.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:00.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:01.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.034 -07 000000512 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:58:01.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:01.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.044 -07 000000467 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:58:01.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:01.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.054 -07 000000608 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:58:01.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.064 -07 000000581 INF: FPGA: Recv ZSGSRD 29766
17-03-18 04:58:01.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:58:01.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.084 -07 000000424 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:58:01.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.094 -07 000000625 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:58:01.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.104 -07 000000626 INF: FPGA: Recv ZSGSRD 29772
17-03-18 04:58:01.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.114 -07 000000502 INF: FPGA: Recv ZSGSRD 29772
17-03-18 04:58:01.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:01.124 -07 000000626 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:58:01.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:01.134 -07 000000569 INF: FPGA: Recv ZPIEZORD 25188
17-03-18 04:58:01.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:01.144 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -10.1 V.
17-03-18 04:58:01.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29774 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29774 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29766 (-130.8 uncal um), Max = 29780 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:01.144 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29774, posNoise = 6, negNoise = 8
17-03-18 04:58:01.144 -07 000000610 INF: Z Motor: After move to -0.131595, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:01.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:58:01.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:01.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:01.144 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:01.144 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:01.144 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:01.144 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:01.144 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:01.144 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:01.144 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:01.144 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:01.144 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:58:01.144 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:01.144 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:01.144 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:01.144 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:01.144 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:01.164 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:58:01.164 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:58:01.164 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:58:01.164 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:58:01.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28924 150\n [Camera]
17-03-18 04:58:01.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:01.714 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:01.794 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:01.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:01.794 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:01.794 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:01.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 04:58:01.794 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:01.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:01.804 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:01.804 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:01.804 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:58:01.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28924 814
17-03-18 04:58:02.134 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:02.174 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.996267,
17-03-18 04:58:02.184 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:58:02.184 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:58:02.184 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:02.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:58:02.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:58:02.184 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:02.184 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:02.184 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:02.184 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:58:02.194 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:58:02.344 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:02.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:02.344 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:02.344 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:02.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:58:02.344 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:02.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:02.344 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:02.344 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:02.344 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:58:02.534 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:02.534 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:02.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28924 150' command took 2 ms to send, 1357 ms to get response, and 1369 ms overall
17-03-18 04:58:02.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:02.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131597844319926. ------
17-03-18 04:58:02.544 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:02.544 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13784 mm
17-03-18 04:58:02.544 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:02.544 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:02.544 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:58:02.544 -07 000000625 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 04:58:02.544 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30111, sync = True, waitForSettling = False)
17-03-18 04:58:02.544 -07 000000512 INF: Z Motor: Moving to -0.137839 mm, started at -0.131598 mm, distance = -6.24 um
17-03-18 04:58:02.554 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:02.554 -07 000000512 INF: FPGA: Xmit ZDACW 30111\n [Z Motor]
17-03-18 04:58:02.554 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:58:02.564 -07 000000512 INF: FPGA: 'ZDACW 30111' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:58:02.564 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:02.564 -07 000000606 INF: FPGA: Recv YRDPOS 129480
17-03-18 04:58:02.574 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:02.574 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:58:02.574 -07 000000625 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:02.574 -07 000000625 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:02.574 -07 000000625 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:58:02.584 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:02.584 -07 000000502 INF: FPGA: Recv ZDACR 30111
17-03-18 04:58:02.594 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:02.594 -07 000000512 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:58:02.594 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:02.754 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:58:02.754 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:58:02.754 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:02.754 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:58:02.754 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:58:02.754 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:02.754 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:02.754 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:02.754 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:58:02.764 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:58:02.774 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:02.774 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:58:02.964 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:58:02.964 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:58:03.014 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:03.024 -07 000000424 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:58:03.024 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:58:03.024 -07 000000625 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:03.024 -07 000000625 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 04:58:03.024 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 04:58:03.974 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:03.974 -07 000000455 INF: FPGA: Recv YRDPOS 131186
17-03-18 04:58:03.984 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:03.984 -07 000000625 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:04.004 -07 000000625 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:04.004 -07 000000625 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:04.014 -07 000000625 INF: Y Motor: Moved to 64.0557 after 1463 ms (table move)
17-03-18 04:58:04.014 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137839 mm (DAC = 30111)
17-03-18 04:58:04.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.014 -07 000000608 INF: FPGA: Recv ZSGSRD 30748
17-03-18 04:58:04.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:04.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.024 -07 000000455 INF: FPGA: Recv ZSGSRD 30753
17-03-18 04:58:04.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.034 -07 000000606 INF: FPGA: Recv ZSGSRD 30754
17-03-18 04:58:04.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.044 -07 000000608 INF: FPGA: Recv ZSGSRD 30743
17-03-18 04:58:04.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.054 -07 000000474 INF: FPGA: Recv ZSGSRD 30743
17-03-18 04:58:04.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.064 -07 000000626 INF: FPGA: Recv ZSGSRD 30745
17-03-18 04:58:04.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.074 -07 000000455 INF: FPGA: Recv ZSGSRD 30750
17-03-18 04:58:04.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.084 -07 000000447 INF: FPGA: Recv ZSGSRD 30750
17-03-18 04:58:04.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.094 -07 000000608 INF: FPGA: Recv ZSGSRD 30749
17-03-18 04:58:04.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:04.104 -07 000000581 INF: FPGA: Recv ZSGSRD 30746
17-03-18 04:58:04.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.114 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:04.114 -07 000000618 INF: FPGA: Recv ZPIEZORD 26489
17-03-18 04:58:04.124 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.124 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.595 V. Piezo Error = -9.4 V.
17-03-18 04:58:04.124 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30748 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30748 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30743 (-137.0 uncal um), Max = 30754 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:04.124 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30748, posNoise = 6, negNoise = 5
17-03-18 04:58:04.124 -07 000000569 INF: Z Motor: After move to -0.137839, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:04.124 -07 000000569 INF: Z Motor: Settle wait time = 1466 ms, measure time = 107 ms (allowed 150 ms), total time = 1573 ms
17-03-18 04:58:04.124 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:04.174 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 04:58:04.174 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:04.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:04.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:04.174 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:04.174 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:04.174 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:04.174 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:04.174 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:58:04.174 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:04.184 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:04.184 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:04.194 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:58:04.194 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:58:04.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:04.234 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:04.534 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:04.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:04.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:04.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 04:58:04.574 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:04.574 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:04.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:58:04.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 04:58:04.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:04.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:58:04.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 04:58:04.674 -07 000000501 INF: Autofocus start
17-03-18 04:58:04.674 -07 000000501 INF: MeasureProfile start
17-03-18 04:58:04.674 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:04.674 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:04.684 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:04.684 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:04.684 -07 000000501 INF: MeasureProfile done
17-03-18 04:58:04.684 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:58:04.684 -07 000000501 INF: Autofocus finished
17-03-18 04:58:04.884 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:04.884 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:04.884 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.137855026946001. ----------
17-03-18 04:58:04.884 -07 000000610 INF: Cycle	131	Tile	6	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:04.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28652, sync = True, waitForSettling = True)
17-03-18 04:58:04.894 -07 000000610 INF: Z Motor: Moving to -0.131160 mm, started at -0.137855 mm, distance = 6.69 um
17-03-18 04:58:04.894 -07 000000610 INF: FPGA: Xmit ZDACW 28652\n [Z Motor]
17-03-18 04:58:04.894 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 04:58:04.904 -07 000000610 INF: FPGA: 'ZDACW 28652' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:04.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:04.904 -07 000000502 INF: FPGA: Recv ZDACR 28652
17-03-18 04:58:04.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:04.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:05.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.064 -07 000000479 INF: FPGA: Recv ZSGSRD 29705
17-03-18 04:58:05.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:05.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.074 -07 000000569 INF: FPGA: Recv ZSGSRD 29706
17-03-18 04:58:05.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.084 -07 000000618 INF: FPGA: Recv ZSGSRD 29709
17-03-18 04:58:05.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29710
17-03-18 04:58:05.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.104 -07 000000502 INF: FPGA: Recv ZSGSRD 29709
17-03-18 04:58:05.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.114 -07 000000581 INF: FPGA: Recv ZSGSRD 29706
17-03-18 04:58:05.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29702
17-03-18 04:58:05.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.134 -07 000000579 INF: FPGA: Recv ZSGSRD 29709
17-03-18 04:58:05.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29706
17-03-18 04:58:05.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:05.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29710
17-03-18 04:58:05.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:05.164 -07 000000479 INF: FPGA: Recv ZPIEZORD 25151
17-03-18 04:58:05.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:05.174 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -10.0 V.
17-03-18 04:58:05.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29707 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29708 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29702 (-130.4 uncal um), Max = 29710 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:05.174 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29707, posNoise = 3, negNoise = 5
17-03-18 04:58:05.174 -07 000000610 INF: Z Motor: After move to -0.131160, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:05.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:58:05.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:05.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:05.174 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:05.174 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:05.174 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:05.174 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:05.174 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:58:05.174 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:05.174 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:05.174 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:05.174 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:05.174 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:05.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:05.184 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:05.184 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:05.184 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:05.184 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:58:05.184 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:05.194 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:58:05.194 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:58:05.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28829 150\n [Camera]
17-03-18 04:58:05.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:05.824 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:05.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:05.824 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:05.824 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:05.824 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:58:05.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:05.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:05.824 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:05.824 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:05.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:58:06.014 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28829 814
17-03-18 04:58:06.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 965
17-03-18 04:58:06.204 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:58:06.204 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:58:06.204 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:06.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:58:06.204 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:58:06.204 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:06.214 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:58:06.214 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:58:06.214 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:58:06.214 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:58:06.374 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:06.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:06.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:06.374 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:06.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:58:06.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:06.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:06.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:06.374 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:06.374 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 04:58:06.564 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 04:58:06.564 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:06.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28829 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-18 04:58:06.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:06.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.131167422106428. ------
17-03-18 04:58:06.574 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:06.574 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13771 mm
17-03-18 04:58:06.574 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:06.574 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:58:06.574 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30082, sync = True, waitForSettling = False)
17-03-18 04:58:06.574 -07 000000625 INF: Z Motor: Moving to -0.137707 mm, started at -0.131167 mm, distance = -6.54 um
17-03-18 04:58:06.574 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:06.574 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 04:58:06.724 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 154 ms overall
17-03-18 04:58:06.724 -07 000000625 INF: FPGA: Xmit ZDACW 30082\n [Z Motor]
17-03-18 04:58:06.724 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:06.724 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:58:06.734 -07 000000625 INF: FPGA: 'ZDACW 30082' command took 0 ms to send, 0 ms to get response, and 156 ms overall
17-03-18 04:58:06.734 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:06.734 -07 000000455 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:58:06.744 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 165 ms overall
17-03-18 04:58:06.744 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:06.744 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:06.744 -07 000000618 INF: FPGA: Recv ZDACR 30082
17-03-18 04:58:06.744 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:06.744 -07 000000501 INF: Y Motor: Moving 1338 steps-14
17-03-18 04:58:06.754 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:06.754 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:06.754 -07 000000625 INF: Z Motor: MoveAbsStepped took 176 ms (did NOT wait for settling yet))
17-03-18 04:58:06.764 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:06.784 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 412 ms.
17-03-18 04:58:06.784 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:58:06.784 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:06.784 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 410 ms.
17-03-18 04:58:06.784 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:58:06.784 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:06.794 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:06.794 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:06.794 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-18 04:58:06.794 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 04:58:06.954 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:06.954 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 229 ms overall
17-03-18 04:58:07.134 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:58:07.134 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-18 04:58:07.184 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:07.194 -07 000000479 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:58:07.194 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:58:07.194 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:07.194 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:58:07.194 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-18 04:58:07.554 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.985358,
17-03-18 04:58:08.144 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:08.144 -07 000000424 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:58:08.154 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.154 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:08.194 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:08.194 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:08.194 -07 000000501 INF: Y Motor: Moved to 64.8774 after 1620 ms (table move)
17-03-18 04:58:08.194 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137707 mm (DAC = 30082)
17-03-18 04:58:08.194 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.204 -07 000000579 INF: FPGA: Recv ZSGSRD 30726
17-03-18 04:58:08.204 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:58:08.204 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.204 -07 000000480 INF: FPGA: Recv ZSGSRD 30729
17-03-18 04:58:08.214 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.214 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.214 -07 000000579 INF: FPGA: Recv ZSGSRD 30718
17-03-18 04:58:08.224 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.224 -07 000000625 INF: FPGA: Recv ZSGSRD 30728
17-03-18 04:58:08.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.234 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.234 -07 000000382 INF: FPGA: Recv ZSGSRD 30729
17-03-18 04:58:08.244 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.244 -07 000000455 INF: FPGA: Recv ZSGSRD 30724
17-03-18 04:58:08.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30724
17-03-18 04:58:08.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.264 -07 000000512 INF: FPGA: Recv ZSGSRD 30721
17-03-18 04:58:08.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.274 -07 000000606 INF: FPGA: Recv ZSGSRD 30734
17-03-18 04:58:08.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:08.284 -07 000000608 INF: FPGA: Recv ZSGSRD 30726
17-03-18 04:58:08.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.294 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:08.294 -07 000000455 INF: FPGA: Recv ZPIEZORD 26512
17-03-18 04:58:08.304 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:08.304 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.3 V.
17-03-18 04:58:08.304 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30726 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30718 (-136.9 uncal um), Max = 30734 (-137.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:08.304 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30726, posNoise = 8, negNoise = 8
17-03-18 04:58:08.304 -07 000000569 INF: Z Motor: After move to -0.137707, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:08.304 -07 000000569 INF: Z Motor: Settle wait time = 1623 ms, measure time = 103 ms (allowed 150 ms), total time = 1726 ms
17-03-18 04:58:08.304 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:08.354 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1779 ms
17-03-18 04:58:08.354 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:08.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:08.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:08.354 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:08.354 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:08.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:08.354 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:08.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:08.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:08.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:08.364 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:08.364 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:58:08.364 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:58:08.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:08.414 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:08.714 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:08.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:08.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:08.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:08.754 -07 000000579 INF: FPGA: Recv @CAMSNAP 382
17-03-18 04:58:08.754 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:08.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 04:58:08.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:58:08.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:08.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:58:08.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 04:58:08.954 -07 000000626 INF: Autofocus start
17-03-18 04:58:08.954 -07 000000626 INF: MeasureProfile start
17-03-18 04:58:08.954 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:08.954 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:08.964 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:08.964 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:08.964 -07 000000626 INF: MeasureProfile done
17-03-18 04:58:08.964 -07 000000626 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 04:58:08.964 -07 000000626 INF: Autofocus finished
17-03-18 04:58:09.164 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:09.164 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 04:58:09.174 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137713694278882. ----------
17-03-18 04:58:09.174 -07 000000610 INF: Cycle	131	Tile	7	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:09.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28526, sync = True, waitForSettling = True)
17-03-18 04:58:09.174 -07 000000610 INF: Z Motor: Moving to -0.130584 mm, started at -0.137714 mm, distance = 7.13 um
17-03-18 04:58:09.174 -07 000000610 INF: FPGA: Xmit ZDACW 28526\n [Z Motor]
17-03-18 04:58:09.174 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:58:09.184 -07 000000610 INF: FPGA: 'ZDACW 28526' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:09.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:09.184 -07 000000474 INF: FPGA: Recv ZDACR 28526
17-03-18 04:58:09.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:09.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.344 -07 000000455 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:58:09.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.354 -07 000000581 INF: FPGA: Recv ZSGSRD 29619
17-03-18 04:58:09.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:58:09.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:58:09.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.384 -07 000000479 INF: FPGA: Recv ZSGSRD 29617
17-03-18 04:58:09.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.394 -07 000000424 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:58:09.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.404 -07 000000626 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:58:09.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.414 -07 000000606 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:58:09.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.424 -07 000000480 INF: FPGA: Recv ZSGSRD 29614
17-03-18 04:58:09.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:09.434 -07 000000474 INF: FPGA: Recv ZSGSRD 29619
17-03-18 04:58:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:09.444 -07 000000455 INF: FPGA: Recv ZPIEZORD 25078
17-03-18 04:58:09.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:09.454 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -10.0 V.
17-03-18 04:58:09.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29617 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29618 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29614 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:58:09.454 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29617, posNoise = 2, negNoise = 3
17-03-18 04:58:09.454 -07 000000610 INF: Z Motor: After move to -0.130584, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:09.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:58:09.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:09.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:09.454 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:09.454 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:09.454 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:09.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:09.454 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:09.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:09.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:09.454 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:09.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:09.454 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:09.464 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:58:09.464 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:09.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:09.464 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:09.464 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:58:09.464 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:58:09.474 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:58:09.474 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:09.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28702 150\n [Camera]
17-03-18 04:58:09.674 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:10.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:10.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:10.104 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:10.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:10.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:10.104 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:10.114 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:10.114 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:58:10.114 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:10.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:58:10.294 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28702 814
17-03-18 04:58:10.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:10.504 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:58:10.504 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:58:10.504 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:10.504 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:58:10.514 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:58:10.514 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:10.514 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:10.514 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:58:10.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:10.524 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:58:10.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:10.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:10.654 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:10.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:10.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:10.654 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:10.774 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:10.774 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:58:10.784 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:10.784 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:58:10.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:10.844 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:10.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28702 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:58:10.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:10.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130589243013669. ------
17-03-18 04:58:10.844 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:10.844 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13721 mm
17-03-18 04:58:10.844 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:10.854 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29974, sync = True, waitForSettling = False)
17-03-18 04:58:10.854 -07 000000581 INF: Z Motor: Moving to -0.137212 mm, started at -0.130589 mm, distance = -6.62 um
17-03-18 04:58:10.854 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:58:10.854 -07 000000474 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 04:58:10.854 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:10.854 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 04:58:10.854 -07 000000581 INF: FPGA: Xmit ZDACW 29974\n [Z Motor]
17-03-18 04:58:10.854 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:58:10.864 -07 000000581 INF: FPGA: 'ZDACW 29974' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:10.864 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:10.864 -07 000000512 INF: FPGA: Recv ZDACR 29974
17-03-18 04:58:10.874 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:10.874 -07 000000581 INF: FPGA: 'ZDACR' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:10.874 -07 000000581 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 04:58:10.874 -07 000000479 INF: FPGA: Recv YRDPOS 132869
17-03-18 04:58:10.884 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:10.884 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:10.884 -07 000000474 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:10.884 -07 000000474 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:10.884 -07 000000474 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:58:10.894 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:11.084 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:11.084 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 231 ms overall
17-03-18 04:58:11.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:58:11.174 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:58:11.174 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:11.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:58:11.184 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:58:11.184 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:11.184 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:11.184 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:11.184 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 04:58:11.194 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 04:58:11.264 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:58:11.264 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:58:11.314 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:11.324 -07 000000479 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:58:11.324 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:58:11.324 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:11.324 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:58:11.324 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec
17-03-18 04:58:11.724 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:12.284 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:12.284 -07 000000467 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:58:12.294 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:58:12.294 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:12.334 -07 000000474 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:12.334 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:12.334 -07 000000474 INF: Y Motor: Moved to 65.7129 after 1484 ms (table move)
17-03-18 04:58:12.334 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137212 mm (DAC = 29974)
17-03-18 04:58:12.334 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.344 -07 000000382 INF: FPGA: Recv ZSGSRD 30656
17-03-18 04:58:12.344 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:58:12.344 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.344 -07 000000581 INF: FPGA: Recv ZSGSRD 30647
17-03-18 04:58:12.354 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:12.354 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.354 -07 000000625 INF: FPGA: Recv ZSGSRD 30648
17-03-18 04:58:12.364 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.364 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.364 -07 000000480 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:58:12.374 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.374 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.374 -07 000000626 INF: FPGA: Recv ZSGSRD 30647
17-03-18 04:58:12.384 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.384 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.384 -07 000000480 INF: FPGA: Recv ZSGSRD 30653
17-03-18 04:58:12.394 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.394 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.394 -07 000000474 INF: FPGA: Recv ZSGSRD 30651
17-03-18 04:58:12.404 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.404 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.404 -07 000000512 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:58:12.414 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.414 -07 000000581 INF: FPGA: Recv ZSGSRD 30644
17-03-18 04:58:12.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:12.424 -07 000000447 INF: FPGA: Recv ZSGSRD 30646
17-03-18 04:58:12.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.434 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:12.434 -07 000000502 INF: FPGA: Recv ZPIEZORD 26436
17-03-18 04:58:12.444 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:12.444 -07 000000606 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.3 V.
17-03-18 04:58:12.444 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30649 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30649 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30644 (-136.4 uncal um), Max = 30656 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:12.444 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30649, posNoise = 7, negNoise = 5
17-03-18 04:58:12.444 -07 000000606 INF: Z Motor: After move to -0.137212, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:12.444 -07 000000606 INF: Z Motor: Settle wait time = 1487 ms, measure time = 103 ms (allowed 150 ms), total time = 1590 ms
17-03-18 04:58:12.444 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:12.494 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1642 ms
17-03-18 04:58:12.494 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:12.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:12.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:12.494 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:12.494 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:12.494 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:12.494 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:12.494 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:12.494 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:12.504 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:12.504 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:12.504 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:58:12.504 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:58:12.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:12.554 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:12.854 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:12.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:12.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:12.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:12.894 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:12.894 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:12.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:58:12.914 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.960826,
17-03-18 04:58:12.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:58:12.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:12.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:12.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:58:12.994 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:12.994 -07 000000447 INF: Autofocus start
17-03-18 04:58:12.994 -07 000000447 INF: MeasureProfile start
17-03-18 04:58:13.004 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:13.004 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:13.004 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:13.014 -07 000000447 INF: MeasureProfile done
17-03-18 04:58:13.014 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:58:13.014 -07 000000447 INF: Autofocus finished
17-03-18 04:58:13.204 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:13.204 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:13.204 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137219029943967. ----------
17-03-18 04:58:13.204 -07 000000610 INF: Cycle	131	Tile	8	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:13.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28499, sync = True, waitForSettling = True)
17-03-18 04:58:13.214 -07 000000610 INF: Z Motor: Moving to -0.130460 mm, started at -0.137219 mm, distance = 6.76 um
17-03-18 04:58:13.214 -07 000000610 INF: FPGA: Xmit ZDACW 28499\n [Z Motor]
17-03-18 04:58:13.214 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 04:58:13.224 -07 000000610 INF: FPGA: 'ZDACW 28499' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:13.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:13.224 -07 000000424 INF: FPGA: Recv ZDACR 28499
17-03-18 04:58:13.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:13.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.384 -07 000000501 INF: FPGA: Recv ZSGSRD 29598
17-03-18 04:58:13.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.394 -07 000000455 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:58:13.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.404 -07 000000424 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:58:13.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.414 -07 000000606 INF: FPGA: Recv ZSGSRD 29598
17-03-18 04:58:13.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29591
17-03-18 04:58:13.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29601
17-03-18 04:58:13.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.444 -07 000000447 INF: FPGA: Recv ZSGSRD 29599
17-03-18 04:58:13.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.454 -07 000000581 INF: FPGA: Recv ZSGSRD 29600
17-03-18 04:58:13.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.464 -07 000000569 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:58:13.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:13.474 -07 000000579 INF: FPGA: Recv ZSGSRD 29599
17-03-18 04:58:13.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:13.484 -07 000000502 INF: FPGA: Recv ZPIEZORD 25074
17-03-18 04:58:13.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:13.494 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.9 V.
17-03-18 04:58:13.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29597 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29598 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29591 (-129.6 uncal um), Max = 29601 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:58:13.494 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29597, posNoise = 4, negNoise = 6
17-03-18 04:58:13.494 -07 000000610 INF: Z Motor: After move to -0.130460, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:13.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:58:13.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:13.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:13.494 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:13.494 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:13.494 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:13.494 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:13.494 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:13.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:13.494 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:58:13.494 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:13.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:58:13.494 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:13.504 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:58:13.504 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:13.504 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:13.504 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:13.504 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:58:13.514 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:13.514 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:58:13.514 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:13.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28675 150\n [Camera]
17-03-18 04:58:13.714 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:14.144 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:14.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:14.144 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:14.144 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:14.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:14.144 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:14.144 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:14.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:58:14.144 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:14.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2424733856, 0x0, 391868352) start.
17-03-18 04:58:14.334 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28675 814
17-03-18 04:58:14.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:14.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2424733856, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:58:14.544 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:58:14.544 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:14.544 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:14.544 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:58:14.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:58:14.544 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:58:14.544 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:14.544 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:14.554 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:58:14.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:14.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:14.694 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:14.694 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:14.694 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) start.
17-03-18 04:58:14.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:14.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:14.694 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:14.694 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:14.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) start.
17-03-18 04:58:14.884 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:14.884 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:14.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28675 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-18 04:58:14.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:14.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130460758770834. ------
17-03-18 04:58:14.884 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:14.884 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13688 mm
17-03-18 04:58:14.884 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:14.894 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:58:14.894 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 04:58:14.894 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:14.894 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29901, sync = True, waitForSettling = False)
17-03-18 04:58:14.894 -07 000000474 INF: Z Motor: Moving to -0.136878 mm, started at -0.130461 mm, distance = -6.42 um
17-03-18 04:58:14.894 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:14.894 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:14.894 -07 000000447 INF: FPGA: Recv YRDPOS 134580
17-03-18 04:58:14.904 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:14.904 -07 000000480 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:14.904 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:14.904 -07 000000480 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:58:14.904 -07 000000474 INF: FPGA: Xmit ZDACW 29901\n [Z Motor]
17-03-18 04:58:14.904 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:58:14.914 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:14.914 -07 000000474 INF: FPGA: 'ZDACW 29901' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:14.924 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:14.934 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:14.934 -07 000000455 INF: FPGA: Recv ZDACR 29901
17-03-18 04:58:14.944 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:14.944 -07 000000474 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:58:15.094 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:58:15.094 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:58:15.094 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:15.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:58:15.094 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:58:15.094 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:15.104 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:15.104 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:58:15.104 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:15.104 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:58:15.114 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:15.114 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:58:15.294 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:58:15.294 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:58:15.344 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:15.354 -07 000000618 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:58:15.354 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:58:15.354 -07 000000480 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:15.354 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:58:15.354 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 04:58:16.304 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:16.304 -07 000000461 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:58:16.314 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:16.314 -07 000000480 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:16.344 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:16.344 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:16.344 -07 000000480 INF: Y Motor: Moved to 66.5381 after 1453 ms (table move)
17-03-18 04:58:16.344 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136878 mm (DAC = 29901)
17-03-18 04:58:16.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.354 -07 000000581 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:58:16.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:58:16.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.354 -07 000000625 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:58:16.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.364 -07 000000467 INF: FPGA: Recv ZSGSRD 30599
17-03-18 04:58:16.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.374 -07 000000479 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:58:16.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.384 -07 000000455 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:58:16.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.394 -07 000000461 INF: FPGA: Recv ZSGSRD 30599
17-03-18 04:58:16.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.404 -07 000000447 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:58:16.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:16.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.414 -07 000000618 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:58:16.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.424 -07 000000424 INF: FPGA: Recv ZSGSRD 30595
17-03-18 04:58:16.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:16.434 -07 000000512 INF: FPGA: Recv ZSGSRD 30602
17-03-18 04:58:16.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.444 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:16.444 -07 000000501 INF: FPGA: Recv ZPIEZORD 26364
17-03-18 04:58:16.454 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:16.454 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.3 V.
17-03-18 04:58:16.454 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30596 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30596 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30593 (-136.1 uncal um), Max = 30602 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:58:16.454 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30596, posNoise = 6, negNoise = 3
17-03-18 04:58:16.454 -07 000000382 INF: Z Motor: After move to -0.136878, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:16.454 -07 000000382 INF: Z Motor: Settle wait time = 1457 ms, measure time = 103 ms (allowed 150 ms), total time = 1560 ms
17-03-18 04:58:16.454 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:16.504 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:58:16.504 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:16.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:16.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:16.504 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:16.504 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:16.504 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:16.504 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:16.504 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:16.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:16.514 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:16.514 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:16.524 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:58:16.524 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:58:16.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:16.574 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:16.724 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:16.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:16.874 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:16.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:16.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:16.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:58:16.914 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:16.914 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:16.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:58:17.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 04:58:17.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:17.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:17.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:58:17.014 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:17.014 -07 000000474 INF: Autofocus start
17-03-18 04:58:17.014 -07 000000474 INF: MeasureProfile start
17-03-18 04:58:17.014 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:17.024 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:17.024 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:17.024 -07 000000474 INF: MeasureProfile done
17-03-18 04:58:17.024 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:58:17.024 -07 000000474 INF: Autofocus finished
17-03-18 04:58:17.224 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:17.224 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:17.224 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.136878546700453. ----------
17-03-18 04:58:17.224 -07 000000610 INF: Cycle	131	Tile	9	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:17.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28395, sync = True, waitForSettling = True)
17-03-18 04:58:17.234 -07 000000610 INF: Z Motor: Moving to -0.129984 mm, started at -0.136879 mm, distance = 6.89 um
17-03-18 04:58:17.234 -07 000000610 INF: FPGA: Xmit ZDACW 28395\n [Z Motor]
17-03-18 04:58:17.234 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:58:17.244 -07 000000610 INF: FPGA: 'ZDACW 28395' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:17.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:17.244 -07 000000424 INF: FPGA: Recv ZDACR 28395
17-03-18 04:58:17.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:17.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.404 -07 000000618 INF: FPGA: Recv ZSGSRD 29521
17-03-18 04:58:17.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:58:17.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.424 -07 000000579 INF: FPGA: Recv ZSGSRD 29514
17-03-18 04:58:17.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.434 -07 000000606 INF: FPGA: Recv ZSGSRD 29516
17-03-18 04:58:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.444 -07 000000626 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:58:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.454 -07 000000479 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:58:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.464 -07 000000461 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:58:17.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.474 -07 000000480 INF: FPGA: Recv ZSGSRD 29522
17-03-18 04:58:17.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.484 -07 000000608 INF: FPGA: Recv ZSGSRD 29526
17-03-18 04:58:17.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:17.494 -07 000000424 INF: FPGA: Recv ZSGSRD 29525
17-03-18 04:58:17.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:17.504 -07 000000447 INF: FPGA: Recv ZPIEZORD 24945
17-03-18 04:58:17.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:17.514 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.0 V.
17-03-18 04:58:17.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29522 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29522 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29514 (-129.1 uncal um), Max = 29531 (-129.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:17.514 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29522, posNoise = 9, negNoise = 8
17-03-18 04:58:17.514 -07 000000610 INF: Z Motor: After move to -0.129984, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:17.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:58:17.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:17.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:17.514 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:17.514 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:17.514 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:17.514 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:17.514 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:17.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:17.514 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:17.514 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:17.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:17.514 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:17.524 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:17.524 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:17.524 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:58:17.524 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:17.534 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:58:17.534 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:58:17.534 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:58:17.534 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:58:17.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28572 150\n [Camera]
17-03-18 04:58:17.744 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:18.174 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:18.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:18.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:18.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:18.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:58:18.174 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:18.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:18.174 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:18.174 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:18.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 04:58:18.294 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.989471,
17-03-18 04:58:18.364 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28572 814
17-03-18 04:58:18.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:18.554 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:58:18.554 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 04:58:18.554 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:18.554 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:58:18.554 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:58:18.554 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:18.554 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:18.554 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:58:18.564 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:18.564 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:58:18.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:18.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:18.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:18.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:18.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:18.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:18.854 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:18.854 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:58:18.854 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:18.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:58:18.914 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:58:18.914 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:18.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28572 150' command took 2 ms to send, 1361 ms to get response, and 1370 ms overall
17-03-18 04:58:18.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:18.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.129978942860202. ------
17-03-18 04:58:18.914 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:18.914 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13677 mm
17-03-18 04:58:18.914 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:18.914 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:58:18.914 -07 000000625 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:58:18.914 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:18.924 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:18.924 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:18.924 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29878, sync = True, waitForSettling = False)
17-03-18 04:58:18.924 -07 000000502 INF: Z Motor: Moving to -0.136773 mm, started at -0.129979 mm, distance = -6.79 um
17-03-18 04:58:18.924 -07 000000461 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:58:18.934 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:18.934 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:18.934 -07 000000625 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:18.934 -07 000000625 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:18.934 -07 000000625 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:58:18.944 -07 000000502 INF: FPGA: Xmit ZDACW 29878\n [Z Motor]
17-03-18 04:58:18.944 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:58:18.954 -07 000000502 INF: FPGA: 'ZDACW 29878' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:58:18.954 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:18.964 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:18.964 -07 000000569 INF: FPGA: Recv ZDACR 29878
17-03-18 04:58:18.974 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:18.974 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:58:19.134 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:19.134 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:58:19.234 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:58:19.234 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:58:19.234 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:19.244 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:19.244 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:58:19.244 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:58:19.244 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:19.244 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:19.244 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 04:58:19.244 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:58:19.324 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:58:19.324 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:58:19.374 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:19.384 -07 000000581 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:58:19.384 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:58:19.384 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:19.384 -07 000000625 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:58:19.384 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 04:58:20.334 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:20.334 -07 000000626 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:58:20.344 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.344 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:20.374 -07 000000625 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:20.374 -07 000000625 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:20.374 -07 000000625 INF: Y Motor: Moved to 67.3711 after 1451 ms (table move)
17-03-18 04:58:20.374 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136773 mm (DAC = 29878)
17-03-18 04:58:20.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.374 -07 000000480 INF: FPGA: Recv ZSGSRD 30584
17-03-18 04:58:20.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:20.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.384 -07 000000447 INF: FPGA: Recv ZSGSRD 30581
17-03-18 04:58:20.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.394 -07 000000625 INF: FPGA: Recv ZSGSRD 30583
17-03-18 04:58:20.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30572
17-03-18 04:58:20.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.414 -07 000000626 INF: FPGA: Recv ZSGSRD 30575
17-03-18 04:58:20.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.424 -07 000000618 INF: FPGA: Recv ZSGSRD 30583
17-03-18 04:58:20.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.434 -07 000000447 INF: FPGA: Recv ZSGSRD 30578
17-03-18 04:58:20.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.444 -07 000000625 INF: FPGA: Recv ZSGSRD 30585
17-03-18 04:58:20.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.454 -07 000000480 INF: FPGA: Recv ZSGSRD 30578
17-03-18 04:58:20.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:20.464 -07 000000382 INF: FPGA: Recv ZSGSRD 30581
17-03-18 04:58:20.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.474 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:20.474 -07 000000608 INF: FPGA: Recv ZPIEZORD 26357
17-03-18 04:58:20.484 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:20.484 -07 000000455 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.3 V.
17-03-18 04:58:20.484 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30580 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30581 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30572 (-135.9 uncal um), Max = 30585 (-136.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:20.484 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30580, posNoise = 5, negNoise = 8
17-03-18 04:58:20.484 -07 000000455 INF: Z Motor: After move to -0.136773, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:20.484 -07 000000455 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:58:20.484 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:20.534 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:58:20.534 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:20.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:20.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:20.534 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:20.534 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:20.534 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:20.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:20.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:20.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:20.544 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:20.544 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:20.554 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:58:20.554 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:58:20.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:20.604 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:20.904 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:20.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:20.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:20.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-18 04:58:20.934 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:20.944 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:20.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 04:58:21.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 04:58:21.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:21.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:58:21.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 04:58:21.044 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:21.044 -07 000000608 INF: Autofocus start
17-03-18 04:58:21.044 -07 000000608 INF: MeasureProfile start
17-03-18 04:58:21.044 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:21.054 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:21.054 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:21.064 -07 000000608 INF: MeasureProfile done
17-03-18 04:58:21.064 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:58:21.064 -07 000000608 INF: Autofocus finished
17-03-18 04:58:21.254 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:21.254 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:21.254 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.136775759306185. ----------
17-03-18 04:58:21.264 -07 000000610 INF: Cycle	131	Tile	10	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:21.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28386, sync = True, waitForSettling = True)
17-03-18 04:58:21.264 -07 000000610 INF: Z Motor: Moving to -0.129943 mm, started at -0.136776 mm, distance = 6.83 um
17-03-18 04:58:21.264 -07 000000610 INF: FPGA: Xmit ZDACW 28386\n [Z Motor]
17-03-18 04:58:21.264 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 04:58:21.274 -07 000000610 INF: FPGA: 'ZDACW 28386' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:21.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:21.274 -07 000000626 INF: FPGA: Recv ZDACR 28386
17-03-18 04:58:21.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:21.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.434 -07 000000467 INF: FPGA: Recv ZSGSRD 29518
17-03-18 04:58:21.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.444 -07 000000479 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:58:21.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.454 -07 000000474 INF: FPGA: Recv ZSGSRD 29519
17-03-18 04:58:21.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.464 -07 000000501 INF: FPGA: Recv ZSGSRD 29512
17-03-18 04:58:21.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.474 -07 000000579 INF: FPGA: Recv ZSGSRD 29517
17-03-18 04:58:21.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.484 -07 000000447 INF: FPGA: Recv ZSGSRD 29520
17-03-18 04:58:21.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.494 -07 000000625 INF: FPGA: Recv ZSGSRD 29513
17-03-18 04:58:21.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.504 -07 000000474 INF: FPGA: Recv ZSGSRD 29518
17-03-18 04:58:21.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.514 -07 000000461 INF: FPGA: Recv ZSGSRD 29510
17-03-18 04:58:21.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:21.524 -07 000000579 INF: FPGA: Recv ZSGSRD 29517
17-03-18 04:58:21.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:21.534 -07 000000618 INF: FPGA: Recv ZPIEZORD 24985
17-03-18 04:58:21.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:21.544 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.9 V.
17-03-18 04:58:21.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29517 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29518 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29510 (-129.1 uncal um), Max = 29524 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:58:21.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29517, posNoise = 7, negNoise = 7
17-03-18 04:58:21.544 -07 000000610 INF: Z Motor: After move to -0.129943, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:21.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:58:21.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:21.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:21.544 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:21.544 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:21.544 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:21.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:21.544 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:21.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:21.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:21.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:21.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:21.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:21.554 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:21.554 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:21.554 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:21.554 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:21.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:58:21.564 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:58:21.564 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:58:21.564 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:21.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28563 150\n [Camera]
17-03-18 04:58:21.724 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:21.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:21.764 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:22.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:22.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:22.194 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:22.194 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:22.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:58:22.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:22.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:22.194 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:22.194 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:22.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:58:22.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28563 814
17-03-18 04:58:22.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:22.574 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:58:22.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:58:22.574 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:58:22.574 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:22.574 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:58:22.574 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:22.584 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:22.584 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:22.584 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:58:22.594 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:58:22.744 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:22.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:22.744 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:22.874 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:22.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:22.874 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:22.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) start.
17-03-18 04:58:22.874 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:22.884 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:22.884 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:58:22.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:22.934 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:22.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28563 150' command took 2 ms to send, 1364 ms to get response, and 1369 ms overall
17-03-18 04:58:22.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:22.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.129946821799493. ------
17-03-18 04:58:22.934 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:22.934 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13631 mm
17-03-18 04:58:22.944 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:22.944 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:22.944 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:58:22.944 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:22.944 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29777, sync = True, waitForSettling = False)
17-03-18 04:58:22.944 -07 000000480 INF: Z Motor: Moving to -0.136310 mm, started at -0.129947 mm, distance = -6.36 um
17-03-18 04:58:22.944 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:58:22.944 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:58:22.954 -07 000000480 INF: FPGA: Xmit ZDACW 29777\n [Z Motor]
17-03-18 04:58:22.954 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:58:22.964 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:22.964 -07 000000480 INF: FPGA: 'ZDACW 29777' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:58:22.964 -07 000000625 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:58:22.974 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:58:22.974 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:22.974 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:22.974 -07 000000626 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:58:22.974 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:22.974 -07 000000455 INF: FPGA: Recv ZDACR 29777
17-03-18 04:58:22.984 -07 000000480 INF: FPGA: 'ZDACR' command took 4 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:22.984 -07 000000480 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:58:22.984 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:23.144 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:23.144 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:58:23.274 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:58:23.274 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:58:23.274 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:23.274 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:23.274 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-18 04:58:23.284 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:58:23.284 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:58:23.284 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:23.284 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:23.294 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:58:23.354 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 04:58:23.354 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-18 04:58:23.414 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:23.414 -07 000000455 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:58:23.424 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:23.424 -07 000000626 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:23.424 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:58:23.424 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.842 mm, average velocity = 2.186 mm/sec
17-03-18 04:58:23.654 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.985358,
17-03-18 04:58:24.374 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:24.374 -07 000000618 INF: FPGA: Recv YRDPOS 139681
17-03-18 04:58:24.384 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:24.384 -07 000000626 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:24.414 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:24.414 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:24.414 -07 000000626 INF: Y Motor: Moved to 68.2036 after 1467 ms (table move)
17-03-18 04:58:24.414 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136310 mm (DAC = 29777)
17-03-18 04:58:24.414 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.414 -07 000000424 INF: FPGA: Recv ZSGSRD 30517
17-03-18 04:58:24.424 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:24.424 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.424 -07 000000480 INF: FPGA: Recv ZSGSRD 30498
17-03-18 04:58:24.434 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.434 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.434 -07 000000579 INF: FPGA: Recv ZSGSRD 30509
17-03-18 04:58:24.444 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.444 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.444 -07 000000382 INF: FPGA: Recv ZSGSRD 30501
17-03-18 04:58:24.454 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.454 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.454 -07 000000569 INF: FPGA: Recv ZSGSRD 30513
17-03-18 04:58:24.464 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.464 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.464 -07 000000455 INF: FPGA: Recv ZSGSRD 30516
17-03-18 04:58:24.474 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.474 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.474 -07 000000447 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:58:24.484 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.484 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.484 -07 000000618 INF: FPGA: Recv ZSGSRD 30517
17-03-18 04:58:24.494 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.494 -07 000000382 INF: FPGA: Recv ZSGSRD 30505
17-03-18 04:58:24.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:24.504 -07 000000608 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:58:24.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:24.514 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:24.514 -07 000000455 INF: FPGA: Recv ZPIEZORD 26300
17-03-18 04:58:24.524 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:24.524 -07 000000461 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.3 V.
17-03-18 04:58:24.524 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30509 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30508 (-135.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30498 (-135.5 uncal um), Max = 30517 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:58:24.524 -07 000000461 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30509, posNoise = 8, negNoise = 11
17-03-18 04:58:24.524 -07 000000461 INF: Z Motor: After move to -0.136310, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:24.524 -07 000000461 INF: Z Motor: Settle wait time = 1472 ms, measure time = 105 ms (allowed 150 ms), total time = 1577 ms
17-03-18 04:58:24.524 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:24.574 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 04:58:24.574 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:24.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:24.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:24.574 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:24.574 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:24.574 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:24.574 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:24.584 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:24.584 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:24.584 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:24.584 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:24.594 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:58:24.594 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:58:24.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:24.644 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:24.944 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:24.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:24.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:24.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 04:58:24.984 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:24.984 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:24.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:58:25.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:58:25.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:25.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:25.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:58:25.084 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:25.084 -07 000000626 INF: Autofocus start
17-03-18 04:58:25.084 -07 000000626 INF: MeasureProfile start
17-03-18 04:58:25.084 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:25.094 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:25.094 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:25.094 -07 000000626 INF: MeasureProfile done
17-03-18 04:58:25.094 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:58:25.094 -07 000000626 INF: Autofocus finished
17-03-18 04:58:25.294 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:25.294 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:25.294 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.13631964024412. ----------
17-03-18 04:58:25.294 -07 000000610 INF: Cycle	131	Tile	11	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:25.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28284, sync = True, waitForSettling = True)
17-03-18 04:58:25.304 -07 000000610 INF: Z Motor: Moving to -0.129476 mm, started at -0.136320 mm, distance = 6.84 um
17-03-18 04:58:25.304 -07 000000610 INF: FPGA: Xmit ZDACW 28284\n [Z Motor]
17-03-18 04:58:25.304 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:58:25.314 -07 000000610 INF: FPGA: 'ZDACW 28284' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:25.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:25.314 -07 000000479 INF: FPGA: Recv ZDACR 28284
17-03-18 04:58:25.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:25.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.474 -07 000000424 INF: FPGA: Recv ZSGSRD 29447
17-03-18 04:58:25.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:25.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.484 -07 000000606 INF: FPGA: Recv ZSGSRD 29447
17-03-18 04:58:25.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.494 -07 000000501 INF: FPGA: Recv ZSGSRD 29447
17-03-18 04:58:25.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.504 -07 000000512 INF: FPGA: Recv ZSGSRD 29443
17-03-18 04:58:25.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.514 -07 000000502 INF: FPGA: Recv ZSGSRD 29438
17-03-18 04:58:25.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.524 -07 000000474 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:58:25.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.534 -07 000000479 INF: FPGA: Recv ZSGSRD 29446
17-03-18 04:58:25.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.544 -07 000000579 INF: FPGA: Recv ZSGSRD 29437
17-03-18 04:58:25.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29444
17-03-18 04:58:25.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:25.564 -07 000000467 INF: FPGA: Recv ZSGSRD 29445
17-03-18 04:58:25.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:25.574 -07 000000480 INF: FPGA: Recv ZPIEZORD 24905
17-03-18 04:58:25.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:25.584 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -10.0 V.
17-03-18 04:58:25.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29445 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29446 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29437 (-128.7 uncal um), Max = 29454 (-128.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:25.584 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29445, posNoise = 9, negNoise = 8
17-03-18 04:58:25.584 -07 000000610 INF: Z Motor: After move to -0.129476, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:25.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:58:25.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:25.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:25.584 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:25.584 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:25.584 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:25.584 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:25.584 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:25.584 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:25.584 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:25.584 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:25.584 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:25.584 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:25.594 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:25.594 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:58:25.594 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:25.594 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:25.604 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:58:25.604 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:25.604 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:58:25.604 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:25.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28461 150\n [Camera]
17-03-18 04:58:25.804 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:26.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:26.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:26.234 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:26.234 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:26.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:26.234 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:26.234 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) start.
17-03-18 04:58:26.234 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:26.234 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:26.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:58:26.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28461 814
17-03-18 04:58:26.574 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:26.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:58:26.614 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:58:26.614 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:26.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:58:26.614 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:58:26.614 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:26.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:26.624 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:26.624 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:58:26.624 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:58:26.724 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:26.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:26.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:26.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:26.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:26.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:26.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) start.
17-03-18 04:58:26.784 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:26.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:26.784 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:26.784 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:26.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) start.
17-03-18 04:58:26.974 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:58:26.974 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:26.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28461 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-18 04:58:26.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:26.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.129484278525286. ------
17-03-18 04:58:26.974 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13613 mm
17-03-18 04:58:26.974 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:26.974 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:27.104 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29737, sync = True, waitForSettling = False)
17-03-18 04:58:27.104 -07 000000447 INF: Z Motor: Moving to -0.136127 mm, started at -0.129484 mm, distance = -6.64 um
17-03-18 04:58:27.104 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:27.104 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:58:27.104 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 04:58:27.114 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 124 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 04:58:27.114 -07 000000447 INF: FPGA: Xmit ZDACW 29737\n [Z Motor]
17-03-18 04:58:27.114 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:58:27.124 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:27.124 -07 000000447 INF: FPGA: 'ZDACW 29737' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:58:27.124 -07 000000424 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:58:27.134 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:27.134 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:58:27.134 -07 000000569 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:27.134 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:27.134 -07 000000569 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:58:27.144 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:27.144 -07 000000474 INF: FPGA: Recv ZDACR 29737
17-03-18 04:58:27.154 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:27.154 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:27.154 -07 000000447 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:58:27.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:58:27.174 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:58:27.174 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:27.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:58:27.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:58:27.174 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:27.174 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:27.174 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:27.174 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:58:27.184 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:58:27.334 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:27.334 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 04:58:27.524 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:58:27.524 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:58:27.574 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:27.574 -07 000000581 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:58:27.584 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:27.584 -07 000000569 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:27.584 -07 000000569 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 04:58:27.584 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-18 04:58:28.534 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:28.534 -07 000000501 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:58:28.544 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:28.544 -07 000000569 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:28.574 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:28.574 -07 000000569 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:28.574 -07 000000569 INF: Y Motor: Moved to 69.0259 after 1464 ms (table move)
17-03-18 04:58:28.574 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136127 mm (DAC = 29737)
17-03-18 04:58:28.574 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.574 -07 000000447 INF: FPGA: Recv ZSGSRD 30475
17-03-18 04:58:28.584 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:28.584 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.584 -07 000000467 INF: FPGA: Recv ZSGSRD 30475
17-03-18 04:58:28.594 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.594 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.594 -07 000000501 INF: FPGA: Recv ZSGSRD 30479
17-03-18 04:58:28.604 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.604 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.604 -07 000000625 INF: FPGA: Recv ZSGSRD 30480
17-03-18 04:58:28.614 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.614 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.614 -07 000000461 INF: FPGA: Recv ZSGSRD 30471
17-03-18 04:58:28.624 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.624 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.624 -07 000000626 INF: FPGA: Recv ZSGSRD 30475
17-03-18 04:58:28.634 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.634 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.634 -07 000000618 INF: FPGA: Recv ZSGSRD 30481
17-03-18 04:58:28.644 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.644 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.644 -07 000000501 INF: FPGA: Recv ZSGSRD 30486
17-03-18 04:58:28.654 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.654 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.654 -07 000000502 INF: FPGA: Recv ZSGSRD 30484
17-03-18 04:58:28.664 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.664 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:28.664 -07 000000608 INF: FPGA: Recv ZSGSRD 30481
17-03-18 04:58:28.674 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.674 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:28.674 -07 000000479 INF: FPGA: Recv ZPIEZORD 26251
17-03-18 04:58:28.684 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:28.684 -07 000000382 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.538 V. Piezo Error = -9.3 V.
17-03-18 04:58:28.684 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30479 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30480 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30471 (-135.3 uncal um), Max = 30486 (-135.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:28.684 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30479, posNoise = 7, negNoise = 8
17-03-18 04:58:28.684 -07 000000382 INF: Z Motor: After move to -0.136127, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:28.684 -07 000000382 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms
17-03-18 04:58:28.684 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:28.734 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1752 ms
17-03-18 04:58:28.734 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:28.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:28.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:28.734 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:28.734 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:28.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:28.734 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:28.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:28.734 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:28.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:28.744 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:28.754 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:58:28.754 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:58:28.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:28.804 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:29.024 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.996267,
17-03-18 04:58:29.104 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:29.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:29.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:29.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:29.144 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:29.144 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:29.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 04:58:29.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:58:29.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:29.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:29.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:58:29.244 -07 000000502 INF: Autofocus start
17-03-18 04:58:29.244 -07 000000502 INF: MeasureProfile start
17-03-18 04:58:29.244 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:29.244 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:29.254 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:29.254 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:29.254 -07 000000502 INF: MeasureProfile done
17-03-18 04:58:29.254 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:58:29.254 -07 000000502 INF: Autofocus finished
17-03-18 04:58:29.454 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:29.454 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:58:29.464 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136126913879867. ----------
17-03-18 04:58:29.464 -07 000000610 INF: Cycle	131	Tile	12	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:29.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28262, sync = True, waitForSettling = True)
17-03-18 04:58:29.464 -07 000000610 INF: Z Motor: Moving to -0.129375 mm, started at -0.136127 mm, distance = 6.75 um
17-03-18 04:58:29.464 -07 000000610 INF: FPGA: Xmit ZDACW 28262\n [Z Motor]
17-03-18 04:58:29.464 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 04:58:29.474 -07 000000610 INF: FPGA: 'ZDACW 28262' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:29.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:29.474 -07 000000479 INF: FPGA: Recv ZDACR 28262
17-03-18 04:58:29.484 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.634 -07 000000581 INF: FPGA: Recv ZSGSRD 29428
17-03-18 04:58:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:29.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.644 -07 000000461 INF: FPGA: Recv ZSGSRD 29426
17-03-18 04:58:29.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29431
17-03-18 04:58:29.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.664 -07 000000579 INF: FPGA: Recv ZSGSRD 29423
17-03-18 04:58:29.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.674 -07 000000501 INF: FPGA: Recv ZSGSRD 29429
17-03-18 04:58:29.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.684 -07 000000480 INF: FPGA: Recv ZSGSRD 29433
17-03-18 04:58:29.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.694 -07 000000461 INF: FPGA: Recv ZSGSRD 29425
17-03-18 04:58:29.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.704 -07 000000618 INF: FPGA: Recv ZSGSRD 29430
17-03-18 04:58:29.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.714 -07 000000474 INF: FPGA: Recv ZSGSRD 29422
17-03-18 04:58:29.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:29.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29425
17-03-18 04:58:29.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:29.734 -07 000000626 INF: FPGA: Recv ZPIEZORD 24875
17-03-18 04:58:29.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:29.744 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -10.0 V.
17-03-18 04:58:29.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29427 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29427 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29422 (-128.6 uncal um), Max = 29433 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:29.744 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29427, posNoise = 6, negNoise = 5
17-03-18 04:58:29.744 -07 000000610 INF: Z Motor: After move to -0.129375, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:29.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:58:29.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:29.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:29.744 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:29.744 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:29.744 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:29.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:29.744 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:29.744 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:29.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:29.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:29.744 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:29.744 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:29.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:58:29.744 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:29.754 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:29.754 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:29.764 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:58:29.764 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:29.764 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:58:29.764 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:29.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28438 150\n [Camera]
17-03-18 04:58:29.964 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:30.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:30.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:30.394 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:30.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:30.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:30.394 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:30.404 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:30.404 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:58:30.404 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:30.404 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:58:30.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28438 814
17-03-18 04:58:30.734 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:30.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:58:30.774 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:58:30.774 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:30.774 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:30.784 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:58:30.784 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:58:30.784 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:30.784 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:30.784 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:58:30.784 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:58:30.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:30.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:30.944 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:30.944 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:30.944 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) start.
17-03-18 04:58:30.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:30.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:30.944 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:30.944 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:30.944 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2636188432, 0x0, 418435064) start.
17-03-18 04:58:31.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:31.134 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:31.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28438 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-18 04:58:31.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:31.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129368642706735. ------
17-03-18 04:58:31.144 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:31.144 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13587 mm
17-03-18 04:58:31.144 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:31.144 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:31.144 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:58:31.144 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 04:58:31.144 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29682, sync = True, waitForSettling = False)
17-03-18 04:58:31.144 -07 000000461 INF: Z Motor: Moving to -0.135875 mm, started at -0.129369 mm, distance = -6.51 um
17-03-18 04:58:31.154 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:31.154 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:31.154 -07 000000474 INF: FPGA: Recv YRDPOS 141365
17-03-18 04:58:31.164 -07 000000461 INF: FPGA: Xmit ZDACW 29682\n [Z Motor]
17-03-18 04:58:31.164 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:58:31.164 -07 000000501 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:31.164 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:31.164 -07 000000501 INF: Y Motor: Moving 1355 steps-34
17-03-18 04:58:31.164 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:58:31.174 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:31.174 -07 000000461 INF: FPGA: 'ZDACW 29682' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:58:31.184 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:31.194 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:31.194 -07 000000479 INF: FPGA: Recv ZDACR 29682
17-03-18 04:58:31.204 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:31.204 -07 000000461 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 04:58:31.334 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2636188432, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:58:31.334 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:58:31.334 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:31.334 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:58:31.334 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:58:31.334 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:31.334 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:31.344 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:31.344 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:58:31.344 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:58:31.374 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:31.374 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:58:31.564 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 04:58:31.564 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 04:58:31.614 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:31.614 -07 000000625 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:58:31.624 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:31.624 -07 000000501 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:31.624 -07 000000501 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:58:31.624 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.847 mm, average velocity = 2.117 mm/sec
17-03-18 04:58:31.724 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:32.574 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:32.574 -07 000000382 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:58:32.584 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.584 -07 000000501 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:32.614 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:32.614 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:32.614 -07 000000501 INF: Y Motor: Moved to 69.8623 after 1467 ms (table move)
17-03-18 04:58:32.614 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135875 mm (DAC = 29682)
17-03-18 04:58:32.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.614 -07 000000569 INF: FPGA: Recv ZSGSRD 30440
17-03-18 04:58:32.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:32.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.624 -07 000000579 INF: FPGA: Recv ZSGSRD 30443
17-03-18 04:58:32.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.634 -07 000000480 INF: FPGA: Recv ZSGSRD 30443
17-03-18 04:58:32.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:32.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.644 -07 000000502 INF: FPGA: Recv ZSGSRD 30435
17-03-18 04:58:32.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.654 -07 000000461 INF: FPGA: Recv ZSGSRD 30439
17-03-18 04:58:32.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.664 -07 000000479 INF: FPGA: Recv ZSGSRD 30438
17-03-18 04:58:32.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.674 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.674 -07 000000581 INF: FPGA: Recv ZSGSRD 30443
17-03-18 04:58:32.684 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.684 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.684 -07 000000608 INF: FPGA: Recv ZSGSRD 30437
17-03-18 04:58:32.694 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.694 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.694 -07 000000502 INF: FPGA: Recv ZSGSRD 30440
17-03-18 04:58:32.704 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.704 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:32.704 -07 000000461 INF: FPGA: Recv ZSGSRD 30444
17-03-18 04:58:32.714 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.714 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:32.714 -07 000000579 INF: FPGA: Recv ZPIEZORD 26200
17-03-18 04:58:32.724 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:32.724 -07 000000467 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -9.3 V.
17-03-18 04:58:32.724 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30440 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30440 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30435 (-135.1 uncal um), Max = 30444 (-135.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:32.724 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30440, posNoise = 4, negNoise = 5
17-03-18 04:58:32.724 -07 000000467 INF: Z Motor: After move to -0.135875, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:32.724 -07 000000467 INF: Z Motor: Settle wait time = 1470 ms, measure time = 106 ms (allowed 150 ms), total time = 1576 ms
17-03-18 04:58:32.724 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:32.774 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:58:32.774 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:32.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:32.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:32.774 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:32.774 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:32.774 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:32.774 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:32.774 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:58:32.774 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:32.784 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:32.784 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:32.794 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:58:32.794 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:58:32.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:32.844 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:33.144 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:33.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:33.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:33.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-18 04:58:33.184 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:33.184 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:33.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:58:33.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:58:33.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:33.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:33.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:58:33.284 -07 000000480 INF: Autofocus start
17-03-18 04:58:33.284 -07 000000480 INF: MeasureProfile start
17-03-18 04:58:33.284 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:33.284 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:33.294 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:33.294 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:33.294 -07 000000480 INF: MeasureProfile done
17-03-18 04:58:33.294 -07 000000480 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:58:33.294 -07 000000480 INF: Autofocus finished
17-03-18 04:58:33.494 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:33.494 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:33.504 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.135876369606339. ----------
17-03-18 04:58:33.504 -07 000000610 INF: Cycle	131	Tile	13	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:33.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28223, sync = True, waitForSettling = True)
17-03-18 04:58:33.504 -07 000000610 INF: Z Motor: Moving to -0.129197 mm, started at -0.135876 mm, distance = 6.68 um
17-03-18 04:58:33.504 -07 000000610 INF: FPGA: Xmit ZDACW 28223\n [Z Motor]
17-03-18 04:58:33.514 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:58:33.514 -07 000000610 INF: FPGA: 'ZDACW 28223' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:58:33.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:33.514 -07 000000382 INF: FPGA: Recv ZDACR 28223
17-03-18 04:58:33.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:33.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.674 -07 000000447 INF: FPGA: Recv ZSGSRD 29403
17-03-18 04:58:33.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.684 -07 000000455 INF: FPGA: Recv ZSGSRD 29400
17-03-18 04:58:33.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29404
17-03-18 04:58:33.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.704 -07 000000608 INF: FPGA: Recv ZSGSRD 29400
17-03-18 04:58:33.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.714 -07 000000479 INF: FPGA: Recv ZSGSRD 29401
17-03-18 04:58:33.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29399
17-03-18 04:58:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.734 -07 000000581 INF: FPGA: Recv ZSGSRD 29402
17-03-18 04:58:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.744 -07 000000467 INF: FPGA: Recv ZSGSRD 29401
17-03-18 04:58:33.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.764 -07 000000579 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:58:33.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:33.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:33.774 -07 000000424 INF: FPGA: Recv ZSGSRD 29401
17-03-18 04:58:33.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:33.784 -07 000000502 INF: FPGA: Recv ZPIEZORD 24843
17-03-18 04:58:33.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:33.794 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.0 V.
17-03-18 04:58:33.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29402 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29401 (-128.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29399 (-128.4 uncal um), Max = 29405 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:58:33.794 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29402, posNoise = 3, negNoise = 3
17-03-18 04:58:33.794 -07 000000610 INF: Z Motor: After move to -0.129197, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:33.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 04:58:33.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:33.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:33.794 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:33.794 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:33.794 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:33.794 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:33.794 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:33.794 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:33.794 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:33.794 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:33.794 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:33.794 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:33.804 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:33.804 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:33.804 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:33.804 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:33.814 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:58:33.814 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:33.814 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:58:33.814 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:33.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28399 150\n [Camera]
17-03-18 04:58:34.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:34.394 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.014009,
17-03-18 04:58:34.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:34.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:34.444 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:34.444 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:34.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:58:34.444 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:34.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:34.444 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:34.444 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:34.444 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:58:34.634 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28399 814
17-03-18 04:58:34.784 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:34.824 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:58:34.824 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:58:34.824 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:34.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:58:34.824 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:58:34.824 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:34.824 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:34.824 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:58:34.824 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:34.834 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:58:34.994 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:34.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:34.994 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:34.994 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:34.994 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:58:34.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:34.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:34.994 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:34.994 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:34.994 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:58:35.184 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:35.184 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:35.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28399 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:58:35.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:35.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.129208037403191. ------
17-03-18 04:58:35.184 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:35.184 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13554 mm
17-03-18 04:58:35.184 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:35.314 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:35.314 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 129 ms to get response, and 131 ms overall
17-03-18 04:58:35.324 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:35.324 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:58:35.324 -07 000000579 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 04:58:35.324 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29610, sync = True, waitForSettling = False)
17-03-18 04:58:35.324 -07 000000569 INF: Z Motor: Moving to -0.135546 mm, started at -0.129208 mm, distance = -6.34 um
17-03-18 04:58:35.334 -07 000000569 INF: FPGA: Xmit ZDACW 29610\n [Z Motor]
17-03-18 04:58:35.334 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:58:35.344 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:35.344 -07 000000569 INF: FPGA: 'ZDACW 29610' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:58:35.344 -07 000000424 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:58:35.354 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:35.354 -07 000000579 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:35.354 -07 000000579 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:35.354 -07 000000579 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:58:35.354 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:35.354 -07 000000447 INF: FPGA: Recv ZDACR 29610
17-03-18 04:58:35.364 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:35.364 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:58:35.364 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:35.394 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:58:35.394 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:58:35.394 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:35.394 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:58:35.394 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:58:35.394 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:35.404 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:35.404 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:35.404 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:58:35.404 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:58:35.524 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:35.524 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:35.734 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:58:35.744 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 390 ms overall
17-03-18 04:58:35.794 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:35.804 -07 000000455 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:58:35.804 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:58:35.804 -07 000000579 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:35.804 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:58:35.804 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.155 mm/sec
17-03-18 04:58:36.724 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:36.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:36.754 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:36.754 -07 000000467 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:58:36.764 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:36.764 -07 000000579 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:36.804 -07 000000579 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:36.804 -07 000000579 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:36.804 -07 000000579 INF: Y Motor: Moved to 70.6875 after 1486 ms (table move)
17-03-18 04:58:36.814 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135546 mm (DAC = 29610)
17-03-18 04:58:36.814 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.814 -07 000000447 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:58:36.824 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:36.824 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.824 -07 000000618 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:58:36.834 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30391
17-03-18 04:58:36.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.844 -07 000000625 INF: FPGA: Recv ZSGSRD 30392
17-03-18 04:58:36.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.854 -07 000000581 INF: FPGA: Recv ZSGSRD 30394
17-03-18 04:58:36.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.864 -07 000000447 INF: FPGA: Recv ZSGSRD 30398
17-03-18 04:58:36.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.874 -07 000000382 INF: FPGA: Recv ZSGSRD 30390
17-03-18 04:58:36.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.884 -07 000000467 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:58:36.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.894 -07 000000626 INF: FPGA: Recv ZSGSRD 30386
17-03-18 04:58:36.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:36.904 -07 000000581 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:58:36.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.914 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:36.914 -07 000000447 INF: FPGA: Recv ZPIEZORD 26151
17-03-18 04:58:36.924 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:36.924 -07 000000501 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.3 V.
17-03-18 04:58:36.924 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30390 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30388 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30386 (-134.7 uncal um), Max = 30398 (-134.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:58:36.924 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30390, posNoise = 8, negNoise = 4
17-03-18 04:58:36.924 -07 000000501 INF: Z Motor: After move to -0.135546, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:36.924 -07 000000501 INF: Z Motor: Settle wait time = 1490 ms, measure time = 109 ms (allowed 150 ms), total time = 1599 ms
17-03-18 04:58:36.924 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:36.974 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1781 ms
17-03-18 04:58:36.974 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:36.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:36.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:36.974 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:36.974 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:36.974 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:36.974 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:36.974 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:36.974 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:36.984 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:36.984 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:36.984 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:58:36.984 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:58:36.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:37.034 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:37.334 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:37.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:37.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:37.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:37.374 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:37.374 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:37.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:58:37.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:58:37.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:37.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:58:37.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:58:37.474 -07 000000608 INF: Autofocus start
17-03-18 04:58:37.474 -07 000000608 INF: MeasureProfile start
17-03-18 04:58:37.474 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:37.474 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:37.484 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:37.484 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:37.484 -07 000000608 INF: MeasureProfile done
17-03-18 04:58:37.484 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:58:37.484 -07 000000608 INF: Autofocus finished
17-03-18 04:58:37.684 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:37.684 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:37.684 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135555158999251. ----------
17-03-18 04:58:37.694 -07 000000610 INF: Cycle	131	Tile	14	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:37.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28117, sync = True, waitForSettling = True)
17-03-18 04:58:37.694 -07 000000610 INF: Z Motor: Moving to -0.128711 mm, started at -0.135555 mm, distance = 6.84 um
17-03-18 04:58:37.694 -07 000000610 INF: FPGA: Xmit ZDACW 28117\n [Z Motor]
17-03-18 04:58:37.694 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:58:37.704 -07 000000610 INF: FPGA: 'ZDACW 28117' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:37.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:37.704 -07 000000512 INF: FPGA: Recv ZDACR 28117
17-03-18 04:58:37.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:37.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29329
17-03-18 04:58:37.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:37.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.874 -07 000000501 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:58:37.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.884 -07 000000618 INF: FPGA: Recv ZSGSRD 29326
17-03-18 04:58:37.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.894 -07 000000382 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:58:37.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29330
17-03-18 04:58:37.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.914 -07 000000502 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:58:37.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.924 -07 000000581 INF: FPGA: Recv ZSGSRD 29326
17-03-18 04:58:37.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.934 -07 000000626 INF: FPGA: Recv ZSGSRD 29328
17-03-18 04:58:37.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.944 -07 000000467 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:58:37.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:37.954 -07 000000512 INF: FPGA: Recv ZSGSRD 29328
17-03-18 04:58:37.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:37.964 -07 000000479 INF: FPGA: Recv ZPIEZORD 24756
17-03-18 04:58:37.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:37.974 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -10.0 V.
17-03-18 04:58:37.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29326 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29318 (-127.9 uncal um), Max = 29330 (-128.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:37.974 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29326, posNoise = 4, negNoise = 8
17-03-18 04:58:37.974 -07 000000610 INF: Z Motor: After move to -0.128711, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:37.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:58:37.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:37.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:37.974 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:37.974 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:37.974 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:37.974 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:37.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:37.974 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:37.974 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:37.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:37.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:37.984 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:37.984 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:37.984 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:37.984 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:37.984 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:37.994 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:58:37.994 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:37.994 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:58:37.994 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:37.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28294 150\n [Camera]
17-03-18 04:58:38.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:38.624 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:38.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:38.624 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:38.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:38.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:38.624 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:38.634 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:38.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:58:38.634 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:38.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:58:38.814 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28294 814
17-03-18 04:58:38.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:39.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:58:39.024 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:58:39.024 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:39.034 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:39.034 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:58:39.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:58:39.034 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:58:39.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:39.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:39.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:58:39.174 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-18 04:58:39.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-18 04:58:39.174 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:39.174 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:39.174 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:58:39.174 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-18 04:58:39.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-18 04:58:39.174 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:39.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:39.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:58:39.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:58:39.364 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:39.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28294 150' command took 2 ms to send, 1366 ms to get response, and 1369 ms overall
17-03-18 04:58:39.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:39.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128719797280417. ------
17-03-18 04:58:39.494 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13546 mm
17-03-18 04:58:39.494 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:39.494 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:58:39.494 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 04:58:39.494 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29590, sync = True, waitForSettling = False)
17-03-18 04:58:39.504 -07 000000625 INF: Z Motor: Moving to -0.135454 mm, started at -0.128720 mm, distance = -6.73 um
17-03-18 04:58:39.504 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:39.504 -07 000000606 INF: FPGA: Recv YRDPOS 144768
17-03-18 04:58:39.514 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:39.514 -07 000000626 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:39.514 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:39.514 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:58:39.524 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:39.524 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:39.534 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 04:58:39.544 -07 000000625 INF: FPGA: Xmit ZDACW 29590\n [Z Motor]
17-03-18 04:58:39.544 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 04:58:39.554 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:39.554 -07 000000625 INF: FPGA: 'ZDACW 29590' command took 0 ms to send, 0 ms to get response, and 49 ms overall
17-03-18 04:58:39.564 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:39.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:58:39.574 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:58:39.574 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:39.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:58:39.574 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:58:39.574 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:39.584 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:39.584 -07 000000579 INF: FPGA: Recv ZDACR 29590
17-03-18 04:58:39.584 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:39.584 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:58:39.584 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:58:39.594 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:58:39.594 -07 000000625 INF: Z Motor: MoveAbsStepped took 90 ms (did NOT wait for settling yet))
17-03-18 04:58:39.594 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:58:39.764 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:39.764 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 233 ms overall
17-03-18 04:58:39.834 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.988112,
17-03-18 04:58:39.924 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 04:58:39.924 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 417 ms overall
17-03-18 04:58:39.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:39.984 -07 000000474 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:58:39.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:39.984 -07 000000626 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:39.984 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:58:39.984 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 417 ms, distance = 0.845 mm, average velocity = 2.027 mm/sec
17-03-18 04:58:40.934 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:40.934 -07 000000581 INF: FPGA: Recv YRDPOS 146468
17-03-18 04:58:40.944 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:40.944 -07 000000626 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:40.974 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:40.974 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:40.974 -07 000000626 INF: Y Motor: Moved to 71.5176 after 1471 ms (table move)
17-03-18 04:58:40.974 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135454 mm (DAC = 29590)
17-03-18 04:58:40.974 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:40.974 -07 000000502 INF: FPGA: Recv ZSGSRD 30383
17-03-18 04:58:40.984 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:40.984 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:40.984 -07 000000467 INF: FPGA: Recv ZSGSRD 30371
17-03-18 04:58:40.994 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:40.994 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:40.994 -07 000000447 INF: FPGA: Recv ZSGSRD 30373
17-03-18 04:58:41.004 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.004 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30379
17-03-18 04:58:41.014 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.014 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.014 -07 000000569 INF: FPGA: Recv ZSGSRD 30373
17-03-18 04:58:41.024 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.024 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.024 -07 000000479 INF: FPGA: Recv ZSGSRD 30376
17-03-18 04:58:41.034 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30369
17-03-18 04:58:41.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.044 -07 000000447 INF: FPGA: Recv ZSGSRD 30372
17-03-18 04:58:41.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.054 -07 000000512 INF: FPGA: Recv ZSGSRD 30380
17-03-18 04:58:41.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:41.064 -07 000000606 INF: FPGA: Recv ZSGSRD 30369
17-03-18 04:58:41.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.074 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:41.074 -07 000000474 INF: FPGA: Recv ZPIEZORD 26170
17-03-18 04:58:41.084 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:41.084 -07 000000455 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.515 V. Piezo Error = -9.2 V.
17-03-18 04:58:41.084 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30374 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30373 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30369 (-134.6 uncal um), Max = 30383 (-134.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:41.084 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30374, posNoise = 9, negNoise = 5
17-03-18 04:58:41.084 -07 000000455 INF: Z Motor: After move to -0.135454, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:41.084 -07 000000455 INF: Z Motor: Settle wait time = 1473 ms, measure time = 107 ms (allowed 150 ms), total time = 1580 ms
17-03-18 04:58:41.084 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:41.134 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 04:58:41.134 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:41.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:41.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:41.134 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:41.134 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:41.134 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:41.134 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:41.134 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:41.134 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:41.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:41.144 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:41.154 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:58:41.154 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:58:41.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:41.204 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:41.504 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:41.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:41.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:41.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:41.544 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:41.544 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:41.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 388 ms overall
17-03-18 04:58:41.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:58:41.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:41.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:41.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:58:41.644 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:41.644 -07 000000474 INF: Autofocus start
17-03-18 04:58:41.644 -07 000000474 INF: MeasureProfile start
17-03-18 04:58:41.644 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:41.654 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:58:41.654 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:41.654 -07 000000474 INF: MeasureProfile done
17-03-18 04:58:41.654 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:58:41.654 -07 000000474 INF: Autofocus finished
17-03-18 04:58:41.724 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:41.854 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:41.854 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:58:41.854 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135452371604982. ----------
17-03-18 04:58:41.854 -07 000000610 INF: Cycle	131	Tile	15	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:41.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28085, sync = True, waitForSettling = True)
17-03-18 04:58:41.864 -07 000000610 INF: Z Motor: Moving to -0.128565 mm, started at -0.135452 mm, distance = 6.89 um
17-03-18 04:58:41.864 -07 000000610 INF: FPGA: Xmit ZDACW 28085\n [Z Motor]
17-03-18 04:58:41.864 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:58:41.874 -07 000000610 INF: FPGA: 'ZDACW 28085' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:41.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:41.874 -07 000000608 INF: FPGA: Recv ZDACR 28085
17-03-18 04:58:41.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:41.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:42.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.034 -07 000000424 INF: FPGA: Recv ZSGSRD 29303
17-03-18 04:58:42.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.044 -07 000000626 INF: FPGA: Recv ZSGSRD 29300
17-03-18 04:58:42.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.054 -07 000000581 INF: FPGA: Recv ZSGSRD 29306
17-03-18 04:58:42.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.064 -07 000000474 INF: FPGA: Recv ZSGSRD 29301
17-03-18 04:58:42.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.074 -07 000000569 INF: FPGA: Recv ZSGSRD 29299
17-03-18 04:58:42.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.084 -07 000000447 INF: FPGA: Recv ZSGSRD 29302
17-03-18 04:58:42.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.094 -07 000000618 INF: FPGA: Recv ZSGSRD 29304
17-03-18 04:58:42.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.104 -07 000000608 INF: FPGA: Recv ZSGSRD 29302
17-03-18 04:58:42.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.114 -07 000000625 INF: FPGA: Recv ZSGSRD 29298
17-03-18 04:58:42.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:42.124 -07 000000467 INF: FPGA: Recv ZSGSRD 29304
17-03-18 04:58:42.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:42.134 -07 000000579 INF: FPGA: Recv ZPIEZORD 24738
17-03-18 04:58:42.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:42.144 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -10.0 V.
17-03-18 04:58:42.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29302 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29302 (-127.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29298 (-127.8 uncal um), Max = 29306 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:58:42.144 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29302, posNoise = 4, negNoise = 4
17-03-18 04:58:42.144 -07 000000610 INF: Z Motor: After move to -0.128565, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:42.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:58:42.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:42.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:42.144 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:42.144 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:42.144 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:42.144 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:42.144 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:42.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:42.144 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:42.144 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:42.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:42.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:42.154 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:42.154 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:42.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:42.154 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:42.164 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:58:42.164 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:58:42.164 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:58:42.164 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:58:42.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28262 150\n [Camera]
17-03-18 04:58:42.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 04:58:42.794 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:42.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:42.794 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:42.794 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:42.794 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) start.
17-03-18 04:58:42.794 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:42.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:42.794 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:42.794 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:42.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:58:42.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28262 814
17-03-18 04:58:43.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:43.184 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2619313368, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:58:43.184 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:58:43.184 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:43.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:58:43.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:58:43.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:43.184 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:43.184 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:58:43.184 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:43.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:58:43.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:43.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:43.344 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:43.344 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:43.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:58:43.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:43.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:43.344 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:43.344 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:43.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:58:43.534 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-18 04:58:43.534 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:43.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28262 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-18 04:58:43.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:43.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128565616189015. ------
17-03-18 04:58:43.534 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:43.534 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13499 mm
17-03-18 04:58:43.534 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:43.544 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:43.544 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:58:43.544 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:58:43.544 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29489, sync = True, waitForSettling = False)
17-03-18 04:58:43.544 -07 000000626 INF: Z Motor: Moving to -0.134992 mm, started at -0.128566 mm, distance = -6.43 um
17-03-18 04:58:43.544 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:43.544 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 04:58:43.554 -07 000000626 INF: FPGA: Xmit ZDACW 29489\n [Z Motor]
17-03-18 04:58:43.554 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:58:43.564 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:43.564 -07 000000626 INF: FPGA: 'ZDACW 29489' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:58:43.564 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:58:43.574 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:58:43.574 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:43.574 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:43.574 -07 000000480 INF: FPGA: Recv ZDACR 29489
17-03-18 04:58:43.574 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:43.574 -07 000000467 INF: Y Motor: Moving 1351 steps-31
17-03-18 04:58:43.584 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:43.584 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:43.584 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:58:43.744 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:58:43.744 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:58:43.744 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:43.744 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:58:43.744 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:58:43.744 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:43.744 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:43.744 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 04:58:43.744 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:43.754 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:43.754 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:58:43.754 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:58:43.954 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:58:43.954 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 04:58:44.004 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:44.014 -07 000000502 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:58:44.014 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:58:44.014 -07 000000467 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:44.014 -07 000000467 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:58:44.014 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.206 mm/sec
17-03-18 04:58:44.974 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:44.974 -07 000000461 INF: FPGA: Recv YRDPOS 148169
17-03-18 04:58:44.984 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:44.984 -07 000000467 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:45.014 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:45.014 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:45.014 -07 000000467 INF: Y Motor: Moved to 72.3481 after 1468 ms (table move)
17-03-18 04:58:45.014 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134992 mm (DAC = 29489)
17-03-18 04:58:45.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.014 -07 000000479 INF: FPGA: Recv ZSGSRD 30303
17-03-18 04:58:45.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:45.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30292
17-03-18 04:58:45.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.034 -07 000000618 INF: FPGA: Recv ZSGSRD 30299
17-03-18 04:58:45.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.044 -07 000000447 INF: FPGA: Recv ZSGSRD 30295
17-03-18 04:58:45.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.054 -07 000000608 INF: FPGA: Recv ZSGSRD 30303
17-03-18 04:58:45.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30296
17-03-18 04:58:45.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.074 -07 000000625 INF: FPGA: Recv ZSGSRD 30309
17-03-18 04:58:45.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.084 -07 000000618 INF: FPGA: Recv ZSGSRD 30305
17-03-18 04:58:45.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.094 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.094 -07 000000569 INF: FPGA: Recv ZSGSRD 30296
17-03-18 04:58:45.104 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.104 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:45.104 -07 000000608 INF: FPGA: Recv ZSGSRD 30303
17-03-18 04:58:45.114 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.114 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:45.114 -07 000000479 INF: FPGA: Recv ZPIEZORD 26054
17-03-18 04:58:45.124 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.124 -07 000000501 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.3 V.
17-03-18 04:58:45.124 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30300 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30301 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30292 (-134.1 uncal um), Max = 30309 (-134.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:45.124 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30300, posNoise = 9, negNoise = 8
17-03-18 04:58:45.124 -07 000000501 INF: Z Motor: After move to -0.134992, error = 0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:45.124 -07 000000501 INF: Z Motor: Settle wait time = 1473 ms, measure time = 105 ms (allowed 150 ms), total time = 1578 ms
17-03-18 04:58:45.124 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:45.174 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 04:58:45.174 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:45.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:45.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:45.174 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:45.174 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:45.174 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:45.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:45.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:45.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:45.184 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:45.184 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:45.194 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:58:45.194 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:58:45.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:45.244 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:45.244 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.99219,
17-03-18 04:58:45.544 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:45.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:45.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:45.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 04:58:45.574 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:45.584 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:45.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:58:45.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:58:45.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:45.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:45.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:58:45.684 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:45.684 -07 000000447 INF: Autofocus start
17-03-18 04:58:45.684 -07 000000447 INF: MeasureProfile start
17-03-18 04:58:45.684 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:45.694 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:45.694 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:45.704 -07 000000447 INF: MeasureProfile done
17-03-18 04:58:45.704 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:58:45.704 -07 000000447 INF: Autofocus finished
17-03-18 04:58:45.894 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:45.894 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:45.894 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.134976979906492. ----------
17-03-18 04:58:45.894 -07 000000610 INF: Cycle	131	Tile	16	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:45.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27996, sync = True, waitForSettling = True)
17-03-18 04:58:45.904 -07 000000610 INF: Z Motor: Moving to -0.128157 mm, started at -0.134977 mm, distance = 6.82 um
17-03-18 04:58:45.904 -07 000000610 INF: FPGA: Xmit ZDACW 27996\n [Z Motor]
17-03-18 04:58:45.904 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:58:45.914 -07 000000610 INF: FPGA: 'ZDACW 27996' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:58:45.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:45.914 -07 000000626 INF: FPGA: Recv ZDACR 27996
17-03-18 04:58:45.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:45.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:46.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.074 -07 000000382 INF: FPGA: Recv ZSGSRD 29236
17-03-18 04:58:46.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:46.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.084 -07 000000447 INF: FPGA: Recv ZSGSRD 29237
17-03-18 04:58:46.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.094 -07 000000479 INF: FPGA: Recv ZSGSRD 29241
17-03-18 04:58:46.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.104 -07 000000569 INF: FPGA: Recv ZSGSRD 29243
17-03-18 04:58:46.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.114 -07 000000502 INF: FPGA: Recv ZSGSRD 29242
17-03-18 04:58:46.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.124 -07 000000455 INF: FPGA: Recv ZSGSRD 29240
17-03-18 04:58:46.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.134 -07 000000625 INF: FPGA: Recv ZSGSRD 29242
17-03-18 04:58:46.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.144 -07 000000618 INF: FPGA: Recv ZSGSRD 29245
17-03-18 04:58:46.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.154 -07 000000625 INF: FPGA: Recv ZSGSRD 29231
17-03-18 04:58:46.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:46.164 -07 000000618 INF: FPGA: Recv ZSGSRD 29239
17-03-18 04:58:46.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:46.174 -07 000000461 INF: FPGA: Recv ZPIEZORD 24685
17-03-18 04:58:46.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:46.184 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -10.0 V.
17-03-18 04:58:46.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29240 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29240 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29231 (-127.3 uncal um), Max = 29245 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:58:46.184 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29240, posNoise = 5, negNoise = 9
17-03-18 04:58:46.184 -07 000000610 INF: Z Motor: After move to -0.128157, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:46.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:58:46.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:46.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:46.184 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:46.184 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:46.184 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:46.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:46.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:58:46.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:46.184 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:46.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:46.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:46.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:46.194 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:58:46.194 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:46.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:46.194 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:46.204 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:58:46.204 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:46.204 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:58:46.204 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:46.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28173 150\n [Camera]
17-03-18 04:58:46.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:46.724 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:46.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:46.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:46.834 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:46.834 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:46.834 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:58:46.834 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:46.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:46.834 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:46.834 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:46.834 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:58:47.024 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28173 814
17-03-18 04:58:47.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 04:58:47.204 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:58:47.204 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:58:47.204 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:47.214 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:58:47.214 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:47.214 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:58:47.214 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:58:47.214 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:47.214 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:47.224 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:58:47.384 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:47.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:47.384 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:47.384 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:47.384 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:58:47.384 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:47.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:47.384 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:47.384 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:47.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:58:47.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:58:47.574 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:47.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28173 150' command took 2 ms to send, 1364 ms to get response, and 1372 ms overall
17-03-18 04:58:47.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:47.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.128167315036225. ------
17-03-18 04:58:47.584 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:47.584 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13471 mm
17-03-18 04:58:47.584 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:47.704 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:47.704 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 04:58:47.704 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:47.704 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29428, sync = True, waitForSettling = False)
17-03-18 04:58:47.704 -07 000000608 INF: Z Motor: Moving to -0.134713 mm, started at -0.128167 mm, distance = -6.55 um
17-03-18 04:58:47.704 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:58:47.704 -07 000000625 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 04:58:47.714 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:47.714 -07 000000479 INF: FPGA: Recv YRDPOS 148170
17-03-18 04:58:47.724 -07 000000608 INF: FPGA: Xmit ZDACW 29428\n [Z Motor]
17-03-18 04:58:47.724 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:58:47.724 -07 000000625 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:47.724 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:58:47.724 -07 000000625 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:47.724 -07 000000625 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:58:47.734 -07 000000608 INF: FPGA: 'ZDACW 29428' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:58:47.734 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:47.744 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:47.744 -07 000000606 INF: FPGA: Recv ZDACR 29428
17-03-18 04:58:47.754 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:47.754 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:58:47.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:58:47.774 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:58:47.774 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:47.774 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:58:47.774 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:58:47.774 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:47.784 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:47.784 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:58:47.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:58:47.794 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:58:47.904 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:47.904 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:58:48.104 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 04:58:48.104 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 04:58:48.154 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:48.164 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:58:48.164 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:48.164 -07 000000625 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:48.164 -07 000000625 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 04:58:48.164 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.211 mm/sec
17-03-18 04:58:49.114 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:49.114 -07 000000382 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:58:49.124 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:49.124 -07 000000625 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:49.154 -07 000000625 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:49.154 -07 000000625 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:49.154 -07 000000625 INF: Y Motor: Moved to 73.1748 after 1445 ms (table move)
17-03-18 04:58:49.154 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134713 mm (DAC = 29428)
17-03-18 04:58:49.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.154 -07 000000467 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:58:49.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:49.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.164 -07 000000512 INF: FPGA: Recv ZSGSRD 30260
17-03-18 04:58:49.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.174 -07 000000455 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:58:49.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.184 -07 000000569 INF: FPGA: Recv ZSGSRD 30263
17-03-18 04:58:49.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30267
17-03-18 04:58:49.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.204 -07 000000467 INF: FPGA: Recv ZSGSRD 30258
17-03-18 04:58:49.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.214 -07 000000512 INF: FPGA: Recv ZSGSRD 30258
17-03-18 04:58:49.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.224 -07 000000382 INF: FPGA: Recv ZSGSRD 30251
17-03-18 04:58:49.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.234 -07 000000626 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:58:49.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:49.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30259
17-03-18 04:58:49.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.254 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:49.254 -07 000000461 INF: FPGA: Recv ZPIEZORD 26058
17-03-18 04:58:49.264 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:49.264 -07 000000447 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.2 V.
17-03-18 04:58:49.264 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30258 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30258 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30251 (-133.9 uncal um), Max = 30267 (-134.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:58:49.264 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30258, posNoise = 9, negNoise = 7
17-03-18 04:58:49.264 -07 000000447 INF: Z Motor: After move to -0.134713, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:49.264 -07 000000447 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-18 04:58:49.264 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:49.314 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1729 ms
17-03-18 04:58:49.314 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:49.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:49.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:49.314 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:49.314 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:49.324 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:49.324 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:49.324 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:49.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:49.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:49.324 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:49.334 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:58:49.334 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:58:49.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:49.374 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:49.674 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:49.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:49.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:49.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:49.714 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:49.714 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:49.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:58:49.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:58:49.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:49.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:58:49.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:58:49.814 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:49.814 -07 000000501 INF: Autofocus start
17-03-18 04:58:49.814 -07 000000501 INF: MeasureProfile start
17-03-18 04:58:49.814 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:49.824 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:49.824 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:49.824 -07 000000501 INF: MeasureProfile done
17-03-18 04:58:49.824 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:58:49.824 -07 000000501 INF: Autofocus finished
17-03-18 04:58:50.024 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:50.024 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:50.024 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134707162996538. ----------
17-03-18 04:58:50.024 -07 000000610 INF: Cycle	131	Tile	17	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:50.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27952, sync = True, waitForSettling = True)
17-03-18 04:58:50.034 -07 000000610 INF: Z Motor: Moving to -0.127956 mm, started at -0.134707 mm, distance = 6.75 um
17-03-18 04:58:50.034 -07 000000610 INF: FPGA: Xmit ZDACW 27952\n [Z Motor]
17-03-18 04:58:50.034 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 04:58:50.044 -07 000000610 INF: FPGA: 'ZDACW 27952' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:50.044 -07 000000579 INF: FPGA: Recv ZDACR 27952
17-03-18 04:58:50.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:50.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:58:50.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:50.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.214 -07 000000608 INF: FPGA: Recv ZSGSRD 29213
17-03-18 04:58:50.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.224 -07 000000382 INF: FPGA: Recv ZSGSRD 29209
17-03-18 04:58:50.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.234 -07 000000618 INF: FPGA: Recv ZSGSRD 29210
17-03-18 04:58:50.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.244 -07 000000479 INF: FPGA: Recv ZSGSRD 29208
17-03-18 04:58:50.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.254 -07 000000447 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:58:50.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.264 -07 000000461 INF: FPGA: Recv ZSGSRD 29211
17-03-18 04:58:50.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.274 -07 000000579 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:58:50.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:50.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29213
17-03-18 04:58:50.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:50.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:50.324 -07 000000480 INF: FPGA: Recv ZSGSRD 29206
17-03-18 04:58:50.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:58:50.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:50.344 -07 000000382 INF: FPGA: Recv ZPIEZORD 24709
17-03-18 04:58:50.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:58:50.354 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.265 V. Piezo Error = -9.9 V.
17-03-18 04:58:50.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29209 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29208 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29202 (-127.1 uncal um), Max = 29213 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:58:50.354 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29209, posNoise = 4, negNoise = 7
17-03-18 04:58:50.354 -07 000000610 INF: Z Motor: After move to -0.127956, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:50.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 04:58:50.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:50.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:50.354 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:50.354 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:50.354 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:50.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:50.354 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:50.354 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:50.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:50.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:50.354 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:50.354 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:50.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:50.354 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:50.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:50.364 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:50.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:58:50.374 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:58:50.374 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:58:50.374 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:58:50.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28129 150\n [Camera]
17-03-18 04:58:50.574 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:50.624 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 3.997626,
17-03-18 04:58:51.004 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:51.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:51.004 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:51.014 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:51.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:51.014 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:51.014 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:51.014 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:58:51.024 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:51.024 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:58:51.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28129 814
17-03-18 04:58:51.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:51.394 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:58:51.394 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:58:51.394 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:51.394 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:51.404 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:58:51.404 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:58:51.404 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:51.404 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:58:51.404 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:51.404 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:58:51.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:51.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:51.554 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:51.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:51.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:51.564 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:51.564 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:51.564 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:58:51.574 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:51.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 04:58:51.724 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:51.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:51.744 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:58:51.744 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:51.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28129 150' command took 2 ms to send, 1358 ms to get response, and 1370 ms overall
17-03-18 04:58:51.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:51.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.127968164459831. ------
17-03-18 04:58:51.754 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:51.754 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13373 mm
17-03-18 04:58:51.754 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:51.754 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:58:51.754 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 04:58:51.754 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29214, sync = True, waitForSettling = False)
17-03-18 04:58:51.754 -07 000000618 INF: Z Motor: Moving to -0.133733 mm, started at -0.127968 mm, distance = -5.76 um
17-03-18 04:58:51.754 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:51.764 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:51.764 -07 000000618 INF: FPGA: Xmit ZDACW 29214\n [Z Motor]
17-03-18 04:58:51.764 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 04:58:51.774 -07 000000618 INF: FPGA: 'ZDACW 29214' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:58:51.774 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:51.774 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 04:58:51.784 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:58:51.784 -07 000000461 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:51.894 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:51.894 -07 000000461 INF: Y Motor: Moving 1356 steps-36
17-03-18 04:58:51.894 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:51.904 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:51.904 -07 000000467 INF: FPGA: Recv ZDACR 29214
17-03-18 04:58:51.914 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:51.914 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 04:58:51.914 -07 000000618 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-18 04:58:51.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:58:51.964 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:58:51.964 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:51.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:58:51.964 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:58:51.964 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:51.964 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:51.964 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:58:51.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:51.974 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:58:52.104 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:52.104 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 118 ms to send, 201 ms to get response, and 340 ms overall
17-03-18 04:58:52.284 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:58:52.284 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 04:58:52.324 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:52.334 -07 000000455 INF: FPGA: Recv YRDPOS 151566
17-03-18 04:58:52.334 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:58:52.334 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:52.334 -07 000000461 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 04:58:52.334 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.848 mm, average velocity = 2.174 mm/sec
17-03-18 04:58:53.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:53.284 -07 000000424 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:58:53.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:53.294 -07 000000461 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:53.314 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:53.314 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:58:53.314 -07 000000461 INF: Y Motor: Moved to 74.0073 after 1557 ms (table move)
17-03-18 04:58:53.314 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133733 mm (DAC = 29214)
17-03-18 04:58:53.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.324 -07 000000455 INF: FPGA: Recv ZSGSRD 30111
17-03-18 04:58:53.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:58:53.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.324 -07 000000424 INF: FPGA: Recv ZSGSRD 30110
17-03-18 04:58:53.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.334 -07 000000501 INF: FPGA: Recv ZSGSRD 30113
17-03-18 04:58:53.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.344 -07 000000606 INF: FPGA: Recv ZSGSRD 30105
17-03-18 04:58:53.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.354 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.354 -07 000000447 INF: FPGA: Recv ZSGSRD 30105
17-03-18 04:58:53.364 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.364 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.364 -07 000000502 INF: FPGA: Recv ZSGSRD 30109
17-03-18 04:58:53.374 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.374 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.374 -07 000000512 INF: FPGA: Recv ZSGSRD 30110
17-03-18 04:58:53.384 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.384 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.384 -07 000000474 INF: FPGA: Recv ZSGSRD 30107
17-03-18 04:58:53.394 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.394 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.394 -07 000000455 INF: FPGA: Recv ZSGSRD 30102
17-03-18 04:58:53.404 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.404 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:53.404 -07 000000447 INF: FPGA: Recv ZSGSRD 30112
17-03-18 04:58:53.414 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.414 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:53.414 -07 000000424 INF: FPGA: Recv ZPIEZORD 25837
17-03-18 04:58:53.424 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:53.424 -07 000000480 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.458 V. Piezo Error = -9.4 V.
17-03-18 04:58:53.424 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30108 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30110 (-133.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30102 (-132.9 uncal um), Max = 30113 (-133.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:58:53.424 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30108, posNoise = 5, negNoise = 6
17-03-18 04:58:53.424 -07 000000480 INF: Z Motor: After move to -0.133733, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:53.424 -07 000000480 INF: Z Motor: Settle wait time = 1560 ms, measure time = 105 ms (allowed 150 ms), total time = 1665 ms
17-03-18 04:58:53.424 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:53.474 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-18 04:58:53.474 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:53.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:53.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:53.474 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:53.474 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:53.474 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:53.474 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:53.474 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:53.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:53.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:58:53.474 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:53.494 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:58:53.494 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:58:53.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:53.544 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:53.844 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:53.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:53.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:53.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:58:53.874 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:53.884 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:53.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:58:53.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:58:53.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:53.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:58:53.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:58:53.984 -07 000000479 INF: Autofocus start
17-03-18 04:58:53.984 -07 000000479 INF: MeasureProfile start
17-03-18 04:58:53.984 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:53.984 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:53.994 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:58:53.994 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:53.994 -07 000000479 INF: MeasureProfile done
17-03-18 04:58:53.994 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:58:53.994 -07 000000479 INF: Autofocus finished
17-03-18 04:58:54.194 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:54.194 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:58:54.194 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133743531175274. ----------
17-03-18 04:58:54.194 -07 000000610 INF: Cycle	131	Tile	18	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:54.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27738, sync = True, waitForSettling = True)
17-03-18 04:58:54.204 -07 000000610 INF: Z Motor: Moving to -0.126976 mm, started at -0.133744 mm, distance = 6.77 um
17-03-18 04:58:54.204 -07 000000610 INF: FPGA: Xmit ZDACW 27738\n [Z Motor]
17-03-18 04:58:54.204 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:58:54.214 -07 000000610 INF: FPGA: 'ZDACW 27738' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:54.214 -07 000000581 INF: FPGA: Recv ZDACR 27738
17-03-18 04:58:54.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:54.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.374 -07 000000579 INF: FPGA: Recv ZSGSRD 29050
17-03-18 04:58:54.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:54.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.384 -07 000000569 INF: FPGA: Recv ZSGSRD 29060
17-03-18 04:58:54.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.394 -07 000000581 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:58:54.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.404 -07 000000606 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:58:54.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.414 -07 000000501 INF: FPGA: Recv ZSGSRD 29060
17-03-18 04:58:54.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.424 -07 000000608 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:58:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29056
17-03-18 04:58:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29054
17-03-18 04:58:54.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.454 -07 000000606 INF: FPGA: Recv ZSGSRD 29053
17-03-18 04:58:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:54.464 -07 000000618 INF: FPGA: Recv ZSGSRD 29059
17-03-18 04:58:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:54.474 -07 000000625 INF: FPGA: Recv ZPIEZORD 24466
17-03-18 04:58:54.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:54.484 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.233 V. Piezo Error = -10.1 V.
17-03-18 04:58:54.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29055 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29054 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29050 (-126.2 uncal um), Max = 29060 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:58:54.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29055, posNoise = 5, negNoise = 5
17-03-18 04:58:54.484 -07 000000610 INF: Z Motor: After move to -0.126976, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:54.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:58:54.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:54.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:54.484 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:54.484 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:54.484 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:54.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:54.484 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:54.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:54.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:58:54.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:54.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:58:54.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:54.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:54.484 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:54.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:54.494 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:54.494 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:58:54.494 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:58:54.494 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:58:54.494 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:58:54.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 27915 150\n [Camera]
17-03-18 04:58:54.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:55.134 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:55.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:55.134 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:55.134 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:55.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:55.134 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:55.134 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:55.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:58:55.144 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:55.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:58:55.324 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27915 814
17-03-18 04:58:55.474 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-18 04:58:55.514 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 04:58:55.514 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:58:55.514 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:55.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:58:55.514 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:58:55.514 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:55.524 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:58:55.524 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:58:55.524 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:58:55.534 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:58:55.684 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1172
17-03-18 04:58:55.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1172
17-03-18 04:58:55.684 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:55.684 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:55.684 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:58:55.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1172
17-03-18 04:58:55.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1172
17-03-18 04:58:55.684 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:55.684 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:55.684 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) start.
17-03-18 04:58:55.874 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-18 04:58:55.874 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:55.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 27915 150' command took 2 ms to send, 1361 ms to get response, and 1370 ms overall
17-03-18 04:58:55.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:58:55.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.12697883579. ------
17-03-18 04:58:55.874 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:55.874 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13338 mm
17-03-18 04:58:55.874 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:58:55.874 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:58:55.874 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 04:58:55.874 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29137, sync = True, waitForSettling = False)
17-03-18 04:58:55.874 -07 000000608 INF: Z Motor: Moving to -0.133381 mm, started at -0.126979 mm, distance = -6.40 um
17-03-18 04:58:55.874 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:55.884 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:58:55.884 -07 000000608 INF: FPGA: Xmit ZDACW 29137\n [Z Motor]
17-03-18 04:58:55.884 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:58:55.894 -07 000000608 INF: FPGA: 'ZDACW 29137' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:55.894 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:55.894 -07 000000461 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:58:55.904 -07 000000424 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:58:55.904 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:55.904 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:58:55.904 -07 000000424 INF: Y Motor: Moving 1352 steps-32
17-03-18 04:58:55.904 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:58:55.914 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:55.914 -07 000000461 INF: FPGA: Recv ZDACR 29137
17-03-18 04:58:55.924 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:58:55.924 -07 000000608 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:58:55.924 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:58:56.004 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.014009,
17-03-18 04:58:56.074 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2583891104, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:58:56.074 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:58:56.074 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:56.074 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:58:56.074 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:58:56.074 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:56.074 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:58:56.084 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:58:56.084 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:58:56.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:58:56.104 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:58:56.104 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:58:56.294 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 04:58:56.294 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:58:56.334 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:56.334 -07 000000512 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:58:56.344 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:56.344 -07 000000424 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:56.344 -07 000000424 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 04:58:56.344 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 04:58:56.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:58:56.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 130. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:58:57.294 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:58:57.294 -07 000000461 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:58:57.304 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:57.304 -07 000000424 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:58:57.324 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:58:57.324 -07 000000424 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:58:57.324 -07 000000424 INF: Y Motor: Moved to 74.8306 after 1441 ms (table move)
17-03-18 04:58:57.324 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133381 mm (DAC = 29137)
17-03-18 04:58:57.324 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.324 -07 000000512 INF: FPGA: Recv ZSGSRD 30054
17-03-18 04:58:57.334 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:58:57.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.334 -07 000000581 INF: FPGA: Recv ZSGSRD 30044
17-03-18 04:58:57.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.344 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.344 -07 000000501 INF: FPGA: Recv ZSGSRD 30052
17-03-18 04:58:57.354 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.354 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.354 -07 000000626 INF: FPGA: Recv ZSGSRD 30046
17-03-18 04:58:57.364 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.364 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.364 -07 000000606 INF: FPGA: Recv ZSGSRD 30053
17-03-18 04:58:57.374 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.374 -07 000000608 INF: FPGA: Recv ZSGSRD 30053
17-03-18 04:58:57.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.384 -07 000000467 INF: FPGA: Recv ZSGSRD 30048
17-03-18 04:58:57.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.394 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.394 -07 000000424 INF: FPGA: Recv ZSGSRD 30052
17-03-18 04:58:57.404 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.404 -07 000000501 INF: FPGA: Recv ZSGSRD 30042
17-03-18 04:58:57.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:57.414 -07 000000606 INF: FPGA: Recv ZSGSRD 30059
17-03-18 04:58:57.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.424 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:57.424 -07 000000608 INF: FPGA: Recv ZPIEZORD 25813
17-03-18 04:58:57.434 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:57.434 -07 000000474 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.3 V.
17-03-18 04:58:57.434 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30050 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30052 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30059 (-132.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:58:57.434 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30050, posNoise = 9, negNoise = 8
17-03-18 04:58:57.434 -07 000000474 INF: Z Motor: After move to -0.133381, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:57.434 -07 000000474 INF: Z Motor: Settle wait time = 1444 ms, measure time = 107 ms (allowed 150 ms), total time = 1551 ms
17-03-18 04:58:57.434 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:58:57.484 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 04:58:57.484 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:58:57.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:57.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:57.484 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:57.484 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:58:57.484 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:57.484 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:57.484 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:57.484 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:58:57.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-18 04:58:57.494 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:58:57.494 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:58:57.494 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:58:57.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:58:57.544 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:58:57.844 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:58:57.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:58:57.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:58:57.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 04:58:57.884 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:58:57.884 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:58:57.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:58:57.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:58:57.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:57.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:58:57.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:58:57.984 -07 000000474 INF: Autofocus start
17-03-18 04:58:57.984 -07 000000474 INF: MeasureProfile start
17-03-18 04:58:57.984 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:58:57.994 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:58:57.994 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:58:57.994 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:58:58.004 -07 000000474 INF: MeasureProfile done
17-03-18 04:58:58.004 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:58:58.004 -07 000000474 INF: Autofocus finished
17-03-18 04:58:58.194 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:58:58.194 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:58:58.194 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133370926871052. ----------
17-03-18 04:58:58.204 -07 000000610 INF: Cycle	131	Tile	19	Exposure Settings		A	429	G	206	T	206	C	429
17-03-18 04:58:58.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27644, sync = True, waitForSettling = True)
17-03-18 04:58:58.204 -07 000000610 INF: Z Motor: Moving to -0.126546 mm, started at -0.133371 mm, distance = 6.82 um
17-03-18 04:58:58.204 -07 000000610 INF: FPGA: Xmit ZDACW 27644\n [Z Motor]
17-03-18 04:58:58.204 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:58:58.214 -07 000000610 INF: FPGA: 'ZDACW 27644' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:58:58.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:58:58.214 -07 000000569 INF: FPGA: Recv ZDACR 27644
17-03-18 04:58:58.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:58:58.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.374 -07 000000502 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:58:58.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:58:58.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.384 -07 000000474 INF: FPGA: Recv ZSGSRD 28992
17-03-18 04:58:58.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.394 -07 000000618 INF: FPGA: Recv ZSGSRD 28981
17-03-18 04:58:58.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.404 -07 000000606 INF: FPGA: Recv ZSGSRD 28991
17-03-18 04:58:58.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.414 -07 000000581 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:58:58.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.424 -07 000000512 INF: FPGA: Recv ZSGSRD 28995
17-03-18 04:58:58.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.434 -07 000000447 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:58:58.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.444 -07 000000479 INF: FPGA: Recv ZSGSRD 28986
17-03-18 04:58:58.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.454 -07 000000467 INF: FPGA: Recv ZSGSRD 28991
17-03-18 04:58:58.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:58:58.464 -07 000000626 INF: FPGA: Recv ZSGSRD 28993
17-03-18 04:58:58.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:58:58.474 -07 000000579 INF: FPGA: Recv ZPIEZORD 24429
17-03-18 04:58:58.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:58:58.484 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -10.0 V.
17-03-18 04:58:58.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28990 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28990 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 28981 (-125.7 uncal um), Max = 28995 (-125.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:58:58.484 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28990, posNoise = 5, negNoise = 9
17-03-18 04:58:58.484 -07 000000610 INF: Z Motor: After move to -0.126546, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:58:58.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 04:58:58.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:58:58.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:58:58.484 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:58:58.484 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:58:58.484 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:58:58.484 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:58:58.484 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:58:58.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:58:58.484 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:58:58.484 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:58:58.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:58:58.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:58:58.494 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:58:58.494 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:58:58.494 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:58:58.494 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:58:58.504 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 04:58:58.504 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:58:58.504 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:58:58.504 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:58:58.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 27821 150\n [Camera]
17-03-18 04:58:58.704 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:58:59.134 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-18 04:58:59.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-18 04:58:59.134 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:59.134 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:59.134 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2623718672, 0x0, 391868352) start.
17-03-18 04:58:59.144 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-18 04:58:59.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-18 04:58:59.144 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:59.144 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:59.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 04:58:59.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27821 814
17-03-18 04:58:59.484 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 04:58:59.534 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2623718672, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:58:59.534 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:58:59.534 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:59.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:58:59.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:58:59.544 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:58:59.544 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:59.544 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:58:59.544 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:58:59.554 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:58:59.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-18 04:58:59.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-18 04:58:59.684 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:58:59.684 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:58:59.684 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 04:58:59.684 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-18 04:58:59.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-18 04:58:59.694 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:58:59.694 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:58:59.694 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:58:59.884 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 04:58:59.884 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:58:59.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 27821 150' command took 2 ms to send, 1361 ms to get response, and 1373 ms overall
17-03-18 04:59:00.094 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:59:00.094 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:59:00.094 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:59:00.094 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 04:59:00.094 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:59:00.094 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:59:00.094 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:59:00.104 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:59:00.104 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:59:00.104 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:59:00.104 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 04:59:00.144 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:59:00.144 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:59:00.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:59:00.324 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 04:59:00.324 -07 000000610 INF: Imaging Cycle 131: ScanTilesCommand Cycle 131 time end. Duration was 163817 ms.
17-03-18 04:59:00.324 -07 000000610 INF: =================== Cycle #131 ===================
17-03-18 04:59:00.324 -07 000000610 INF: ===================  ===================
17-03-18 04:59:00.324 -07 000000579 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:59:00.334 -07 000000447 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 04:59:00.334 -07 000000579 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:59:00.334 -07 000000579 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 04:59:00.334 -07 000000579 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 131, FrontChillerTemperature: 4.014009, FrontChillerHeatSinkTemperature: 0.581929, AmbientTemperature: 18.63707, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.37001, GreenLEDSensorTemperature: 27.36938, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 04:59:00.444 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.